Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Pf-WMP3 | Genbank acc : NC_009551 | Aclame index mge :1878

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 41

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	32	lcl\|Aclame:protein:vir:80180\|NCBI_annot:capsid	HHsearch (proba=100.00%)
Portal	34	lcl\|Aclame:protein:vir:80165\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	36	lcl\|Aclame:protein:vir:80169\|NCBI_annot:terminase\|genbank:acc:YP_001285801;genbank:gi:148747835;genb	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	31	lcl\|Aclame:protein:vir:80185\|NCBI_annot:tail	HHsearch (proba=100.00%)
Hc3	30	lcl\|Aclame:protein:vir:80177\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80180 protein:vir:94622 protein:vir:100057	Pf-WMP3 Pf-WMP4 P-SSP7	100 % 38 % 20 %
Portal	protein:vir:80165 protein:vir:94599 protein:vir:95449	Pf-WMP3 Pf-WMP4 PA11	100 % 32 % 19 %
TermL	protein:vir:80169 protein:vir:94598 protein:vir:2600	Pf-WMP3 Pf-WMP4 SIO1	100 % 32 % 25 %
Ad3	protein:vir:80185 protein:vir:94601 protein:vir:6325	Pf-WMP3 Pf-WMP4 phiKMV	100 % 31 % 19 %
Hc3	protein:vir:80177 protein:vir:94602 protein:vir:2625	Pf-WMP3 Pf-WMP4 SIO1	100 % 30 % 22 %