Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Xfas53 | Genbank acc : NC_013599

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 45

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	34	lcl\|NC_013599.1_cdsid_YP_003344924.1	HHsearch (proba=100.00%)
Portal	32	lcl\|NC_013599.1_cdsid_YP_003344922.1	HHsearch (proba=100.00%)
TermL	31	lcl\|NC_013599.1_cdsid_YP_003344921.1	Blast (e-value=1e-108)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	35	lcl\|NC_013599.1_cdsid_YP_003344925.1	HHsearch (proba=100.00%)
Hc3	36	lcl\|NC_013599.1_cdsid_YP_003344926.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:108303 protein:vir:105522 protein:vir:80180	BA3 phiSG1 Pf-WMP3	27 % 18 % 17 %
Portal	protein:vir:108295 protein:vir:105520 protein:vir:105429	BA3 phiSG1 Sf6	34 % 25 % 25 %
TermL	protein:vir:77595 protein:vir:100942 protein:vir:9262	P22 ST104 ST64T	46 % 46 % 45 %
Ad3	protein:vir:105380 protein:vir:176 protein:vir:100918	Sf6 HK620 ST104	24 % 24 % 23 %
Hc3	protein:vir:108312 protein:vir:3529 protein:vir:100960	BA3 APSE-1 ST104	29 % 20 % 19 %