Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P22 | Genbank acc : NC_002371 | Aclame index mge :46

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 72

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:2106\|NCBI_annot:coat	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:77597\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:77595\|NCBI_annot:terminase	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	7	lcl\|Aclame:protein:vir:2108\|NCBI_annot:head	HHsearch (proba=100.00%)
Hc3	8	lcl\|Aclame:protein:vir:2109\|NCBI_annot:head	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:2106 protein:vir:100939 protein:vir:9265	P22 ST104 ST64T	100 % 99 % 99 %
Portal	protein:vir:77597 protein:vir:100920 protein:vir:9263	P22 ST104 ST64T	100 % 98 % 98 %
TermL	protein:vir:77595 protein:vir:100942 protein:vir:9262	P22 ST104 ST64T	100 % 99 % 99 %
Ad3	protein:vir:2108 protein:vir:100918 protein:vir:9267	P22 ST104 ST64T	100 % 97 % 97 %
Hc3	protein:vir:2109 protein:vir:100960 protein:vir:9268	P22 ST104 ST64T	99 % 95 % 95 %