Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|NC_012884.1_cdsid_YP_002995463.1 HHsearch (proba=100.00%)
Portal 4 lcl|NC_012884.1_cdsid_YP_002995461.1 HHsearch (proba=100.00%)
TermL 3 lcl|NC_012884.1_cdsid_YP_002995460.1 Blast (e-value=1e-138)
MTP 11 lcl|NC_012884.1_cdsid_YP_002995468.1 Blast (e-value=2e-37)
Sheath NOT FOUND
Ad1 7 lcl|NC_012884.1_cdsid_YP_002995464.1 HHsearch (proba=97.54%)
Hc1 8 lcl|NC_012884.1_cdsid_YP_002995465.1 HHsearch (proba=99.33%)
Ne1 9 lcl|NC_012884.1_cdsid_YP_002995466.1 HHsearch (proba=100.00%)
Tc1 10 lcl|NC_012884.1_cdsid_YP_002995467.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:4856
protein:vir:7409
protein:vir:1025
DT1
P335
bIL286
22 %
21 %
21 %
Portal protein:vir:4854
protein:vir:4995
protein:vir:4828
DT1
Sfi21
7201
34 %
33 %
33 %
TermL protein:vir:4852
protein:vir:4826
protein:vir:4993
DT1
7201
Sfi21
42 %
39 %
39 %
MTP protein:vir:5002
protein:vir:4957
protein:vir:4861
Sfi21
Sfi19
DT1
38 %
37 %
37 %
Ad1 protein:vir:4998
protein:vir:102083
protein:vir:102863
Sfi21
Fah
Cherry
25 %
22 %
22 %
Hc1 protein:vir:4832
protein:vir:4858
protein:vir:4955
7201
DT1
Sfi19
24 %
23 %
24 %
Ne1 protein:vir:1087
protein:vir:102085
protein:vir:102875
bIL309
Fah
Cherry
29 %
30 %
30 %
Tc1 protein:vir:4860
protein:vir:4834
protein:vir:5001
DT1
7201
Sfi21
26 %
26 %
25 %