Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : HK620 | Genbank acc : NC_002730 | Aclame index mge :5

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 58

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	46	lcl\|Aclame:protein:vir:174\|NCBI_annot:capsid	HHsearch (proba=100.00%)
Portal	44	lcl\|Aclame:protein:vir:172\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	43	lcl\|Aclame:protein:vir:171\|NCBI_annot:terminase	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	48	lcl\|Aclame:protein:vir:176\|NCBI_annot:DNA	HHsearch (proba=100.00%)
Hc3	49	lcl\|Aclame:protein:vir:177\|NCBI_annot:DNA	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:174 protein:vir:105374 protein:vir:105522	HK620 Sf6 phiSG1	100 % 99 % 80 %
Portal	protein:vir:172 protein:vir:105429 protein:vir:105520	HK620 Sf6 phiSG1	100 % 99 % 81 %
TermL	protein:vir:171 protein:vir:105417 protein:vir:3519	HK620 Sf6 APSE-1	100 % 99 % 39 %
Ad3	protein:vir:176 protein:vir:105380 protein:vir:3528	HK620 Sf6 APSE-1	100 % 99 % 58 %
Hc3	protein:vir:177 protein:vir:105428 protein:vir:9268	HK620 Sf6 ST64T	100 % 99 % 93 %