BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:78781|NCBI_annot:putative terminase large subunit|genbank:acc:YP_001285645;genbank:gi:148727151;genbank:Ge neID:5220131 (604 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: pu... 1254 0.0 gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: puta... 696 0.0 gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf... 578 e-167 gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: ter... 577 e-166 gi|2683|lcl|protein:vir:98854 Length: 603 # NCBI annotation: hyp... 572 e-165 gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: pre... 441 e-126 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 436 e-124 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 436 e-124 gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp... 435 e-124 gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP... 424 e-120 gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP... 424 e-120 gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP... 424 e-120 gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: te... 421 e-119 gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3... 410 e-116 gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: te... 380 e-107 gi|13742|lcl|protein:vir:1826 Length: 248 # NCBI annotation: W p... 110 5e-26 gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: lar... 55 2e-09 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 39 2e-04 gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unkn... 39 2e-04 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 38 3e-04 gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: t... 33 0.009 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 33 0.010 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 32 0.014 gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: g... 32 0.023 gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: P... 32 0.025 gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: te... 31 0.033 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 31 0.049 gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: g... 30 0.11 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 30 0.11 gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: t... 29 0.14 gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp1... 29 0.15 gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp1... 28 0.31 gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: g... 28 0.34 gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: sim... 27 0.48 gi|26943|lcl|protein:vir:5662 Length: 600 # NCBI annotation: ter... 27 0.81 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 25 1.8 gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp... 24 4.8 gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypo... 23 8.2 gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hy... 23 8.2 gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putati... 23 8.2 gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hyp... 23 8.2 gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hyp... 23 8.2 gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: pu... 23 8.2 >gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: putative terminase large subunit # Family: family:all:169 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285645;genbank:gi:148727151;genbank:Ge neID:5220131 Length = 604 Score = 1254 bits (3246), Expect = 0.0, Method: Compositional matrix adjust. Identities = 604/604 (100%), Positives = 604/604 (100%) Query: 1 MAYPEEIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINR 60 MAYPEEIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINR Sbjct: 1 MAYPEEIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINR 60 Query: 61 RVQVLLHREKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRGKR 120 RVQVLLHREKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRGKR Sbjct: 61 RVQVLLHREKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRGKR 120 Query: 121 EHNSQGGGGRKGGKKAKNEIGHLTADDFTEWLGTLFGYQLRVREAKNDPALPRTRNILKS 180 EHNSQGGGGRKGGKKAKNEIGHLTADDFTEWLGTLFGYQLRVREAKNDPALPRTRNILKS Sbjct: 121 EHNSQGGGGRKGGKKAKNEIGHLTADDFTEWLGTLFGYQLRVREAKNDPALPRTRNILKS 180 Query: 181 RQIGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVL 240 RQIGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVL Sbjct: 181 RQIGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVL 240 Query: 241 SNGAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSS 300 SNGAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSS Sbjct: 241 SNGAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSS 300 Query: 301 KVHEAYRFWTGDRWKGQRPSRVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGCHL 360 KVHEAYRFWTGDRWKGQRPSRVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGCHL Sbjct: 301 KVHEAYRFWTGDRWKGQRPSRVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGCHL 360 Query: 361 IDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTRWEDYKPGRPDPFGRR 420 IDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTRWEDYKPGRPDPFGRR Sbjct: 361 IDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTRWEDYKPGRPDPFGRR 420 Query: 421 EVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRVT 480 EVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRVT Sbjct: 421 EVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRVT 480 Query: 481 YLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSDRDI 540 YLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSDRDI Sbjct: 481 YLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSDRDI 540 Query: 541 PLAFLAIKRSTTGGGQMTFRAARDNVTGHADVFFAIAHAVANEPLDTHRKRKSTWATSQE 600 PLAFLAIKRSTTGGGQMTFRAARDNVTGHADVFFAIAHAVANEPLDTHRKRKSTWATSQE Sbjct: 541 PLAFLAIKRSTTGGGQMTFRAARDNVTGHADVFFAIAHAVANEPLDTHRKRKSTWATSQE 600 Query: 601 KKAA 604 KKAA Sbjct: 601 KKAA 604 >gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: putative terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536648;genbank:gi:17975126;genbank:GeneID :929082 Length = 605 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/607 (56%), Positives = 432/607 (71%), Gaps = 18/607 (2%) Query: 1 MAYPEEIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINR 60 MAY EIR AA+ LYLK WTP+EI DEL LNS RIIYYWA+K GWRD+L E+ +++AI Sbjct: 1 MAYSPEIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIAN 60 Query: 61 RVQVLLHREKKTPGEQEELDRLIGHHVSLK-----EKALKWAEREQALKAQRAEGSEPGP 115 R+Q LL E + + + LDRLI HHV LK E+ + E A S+ G Sbjct: 61 RIQTLLEVENPSKPQLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGS 120 Query: 116 SRGKREHNSQGGGGRKGG------KKAKNEIGHLTADDFTEWLGTLFGYQLRVREAKNDP 169 K E +Q G K KK KN++ +T DF W +LF YQ +R + Sbjct: 121 P--KAESGTQTGDSGKQSAPSGKRKKVKNDVSEITEADFKLWHDSLFAYQHTMRNNLHQ- 177 Query: 170 ALPRTRNILKSRQIGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFL 229 RTRNILKSRQIG TYYFAGEALE AILTG NQIFLSA+RAQA+VFR YI IA+ FL Sbjct: 178 ---RTRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFL 234 Query: 230 GVTLTGNPIVLSNGAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSH 289 G+ +TGNP LSNGAELH+ STN +AQS G+VYIDEYFWI F++L+ VASAMAT Sbjct: 235 GIEITGNPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKK 294 Query: 290 WRKTYFSTPSSKVHEAYRFWTGDRWKGQRPSRVAIDFPGEDDLRDGGRICPDRQWRYVIT 349 WRKTYFSTPSSK+H AY FWTG++W+G + +R I+FP D+LRDGGR+CPD+QWRYV+T Sbjct: 295 WRKTYFSTPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVT 354 Query: 350 IEDAIRLGCHLIDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTRWEDY 409 IEDA + GC L DIEEL++EY E F+ L+MC F+D A S+F+F +ER VD W+DY Sbjct: 355 IEDAAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQDY 414 Query: 410 KPGRPDPFGRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQE 469 KP PFG REVW+GYDPSRTRDNA L+VVAPP VA E+FRVLEKH WRGL+FQ+QA E Sbjct: 415 KPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASE 474 Query: 470 IERIAKKFRVTYLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEAN 529 I ++ ++F VTYLG+D++GIGAGV+DLL I+YS E+K+RLV+KMID+++ N Sbjct: 475 ISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGN 534 Query: 530 RIEWDSSDRDIPLAFLAIKR-STTGGGQMTFRAARDNVTGHADVFFAIAHAVANEPLDTH 588 R+++D+ ++ +AF+AIKR +T G MTF+A R GHAD F+A++HA+ NEPLD Sbjct: 535 RLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLDHS 594 Query: 589 RKRKSTW 595 +RKSTW Sbjct: 595 TQRKSTW 601 >gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf15 # Family: family:all:169 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043485;genbank:gi:9628620;genbank:GeneID: 1261142 Length = 607 Score = 578 bits (1490), Expect = e-167, Method: Compositional matrix adjust. Identities = 289/600 (48%), Positives = 401/600 (66%), Gaps = 9/600 (1%) Query: 3 YPEEIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRV 62 Y +E+ AAK LYLK++TP+EI +ELGLNS R IYYWAEK WR+LL+E +E+ I R+ Sbjct: 14 YDDEVIYAAKFLYLKKYTPKEIAEELGLNSRRPIYYWAEKYNWRNLLSESGIEELIALRI 73 Query: 63 QVLLHREKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRGKREH 122 L RE K+ E +EL+ LI + K++ A + A+ A S + Sbjct: 74 ITLTERENKSDQEIKELEALIDKDIQYKKQR---AATVAKVTAKSAVNSADVSGNERAFA 130 Query: 123 NSQGGGGRKGGKKAKNEIGHLTADDFTEWLGTLFGYQLRVREAKNDPALPRTRNILKSRQ 182 +S G RK K+ KN+I H+T + ++ +LF YQ +R K+ RNILKSRQ Sbjct: 131 DSGDGDERKKKKRVKNDISHVTPEMCQPFIDSLFDYQKHIRSNKHHD----VRNILKSRQ 186 Query: 183 IGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVLSN 242 IG TYYF+ EALEDAI +G NQIFLSA++ QAE+F++YI K+A+ + GV LTGNPI+LSN Sbjct: 187 IGATYYFSFEALEDAIFSGDNQIFLSASKRQAEIFKNYIVKMAREYFGVELTGNPIILSN 246 Query: 243 GAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSKV 302 GAELHF STN N++Q SG+VY DEY WI +F++ DVASAMAT WR+TYFSTPSSK Sbjct: 247 GAELHFLSTNKNTSQGNSGHVYGDEYAWIRDFQRFDDVASAMATHEKWRETYFSTPSSKF 306 Query: 303 HEAYRFWTGDRWKGQRPSRVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGC-HLI 361 HE+Y FW+GD W+ P R + FP +LRDGGR+CPD QWRYV+TIEDA++ G L Sbjct: 307 HESYSFWSGDNWRDGDPKRKNVPFPTFAELRDGGRLCPDGQWRYVVTIEDALKGGADKLF 366 Query: 362 DIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTRWEDYKPGRPDPFGRRE 421 +IE+LK Y + F++LYMC +IDDA S+F + + + GVD +W+D+ P PFG RE Sbjct: 367 NIEKLKQRYSKYAFNQLYMCIWIDDADSIFNVKQLLKCGVDIAKWKDFNPKADRPFGDRE 426 Query: 422 VWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRVTY 481 VW G+DP+ + D A+ V++APP + GE++R+L ++ W GL++ YQA +I + +K+ +TY Sbjct: 427 VWGGFDPAHSGDGASFVIIAPPALPGEKYRMLARYQWHGLSYVYQANQIRALYEKYNMTY 486 Query: 482 LGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSDRDIP 541 +G+D +G+G GVY+L+K + I Y+ ESK+ +VLK+ D+VE +IEW S+ DI Sbjct: 487 IGIDATGVGYGVYELVKEFARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSESELDIV 546 Query: 542 LAFLAIK-RSTTGGGQMTFRAARDNVTGHADVFFAIAHAVANEPLDTHRKRKSTWATSQE 600 +FL IK +ST G MTF A R T HADVFFAI +A+ + L +++ W+ E Sbjct: 547 PSFLMIKHQSTKSGNTMTFTAERTVKTQHADVFFAICNAINKKSLSDKPRKRRRWSVLNE 606 >gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536821;genbank:gi:17981830;genbank:GeneID :929209 Length = 607 Score = 577 bits (1486), Expect = e-166, Method: Compositional matrix adjust. Identities = 287/600 (47%), Positives = 402/600 (67%), Gaps = 9/600 (1%) Query: 3 YPEEIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRV 62 Y +E+ AAK LYLK++TP+EI +ELGLNS R IYYWAEK WR+L++E +E+ I R+ Sbjct: 14 YDDEVIYAAKFLYLKKYTPKEIAEELGLNSTRPIYYWAEKYNWRNLISESGIEELIALRI 73 Query: 63 QVLLHREKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRGKREH 122 L RE K+ E +EL+ LI + K++ A + A+ A S S + Sbjct: 74 ITLTERENKSDQEIKELEALIDKDIQYKKQR---AATVAKVTAKSAVNSADVSSSDRSFA 130 Query: 123 NSQGGGGRKGGKKAKNEIGHLTADDFTEWLGTLFGYQLRVREAKNDPALPRTRNILKSRQ 182 +S G K K+ KN+I H++ + ++ +LF YQ +R K+ RNILKSRQ Sbjct: 131 DSGDGDEHKKKKRVKNDISHVSPEMCQPFIDSLFDYQKHIRANKHHD----VRNILKSRQ 186 Query: 183 IGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVLSN 242 IG TYYF+ EALEDAI +G NQIFLSA++ QAE+F++YI K+A+ + GV LTGNPI+LSN Sbjct: 187 IGATYYFSFEALEDAIFSGDNQIFLSASKRQAEIFKNYIVKMAREYFGVELTGNPIILSN 246 Query: 243 GAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSKV 302 GAELHF STN N++Q SG+VY DEY WI +F++ +DVASAMAT + WR+TYFSTPSSK Sbjct: 247 GAELHFLSTNKNTSQGNSGHVYGDEYAWIRDFQRFNDVASAMATHAKWRETYFSTPSSKF 306 Query: 303 HEAYRFWTGDRWKGQRPSRVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGC-HLI 361 HE+Y FW+GD W+ P R + FP +LRDGGR+CPD QWRYV+TIEDA++ G L Sbjct: 307 HESYSFWSGDNWRDGDPKRKNVPFPTFAELRDGGRLCPDGQWRYVVTIEDALKGGAGTLF 366 Query: 362 DIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTRWEDYKPGRPDPFGRRE 421 +IE+LK Y + F++LYMC +IDDA S+F + + GVD ++W+D+ P PFG RE Sbjct: 367 NIEKLKQRYSKYAFNQLYMCVWIDDADSIFTVHQLLKCGVDISKWKDFNPKADRPFGDRE 426 Query: 422 VWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRVTY 481 VW G+DP+ + D A+ V++APP + E++RVL ++ W GL++ YQA +I + +K+ +TY Sbjct: 427 VWGGFDPAHSGDGASFVIIAPPALPSEKYRVLARYQWNGLSYVYQANQIRALYEKYNMTY 486 Query: 482 LGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSDRDIP 541 +G+D +G+G GVY+L+K + I Y+ ESK+ +VLK+ D+VE +IEW S+ DI Sbjct: 487 IGIDATGVGYGVYELVKEFARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSESELDIV 546 Query: 542 LAFLAIK-RSTTGGGQMTFRAARDNVTGHADVFFAIAHAVANEPLDTHRKRKSTWATSQE 600 +FL IK +ST G MTF A R T HADVFFAI +A+ + L +++ W+ E Sbjct: 547 PSFLMIKHQSTKSGNTMTFTAERTVKTQHADVFFAICNAINKKSLSDKPRKRRGWSVLNE 606 >gi|2683|lcl|protein:vir:98854 Length: 603 # NCBI annotation: hypothetical protein # Family: family:all:169 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654730;genbank:gi:109302915;genbank:GeneI D:4156059 Length = 603 Score = 572 bits (1474), Expect = e-165, Method: Compositional matrix adjust. Identities = 290/593 (48%), Positives = 396/593 (66%), Gaps = 9/593 (1%) Query: 3 YPEEIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRV 62 Y +E+ +AK LYLK+WTP EI EL LNS R IYYWAEK WR+L+ E +E+ I R+ Sbjct: 13 YDDEVIYSAKFLYLKKWTPNEIAKELSLNSARPIYYWAEKYNWRNLINENGIEELIALRI 72 Query: 63 QVLLHREKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRGKREH 122 L RE KT E +EL+ LI + K++ K A+ Q +E G H Sbjct: 73 ITLTERENKTDQEIKELEALIDKDIEYKKQRAKKAQSAQKSAVTLSESFGDFADSG---H 129 Query: 123 NSQGGGGRKGGKKAKNEIGHLTADDFTEWLGTLFGYQLRVREAKNDPALPRTRNILKSRQ 182 + G +K K+AKN+I H+T + ++ +LF YQ R K+ RNILKSRQ Sbjct: 130 GNDGDNKKKSKKRAKNDISHVTPEMVQPFIDSLFDYQKHCRANKHHS----VRNILKSRQ 185 Query: 183 IGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVLSN 242 IG TYYFA EALEDAI TG NQIFLSA++ QAE+F++YI K+A+ + V L G+PI+LSN Sbjct: 186 IGATYYFAFEALEDAIFTGDNQIFLSASKRQAEIFKTYIIKMARAYFDVELKGSPIILSN 245 Query: 243 GAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSKV 302 GAELHF +TN+N++Q SG+VY DEY WI +FE+ + V+SAMAT HWR+TYFSTPSSK Sbjct: 246 GAELHFLATNANTSQGNSGHVYGDEYAWIRDFERFNTVSSAMATHKHWRETYFSTPSSKF 305 Query: 303 HEAYRFWTGDRWKGQRPSRVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGCH-LI 361 H +Y FW+GD WK P R + FP ++LRDGGR CPD WRYVITIEDA++ G L Sbjct: 306 HPSYAFWSGDMWKEGDPKRANVVFPSFEELRDGGRFCPDGTWRYVITIEDALKGGAGVLF 365 Query: 362 DIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTRWEDYKPGRPDPFGRRE 421 DI+ LK +Y + F +L+MC ++DDA S+F + + + GVD +W+D+ P PFG RE Sbjct: 366 DIDALKQKYSKYAFAQLFMCVWVDDADSIFNIKKLLKCGVDIAKWKDHNPNDARPFGARE 425 Query: 422 VWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRVTY 481 VW GYDP+ + D A+ V+VAPP + E++RVL ++ W GL+++YQA +I+++ +K+ +TY Sbjct: 426 VWGGYDPAHSGDGASFVIVAPPALLKEKYRVLARYQWNGLSYKYQAAQIKQLFEKYNMTY 485 Query: 482 LGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSDRDIP 541 +G+D +G+G GVY+ +K P+ Y+ ESK+ +VLK+ D+VE +IEWD ++RDI Sbjct: 486 IGIDATGVGYGVYEQVKEFAGRKAVPLVYNPESKTEMVLKVHDLVEHEQIEWDENERDIV 545 Query: 542 LAFLAIKR-STTGGGQMTFRAARDNVTGHADVFFAIAHAVANEPLDTHRKRKS 593 +FL IK ST G MTF A R T HADVFFAIA+A+ N+ L +RKS Sbjct: 546 PSFLMIKHTSTKSGNTMTFVAERTVKTQHADVFFAIANAINNKSLTDKPRRKS 598 >gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: predicted DNA-dependent ATPase terminase subunit # Family: family:all:169 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490600;genbank:gi:17313220;genbank:GeneID :927317 Length = 594 Score = 441 bits (1135), Expect = e-126, Method: Compositional matrix adjust. Identities = 252/587 (42%), Positives = 353/587 (60%), Gaps = 34/587 (5%) Query: 8 RNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRVQVLLH 67 R AK LY W +I D LG + ++ W ++ GW + E + A+ R+ L+ Sbjct: 20 RRQAKFLYWMGWRVCDIADHLGEKD-KTLHSWKDRDGWDRADSVERIGGALEARLVQLIL 78 Query: 68 REKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEG----SEPGPSRGKREHN 123 ++ KT G+ +E+D L H L+ +A + QR +G ++ P KR Sbjct: 79 KDGKTGGDYKEIDLL---HRQLERQA----------RIQRYQGGGTETDLNPELAKRNEG 125 Query: 124 SQGGGGRKGGKKAKNEIGHLTADDFTE-WLGTLFGYQLRVREAKNDPALPRTRNILKSRQ 182 + K +N+I + E +L F YQ A N RTR ILKSRQ Sbjct: 126 PKR-------KPKRNDISEELTEKLVEAFLDGCFDYQKDWYRAGNQ----RTRVILKSRQ 174 Query: 183 IGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVLSN 242 IG T+YFA EAL DA+ TG NQIFLSA++AQA +F++YI A+ +GV L G+PI+L N Sbjct: 175 IGATFYFAREALIDALETGRNQIFLSASKAQAHIFKAYIQAFARDAVGVELKGDPIILPN 234 Query: 243 GAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSKV 302 GAELHF TN+ +AQ GN Y DE+FW F++L+ VAS MA Q +R+TYFSTPSS Sbjct: 235 GAELHFLGTNARTAQGYHGNFYFDEFFWTFKFKELNKVASGMAMQKRYRRTYFSTPSSMA 294 Query: 303 HEAYRFWTGDRWKGQRPSRVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGCHLID 362 HEAY FWTG+R+ +P+ I D GR+C DR WR ++TI DA GC L D Sbjct: 295 HEAYTFWTGERFNKGKPAADRIKIDVSHDALQQGRLCEDRIWRQIVTILDAEARGCDLFD 354 Query: 363 IEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDP-TRW-EDYKPGRPDPFGRR 420 I+EL+ EY E F L MC+F+DD S+F ++ VD W EDYKP PFG R Sbjct: 355 IDELRLEYDAEAFQNLLMCQFVDDGASIFPLTMLQPCMVDSWDLWSEDYKPFALRPFGDR 414 Query: 421 EVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRVT 480 +VW+GYDP+ T D A LVVVAPP V G +FRVLE+H +RG +F QA+ I ++ +++ VT Sbjct: 415 QVWLGYDPAETGDTAGLVVVAPPAVPGGKFRVLERHQFRGKDFAEQAEFIRKVTQRYWVT 474 Query: 481 YLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSDRDI 540 Y+GVD +G+G+GV L++ F GV +YS E K++LV+K V++ R+E+D+ D+ Sbjct: 475 YIGVDTTGMGSGVAQLVRQFFPGV-RTFSYSPEVKTQLVMKAWSVIKNGRLEFDAGWTDL 533 Query: 541 PLAFLAIKRSTTGGG-QMTFRAARDNVTGHADVFFAIAHAVANEPLD 586 A +AI+++ T GG Q T+ A R++ TGHAD+ +A+ HA+ NEPL+ Sbjct: 534 AQALMAIRKTITAGGRQFTYTAGRNDNTGHADLAWALFHALQNEPLE 580 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 436 bits (1122), Expect = e-124, Method: Compositional matrix adjust. Identities = 256/590 (43%), Positives = 347/590 (58%), Gaps = 38/590 (6%) Query: 6 EIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRVQVL 65 ++R A+ LY + W I L + + W + W+D E +E ++ R+ VL Sbjct: 25 DVRKVARTLYWQGWRIASIARHLDIKPA-TVASWCRREKWKDATPVERIEASLEVRLMVL 83 Query: 66 LHREKKTPGEQEELDRLIGHHVSLKEKALKWAE--REQALKAQRAEGSEPGPSRGKREHN 123 + +EKK + +E+D L+G V + K+ E +E L + A GP R Sbjct: 84 IAKEKKDGADYKEID-LLGRQVERLARVRKYDETGKESDLNPKIA-SRNAGPKR------ 135 Query: 124 SQGGGGRKGGKKAKNEIGHLTADDFTE-WLGTLFGYQLRVREAKNDPALPRTRNILKSRQ 182 + +NEI E + +LF YQ +V D RTRNILKSRQ Sbjct: 136 ----------RAPRNEISDEQHKRIIEAFRDSLFDYQ-KVWYRNGDQ---RTRNILKSRQ 181 Query: 183 IGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVLSN 242 IG T+YFA EAL DA+ T NQIFLSA++AQA VF+ YI + A+ + LTG+PI+L + Sbjct: 182 IGATWYFAREALVDALDTDRNQIFLSASKAQAHVFKQYITQFARAAADIELTGDPIILPS 241 Query: 243 GAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSKV 302 GA L+F TN+ +AQS GN Y DEYFW+P F +L+ VAS MA WRKTYFSTPSS Sbjct: 242 GATLYFLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVT 301 Query: 303 HEAYRFWTGDRWKGQRPS--RVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGCHL 360 HEAY FW+G R + R+ ID E +R G +C D QWR ++T+ DA+ GC L Sbjct: 302 HEAYAFWSGAHANRGRAAGERIQIDTSHEALVR--GMLCEDAQWRQIVTVLDAMAGGCDL 359 Query: 361 IDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTRWE----DYKPGRPDP 416 DI+EL+ EY E F L MC+FIDD+LSVFK D++R VD WE D+ P P Sbjct: 360 FDIDELRREYSAEEFANLLMCQFIDDSLSVFKLSDLQRCMVDS--WEEWADDFSPLLLRP 417 Query: 417 FGRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKK 476 FG REVW+GYDP+ T D+A LVVVAPP V FRVLE+H +RG +F+ QA IE I ++ Sbjct: 418 FGYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQR 477 Query: 477 FRVTYLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSS 536 + V Y+ +D +G+G GVY L++ F +NYS E K+RLVLK VV R+++D+ Sbjct: 478 YNVGYIAIDTTGMGQGVYQLVRKFFPAAV-ALNYSPEVKTRLVLKGQSVVRNGRLQFDAG 536 Query: 537 DRDIPLAFLAIKRSTTGGG-QMTFRAARDNVTGHADVFFAIAHAVANEPL 585 D+ AF+AIK++ T G Q T+ A R + TGHAD+ +A HA+ EPL Sbjct: 537 WTDLAAAFMAIKQTMTASGRQATYTAGRTDETGHADLAWACLHAIDREPL 586 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 436 bits (1120), Expect = e-124, Method: Compositional matrix adjust. Identities = 256/590 (43%), Positives = 347/590 (58%), Gaps = 38/590 (6%) Query: 6 EIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRVQVL 65 ++R A+ LY + W I L + + W + W+D E +E ++ R+ VL Sbjct: 25 DVRKVARTLYWQGWRIASIARHLDIKPA-TVASWCRREKWKDATPVERIEASLEVRMMVL 83 Query: 66 LHREKKTPGEQEELDRLIGHHVSLKEKALKWAE--REQALKAQRAEGSEPGPSRGKREHN 123 + +EKK + +E+D L+G V + K+ E +E L + A GP R Sbjct: 84 IAKEKKDGADYKEID-LLGRQVERLARVRKYDETGKESDLNPKIA-SRNAGPKR------ 135 Query: 124 SQGGGGRKGGKKAKNEIGHLTADDFTE-WLGTLFGYQLRVREAKNDPALPRTRNILKSRQ 182 + +NEI E + +LF YQ +V D RTRNILKSRQ Sbjct: 136 ----------RAPRNEISDEQHKRIIEAFRDSLFDYQ-KVWYRNGDQ---RTRNILKSRQ 181 Query: 183 IGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVLSN 242 IG T+YFA EAL DA+ T NQIFLSA++AQA VF+ YI + A+ + LTG+PI+L + Sbjct: 182 IGATWYFAREALVDALDTDRNQIFLSASKAQAHVFKQYITQFARGAADIELTGDPIILPS 241 Query: 243 GAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSKV 302 GA L+F TN+ +AQS GN Y DEYFW+P F +L+ VAS MA WRKTYFSTPSS Sbjct: 242 GATLYFLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVT 301 Query: 303 HEAYRFWTGDRWKGQRPS--RVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGCHL 360 HEAY FW+G R + R+ ID E +R G +C D QWR ++T+ DA+ GC L Sbjct: 302 HEAYAFWSGAHANRGRAAGERIQIDTSHEALVR--GMLCEDAQWRQIVTVLDAMAGGCDL 359 Query: 361 IDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTRWE----DYKPGRPDP 416 DI+EL+ EY E F L MC+FIDD+LSVFK D++R VD WE D+ P P Sbjct: 360 FDIDELRREYSAEEFANLLMCQFIDDSLSVFKLSDLQRCMVDS--WEEWADDFSPLLLRP 417 Query: 417 FGRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKK 476 FG REVW+GYDP+ T D+A LVVVAPP V FRVLE+H +RG +F+ QA IE I ++ Sbjct: 418 FGYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQR 477 Query: 477 FRVTYLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSS 536 + V Y+ +D +G+G GVY L++ F +NYS E K+RLVLK VV R+++D+ Sbjct: 478 YNVGYIAIDTTGMGQGVYQLVRKFFPAAV-ALNYSPEVKTRLVLKGQSVVRNGRLQFDAG 536 Query: 537 DRDIPLAFLAIKRSTTGGG-QMTFRAARDNVTGHADVFFAIAHAVANEPL 585 D+ AF+AIK++ T G Q T+ A R + TGHAD+ +A HA+ EPL Sbjct: 537 WTDLAAAFMAIKQTMTASGRQATYTAGRTDETGHADLAWACLHAIDREPL 586 >gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111035;genbank:gi:134288784;genbank:Ge neID:4960696 Length = 589 Score = 435 bits (1119), Expect = e-124, Method: Compositional matrix adjust. Identities = 256/590 (43%), Positives = 346/590 (58%), Gaps = 38/590 (6%) Query: 6 EIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRVQVL 65 ++R A+ LY + W I L + + W + W+D E +E ++ R+ VL Sbjct: 13 DVRKVARTLYWQGWRIASIARHLDIKPA-TVASWCRREKWKDATPVERIEASLEVRMMVL 71 Query: 66 LHREKKTPGEQEELDRLIGHHVSLKEKALKWAE--REQALKAQRAEGSEPGPSRGKREHN 123 + +EKK + +E+D L+G V + K+ E +E L + A GP R Sbjct: 72 IAKEKKDGADYKEID-LLGRQVERLARVRKYDETGKESDLNPKIA-SRNAGPKR------ 123 Query: 124 SQGGGGRKGGKKAKNEIGHLTADDFTE-WLGTLFGYQLRVREAKNDPALPRTRNILKSRQ 182 + +NEI E + +LF YQ +V D RTRNILKSRQ Sbjct: 124 ----------RAPRNEISDEQHKRIIEAFRDSLFDYQ-KVWYRNGDQ---RTRNILKSRQ 169 Query: 183 IGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVLSN 242 IG T+YFA EAL DA+ T NQIFLSA++AQA VF+ YI + A+ V LTG+PI+L + Sbjct: 170 IGATWYFAREALVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIILPS 229 Query: 243 GAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSKV 302 GA L+F TN+ +AQS GN Y DEYFW+P F +L+ VAS MA WRKTYFSTPSS Sbjct: 230 GATLYFLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVT 289 Query: 303 HEAYRFWTGDRWKGQRPS--RVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGCHL 360 HEA+ FW+G R + R+ ID E +R G +C D QWR ++T+ DA+ GC+L Sbjct: 290 HEAFAFWSGAHANRGRAAGERIQIDTSHEALVR--GMLCEDAQWRQIVTVLDAMAGGCNL 347 Query: 361 IDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTRWE----DYKPGRPDP 416 DI+EL+ EY E F L MC FIDD+LSVFK D++R VD WE D+ P P Sbjct: 348 FDIDELRREYSAEEFANLLMCHFIDDSLSVFKLSDLQRCMVDS--WEEWADDFSPLLLRP 405 Query: 417 FGRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKK 476 FG REVW+GYDP+ T D+A LVVVAPP V FRVLE+H +RG +F+ QA IE I ++ Sbjct: 406 FGHREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQR 465 Query: 477 FRVTYLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSS 536 + V Y+ +D +G+G GVY L++ F +NYS E K+RLVLK VV R+++D+ Sbjct: 466 YNVGYIAIDTTGMGQGVYQLVRKFFPAAV-ALNYSPEVKTRLVLKGQSVVRNGRLQFDAG 524 Query: 537 DRDIPLAFLAIKRSTTGGG-QMTFRAARDNVTGHADVFFAIAHAVANEPL 585 D+ AF+AIK++ T G Q T+ A R TGHAD+ +A HA+ EPL Sbjct: 525 WTDLAAAFMAIKQTMTASGRQATYTAGRTEETGHADLAWACLHAIDREPL 574 >gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839851;genbank:gi:30065706;genbank:GeneID :1260600 Length = 590 Score = 424 bits (1090), Expect = e-120, Method: Compositional matrix adjust. Identities = 244/589 (41%), Positives = 353/589 (59%), Gaps = 39/589 (6%) Query: 8 RNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRVQVLLH 67 R A LY + ++ +I L + + W ++ GW + VE ++ R+ L+ Sbjct: 14 RRQAALLYWQGFSVPQIAAMLQMKRP-TVQSWKQRDGWDSVAPISRVEMSLEARLTQLII 72 Query: 68 REKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRGKREHNSQGG 127 + +KT G+ +E+D L+G + + +++ Q ++ P+ R Sbjct: 73 KPQKTGGDFKEID-LLGRQIERLARVNRYS--------QTGNEADLNPNVANRNK----- 118 Query: 128 GGRKGGKKAKNEIGHLTADDFTEWLGTLF-----GYQLRVREAKNDPALPRTRNILKSRQ 182 GGR+ KK + +D+ E L +F YQL A + R R+ILKSRQ Sbjct: 119 GGRRKPKK------NFFSDEAIEKLEQIFFEQSFEYQLHWYRAGLEH---RIRDILKSRQ 169 Query: 183 IGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVL-S 241 IG T+YF+ EAL A+ TG NQIFLSA++ QA VFR YI A+ + V LTG+PIVL + Sbjct: 170 IGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIAFAR-LVDVDLTGDPIVLGN 228 Query: 242 NGAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSK 301 NGA+L F TNSN+AQS +G++Y+DE FWIPNF+ L VAS MA+QSH R TYFSTPS+ Sbjct: 229 NGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRSTYFSTPSTL 288 Query: 302 VHEAYRFWTGDRWKGQRPS---RVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGC 358 H+AY FW+G+ + R S RV ID + GG +C D QWR ++TIEDA++ GC Sbjct: 289 AHDAYPFWSGELFNRGRASAAERVEIDV--SHNALAGGLLCADGQWRQIVTIEDALKGGC 346 Query: 359 HLIDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTR-WEDYKPGRPDPF 417 L DIE+LK E + F L+MC F+DD SVF F++++R VD WEDY P +PF Sbjct: 347 TLFDIEQLKRENSADDFKNLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYAPFAANPF 406 Query: 418 GRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKF 477 G R VW+GYDPS D+A VV+APP VAG +FR+LE+H W+G++F QA+ I ++ +K+ Sbjct: 407 GSRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKY 466 Query: 478 RVTYLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSD 537 V Y+G+D +G+G GV+ L++ F I Y+ E K+ +VLK DV+ +E+D S Sbjct: 467 NVEYIGIDATGLGVGVFQLVRS-FYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSA 525 Query: 538 RDIPLAFLAIKRSTTGGGQ-MTFRAARDNVTGHADVFFAIAHAVANEPL 585 DI +F+AI+++ T G+ T+ A+R HAD+ +A HA+ NEPL Sbjct: 526 TDITSSFMAIRKTMTSSGRSATYEASRSEEASHADLAWATMHALLNEPL 574 >gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878200;genbank:gi:33438899;genbank:GeneID :1457734 Length = 590 Score = 424 bits (1090), Expect = e-120, Method: Compositional matrix adjust. Identities = 244/589 (41%), Positives = 353/589 (59%), Gaps = 39/589 (6%) Query: 8 RNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRVQVLLH 67 R A LY + ++ +I L + + W ++ GW + VE ++ R+ L+ Sbjct: 14 RRQAALLYWQGFSVPQIAAMLQMKRP-TVQSWKQRDGWDSVAPISRVEMSLEARLTQLII 72 Query: 68 REKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRGKREHNSQGG 127 + +KT G+ +E+D L+G + + +++ Q ++ P+ R Sbjct: 73 KPQKTGGDFKEID-LLGRQIERLARVNRYS--------QTGNEADLNPNVANRNK----- 118 Query: 128 GGRKGGKKAKNEIGHLTADDFTEWLGTLF-----GYQLRVREAKNDPALPRTRNILKSRQ 182 GGR+ KK + +D+ E L +F YQL A + R R+ILKSRQ Sbjct: 119 GGRRKPKK------NFFSDEAIEKLEQIFFEQSFEYQLHWYRAGLEH---RIRDILKSRQ 169 Query: 183 IGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVL-S 241 IG T+YF+ EAL A+ TG NQIFLSA++ QA VFR YI A+ + V LTG+PIVL + Sbjct: 170 IGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIAFAR-LVDVDLTGDPIVLGN 228 Query: 242 NGAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSK 301 NGA+L F TNSN+AQS +G++Y+DE FWIPNF+ L VAS MA+QSH R TYFSTPS+ Sbjct: 229 NGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRSTYFSTPSTL 288 Query: 302 VHEAYRFWTGDRWKGQRPS---RVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGC 358 H+AY FW+G+ + R S RV ID + GG +C D QWR ++TIEDA++ GC Sbjct: 289 AHDAYPFWSGELFNRGRASAAERVEIDV--SHNALAGGLLCADGQWRQIVTIEDALKGGC 346 Query: 359 HLIDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTR-WEDYKPGRPDPF 417 L DIE+LK E + F L+MC F+DD SVF F++++R VD WEDY P +PF Sbjct: 347 TLFDIEQLKRENSADDFKNLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYAPFAANPF 406 Query: 418 GRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKF 477 G R VW+GYDPS D+A VV+APP VAG +FR+LE+H W+G++F QA+ I ++ +K+ Sbjct: 407 GSRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKY 466 Query: 478 RVTYLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSD 537 V Y+G+D +G+G GV+ L++ F I Y+ E K+ +VLK DV+ +E+D S Sbjct: 467 NVEYIGIDATGLGVGVFQLVRS-FYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSA 525 Query: 538 RDIPLAFLAIKRSTTGGGQ-MTFRAARDNVTGHADVFFAIAHAVANEPL 585 DI +F+AI+++ T G+ T+ A+R HAD+ +A HA+ NEPL Sbjct: 526 TDITSSFMAIRKTMTSSGRSATYEASRSEEASHADLAWATMHALLNEPL 574 >gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046758;genbank:gi:9630329;genbank:GeneID: 1261531 Length = 590 Score = 424 bits (1090), Expect = e-120, Method: Compositional matrix adjust. Identities = 244/589 (41%), Positives = 353/589 (59%), Gaps = 39/589 (6%) Query: 8 RNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRVQVLLH 67 R A LY + ++ +I L + + W ++ GW + VE ++ R+ L+ Sbjct: 14 RRQAALLYWQGFSVPQIAAMLQMKRP-TVQSWKQRDGWDSVAPISRVEMSLEARLTQLII 72 Query: 68 REKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRGKREHNSQGG 127 + +KT G+ +E+D L+G + + +++ Q ++ P+ R Sbjct: 73 KPQKTGGDFKEID-LLGRQIERLARVNRYS--------QTGNEADLNPNVANRNK----- 118 Query: 128 GGRKGGKKAKNEIGHLTADDFTEWLGTLF-----GYQLRVREAKNDPALPRTRNILKSRQ 182 GGR+ KK + +D+ E L +F YQL A + R R+ILKSRQ Sbjct: 119 GGRRKPKK------NFFSDEAIEKLEQIFFEQSFDYQLHWYRAGLEH---RIRDILKSRQ 169 Query: 183 IGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVL-S 241 IG T+YF+ EAL A+ TG NQIFLSA++ QA VFR YI A+ + V LTG+PIVL + Sbjct: 170 IGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIAFAR-LVDVDLTGDPIVLGN 228 Query: 242 NGAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSK 301 NGA+L F TNSN+AQS +G++Y+DE FWIPNF+ L VAS MA+QSH R TYFSTPS+ Sbjct: 229 NGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRSTYFSTPSTL 288 Query: 302 VHEAYRFWTGDRWKGQRPS---RVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGC 358 H+AY FW+G+ + R S RV ID + GG +C D QWR ++TIEDA++ GC Sbjct: 289 AHDAYPFWSGELFNRGRASAAERVEIDV--SHNALAGGLLCADGQWRQIVTIEDALKGGC 346 Query: 359 HLIDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTR-WEDYKPGRPDPF 417 L DIE+LK E + F L+MC F+DD SVF F++++R VD WEDY P +PF Sbjct: 347 TLFDIEQLKRENSADDFKNLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYAPFAANPF 406 Query: 418 GRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKF 477 G R VW+GYDPS D+A VV+APP VAG +FR+LE+H W+G++F QA+ I ++ +K+ Sbjct: 407 GSRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKY 466 Query: 478 RVTYLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSD 537 V Y+G+D +G+G GV+ L++ F I Y+ E K+ +VLK DV+ +E+D S Sbjct: 467 NVEYIGIDATGLGVGVFQLVRS-FYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSA 525 Query: 538 RDIPLAFLAIKRSTTGGGQ-MTFRAARDNVTGHADVFFAIAHAVANEPL 585 DI +F+AI+++ T G+ T+ A+R HAD+ +A HA+ NEPL Sbjct: 526 TDITSSFMAIRKTMTSSGRSATYEASRSEEASHADLAWATMHALLNEPL 574 >gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165255;genbank:gi:145708080;genbank:Ge neID:5247139 Length = 593 Score = 421 bits (1083), Expect = e-119, Method: Compositional matrix adjust. Identities = 244/589 (41%), Positives = 355/589 (60%), Gaps = 37/589 (6%) Query: 8 RNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRVQVLLH 67 R A LY + + I + LG+ ++ W + GW E V ++I R+ L+ Sbjct: 19 RRIAGTLYWQGYWVARIAEMLGVKPV-TVHSWKRRDGWDAADAVERVANSIEERMAQLVA 77 Query: 68 REKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRGKREHNSQGG 127 +E K + +E+D L+G + E+ + +R E S G + Sbjct: 78 KEVKEGRDYKEID-LLGRQM------------ERMARVRRYEAS------GNETDLNPKV 118 Query: 128 GGRKGGKKAKNEIGHLTADDFTEWL----GTLFGYQLRVREAKNDPALPRTRNILKSRQI 183 R G ++K E ++ ++ T+ L ++F YQ EA + R RN+LKSRQI Sbjct: 119 ANRNKGPRSKPERNAISPEEQTQLLEAFRDSMFDYQRVWYEAGQ---VERIRNLLKSRQI 175 Query: 184 GMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVLSNG 243 G T+YFA EA DA+ TG NQIFLSA++AQA VF+ YI + A+ G+ L G+P+VL NG Sbjct: 176 GATWYFAREAFIDALTTGRNQIFLSASKAQAHVFKQYIIQFAKDAAGIELKGDPMVLPNG 235 Query: 244 AELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSKVH 303 A L+F TN+ +AQS GN+Y DEYFW+P F++L VAS MA HWR+TYFSTPSS H Sbjct: 236 ATLYFLGTNARTAQSYHGNLYFDEYFWVPRFQELRKVASGMAIHKHWRQTYFSTPSSLSH 295 Query: 304 EAYRFWTG---DRWKGQRPSRVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGCHL 360 EAY FW+G +R K + ++ +D LRDG R C D QWR ++T+EDA+R GC+L Sbjct: 296 EAYPFWSGALFNRGKA-KDKQIKLDL-SHAALRDGMR-CADGQWRQIVTVEDALRGGCNL 352 Query: 361 IDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTR-WEDYKPGRPDPFGR 419 D+++L+ EY E F L MC FIDD SVF + R VD WED++P P PFG Sbjct: 353 FDLDQLRLEYSELDFANLLMCVFIDDNASVFPLAMLMRGMVDSWEVWEDFRPFAPRPFGN 412 Query: 420 REVWMGYDPS-RTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFR 478 R VW+GYDP+ D+A LVVVAPP V G +FRVLE+H +RG++++ QA I R+A+++ Sbjct: 413 RPVWVGYDPNGGGGDSAALVVVAPPLVPGGKFRVLERHQFRGIDYEEQAGAIRRVAERYD 472 Query: 479 VTYLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSDR 538 V Y+G+D +GIG V+ L++ F+ YS++ K+ LVLK DV+ R+E+D+ Sbjct: 473 VAYVGIDRTGIGDAVFRLVQK-FRPDAEGFTYSVDVKTALVLKAHDVISKGRLEFDAGWT 531 Query: 539 DIPLAFLAIKRSTT-GGGQMTFRAARDNVTGHADVFFAIAHAVANEPLD 586 D +F++IK++TT GG++T++A R T HAD+ +A HA+++EPL+ Sbjct: 532 DFAASFMSIKKTTTAAGGRVTYQAGRSEDTSHADLAWACMHALSHEPLE 580 >gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3 # Family: family:all:169 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958058;genbank:gi:41057355;genbank:GeneID :2744226 Length = 589 Score = 410 bits (1053), Expect = e-116, Method: Compositional matrix adjust. Identities = 234/587 (39%), Positives = 349/587 (59%), Gaps = 35/587 (5%) Query: 8 RNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRVQVLLH 67 R A LY + ++ +I + L + + W ++ GW + VE ++ R+ L+ Sbjct: 14 RRQASLLYWQGFSVPQIAEMLQVKRP-TVQSWKQRDGWDGIAPISRVESSLEARLIQLIA 72 Query: 68 REKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRGKREHNSQGG 127 + +K+ G+ +E+D L+G + + +++ Q ++ P+ R Sbjct: 73 KPQKSGGDFKEID-LLGRQIERLARVNRYS--------QTGNEADLNPNVANRNK----- 118 Query: 128 GGRKGGKK---AKNEIGHLTADDFTEWLGTLFGYQLRVREAKNDPALPRTRNILKSRQIG 184 G RK KK + + L F + F YQL+ A R R+ILKSRQIG Sbjct: 119 GERKRPKKNFFSDEAVAKLEEIFFDQ----SFEYQLQWYRAG---LAHRIRDILKSRQIG 171 Query: 185 MTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVL-SNG 243 T+YF+ EAL A+ TG NQIFLSA++ QA VFR YI + A+ + V LTG+PIV+ +NG Sbjct: 172 ATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIQFAR-LVDVDLTGDPIVIGNNG 230 Query: 244 AELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSKVH 303 A+L F TNSN+AQS +G++Y+DE FWIPNF+KL VAS MA+Q H R TYFSTPS+ H Sbjct: 231 AKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAH 290 Query: 304 EAYRFWTGDRWKGQRPS---RVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGCHL 360 AY FW+G+ + R S R+ ID GG +C D QWR ++TIEDA+ GC L Sbjct: 291 GAYPFWSGELFNKGRASAADRIEIDI--SHSALAGGLLCADGQWRQIVTIEDALAGGCTL 348 Query: 361 IDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTR-WEDYKPGRPDPFGR 419 D+++L+ E +E F L+MC F+DD SVF F++++R VD WED+ P PFG Sbjct: 349 FDLDQLRRENSDEDFKNLFMCEFVDDKASVFPFEELQRCMVDVMETWEDFAPFADHPFGS 408 Query: 420 REVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRV 479 R VW+GYDPS T D+A VV+APP V+G +FR+LE+H W+G++F QA+ I R+ +K+ V Sbjct: 409 RPVWIGYDPSHTGDSAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRRLTEKYNV 468 Query: 480 TYLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSDRD 539 Y+G+D +G+G GV+ L++ F I Y+ E K+ +VLK D + +E+D+ D Sbjct: 469 EYIGIDATGLGLGVFQLVRS-FYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATD 527 Query: 540 IPLAFLAIKRSTTGGGQ-MTFRAARDNVTGHADVFFAIAHAVANEPL 585 + +F++I+++ T G+ T+ A+R HAD+ +A HA+ NEPL Sbjct: 528 VTQSFMSIRKTMTSSGRSATYEASRTEEASHADIAWATMHALLNEPL 574 >gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655470;genbank:gi:109289938;genbank:GeneI D:4157372 Length = 605 Score = 380 bits (976), Expect = e-107, Method: Compositional matrix adjust. Identities = 235/596 (39%), Positives = 330/596 (55%), Gaps = 36/596 (6%) Query: 2 AYPEEIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRR 61 A P + A+ Y +T EI +L + I W ++ W ++ VE + R Sbjct: 20 ANPLHDKREAQSKYWAGYTVTEISRQLNI-PVSTIASWKKREKWDEISPVGRVEATLESR 78 Query: 62 VQVLLHREKKTPGEQEELD---RLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRG 118 + +L+ +E K + +E+D RL+ +K K G+E + Sbjct: 79 LNLLIMKESKNNNDYKEMDALRRLLESTARIK-------------KYSNGGGNEADLNPN 125 Query: 119 KREHNSQGGGGRKGGKKAKNEIGHLTADDFTE-WLGTLFGYQLRVREAKNDPALPRTRNI 177 + N G RK K +N I A+ +L +F YQ + EA R RNI Sbjct: 126 IKNRNK---GDRK--KPEQNAISEEQAELLINGFLDGMFHYQKKWHEA---GLTHRIRNI 177 Query: 178 LKSRQIGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNP 237 LKSRQIG TYYFA EAL DA++TG NQIF+SA++ QA FR+YI A+ V L G Sbjct: 178 LKSRQIGATYYFAHEALVDALVTGRNQIFISASKKQALQFRAYIVAYAKRVADVELKGET 237 Query: 238 IVLSNGAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFST 297 I L N ++L F TNS +AQS GN+Y DE FW+ FE++ VA+ MA+Q +R TYFST Sbjct: 238 ITLPNESQLIFLGTNSKTAQSYHGNLYFDEIFWVNRFEEIRKVAAGMASQKQYRITYFST 297 Query: 298 PSSKVHEAYRFWTGDRWKGQRP--SRVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIR 355 PSS H AY W+G + +RP +V ID +L++G + C D QWR ++ I DA Sbjct: 298 PSSITHSAYLLWSGKLFNRKRPKAEQVEIDI-SHANLKNGKK-CGDGQWRQIVNIYDAEA 355 Query: 356 LGCHLIDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTR-WEDY--KPG 412 GC+L DIE+LK E + F++L+MC FIDD SVFKF M+R VD W DY G Sbjct: 356 GGCNLFDIEQLKLENSPDEFEQLFMCEFIDDNQSVFKFTMMQRCLVDSMEVWRDYVFTDG 415 Query: 413 RPDPFGRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIER 472 PFG +EVW+GYDPS T D + LVV+APP V G +FR+LE ++G +F QA EI Sbjct: 416 YQRPFGNKEVWVGYDPSYTGDRSALVVIAPPKVDGGKFRLLEYRTFKGADFAEQAAEIVA 475 Query: 473 IAKKFRVTYLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIE 532 I K+ VT L +D +G+G GVY+++K + Y++E KS++VLK +D++ R E Sbjct: 476 ICAKYNVTRLAIDTTGLGVGVYEIVKKERPDAV-ALTYNVELKSKMVLKGLDIISKGRFE 534 Query: 533 WDSSDR-DIPLAFLAIKRSTTGGG-QMTFRAARDNVTGHADVFFAIAHAVANEPLD 586 +DS ++ +F+AIK+ T G Q+T+ A R HAD+ +A NEP D Sbjct: 535 FDSMHAVEVGASFMAIKKQITNSGRQVTYVADRSEEASHADLAWACLQVFINEPFD 590 >gi|13742|lcl|protein:vir:1826 Length: 248 # NCBI annotation: W protein # Family: family:all:169 # MgeID: mge:324 # MgeName: 186 # Cross-refs: genbank:acc:NP_052250;genbank:gi:9634057;genbank:GeneID: 1262463 Length = 248 Score = 110 bits (275), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 123/232 (53%), Gaps = 25/232 (10%) Query: 156 FGYQ---LRVREAKNDPALPRTRNILKSRQIGMTYYFAGEALEDAILTGGNQIFLSATRA 212 F YQ LRV + D R+I KSRQIG T F+ EAL DA+ TG N ++ + T Sbjct: 23 FDYQATWLRVGKLNID------RSITKSRQIGATQLFSREALLDALTTGDNHVWFAHTIE 76 Query: 213 QAEVFRSYICKIAQTFLGVTLT--GNPIVLSNGAELHFCSTNSNSAQSRSGNVYIDEYFW 270 A V Y+ ++ +GV+LT G+ + L +GA + F S+ A + +GNVY+DE+ W Sbjct: 77 HARVALMYMSNLSAR-VGVSLTSNGHSLQLDDGAVISFVGEESHCA-ALAGNVYLDEFGW 134 Query: 271 IPNFEKLSDVASAMATQSHWRKTYFSTPSSKVHEAYRFWTGDRWKGQRPSRVAIDFPGED 330 N + + VA+ +A T F++PS ++A+R W G + RPS + Sbjct: 135 FNNPLRAAKVAAGIACHKRHSLTMFTSPSDN-YDAFRVWNGTT-RRHRPSPL-------- 184 Query: 331 DLRDGGRI-CPDRQWRYVITIEDAIRLGCHLIDIEELKDEYPEEVFDRLYMC 381 + G + C D WR +T++ A + GC+L +E+K EY ++ + L+ C Sbjct: 185 -INTGDSVFCTDGVWRQSVTLDAACQRGCNLFAPDEIKHEYSDDDYRLLFGC 235 >gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: large terminase subunit # Family: family:all:460 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164067;genbank:gi:56692599;genbank:GeneID :3192575 Length = 486 Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 101/449 (22%), Positives = 175/449 (38%), Gaps = 74/449 (16%) Query: 167 NDPALPRTRNILKSRQIGMTY---YFAGE--ALEDAILTG--------GNQIFLSATRAQ 213 DP+ R + + KSRQIG+++ Y AGE A E A + ++FL + Sbjct: 27 TDPS--RLKLMQKSRQIGLSWSTAYAAGERTAAESARVDQWVSSRDDLQARLFLEDCKMW 84 Query: 214 AEVFRSYICKIAQTFLGVTLTGNPIVL--SNGAELHFCSTNSNSAQSRSGNVYIDEYFWI 271 A + + + + V + VL +NG +H S+N ++ + G +DE+ Sbjct: 85 AGIMNQAAKDLGEIVIDVKNKISAYVLEFANGRRIHSMSSNPDAQAGKRGGRILDEFALH 144 Query: 272 PNFEKLSDVA-------SAMATQSHWR--KTYFSTPSSKVHEAYRFWTGDRWKGQRPSRV 322 P+ KL +A AM S R + +F+ ++ E G P + Sbjct: 145 PDPRKLWSIAYPGITWGGAMEIISTHRGSQNFFNQLVREIVE-----------GGNPKNI 193 Query: 323 AIDFPGEDDLRDGGRICPDRQWRYV---------ITIEDAIRLGCHLIDIEELKDEYPEE 373 ++ D + G + +Q D IR GC EE Sbjct: 194 SLHTVTLQDALNQGFLFKLQQMLPADDEIQGMDEAQYFDFIRAGCA-----------DEE 242 Query: 374 VFDRLYMCRFIDDALSVFKFQDMERAGVDPT-RWEDYKPGRPDPFGRREVWMGYDPSRTR 432 F + YMC DD ++ ++ + A T W+ + GR ++ G D R + Sbjct: 243 SFQQEYMCNPADDDVAFLEYDLIASAEYPQTANWQQPEGGR--------LFAGVDIGRKK 294 Query: 433 DNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRVTYLGVDVSGIGAG 492 D L ++ + G+ + +H R N + AQE R + +D +G+G G Sbjct: 295 DLTVLWIL---ELLGD--VLYTRHVERLQNMRKSAQEAILWPWFQRCERICIDATGLGIG 349 Query: 493 VYDLLKPVF-KGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSDRDIPLAFLAIKRST 551 D + F + + ++ K L + +E +++ D I A + + T Sbjct: 350 WADDAQDQFGEHRVEAVTFTPRVKEALAYPIRGAMEDHKVRI-PYDPKIRAALREVTKQT 408 Query: 552 TGGGQMTFRAARDNVTGHADVFFAIAHAV 580 T G + F A R GHAD F+A+ A+ Sbjct: 409 TAAGNIRFTAER-TADGHADEFWALGLAI 436 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 16/120 (13%) Query: 420 REVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRV 479 R+V++G+D S+T DN + + P T + +++H + QA+ IE +K+ + Sbjct: 395 RDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPF---AQAKTIEAKSKQDGL 451 Query: 480 TYLG------VDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEW 533 YL VD++ + +GV + + V++ + +N + RL +K I + + N EW Sbjct: 452 DYLKLQDEGFVDITNLASGVIN-TEQVYQWLVDYVN-----QHRLKVKFI-IADPNHGEW 504 >gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unknown # Family: family:all:4926 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046608;genbank:gi:9630181;genbank:GeneID: 1261423 Length = 589 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 85/384 (22%), Positives = 139/384 (36%), Gaps = 91/384 (23%) Query: 178 LKSRQIGMTYYFAGEALEDAILTGGNQIFL-SATRAQAEVFRSYICKIAQTF-------- 228 L SR G T+ + AIL G +I + S T+ QA R I KI Sbjct: 83 LASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQA---REVIEKIDDLRKESPNLRR 139 Query: 229 ----LGVTLTGNPIVLSNGAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAM 284 L + + NG+ + ++N + A+S+ N+ I + F + +FE +S V Sbjct: 140 EIEDLKTSTNDAKVEFHNGSWIKIVASN-DGARSKRANLLIVDEFRMVDFEIISKVLRKF 198 Query: 285 AT----------------QSHWRKTYFSTPSSKVHEAY-RFWTGDRWKGQRPSRVAIDFP 327 T + ++ Y S+ KVH ++ RF T + P Sbjct: 199 LTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSFNRFITYYNAMMKGSKYFVCGLP 258 Query: 328 GEDDLRDGGRICPDRQWRYVITIEDAIRLGCHLIDIEELKDEYPEEVFD------RLYMC 381 + +++G L+D ++++DE EE FD + Sbjct: 259 YQIAIKEG------------------------LLDKDQVRDEMAEEDFDPIGWSMEMEAL 294 Query: 382 RFIDDALSVFKFQDME--RAGVDPTRWEDYKPGRPDPFGRREVWMGYDPSRTR------- 432 F + + FKF+D+E R P DY D + E G P R Sbjct: 295 WFGESEKAYFKFEDIEKNRKLASPLFPPDYYSLIKDSNFKYE---GKKPGEIRLVSNDIA 351 Query: 433 ------DNATLVVV--APPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRVTYLGV 484 ++A++ V P G ++ G + QA I +I + + Y+ + Sbjct: 352 GMAGKDNDASVYTVFRLIPNSNGYDRHIVYMESIVGGHTGTQATRIRQIYEDYDCDYIVL 411 Query: 485 DVSGIGAGVYDLLKPVFKGVCHPI 508 D IG GVYD L C P+ Sbjct: 412 DTQSIGLGVYDAL-------CQPL 428 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 16/120 (13%) Query: 420 REVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRV 479 R+V++G+D S+T DN + + P T + +++H + QA+ IE +K+ + Sbjct: 396 RDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPF---AQAKTIEAKSKQDGL 452 Query: 480 TYLG------VDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEW 533 YL VD++ + +GV + V++ + +N + RL +K I + + N EW Sbjct: 453 DYLKLQDEGFVDITNLASGVIN-TDQVYQWLVDYVN-----QHRLKVKFI-IADPNHGEW 505 >gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: terminase large subunit gp17 # Family: family:all:147 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195134;genbank:gi:58532911;uniprot:Q5GQN8 ;genbank:GeneID:3260486 Length = 548 Score = 33.1 bits (74), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Query: 238 IVLSNGAELHFCSTNSNSAQSRSGNV-YIDEYFWIPNFEKLSDVASAMATQSHWRKT--- 293 I L NG+++ ST++++ + S N+ ++DE+ ++PN S AS T + + T Sbjct: 146 IELENGSKILAASTSASAVRGMSFNIIFLDEFAFVPNHIADSFFASVYPTITSGKSTKVI 205 Query: 294 YFSTPSSKVHEAYRFWT 310 STP H Y+ W Sbjct: 206 IISTPQGMNH-FYKMWV 221 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 33.1 bits (74), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 20/110 (18%) Query: 394 QDMERAGVDPTRWEDYKPGRPDPFGRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVL 453 Q E + +D WE + +PD + RR VW+G D R D + V ++ Sbjct: 345 QSSEESYIDKQSWELAQIDKPDTYKRR-VWLGVDVGRVSDLFAISSV-----------IM 392 Query: 454 EKHYWRGLNFQYQAQEIERIAKKFR--VTYLGV------DVSGIGAGVYD 495 YW +F + A + AK+ R V+Y + +++ + +GV D Sbjct: 393 MDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVID 442 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 32.3 bits (72), Expect = 0.014, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 4/44 (9%) Query: 415 DPFGRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYW 458 D FGR +V++G+D S+T D+ +L V P + G +F L +H W Sbjct: 369 DYFGR-DVFIGFDYSQTNDDTSLAFVFPHS--GSKFH-LYQHSW 408 >gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214662;genbank:gi:61806303;genbank:GeneID :3294591 Length = 550 Score = 32.0 bits (71), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Query: 240 LSNGAELHFCSTNSNSAQSRSGNV-YIDEYFWIPNFEKLSDVASAMATQSHWRKT---YF 295 L NG+++ ST++++ + S N+ ++DE+ ++PN AS T S + T Sbjct: 149 LENGSKILASSTSASAVRGMSFNIIFLDEFAFVPNHIAEQFFASVYPTISSGKSTKVIII 208 Query: 296 STPSSKVHEAYRFW 309 STP +++ Y+ W Sbjct: 209 STPHG-MNQFYKLW 221 >gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: Pas60 # Family: family:all:144 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024846;genbank:gi:48697461;genbank:GeneID :2846165 Length = 492 Score = 31.6 bits (70), Expect = 0.025, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 63/160 (39%), Gaps = 23/160 (14%) Query: 344 WRYVITIEDAI---RLGCHLIDIEELKDEYPEEVFDRLYMCRF-IDDALSVFKFQDMERA 399 W +T+E+AI R+ D + VF + F D SV +E A Sbjct: 220 WTRHVTLEEAIASGRISRAWADQRRSQWGSDSAVFHNRVLGEFHASDEDSVIPLAWLEAA 279 Query: 400 GVDPTRWEDY-KPGRPDPFGRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYW 458 RW ++ + GRP P G +W G D R D L V E R + Sbjct: 280 ---IERWHEWDRQGRPSPGG--PLWTGVDVGRGGDETVLAARDGWAVTLETNRRRDTMAT 334 Query: 459 RGLNFQYQAQEIERIAKKFRVTYLGVDVSGIGAGVYDLLK 498 GL QA+E I +DV G+GAGV+D L+ Sbjct: 335 VGL---IQAREGRAI----------IDVIGLGAGVFDRLR 361 >gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164303;genbank:gi:56692921;genbank:GeneID :3197204 Length = 543 Score = 31.2 bits (69), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 5/93 (5%) Query: 177 ILKSRQIGMTYYFAGEALEDAILTGGNQI-FLSATRAQAEVFRSYICKIAQTFLGVTLTG 235 ILK+RQ+G T A L+ A+ G + ++ R A+V K A L + Sbjct: 83 ILKARQLGFTTLIAIMWLDHALFNGDQRCGIIAQDRDAAKVIFRDKVKFAYDNLPEEIRE 142 Query: 236 N-PIVLSNGAELHFCSTNSN---SAQSRSGNVY 264 P +N EL F NS+ + RSG ++ Sbjct: 143 RFPTAAANADELLFAHNNSSVRVATSMRSGTIH 175 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 30.8 bits (68), Expect = 0.049, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 238 IVLSNGAELHFCSTNSNSAQSRS-GNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFS 296 I L NG + S++ ++ + S +YIDE +IPNF + + K + Sbjct: 216 ITLGNGCAIGAFSSSPDAVRGNSFALIYIDEVAFIPNFNDAWLAIQPVISSGRHSKILMT 275 Query: 297 TPSSKVHEAYRFWTG 311 T + ++ Y WT Sbjct: 276 TTPNGLNHWYDIWTA 290 >gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238880;genbank:gi:66391955;genbank:GeneID :3416630 Length = 613 Score = 29.6 bits (65), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 238 IVLSNGAELHFCSTNSNSAQSRS-GNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFS 296 I L NG + S++ ++ + S +Y+DE +IPNF + + K + Sbjct: 217 ITLGNGCAIGAFSSSPDAVRGNSFALIYVDEVAFIPNFTDAWMAIQPVISSGRRSKILMT 276 Query: 297 TPSSKVHEAYRFWTG 311 T + ++ Y WT Sbjct: 277 TTPNGLNHWYDIWTA 291 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 29.6 bits (65), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 238 IVLSNGAELHFCSTNSNSAQSRS-GNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFS 296 I L NG + S++ ++ + S +Y+DE +IPNF + + K + Sbjct: 217 ITLGNGCAIGAFSSSPDAVRGNSFALIYVDEVAFIPNFTDAWMAIQPVISSGRRSKILMT 276 Query: 297 TPSSKVHEAYRFWTG 311 T + ++ Y WT Sbjct: 277 TTPNGLNHWYDIWTA 291 >gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: terminase subunit nuclease and ATPase # Family: family:all:147 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803107;genbank:gi:116326387;genbank:GeneI D:4405484 Length = 610 Score = 29.3 bits (64), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 238 IVLSNGAELHFCSTNSNSAQSRS-GNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFS 296 I L NG+ + +++ ++ + S +YIDE +IPNF + + K + Sbjct: 226 IELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIIT 285 Query: 297 TPSSKVHEAYRFWTG 311 T + ++ Y WT Sbjct: 286 TTPNGLNHFYDIWTA 300 >gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049776;genbank:gi:9632591;genbank:GeneID: 1258647 Length = 610 Score = 29.3 bits (64), Expect = 0.15, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 238 IVLSNGAELHFCSTNSNSAQSRS-GNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFS 296 I L NG+ + +++ ++ + S +YIDE +IPNF + + K + Sbjct: 226 IELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIIT 285 Query: 297 TPSSKVHEAYRFWTG 311 T + ++ Y WT Sbjct: 286 TTPNGLNHFYDIWTA 300 >gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861869;genbank:gi:32453660;genbank:GeneID :1494295 Length = 611 Score = 28.1 bits (61), Expect = 0.31, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 238 IVLSNGAELHFCSTNSNSAQSRS-GNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFS 296 I L NG+ + +++ ++ + S +YIDE +IPNF + + K + Sbjct: 226 IQLDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNFIDSWLAIQPVISSGRRSKIIIT 285 Query: 297 TPSSKVHEAYRFWTG 311 T + ++ Y WT Sbjct: 286 TTPNGLNHFYDIWTA 300 >gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595293;genbank:gi:161622599;genbank:Ge neID:5783772 Length = 611 Score = 28.1 bits (61), Expect = 0.34, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 238 IVLSNGAELHFCSTNSNSAQSRS-GNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFS 296 I L NG+ + +++ ++ + S +YIDE +IPNF + + K + Sbjct: 226 IELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSKIIIT 285 Query: 297 TPSSKVHEAYRFWTG 311 T + ++ Y WT Sbjct: 286 TTPNGLNHFYDIWTA 300 >gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: similar to terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835653;genbank:gi:30044056 Length = 508 Score = 27.3 bits (59), Expect = 0.48, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 9/117 (7%) Query: 179 KSRQIGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQT----FLGV--- 231 K RQ+G+T+ AL I ++ ++A + K A FL + Sbjct: 61 KPRQMGVTWCAVAYALHQMIFNSNYKVLIAANKEATAKNVLERIKFAYEQLPRFLQIKKR 120 Query: 232 TLTGNPIVLSNGAELHFCSTNSNSAQSRSGNVYI-DEYFWIPNFEKL-SDVASAMAT 286 T I SN + S+ S+S +S S + I +E +I N E+L + V +AT Sbjct: 121 TWNKTYIEFSNYSSARAVSSKSDSGRSESITLLIVEEAAFISNMEELWASVQQTLAT 177 >gi|26943|lcl|protein:vir:5662 Length: 600 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899601;genbank:gi:34419588;genbank:GeneID :2546011 Length = 600 Score = 26.6 bits (57), Expect = 0.81, Method: Compositional matrix adjust. Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 238 IVLSNGAELHFCSTNSNSAQSRS-GNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFS 296 I NG +L ++ S++ + +S +Y+DE ++P F+ + + K + Sbjct: 212 ITFDNGCKLGAYASGSDAVRGKSFSMIYVDECAFVPGFDDFWKATFPVISSGEESKVVLT 271 Query: 297 TPSSKVHEAYRFWTG 311 + + ++ + W Sbjct: 272 STPNGLNHYHDMWNA 286 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Query: 420 REVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRV 479 EV++G+D S DN L V P +F + E+H + + FQ QA IE K+ + Sbjct: 386 HEVFIGFDYSMFSDNTALSFVYP--YDDGKFHI-EQHSF--IPFQ-QAGSIEAKEKQDGI 439 Query: 480 TY 481 TY Sbjct: 440 TY 441 >gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp17 terminase subunit, nuclease and ATPase # Family: family:all:147 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239195;genbank:gi:66391670;genbank:GeneID :3416364 Length = 609 Score = 24.3 bits (51), Expect = 4.8, Method: Compositional matrix adjust. Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 238 IVLSNGAELHFCSTNSNSAQSRS-GNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFS 296 I L N ++ +++ ++ + S +YIDE +IPNF + + K + Sbjct: 224 IELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILIT 283 Query: 297 TPSSKVHEAYRFWTG 311 T + ++ Y W Sbjct: 284 TTPNGLNHFYDIWNA 298 >gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050549;genbank:gi:9633446;genbank:GeneID: 1262208 Length = 568 Score = 23.5 bits (49), Expect = 8.2, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 195 EDAILTGGNQIFLSATRAQAEVFRS 219 ++A LT G ++F + + QAE F S Sbjct: 307 QEAFLTSGRRVFSAESTLQAESFCS 331 >gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859246;genbank:gi:32171173;genbank:GeneID :2653342 Length = 568 Score = 23.5 bits (49), Expect = 8.2, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 195 EDAILTGGNQIFLSATRAQAEVFRS 219 ++A LT G ++F + + QAE F S Sbjct: 307 QEAFLTSGRRVFSAESTLQAESFCS 331 >gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putative large subunit terminase # Family: family:all:147 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049511;genbank:gi:9632517;genbank:GeneID: 1262002 Length = 568 Score = 23.5 bits (49), Expect = 8.2, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 195 EDAILTGGNQIFLSATRAQAEVFRS 219 ++A LT G ++F + + QAE F S Sbjct: 307 QEAFLTSGRRVFSAESTLQAESFCS 331 >gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612880;genbank:gi:20065962;genbank:GeneID :935714 Length = 568 Score = 23.5 bits (49), Expect = 8.2, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 195 EDAILTGGNQIFLSATRAQAEVFRS 219 ++A LT G ++F + + QAE F S Sbjct: 307 QEAFLTSGRRVFSAESTLQAESFCS 331 >gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859079;genbank:gi:32171001;genbank:GeneID :2653280 Length = 568 Score = 23.5 bits (49), Expect = 8.2, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 195 EDAILTGGNQIFLSATRAQAEVFRS 219 ++A LT G ++F + + QAE F S Sbjct: 307 QEAFLTSGRRVFSAESTLQAESFCS 331 >gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: putative terminase large subunit # Family: family:all:147 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794060;genbank:gi:116222005;genbank:GeneI D:4397501 Length = 568 Score = 23.5 bits (49), Expect = 8.2, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 195 EDAILTGGNQIFLSATRAQAEVFRS 219 ++A LT G ++F + + QAE F S Sbjct: 307 QEAFLTSGRRVFSAESTLQAESFCS 331 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.136 0.417 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 287,760 Number of Sequences: 514 Number of extensions: 13827 Number of successful extensions: 147 Number of sequences better than 100.0: 44 Number of HSP's better than 100.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 55 length of query: 604 length of database: 206,069 effective HSP length: 77 effective length of query: 527 effective length of database: 166,491 effective search space: 87740757 effective search space used: 87740757 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)