Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : CrimD | Genbank acc : NC_014459

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 95

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	12	lcl\|NC_014459.1_cdsid_YP_003856985.1	HHsearch (proba=100.00%)
Portal	8	lcl\|NC_014459.1_cdsid_YP_003856981.1	HHsearch (proba=100.00%)
TermL	7	lcl\|NC_014459.1_cdsid_YP_003856980.1	Blast (e-value=0)
MTP	17	lcl\|NC_014459.1_cdsid_YP_003856990.1	Blast (e-value=7e-98)
Sheath	NOT FOUND
Ad1	13	lcl\|NC_014459.1_cdsid_YP_003856986.1	HHsearch (proba=100.00%)
Hc1	14	lcl\|NC_014459.1_cdsid_YP_003856987.1	HHsearch (proba=100.00%)
Ne1	15	lcl\|NC_014459.1_cdsid_YP_003856988.1	HHsearch (proba=100.00%)
Tc1	16	lcl\|NC_014459.1_cdsid_YP_003856989.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:2504 protein:vir:7771 protein:vir:41	TM4 Bxz2 A118	82 % 21 % 21 %
Portal	protein:vir:2500 protein:vir:99072 protein:vir:98444	TM4 Wildcat VWB	65 % 25 % 22 %
TermL	protein:vir:2499 protein:vir:99915 protein:vir:8315	TM4 Halo Corndog	76 % 54 % 39 %
MTP	protein:vir:2509 protein:vir:99926 protein:vir:94739	TM4 Halo phi LC3	82 % 66 % 30 %
Ad1	protein:vir:2505 protein:vir:94761 protein:vir:1640	TM4 phi LC3 r1t	56 % 21 % 20 %
Hc1	protein:vir:2506 protein:vir:99923 protein:vir:8190	TM4 Halo Che9d	69 % 40 % 32 %
Ne1	protein:vir:2507 protein:vir:99924 protein:vir:94763	TM4 Halo phi LC3	42 % 31 % 16 %
Tc1	protein:vir:2508 protein:vir:99925 protein:vir:98426	TM4 Halo VWB	71 % 37 % 18 %