Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 12 lcl|NC_014459.1_cdsid_YP_003856985.1 HHsearch (proba=100.00%)
Portal 8 lcl|NC_014459.1_cdsid_YP_003856981.1 HHsearch (proba=100.00%)
TermL 7 lcl|NC_014459.1_cdsid_YP_003856980.1 Blast (e-value=0)
MTP 17 lcl|NC_014459.1_cdsid_YP_003856990.1 Blast (e-value=7e-98)
Sheath NOT FOUND
Ad1 13 lcl|NC_014459.1_cdsid_YP_003856986.1 HHsearch (proba=100.00%)
Hc1 14 lcl|NC_014459.1_cdsid_YP_003856987.1 HHsearch (proba=100.00%)
Ne1 15 lcl|NC_014459.1_cdsid_YP_003856988.1 HHsearch (proba=100.00%)
Tc1 16 lcl|NC_014459.1_cdsid_YP_003856989.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:2504
protein:vir:7771
protein:vir:41
TM4
Bxz2
A118
82 %
21 %
21 %
Portal protein:vir:2500
protein:vir:99072
protein:vir:98444
TM4
Wildcat
VWB
65 %
25 %
22 %
TermL protein:vir:2499
protein:vir:99915
protein:vir:8315
TM4
Halo
Corndog
76 %
54 %
39 %
MTP protein:vir:2509
protein:vir:99926
protein:vir:94739
TM4
Halo
phi LC3
82 %
66 %
30 %
Ad1 protein:vir:2505
protein:vir:94761
protein:vir:1640
TM4
phi LC3
r1t
56 %
21 %
20 %
Hc1 protein:vir:2506
protein:vir:99923
protein:vir:8190
TM4
Halo
Che9d
69 %
40 %
32 %
Ne1 protein:vir:2507
protein:vir:99924
protein:vir:94763
TM4
Halo
phi LC3
42 %
31 %
16 %
Tc1 protein:vir:2508
protein:vir:99925
protein:vir:98426
TM4
Halo
VWB
71 %
37 %
18 %