Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : ST104 | Genbank acc : NC_005841 | Aclame index mge :1509

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 63

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	52	lcl\|Aclame:protein:vir:100939\|NCBI_annot:Gp5\|genbank:acc:YP_006408;genbank:gi:46358700;genbank:GeneI	HHsearch (proba=100.00%)
Portal	50	lcl\|Aclame:protein:vir:100920\|NCBI_annot:Gp1\|genbank:acc:YP_006406;genbank:gi:46358698;genbank:GeneI	HHsearch (proba=100.00%)
TermL	49	lcl\|Aclame:protein:vir:100942\|NCBI_annot:Gp2\|genbank:acc:YP_006405;genbank:gi:46358697;genbank:GeneI	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	54	lcl\|Aclame:protein:vir:100918\|NCBI_annot:Gp4\|genbank:acc:YP_006410;genbank:gi:46358702;genbank:GeneI	HHsearch (proba=100.00%)
Hc3	55	lcl\|Aclame:protein:vir:100960\|NCBI_annot:gp10\|genbank:acc:YP_006412;genbank:gi:46358704;genbank:Gene	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:100939 protein:vir:9265 protein:vir:2106	ST104 ST64T P22	100 % 100 % 99 %
Portal	protein:vir:100920 protein:vir:9263 protein:vir:77597	ST104 ST64T P22	100 % 99 % 98 %
TermL	protein:vir:100942 protein:vir:9262 protein:vir:77595	ST104 ST64T P22	100 % 99 % 99 %
Ad3	protein:vir:100918 protein:vir:2108 protein:vir:9267	ST104 P22 ST64T	100 % 97 % 96 %
Hc3	protein:vir:100960 protein:vir:9268 protein:vir:2109	ST104 ST64T P22	99 % 97 % 95 %