Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiCTP1 | Genbank acc : NC_014457

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 86

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	12	lcl\|NC_014457.1_cdsid_YP_003856805.1	HHsearch (proba=100.00%)
Portal	4	lcl\|NC_014457.1_cdsid_YP_003856797.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_014457.1_cdsid_YP_003856795.1	Blast (e-value=1e-134)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	16	lcl\|NC_014457.1_cdsid_YP_003856809.1	HHsearch (proba=100.00%)
Tc1	17	lcl\|NC_014457.1_cdsid_YP_003856810.1	HHsearch (proba=95.64%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96490 protein:vir:4902 protein:vir:2736	2972 Sfi11 O1205	32 % 32 % 32 %
Portal	protein:vir:3964 protein:vir:79043 protein:vir:3609	ul36 phiC2 TP901-1	16 % 16 % 15 %
TermL	protein:vir:102941 protein:vir:106551 protein:vir:94806	EJ-1 Lj965 29	53 % 52 % 25 %
Ne1	protein:vir:102190 protein:vir:101508 protein:vir:7449	PBI1 PLot Barnyard	22 % 21 % 18 %
Tc1	protein:vir:106593 protein:vir:99537 protein:vir:96485	187 Lj928 2972	16 % 11 % 13 %