Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiAS5 | Genbank acc : NC_014636

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 343

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	19	lcl\|NC_014636.1_cdsid_YP_003969308.1	HHsearch (proba=100.00%)
Portal	14	lcl\|NC_014636.1_cdsid_YP_003969303.1	HHsearch (proba=100.00%)
TermL	11	lcl\|NC_014636.1_cdsid_YP_003969300.1	Blast (e-value=0)
MTP	13	lcl\|NC_014636.1_cdsid_YP_003969302.1	Blast (e-value=9e-86)
Sheath	12	lcl\|NC_014636.1_cdsid_YP_003969301.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	6	lcl\|NC_014636.1_cdsid_YP_003969295.1	HHsearch (proba=100.00%)
Hc2	7	lcl\|NC_014636.1_cdsid_YP_003969296.1	HHsearch (proba=100.00%)
Tc2	9	lcl\|NC_014636.1_cdsid_YP_003969298.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:106286 protein:vir:103463 protein:vir:7214	Aeh1 RB32 T4	94 % 60 % 60 %
Portal	protein:vir:106282 protein:vir:103458 protein:vir:6596	Aeh1 RB32 RB49	89 % 53 % 53 %
TermL	protein:vir:106290 protein:vir:108053 protein:vir:7202	Aeh1 JS98 T4	89 % 61 % 61 %
MTP	protein:vir:106171 protein:vir:108048 protein:vir:5664	Aeh1 JS98 KVP40	96 % 64 % 59 %
Sheath	protein:vir:106427 protein:vir:80984 protein:vir:100539	Aeh1 Phi1 25	88 % 55 % 55 %
Ad2	protein:vir:106428 protein:vir:81013 protein:vir:6589	Aeh1 Phi1 RB49	89 % 50 % 50 %
Hc2	protein:vir:106285 protein:vir:6590 protein:vir:107937	Aeh1 RB49 JS98	78 % 50 % 48 %
Tc2	protein:vir:106402 protein:vir:107931 protein:vir:81023	Aeh1 JS98 Phi1	87 % 55 % 53 %