Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : M102 | Genbank acc : NC_012884

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 41

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|NC_012884.1_cdsid_YP_002995463.1	HHsearch (proba=100.00%)
Portal	4	lcl\|NC_012884.1_cdsid_YP_002995461.1	HHsearch (proba=100.00%)
TermL	3	lcl\|NC_012884.1_cdsid_YP_002995460.1	Blast (e-value=1e-138)
MTP	11	lcl\|NC_012884.1_cdsid_YP_002995468.1	Blast (e-value=2e-37)
Sheath	NOT FOUND
Ad1	7	lcl\|NC_012884.1_cdsid_YP_002995464.1	HHsearch (proba=97.54%)
Hc1	8	lcl\|NC_012884.1_cdsid_YP_002995465.1	HHsearch (proba=99.33%)
Ne1	9	lcl\|NC_012884.1_cdsid_YP_002995466.1	HHsearch (proba=100.00%)
Tc1	10	lcl\|NC_012884.1_cdsid_YP_002995467.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4856 protein:vir:7409 protein:vir:1025	DT1 P335 bIL286	22 % 21 % 21 %
Portal	protein:vir:4854 protein:vir:4995 protein:vir:4828	DT1 Sfi21 7201	34 % 33 % 33 %
TermL	protein:vir:4852 protein:vir:4826 protein:vir:4993	DT1 7201 Sfi21	42 % 39 % 39 %
MTP	protein:vir:5002 protein:vir:4957 protein:vir:4861	Sfi21 Sfi19 DT1	38 % 37 % 37 %
Ad1	protein:vir:4998 protein:vir:102083 protein:vir:102863	Sfi21 Fah Cherry	25 % 22 % 22 %
Hc1	protein:vir:4832 protein:vir:4858 protein:vir:4955	7201 DT1 Sfi19	24 % 23 % 24 %
Ne1	protein:vir:1087 protein:vir:102085 protein:vir:102875	bIL309 Fah Cherry	29 % 30 % 30 %
Tc1	protein:vir:4860 protein:vir:4834 protein:vir:5001	DT1 7201 Sfi21	26 % 26 % 25 %