Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : IEBH | Genbank acc : NC_011167

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 86

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	53	lcl\|NC_011167.1_cdsid_YP_002154378.1	HHsearch (proba=100.00%)
Portal	50	lcl\|NC_011167.1_cdsid_YP_002154375.1	HHsearch (proba=100.00%)
TermL	49	lcl\|NC_011167.1_cdsid_YP_002154374.1	Blast (e-value=1e-167)
MTP	59	lcl\|NC_011167.1_cdsid_YP_002154384.1	Blast (e-value=2e-25)
Sheath	NOT FOUND
Ad1	55	lcl\|NC_011167.1_cdsid_YP_002154380.1	HHsearch (proba=100.00%)
Hc1	56	lcl\|NC_011167.1_cdsid_YP_002154381.1	HHsearch (proba=100.00%)
Ne1	57	lcl\|NC_011167.1_cdsid_YP_002154382.1	HHsearch (proba=100.00%)
Tc1	58	lcl\|NC_011167.1_cdsid_YP_002154383.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79008 protein:vir:105464 protein:vir:99523	phiC2 KC5a Lj928	48 % 45 % 29 %
Portal	protein:vir:80959 protein:vir:38 protein:vir:98883	A500 A118 BCJA1c	42 % 41 % 33 %
TermL	protein:vir:80960 protein:vir:37 protein:vir:4781	A500 A118 MM1	64 % 64 % 51 %
MTP	protein:vir:1579 protein:vir:80923 protein:vir:47	phig1e A500 A118	39 % 31 % 31 %
Ad1	protein:vir:80967 protein:vir:43 protein:vir:98900	A500 A118 BCJA1c	24 % 24 % 22 %
Hc1	protein:vir:44 protein:vir:80934 protein:vir:98924	A118 A500 BCJA1c	33 % 31 % 23 %
Ne1	protein:vir:80970 protein:vir:45 protein:vir:9823	A500 A118 315.4	31 % 30 % 28 %
Tc1	protein:vir:4791 protein:vir:9824 protein:vir:3037	MM1 315.4 PhiNIH1.1	24 % 23 % 23 %