Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : APSE-1 | Genbank acc : NC_000935 | Aclame index mge :72

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 54

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	24	lcl\|Aclame:protein:vir:3525\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	19	lcl\|Aclame:protein:vir:3520\|NCBI_annot:P19\|genbank:acc:NP_050980;genbank:gi:9633566;genbank:GeneID:1	HHsearch (proba=100.00%)
TermL	18	lcl\|Aclame:protein:vir:3519\|NCBI_annot:P18\|genbank:acc:NP_050979;genbank:gi:9633565;genbank:GeneID:1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	27	lcl\|Aclame:protein:vir:3528\|NCBI_annot:P27\|genbank:acc:NP_050988;genbank:gi:9633574;genbank:GeneID:1	HHsearch (proba=100.00%)
Hc3	28	lcl\|Aclame:protein:vir:3529\|NCBI_annot:P28\|genbank:acc:NP_050989;genbank:gi:9633575;genbank:GeneID:1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3525 protein:vir:105522 protein:vir:105374	APSE-1 phiSG1 Sf6	100 % 82 % 79 %
Portal	protein:vir:3520 protein:vir:105429 protein:vir:172	APSE-1 Sf6 HK620	100 % 71 % 71 %
TermL	protein:vir:3519 protein:vir:105417 protein:vir:171	APSE-1 Sf6 HK620	100 % 39 % 39 %
Ad3	protein:vir:3528 protein:vir:105380 protein:vir:176	APSE-1 Sf6 HK620	100 % 58 % 58 %
Hc3	protein:vir:3529 protein:vir:105525 protein:vir:9268	APSE-1 phiSG1 ST64T	100 % 61 % 61 %