BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_014636.1_cdsid_YP_003969302.1 [gene=phiAS5_ORF0013] [protein=tail tube protein] [protein_id=YP_003969302.1] [location=13260..13748] (162 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|20806|lcl|protein:vir:106171 Length: 162 # NCBI annotation: g... 306 9e-86 gi|28184|lcl|protein:vir:108048 Length: 163 # NCBI annotation: g... 239 2e-65 gi|24598|lcl|protein:vir:98264 Length: 161 # NCBI annotation: gp... 219 1e-59 gi|22944|lcl|protein:vir:101805 Length: 162 # NCBI annotation: g... 215 2e-58 gi|23193|lcl|protein:vir:101188 Length: 162 # NCBI annotation: t... 215 2e-58 gi|26945|lcl|protein:vir:5664 Length: 166 # NCBI annotation: gp1... 214 4e-58 gi|27703|lcl|protein:vir:6895 Length: 163 # NCBI annotation: gp1... 211 3e-57 gi|22058|lcl|protein:vir:103457 Length: 163 # NCBI annotation: t... 204 4e-55 gi|27412|lcl|protein:vir:7207 Length: 163 # NCBI annotation: gp1... 204 7e-55 gi|27125|lcl|protein:vir:6595 Length: 164 # NCBI annotation: tai... 203 7e-55 gi|25350|lcl|protein:vir:80985 Length: 164 # NCBI annotation: gp... 203 7e-55 gi|21079|lcl|protein:vir:100597 Length: 163 # NCBI annotation: g... 194 5e-52 gi|24014|lcl|protein:vir:104771 Length: 195 # NCBI annotation: T... 104 5e-25 gi|23415|lcl|protein:vir:103176 Length: 202 # NCBI annotation: g... 100 6e-24 gi|22265|lcl|protein:vir:104504 Length: 196 # NCBI annotation: g... 99 3e-23 gi|20246|lcl|protein:vir:106918 Length: 204 # NCBI annotation: t... 84 6e-19 gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: put... 25 0.44 gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF... 22 3.3 gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp... 22 4.6 >gi|20806|lcl|protein:vir:106171 Length: 162 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944107;genbank:gi:38640151;genbank:GeneID :2657917 Length = 162 Score = 306 bits (784), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 155/162 (95%), Positives = 159/162 (98%) Query: 1 MELTDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL 60 MELTDI++AYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL Sbjct: 1 MELTDISRAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL 60 Query: 61 AGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKG 120 AGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKG Sbjct: 61 AGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKG 120 Query: 121 KSTRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 K TRQYT YG WPTNIAE+ALSWDQNNEVETFEVTLS+DWWQ Sbjct: 121 KQTRQYTVYGAWPTNIAEIALSWDQNNEVETFEVTLSIDWWQ 162 >gi|28184|lcl|protein:vir:108048 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595295;genbank:gi:161622601;genbank:Ge neID:5783767 Length = 163 Score = 239 bits (609), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 104/163 (63%), Positives = 130/163 (79%), Gaps = 1/163 (0%) Query: 1 MELTDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL 60 MELTDIT+A+ +GDFARPNLFEVEIPF+GK+F FKCK A MP G+VE VPV Y N+K+ + Sbjct: 1 MELTDITRAFESGDFARPNLFEVEIPFLGKNFSFKCKAAPMPAGIVEKVPVGYMNRKINV 60 Query: 61 AGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKG 120 AGDRTF+DWTIT+YND+AH+TRQ ++WQNL + I G APA YKK+A VRQ R G Sbjct: 61 AGDRTFDDWTITIYNDDAHDTRQAIVDWQNLCHGMTNEITGAAPAEYKKQAVVRQFHRDG 120 Query: 121 KS-TRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 K+ T++ T YG+WPTN+ EV + WD NNEVETFE T ++DWW+ Sbjct: 121 KTVTKEVTIYGLWPTNVGEVQMDWDSNNEVETFESTFAIDWWE 163 >gi|24598|lcl|protein:vir:98264 Length: 161 # NCBI annotation: gp19 tail tube monomer # Family: family:all:1107 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239197;genbank:gi:66391672;genbank:GeneID :3416366 Length = 161 Score = 219 bits (559), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 92/160 (57%), Positives = 124/160 (77%) Query: 3 LTDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKLAG 62 LTDI +A+ +GDFARPNLFEVEIP++GK+F+FKCK A+MP VE VPV YQN+K+ +AG Sbjct: 2 LTDILRAFESGDFARPNLFEVEIPYLGKNFRFKCKAATMPAATVEKVPVGYQNRKINVAG 61 Query: 63 DRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKGKS 122 DRT++DWTIT+YND+AHNTR + W N+ + I G+ PA+YKK ATV+Q +R + Sbjct: 62 DRTYDDWTITIYNDDAHNTRDALVAWSNMMHGMGDQISGDIPANYKKTATVKQKNRNDEI 121 Query: 123 TRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 T ++T +G++PTN+ EV L WD NNE+ TFE T +LDWW+ Sbjct: 122 TAEHTIHGLFPTNVGEVTLDWDSNNEISTFECTFALDWWE 161 >gi|22944|lcl|protein:vir:101805 Length: 162 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238882;genbank:gi:66391957;genbank:GeneID :3416632 Length = 162 Score = 215 bits (548), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 88/162 (54%), Positives = 120/162 (74%) Query: 1 MELTDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL 60 M++TD+ +A+ +GDFARPNLFEVEIPF+G++FKFKCK +MP VE +PV Y N+K+ + Sbjct: 1 MDVTDVLRAFESGDFARPNLFEVEIPFLGQNFKFKCKAGTMPAATVEKIPVGYMNRKLNI 60 Query: 61 AGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKG 120 AGDR ++DWT+T+YND AH TRQ ++W + + I G+ P +YKK VRQ DR G Sbjct: 61 AGDRIYDDWTVTIYNDSAHITRQAIVDWNAMTHGMGNTITGDIPEAYKKPGVVRQKDRNG 120 Query: 121 KSTRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 +ST++Y G++PTN+ EV L WD NN V TFEVT +LDWW+ Sbjct: 121 ESTKEYAIIGLFPTNVGEVTLDWDDNNTVSTFEVTFALDWWE 162 >gi|23193|lcl|protein:vir:101188 Length: 162 # NCBI annotation: tail tube protein # Family: family:all:1107 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932510;genbank:gi:37651636;genbank:GeneID :2610681 Length = 162 Score = 215 bits (548), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 88/162 (54%), Positives = 120/162 (74%) Query: 1 MELTDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL 60 M++TD+ +A+ +GDFARPNLFEVEIPF+G++FKFKCK +MP VE +PV Y N+K+ + Sbjct: 1 MDVTDVLRAFESGDFARPNLFEVEIPFLGQNFKFKCKAGTMPAATVEKIPVGYMNRKLNI 60 Query: 61 AGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKG 120 AGDR ++DWT+T+YND AH TRQ ++W + + I G+ P +YKK VRQ DR G Sbjct: 61 AGDRIYDDWTVTIYNDSAHITRQAIVDWNAMTHGMGNTITGDIPEAYKKPGVVRQKDRNG 120 Query: 121 KSTRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 +ST++Y G++PTN+ EV L WD NN V TFEVT +LDWW+ Sbjct: 121 ESTKEYAIIGLFPTNVGEVTLDWDDNNTVSTFEVTFALDWWE 162 >gi|26945|lcl|protein:vir:5664 Length: 166 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899603;genbank:gi:34419590;genbank:GeneID :2545785 Length = 166 Score = 214 bits (545), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 93/161 (57%), Positives = 122/161 (75%) Query: 1 MELTDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL 60 + + +I +A+SNGDFARPNLFEVEIP++G++FKF+C+ +SMPPG VE V VSYQN+K + Sbjct: 3 LNVDNIKRAFSNGDFARPNLFEVEIPYLGQNFKFQCRASSMPPGSVEKVEVSYQNRKYNI 62 Query: 61 AGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKG 120 AGDRTF+DW +TVYNDE H+ R+ + WQ A L ++I GE P YK+ T+ QLDR G Sbjct: 63 AGDRTFDDWNVTVYNDETHDIRKAIMAWQARAVGLGKDISGETPDQYKRTGTITQLDRNG 122 Query: 121 KSTRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWW 161 T T YG++PT + EVAL WD NNE+ETFEVT SLD++ Sbjct: 123 DPTTSATVYGIFPTVVGEVALDWDSNNEIETFEVTFSLDYF 163 >gi|27703|lcl|protein:vir:6895 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861871;genbank:gi:32453662;genbank:GeneID :1494297 Length = 163 Score = 211 bits (538), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 91/163 (55%), Positives = 124/163 (76%), Gaps = 1/163 (0%) Query: 1 MELTDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL 60 M + D+T+A+ +GDFARPNLFEVEI ++G++F F+C+ ++P +VE VPVSY N+K+ + Sbjct: 1 MFVDDVTRAFESGDFARPNLFEVEISYLGQNFSFQCRATALPAAIVEKVPVSYMNRKINV 60 Query: 61 AGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKG 120 AGDRTF+DWTITV ND+AH+ RQ+F++WQ +A I G PA YKK A VRQ R Sbjct: 61 AGDRTFDDWTITVMNDDAHSIRQKFVDWQGIAAGQGNEITGGKPAEYKKSAIVRQFARDA 120 Query: 121 KS-TRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 K+ T++ G+WPTN+ EV+L WD NNE+ETFEVTL+LDWW+ Sbjct: 121 KTVTKEVEIVGLWPTNVGEVSLDWDSNNEIETFEVTLALDWWE 163 >gi|22058|lcl|protein:vir:103457 Length: 163 # NCBI annotation: tail tube monomer # Family: family:all:1107 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803109;genbank:gi:116326389;genbank:GeneI D:4405486 Length = 163 Score = 204 bits (519), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 87/163 (53%), Positives = 124/163 (76%), Gaps = 1/163 (0%) Query: 1 MELTDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL 60 M + D+T+A+ +GDFARPNLF+VEI ++G++F F+CK ++P G+VE +PV + N+K+ + Sbjct: 1 MFVDDVTRAFESGDFARPNLFQVEISYLGQNFTFQCKATALPAGIVEKIPVGFMNRKINV 60 Query: 61 AGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKG 120 AGDRTF+DWTITV NDEAH+ RQ+F++WQ++A I G PA YKK A VRQ R Sbjct: 61 AGDRTFDDWTITVMNDEAHDARQKFVDWQSIAAGQGNEITGGKPAEYKKSAIVRQYARDA 120 Query: 121 KS-TRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 K+ T++ G+WPTN+ E+ L WD NNE++TFEVTL+LD+W+ Sbjct: 121 KTVTKEVEIKGLWPTNVGELQLDWDSNNEIQTFEVTLALDYWE 163 >gi|27412|lcl|protein:vir:7207 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049781;genbank:gi:9632593;genbank:GeneID: 1258727 Length = 163 Score = 204 bits (518), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 86/163 (52%), Positives = 124/163 (76%), Gaps = 1/163 (0%) Query: 1 MELTDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL 60 M + D+T+A+ +GDFARPNLF+VEI ++G++F F+CK ++P G+VE +PV + N+K+ + Sbjct: 1 MFVDDVTRAFESGDFARPNLFQVEISYLGQNFTFQCKATALPAGIVEKIPVGFMNRKINV 60 Query: 61 AGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKG 120 AGDRTF+DWT+TV NDEAH+ RQ+F++WQ++A I G PA YKK A VRQ R Sbjct: 61 AGDRTFDDWTVTVMNDEAHDARQKFVDWQSIAAGQGNEITGGKPAEYKKSAIVRQYARDA 120 Query: 121 KS-TRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 K+ T++ G+WPTN+ E+ L WD NNE++TFEVTL+LD+W+ Sbjct: 121 KTVTKEIEIKGLWPTNVGELQLDWDSNNEIQTFEVTLALDYWE 163 >gi|27125|lcl|protein:vir:6595 Length: 164 # NCBI annotation: tail tube protein # Family: family:all:1107 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891726;genbank:gi:33620609;genbank:GeneID :1725319 Length = 164 Score = 203 bits (517), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 85/160 (53%), Positives = 117/160 (73%) Query: 1 MELTDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL 60 ++L DIT+ + +GDFARPNLFEVEIP++G++FK CK A++P VE + + YQN+K+ + Sbjct: 3 LDLNDITRGFESGDFARPNLFEVEIPYLGQNFKLMCKAATVPAATVEKIAIGYQNRKINI 62 Query: 61 AGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKG 120 AGDR ++DWTITV+ND+AH R + W + I G PA YKK+A VRQL+R Sbjct: 63 AGDRVYDDWTITVFNDDAHKIRDAIVAWSDQTHGTGSAITGATPAQYKKQAIVRQLNRNT 122 Query: 121 KSTRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDW 160 +ST + T YG++PTN+ EV L W+QNNEVETFEVT ++DW Sbjct: 123 ESTSEKTLYGIFPTNVGEVTLDWEQNNEVETFEVTFAIDW 162 >gi|25350|lcl|protein:vir:80985 Length: 164 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469500;genbank:gi:157311457;genbank:Ge neID:5602118 Length = 164 Score = 203 bits (517), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 85/160 (53%), Positives = 117/160 (73%) Query: 1 MELTDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL 60 ++L DIT+ + +GDFARPNLFEVEIP++G++FK CK A++P VE + + YQN+K+ + Sbjct: 3 LDLNDITRGFESGDFARPNLFEVEIPYLGQNFKLMCKAATVPAATVEKIAIGYQNRKINI 62 Query: 61 AGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKG 120 AGDR ++DWTITV+ND+AH R + W + I G PA YKK+A VRQL+R Sbjct: 63 AGDRVYDDWTITVFNDDAHKIRDAIVAWSDQTHGTGSAITGATPAQYKKQAIVRQLNRNT 122 Query: 121 KSTRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDW 160 +ST + T YG++PTN+ EV L W+QNNEVETFEVT ++DW Sbjct: 123 ESTSEKTLYGIFPTNVGEVTLDWEQNNEVETFEVTFAIDW 162 >gi|21079|lcl|protein:vir:100597 Length: 163 # NCBI annotation: gp19 tail tube monomer # Family: family:all:1107 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656381;genbank:gi:109290132;genbank:GeneI D:4156575 Length = 163 Score = 194 bits (493), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 83/163 (50%), Positives = 115/163 (70%), Gaps = 1/163 (0%) Query: 1 MELTDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKL 60 M++TD+ +A+ +GDFARPNLFE+EIP++G++FKFK K +MP VE +PV Y N+K+ + Sbjct: 1 MDVTDVLRAFESGDFARPNLFEIEIPYLGQNFKFKAKAGTMPAATVEKIPVGYMNRKLNV 60 Query: 61 AGDRTFEDWTITVYNDEAHNT-RQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRK 119 AGDR F+DWTIT+Y D A T +Q +W + + I G+ P +YKK VRQ DR Sbjct: 61 AGDRIFDDWTITIYTDSAPITLDRQLSDWNAMTHGMGNEITGDIPEAYKKPGIVRQKDRN 120 Query: 120 GKSTRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 G +T++YT G++PTN+ EV L WD NN V TFE T +LDWW+ Sbjct: 121 GNTTKEYTIVGLFPTNVGEVTLDWDDNNTVSTFETTFALDWWE 163 >gi|24014|lcl|protein:vir:104771 Length: 195 # NCBI annotation: T4-like tail tube protein # Family: family:all:1107 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214362;genbank:gi:61806002;genbank:GeneID :3294291 Length = 195 Score = 104 bits (260), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 10/164 (6%) Query: 8 KAYSNGDFARPNLFEVEIPF---------MGKDFKFKCKGASMPPGVVEPVPVSYQNKKM 58 K+ G AR NLFEV + F + +F KGA++P V + V ++ + + Sbjct: 18 KSKLTGGGARANLFEVVLTFPDVAQPDSAVLDKARFLVKGANLPASNVAQIEVPFRGRVL 77 Query: 59 KLAGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDR 118 K+AGDRTF+ WT+TV ND R F W N L N PA Y+ +A V QLDR Sbjct: 78 KIAGDRTFDSWTVTVINDTDFAIRSAFERWSNTINRLSDNTGLTNPADYQSDAYVYQLDR 137 Query: 119 KGKSTRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 G + R Y Y +PT + + LS+D ++ F V L + +W+ Sbjct: 138 DGSTLRSYRFYDTFPTQVGPIELSYDAQG-IQEFTVELQVQYWE 180 >gi|23415|lcl|protein:vir:103176 Length: 202 # NCBI annotation: gp130 # Family: family:all:1107 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717797;genbank:gi:113200634;genbank:GeneI D:4239185 Length = 202 Score = 100 bits (250), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 91/180 (50%), Gaps = 22/180 (12%) Query: 5 DITKAYSNGDFARPNLFEVEIPF---------MGKDFKFKCKGASMPPGVVEPVPVSYQN 55 D KA DFARPNLFEVE+ F + F + A++P + V V ++ Sbjct: 9 DRFKAKVKKDFARPNLFEVELNFPGAIAKGAGAARLGAFTVRAANLPSSQIGVVEVPFRG 68 Query: 56 KKMKLAGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNI-----LGEA--PASYK 108 + +K+AGDRTFE WTITV ND + R+ F +W QA + N LG A A Y Sbjct: 69 RVLKIAGDRTFEPWTITVMNDSSFRLRKIFEKWAQKIQAYNENFTAAGTLGNADDSAGYF 128 Query: 109 KEATVRQLD------RKGKSTRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 + V QL RK + R Y V+P+NI+ + L + N+ +E F V L + +W+ Sbjct: 129 ADMYVHQLSRDIRDGRKPQPLRSYKFIDVFPSNISSIDLDFGSNDAIEEFTVELQVQYWK 188 >gi|22265|lcl|protein:vir:104504 Length: 196 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214664;genbank:gi:61806305;genbank:GeneID :3294559 Length = 196 Score = 99.0 bits (245), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 22/180 (12%) Query: 5 DITKAYSNGDFARPNLFEVEIPFMGKDF---------KFKCKGASMPPGVVEPVPVSYQN 55 D KA DFARPNLF+V++ F + KF + A++P + + V ++ Sbjct: 8 DQFKANVKSDFARPNLFQVDLAFPSEILQDSDLVNLGKFTVRAANLPSSQIGVIEVPFRG 67 Query: 56 KKMKLAGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNI-----LGEAPAS--YK 108 + +K+AGDRTFE WTIT+ ND R W + QA + N LG+ S Y Sbjct: 68 RVLKIAGDRTFEPWTITIMNDSQFKLRSAMELWASSIQAYNENFTSAGSLGDNSDSSGYF 127 Query: 109 KEATVRQLDRKGKS------TRQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 + TV QL R K + Y Y ++P+NIA + L + N+ VE F V + + +W+ Sbjct: 128 ADMTVHQLARDLKDGESPKILKSYKFYNIFPSNIAAIDLDYGNNDAVEEFTVEMQVQYWK 187 >gi|20246|lcl|protein:vir:106918 Length: 204 # NCBI annotation: tail tube protein gp19 # Family: family:all:1107 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195137;genbank:gi:58532914;goa:Q5GQN5;uni prot:Q5GQN5;genbank:GeneID:3260390 Length = 204 Score = 84.3 bits (207), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 23/170 (13%) Query: 13 GDFARPNLFEV------EIPFMGKD---FKFKCKGASMPPGVVEPVPVSYQNKKMKLAGD 63 G +PN+F V E+P D CK A++P + + V ++ + +K+AGD Sbjct: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 Query: 64 RTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAP-------ASYKKEATVRQL 116 RTF+ WT T ND+ R F +W + N AP + Y + V+QL Sbjct: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETN---NAPLFTPSLDSGYARNLKVKQL 129 Query: 117 DRKGKST----RQYTAYGVWPTNIAEVALSWDQNNEVETFEVTLSLDWWQ 162 ++ G + R+Y Y +PTN++++ +++D N+++E F V +W+ Sbjct: 130 EKNGSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWK 179 >gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453630;genbank:gi:84662666;genbank:GeneID :5142566 Length = 483 Score = 25.0 bits (53), Expect = 0.44, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 101 GEAPASYKKEATVRQLDRKGKSTRQYTAYGVW 132 GE P ++ + KGK T + A GVW Sbjct: 303 GELPTAFAQVIMTVDASFKGKETSDFCAIGVW 334 >gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF025 # Family: family:all:1546 # MgeID: mge:163 # MgeName: phiKZ # Cross-refs: genbank:acc:NP_803591;genbank:gi:29134961;genbank:GeneID :1258246 Length = 717 Score = 22.3 bits (46), Expect = 3.3, Method: Compositional matrix adjust. Identities = 7/14 (50%), Positives = 12/14 (85%) Query: 13 GDFARPNLFEVEIP 26 G+++R NLF+V +P Sbjct: 544 GEYSRDNLFKVALP 557 >gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp26 # Family: family:all:523 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655891;genbank:gi:109521463;genbank:GeneI D:4158036 Length = 537 Score = 21.9 bits (45), Expect = 4.6, Method: Compositional matrix adjust. Identities = 17/89 (19%), Positives = 36/89 (40%) Query: 4 TDITKAYSNGDFARPNLFEVEIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKLAGD 63 T++ K + G P++ +E +D + P + + + K+ D Sbjct: 233 TELEKLHDRGMRQDPDMLFMEWCATTRDLDDEENYYRSNPALGYRISIERIRKERNRHSD 292 Query: 64 RTFEDWTITVYNDEAHNTRQQFIEWQNLA 92 +TF + ++ND A N +W++L Sbjct: 293 KTFGRERLGLWNDNAFNAVIPADQWKSLC 321 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.316 0.131 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,356 Number of Sequences: 514 Number of extensions: 3455 Number of successful extensions: 33 Number of sequences better than 100.0: 21 Number of HSP's better than 100.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 21 length of query: 162 length of database: 206,069 effective HSP length: 65 effective length of query: 97 effective length of database: 172,659 effective search space: 16747923 effective search space used: 16747923 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 34 (17.7 bits)