Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : BA3 | Genbank acc : NC_009990 | Aclame index mge :2007

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 47

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	13	lcl\|Aclame:protein:vir:108303\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	15	lcl\|Aclame:protein:vir:108295\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	17	lcl\|Aclame:protein:vir:108299\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	10	lcl\|Aclame:protein:vir:108311\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc3	9	lcl\|Aclame:protein:vir:108312\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:108303 protein:vir:105374 protein:vir:105522	BA3 Sf6 phiSG1	100 % 24 % 24 %
Portal	protein:vir:108295 protein:vir:105429 protein:vir:105520	BA3 Sf6 phiSG1	100 % 25 % 25 %
TermL	protein:vir:108299 protein:vir:93626 protein:vir:105593	BA3 Bcep22 F116	100 % 17 % 17 %
Ad3	protein:vir:108311 protein:vir:105380 protein:vir:176	BA3 Sf6 HK620	100 % 22 % 22 %
Hc3	protein:vir:108312 protein:vir:3529 protein:vir:105428	BA3 APSE-1 Sf6	100 % 22 % 20 %