Query lcl|Aclame:protein:vir:79043|NCBI_annot:putative portal protein|genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Match_columns 479 No_of_seqs 138 out of 588 Neff 10.2 Searched_HMMs 1612 Date Mon Dec 2 09:31:18 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_69 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_69_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:79043 Length: 479 100.0 1E-110 7E-114 623.2 52.1 479 1-479 1-479 (479) 2 protein:vir:5961 Length: 503 # 100.0 1.1E-98 7E-102 557.6 53.7 474 1-479 1-485 (503) 3 protein:vir:105461 Length: 470 100.0 3.9E-95 2.4E-98 538.2 51.9 458 19-479 1-470 (470) 4 protein:vir:102950 Length: 471 100.0 6E-95 3.7E-98 537.1 52.3 455 19-478 1-471 (471) 5 protein:vir:1236 Length: 483 # 100.0 1.5E-93 9.3E-97 529.5 49.9 456 1-479 1-477 (483) 6 protein:vir:97336 Length: 492 100.0 3.2E-93 2E-96 527.7 51.6 459 1-479 21-485 (492) 7 protein:vir:94805 Length: 492 100.0 3.9E-93 2.4E-96 527.2 51.3 459 1-479 21-485 (492) 8 protein:vir:96266 Length: 474 100.0 3.4E-93 2.1E-96 527.5 48.2 458 1-479 1-471 (474) 9 protein:vir:95899 Length: 474 100.0 3.4E-93 2.1E-96 527.5 48.2 458 1-479 1-471 (474) 10 protein:vir:97171 Length: 512 100.0 2.8E-92 1.8E-95 522.5 53.0 453 1-479 24-504 (512) 11 protein:vir:94498 Length: 474 100.0 2.4E-92 1.5E-95 522.9 52.0 456 1-479 1-467 (474) 12 protein:vir:97447 Length: 474 100.0 2.4E-92 1.5E-95 522.9 52.0 456 1-479 1-467 (474) 13 protein:vir:96839 Length: 474 100.0 3.1E-92 1.9E-95 522.3 50.6 461 1-479 1-473 (474) 14 protein:vir:9306 Length: 511 # 100.0 7.8E-92 4.9E-95 520.1 52.5 453 1-479 1-503 (511) 15 protein:vir:107112 Length: 478 100.0 7.2E-92 4.5E-95 520.3 51.7 461 1-479 1-477 (478) 16 protein:vir:103951 Length: 511 100.0 1.3E-91 8.1E-95 518.8 52.9 456 1-479 1-503 (511) 17 protein:vir:93747 Length: 472 100.0 5.5E-92 3.4E-95 520.9 50.2 456 1-479 5-465 (472) 18 protein:vir:99781 Length: 511 100.0 1.2E-91 7.6E-95 519.0 51.7 453 1-479 1-503 (511) 19 protein:vir:102330 Length: 451 100.0 7.4E-92 4.6E-95 520.2 50.5 432 19-477 1-451 (451) 20 protein:vir:95113 Length: 474 100.0 8.4E-92 5.2E-95 519.9 50.6 456 1-479 1-472 (474) 21 protein:vir:96240 Length: 511 100.0 2.8E-91 1.7E-94 517.1 52.8 453 1-479 1-503 (511) 22 protein:vir:96366 Length: 511 100.0 2.2E-91 1.4E-94 517.6 52.0 456 1-479 1-503 (511) 23 protein:vir:78805 Length: 511 100.0 2.2E-91 1.4E-94 517.6 52.0 456 1-479 1-503 (511) 24 protein:vir:78083 Length: 537 100.0 7.6E-92 4.7E-95 520.1 48.8 469 7-479 1-517 (537) 25 protein:vir:105292 Length: 478 100.0 4.1E-91 2.5E-94 516.1 52.6 461 1-479 1-474 (478) 26 protein:vir:3964 Length: 453 # 100.0 3.2E-91 2E-94 516.7 50.0 439 4-479 1-447 (453) 27 protein:vir:106571 Length: 499 100.0 1.5E-90 9.5E-94 513.0 52.2 450 2-479 1-479 (499) 28 protein:vir:3609 Length: 452 # 100.0 7.6E-91 4.7E-94 514.7 49.9 440 3-479 1-446 (452) 29 protein:vir:96179 Length: 468 100.0 1.3E-90 7.9E-94 513.4 50.8 458 1-479 1-468 (468) 30 protein:vir:9871 Length: 429 # 100.0 2.1E-90 1.3E-93 512.3 51.3 424 19-479 1-429 (429) 31 protein:vir:106639 Length: 481 100.0 4.6E-90 2.8E-93 510.4 52.8 452 2-479 1-479 (481) 32 protein:vir:2732 Length: 501 # 100.0 2.6E-90 1.6E-93 511.7 50.0 451 1-479 1-488 (501) 33 protein:vir:4898 Length: 502 # 100.0 4.7E-90 2.9E-93 510.3 49.3 450 1-479 1-497 (502) 34 protein:vir:94546 Length: 506 100.0 1.1E-89 7.1E-93 508.2 48.6 453 1-479 1-501 (506) 35 protein:vir:96494 Length: 501 100.0 3.6E-89 2.2E-92 505.5 49.0 450 1-479 1-496 (501) 36 protein:vir:733 Length: 453 # 100.0 2.7E-89 1.7E-92 506.1 47.4 439 2-479 1-453 (453) 37 protein:vir:95806 Length: 440 100.0 2E-88 1.2E-91 501.4 48.3 423 27-479 1-440 (440) 38 protein:vir:99522 Length: 470 100.0 7E-88 4.3E-91 498.4 50.2 448 1-478 1-470 (470) 39 protein:vir:9922 Length: 489 # 100.0 1.6E-87 9.8E-91 496.5 48.0 449 6-479 1-485 (489) 40 protein:vir:105889 Length: 474 100.0 1.4E-86 8.6E-90 491.3 48.7 449 7-479 1-473 (474) 41 protein:vir:94101 Length: 474 100.0 1.4E-86 8.6E-90 491.3 48.7 449 7-479 1-473 (474) 42 protein:vir:78537 Length: 480 100.0 2.2E-73 1.4E-76 418.9 45.9 433 18-479 1-463 (480) 43 protein:vir:78227 Length: 480 100.0 2.8E-73 1.7E-76 418.4 45.6 433 18-479 1-463 (480) 44 protein:vir:4223 Length: 486 # 100.0 9.2E-74 5.7E-77 421.0 42.4 438 2-479 1-472 (486) 45 protein:vir:2427 Length: 485 # 100.0 5.4E-73 3.3E-76 416.8 44.5 438 2-479 1-470 (485) 46 protein:vir:80680 Length: 441 100.0 8.6E-73 5.3E-76 415.7 44.1 423 16-479 1-441 (441) 47 protein:vir:104082 Length: 485 100.0 7.2E-73 4.5E-76 416.1 43.4 437 1-479 1-467 (485) 48 protein:vir:7768 Length: 484 # 100.0 5.6E-73 3.4E-76 416.7 42.0 436 9-479 1-469 (484) 49 protein:vir:2500 Length: 501 # 100.0 1.6E-72 1E-75 414.2 43.3 460 5-479 1-485 (501) 50 protein:vir:2341 Length: 488 # 100.0 7.5E-72 4.7E-75 410.5 43.9 433 1-479 1-477 (488) 51 protein:vir:105819 Length: 456 100.0 3.5E-71 2.2E-74 406.8 44.3 437 16-476 1-456 (456) 52 protein:vir:102602 Length: 456 100.0 3.5E-71 2.2E-74 406.8 44.3 437 16-476 1-456 (456) 53 protein:vir:99072 Length: 479 100.0 5.6E-71 3.5E-74 405.7 40.0 432 11-479 1-459 (479) 54 protein:vir:7987 Length: 456 # 100.0 8.7E-70 5.4E-73 399.2 44.3 438 16-475 1-456 (456) 55 protein:vir:99916 Length: 504 100.0 1.4E-66 8.6E-70 381.6 42.6 443 2-479 1-484 (504) 56 protein:vir:9568 Length: 410 # 100.0 2.7E-64 1.7E-67 369.1 38.6 391 32-463 1-410 (410) 57 protein:vir:38 Length: 496 # N 100.0 7.7E-63 4.8E-66 361.1 43.2 454 7-478 1-496 (496) 58 protein:vir:9751 Length: 422 # 100.0 2.8E-63 1.7E-66 363.5 38.4 400 7-461 1-422 (422) 59 protein:vir:98444 Length: 434 100.0 1E-62 6.3E-66 360.5 40.5 397 55-479 1-432 (434) 60 protein:vir:8184 Length: 474 # 100.0 2.6E-62 1.6E-65 358.3 40.5 437 5-478 1-474 (474) 61 protein:vir:94742 Length: 409 100.0 1.5E-62 9.6E-66 359.5 38.1 388 20-448 1-409 (409) 62 protein:vir:1634 Length: 409 # 100.0 2.8E-61 1.7E-64 352.5 38.5 390 20-448 1-409 (409) 63 protein:vir:80959 Length: 499 100.0 5E-60 3.1E-63 345.7 43.1 456 1-478 1-499 (499) 64 protein:vir:1587 Length: 508 # 100.0 2.7E-55 1.7E-58 319.8 44.5 461 2-477 1-508 (508) 65 protein:vir:79703 Length: 505 100.0 6.7E-55 4.2E-58 317.6 43.6 451 7-475 1-505 (505) 66 protein:vir:3028 Length: 500 # 100.0 6.9E-53 4.3E-56 306.5 43.5 457 2-477 1-500 (500) 67 protein:vir:9815 Length: 500 # 100.0 6.9E-53 4.3E-56 306.5 43.5 457 2-477 1-500 (500) 68 protein:vir:4782 Length: 522 # 100.0 3.5E-52 2.1E-55 302.7 42.8 464 2-479 1-521 (522) 69 protein:vir:98883 Length: 517 100.0 1.6E-47 9.9E-51 277.1 42.0 461 2-479 1-517 (517) 70 protein:vir:78907 Length: 518 100.0 1.8E-47 1.1E-50 276.9 41.8 455 2-475 1-518 (518) 71 protein:vir:101494 Length: 527 100.0 9.1E-46 5.7E-49 267.5 35.1 466 1-479 1-518 (527) 72 protein:vir:102239 Length: 527 100.0 1.8E-45 1.1E-48 265.9 35.4 466 1-479 1-518 (527) 73 protein:vir:7430 Length: 563 # 100.0 1.4E-39 9E-43 233.5 34.8 456 7-479 1-535 (563) 74 protein:vir:94956 Length: 452 100.0 1.5E-30 9.1E-34 184.2 33.2 425 2-479 1-452 (452) 75 protein:vir:97265 Length: 513 100.0 8.5E-29 5.3E-32 174.5 36.1 437 1-479 1-494 (513) 76 protein:vir:95149 Length: 501 99.9 9.3E-27 5.8E-30 163.3 36.8 443 1-479 1-498 (501) 77 protein:vir:80453 Length: 535 99.9 6E-25 3.7E-28 153.4 38.2 452 1-479 1-520 (535) 78 protein:vir:78393 Length: 489 99.9 6.6E-25 4.1E-28 153.1 34.1 437 1-479 1-484 (489) 79 protein:vir:95014 Length: 491 99.9 1.9E-24 1.2E-27 150.7 33.6 441 1-479 1-489 (491) 80 protein:vir:96783 Length: 488 99.9 1.7E-23 1.1E-26 145.4 33.4 433 1-465 1-488 (488) 81 protein:vir:93630 Length: 776 99.8 7.9E-20 4.9E-23 125.3 33.2 461 1-479 23-657 (776) 82 protein:vir:108295 Length: 711 99.8 8.1E-18 5.1E-21 114.3 33.5 465 1-479 1-657 (711) 83 protein:vir:10117 Length: 714 99.8 8.9E-17 5.5E-20 108.6 37.1 460 1-479 1-645 (714) 84 protein:vir:9950 Length: 714 # 99.8 8.9E-17 5.5E-20 108.6 37.1 460 1-479 1-645 (714) 85 protein:vir:3296 Length: 714 # 99.8 8.9E-17 5.5E-20 108.6 37.1 460 1-479 1-645 (714) 86 protein:vir:817 Length: 714 # 99.8 8.9E-17 5.5E-20 108.6 37.1 460 1-479 1-645 (714) 87 protein:vir:2764 Length: 714 # 99.8 8.9E-17 5.5E-20 108.6 37.1 460 1-479 1-645 (714) 88 protein:vir:8846 Length: 705 # 99.7 1.6E-15 1E-18 101.7 37.3 441 1-479 1-618 (705) 89 protein:vir:104437 Length: 714 99.7 2E-15 1.2E-18 101.2 35.6 457 1-479 1-641 (714) 90 protein:vir:105619 Length: 772 99.7 1.9E-16 1.2E-19 106.8 29.6 463 2-479 1-646 (772) 91 protein:vir:80040 Length: 461 99.7 1.9E-16 1.2E-19 106.8 27.4 413 1-476 1-461 (461) 92 protein:vir:80165 Length: 651 99.7 1.7E-14 1.1E-17 96.1 36.2 447 1-479 3-618 (651) 93 protein:vir:95449 Length: 584 99.6 9.9E-15 6.1E-18 97.4 30.6 452 1-476 1-584 (584) 94 protein:vir:79538 Length: 502 99.6 4.7E-13 2.9E-16 88.2 40.0 417 9-479 1-496 (502) 95 protein:vir:77597 Length: 725 99.6 3.8E-14 2.4E-17 94.2 29.4 451 1-479 1-625 (725) 96 protein:vir:3420 Length: 533 # 99.6 1.1E-12 7E-16 86.1 38.5 427 7-479 1-531 (533) 97 protein:vir:100920 Length: 725 99.5 9.3E-14 5.8E-17 92.0 29.4 452 1-479 1-629 (725) 98 protein:vir:9263 Length: 725 # 99.5 6.4E-14 4E-17 92.9 27.0 452 1-479 1-608 (725) 99 protein:vir:6382 Length: 553 # 99.5 1.5E-12 9.3E-16 85.4 34.3 432 1-479 1-548 (553) 100 protein:vir:389 Length: 530 # 99.5 3.5E-12 2.2E-15 83.4 37.8 424 1-479 1-527 (530) 101 protein:vir:105429 Length: 708 99.5 3.3E-13 2E-16 89.0 29.7 459 1-479 1-641 (708) 102 protein:vir:3520 Length: 720 # 99.5 4.8E-13 3E-16 88.1 29.6 453 1-479 1-644 (720) 103 protein:vir:10321 Length: 495 99.5 5.7E-12 3.5E-15 82.2 36.7 426 9-479 1-491 (495) 104 protein:vir:105520 Length: 706 99.5 1.4E-12 8.9E-16 85.5 30.5 457 1-479 1-640 (706) 105 protein:vir:172 Length: 708 # 99.5 1.1E-12 6.5E-16 86.3 29.7 459 1-479 1-641 (708) 106 protein:vir:96738 Length: 505 99.5 9.1E-12 5.6E-15 81.1 34.7 429 1-478 1-505 (505) 107 protein:vir:102668 Length: 547 99.4 2E-11 1.2E-14 79.3 38.8 447 19-479 1-542 (547) 108 protein:vir:95542 Length: 548 99.4 3.9E-11 2.4E-14 77.7 38.2 430 9-479 1-493 (548) 109 protein:vir:5249 Length: 437 # 99.4 3.9E-12 2.4E-15 83.1 26.2 382 37-479 1-433 (437) 110 protein:vir:94599 Length: 641 99.3 8.6E-11 5.4E-14 75.8 32.4 467 2-479 1-601 (641) 111 protein:vir:3139 Length: 599 # 99.3 8.3E-12 5.1E-15 81.3 26.4 459 1-479 1-597 (599) 112 protein:vir:95821 Length: 763 99.3 4E-11 2.5E-14 77.6 29.6 441 5-479 1-658 (763) 113 protein:vir:104338 Length: 422 99.3 9.5E-12 5.9E-15 81.0 24.8 379 37-477 1-422 (422) 114 protein:vir:96068 Length: 765 99.3 5.9E-11 3.7E-14 76.6 28.8 394 1-479 71-537 (765) 115 protein:vir:107662 Length: 427 99.3 1.3E-11 8E-15 80.3 23.7 380 32-479 1-427 (427) 116 protein:vir:107742 Length: 537 99.2 4.6E-11 2.9E-14 77.2 25.6 411 1-479 47-525 (537) 117 protein:vir:99563 Length: 862 99.2 5.1E-11 3.2E-14 77.0 25.5 406 1-479 84-563 (862) 118 protein:vir:103765 Length: 549 99.2 6.5E-10 4.1E-13 70.9 35.7 444 1-479 1-546 (549) 119 protein:vir:94049 Length: 532 99.2 5.2E-10 3.2E-13 71.5 29.3 426 1-479 1-512 (532) 120 protein:vir:1538 Length: 535 # 99.1 1.5E-09 9E-13 69.0 37.7 441 1-479 1-517 (535) 121 protein:vir:79647 Length: 435 99.1 5.4E-11 3.4E-14 76.9 21.2 385 2-478 1-435 (435) 122 protein:vir:98506 Length: 555 99.1 1.8E-09 1.1E-12 68.5 36.7 448 1-479 1-539 (555) 123 protein:vir:107404 Length: 555 99.1 1.8E-09 1.1E-12 68.5 36.7 448 1-479 1-539 (555) 124 protein:vir:107822 Length: 555 99.1 1.8E-09 1.1E-12 68.5 36.7 448 1-479 1-539 (555) 125 protein:vir:8883 Length: 543 # 99.0 5.9E-09 3.7E-12 65.7 34.6 443 1-479 1-519 (543) 126 protein:vir:3361 Length: 535 # 99.0 9.2E-09 5.7E-12 64.6 40.2 440 7-479 1-523 (535) 127 protein:vir:95315 Length: 559 98.9 1.3E-08 7.8E-12 63.9 35.7 448 16-479 1-536 (559) 128 protein:vir:94572 Length: 535 98.9 1.6E-08 9.8E-12 63.4 32.6 441 1-479 1-521 (535) 129 protein:vir:7321 Length: 556 # 98.9 2E-08 1.2E-11 62.8 36.2 444 16-479 1-542 (556) 130 protein:vir:10447 Length: 536 98.9 2.7E-08 1.7E-11 62.1 35.4 440 1-479 1-535 (536) 131 protein:vir:100039 Length: 522 98.8 2.9E-08 1.8E-11 61.9 30.2 421 22-479 1-517 (522) 132 protein:vir:2198 Length: 536 # 98.8 3.5E-08 2.2E-11 61.4 36.6 440 1-479 1-535 (536) 133 protein:vir:9359 Length: 348 # 98.7 7.3E-08 4.6E-11 59.7 27.9 319 93-479 1-348 (348) 134 protein:vir:105002 Length: 432 98.7 9.7E-08 6E-11 59.0 31.3 387 22-479 1-431 (432) 135 protein:vir:107605 Length: 432 98.7 9.7E-08 6E-11 59.0 31.3 387 22-479 1-431 (432) 136 protein:vir:102855 Length: 432 98.7 9.7E-08 6E-11 59.0 31.3 387 22-479 1-431 (432) 137 protein:vir:94709 Length: 522 98.7 1.1E-07 7.1E-11 58.7 39.1 440 1-479 1-515 (522) 138 protein:vir:102080 Length: 429 98.6 2.1E-07 1.3E-10 57.2 30.5 389 9-477 1-429 (429) 139 protein:vir:79233 Length: 526 98.6 2.2E-07 1.4E-10 57.1 31.6 406 1-479 1-448 (526) 140 protein:vir:1380 Length: 422 # 98.5 3.5E-07 2.2E-10 56.0 31.8 395 9-476 1-422 (422) 141 protein:vir:3153 Length: 467 # 98.5 3.8E-07 2.3E-10 55.8 29.3 371 72-479 1-445 (467) 142 protein:vir:99232 Length: 526 98.5 4E-07 2.5E-10 55.7 33.2 406 1-479 1-448 (526) 143 protein:vir:103860 Length: 528 98.5 4.3E-07 2.7E-10 55.5 32.6 405 1-479 1-451 (528) 144 protein:vir:63755 Length: 547 98.5 4.7E-07 2.9E-10 55.3 26.7 423 2-479 1-523 (547) 145 protein:vir:1986 Length: 512 # 98.4 6.3E-07 3.9E-10 54.6 32.3 405 1-479 1-440 (512) 146 protein:vir:99853 Length: 488 98.4 6.4E-07 4E-10 54.5 29.6 376 28-479 1-408 (488) 147 protein:vir:102727 Length: 945 98.4 7.3E-07 4.5E-10 54.2 28.0 417 1-479 12-529 (945) 148 protein:vir:4454 Length: 414 # 98.4 8.2E-07 5.1E-10 54.0 30.5 383 9-479 1-412 (414) 149 protein:vir:81152 Length: 411 98.4 8.7E-07 5.4E-10 53.8 31.2 379 37-479 1-411 (411) 150 protein:vir:99672 Length: 532 98.4 9.1E-07 5.6E-10 53.7 34.9 442 7-479 1-531 (532) 151 protein:vir:80644 Length: 551 98.4 9.1E-07 5.6E-10 53.7 29.5 428 1-479 1-518 (551) 152 protein:vir:105782 Length: 449 98.4 9.8E-07 6.1E-10 53.5 23.1 391 20-479 1-445 (449) 153 protein:vir:3843 Length: 397 # 98.3 1.2E-06 7.5E-10 53.0 29.2 373 9-478 1-397 (397) 154 protein:vir:8418 Length: 409 # 98.3 1.3E-06 8.3E-10 52.8 29.1 374 9-479 1-405 (409) 155 protein:vir:2683 Length: 412 # 98.3 1.4E-06 8.8E-10 52.6 29.3 384 9-479 1-412 (412) 156 protein:vir:94426 Length: 409 98.3 1.5E-06 9.6E-10 52.4 30.4 381 19-479 1-409 (409) 157 protein:vir:1785 Length: 555 # 98.3 1.6E-06 1E-09 52.3 36.2 433 20-479 1-546 (555) 158 protein:vir:9408 Length: 441 # 98.3 1.8E-06 1.1E-09 52.1 30.0 400 9-478 1-441 (441) 159 protein:vir:79984 Length: 441 98.3 1.8E-06 1.1E-09 52.1 30.0 400 9-478 1-441 (441) 160 protein:vir:93943 Length: 409 98.3 1.8E-06 1.1E-09 52.0 29.9 380 19-479 1-409 (409) 161 protein:vir:81095 Length: 416 98.3 1.8E-06 1.1E-09 52.0 31.6 379 22-478 1-416 (416) 162 protein:vir:4598 Length: 416 # 98.3 1.8E-06 1.1E-09 52.0 31.6 379 22-478 1-416 (416) 163 protein:vir:79772 Length: 648 98.3 2E-06 1.3E-09 51.8 33.5 410 1-479 11-496 (648) 164 protein:vir:6322 Length: 510 # 98.2 2.1E-06 1.3E-09 51.7 32.2 428 24-479 1-506 (510) 165 protein:vir:1266 Length: 416 # 98.2 2.2E-06 1.3E-09 51.6 30.0 378 23-476 1-416 (416) 166 protein:vir:96980 Length: 409 98.2 2.4E-06 1.5E-09 51.4 30.0 381 19-479 1-409 (409) 167 protein:vir:102118 Length: 409 98.2 2.9E-06 1.8E-09 50.9 29.1 375 42-478 1-409 (409) 168 protein:vir:93610 Length: 454 98.2 3.4E-06 2.1E-09 50.6 31.1 391 24-479 1-437 (454) 169 protein:vir:78696 Length: 542 98.1 3.8E-06 2.4E-09 50.3 35.4 424 17-479 1-538 (542) 170 protein:vir:483 Length: 413 # 98.1 3.9E-06 2.4E-09 50.2 30.0 382 23-479 1-411 (413) 171 protein:vir:103330 Length: 517 98.1 4.2E-06 2.6E-09 50.0 35.0 425 7-478 1-517 (517) 172 protein:vir:98396 Length: 441 98.1 4.7E-06 2.9E-09 49.8 30.0 374 44-478 1-441 (441) 173 protein:vir:7407 Length: 392 # 98.1 4.7E-06 2.9E-09 49.8 30.8 370 7-479 1-390 (392) 174 protein:vir:5737 Length: 419 # 98.1 5.1E-06 3.2E-09 49.6 29.2 369 41-479 1-408 (419) 175 protein:vir:960 Length: 413 # 98.0 6.5E-06 4.1E-09 49.0 29.2 373 7-479 1-413 (413) 176 protein:vir:101648 Length: 518 98.0 7.3E-06 4.5E-09 48.7 31.2 393 14-479 1-434 (518) 177 protein:vir:4156 Length: 542 # 98.0 8.5E-06 5.3E-09 48.4 23.2 395 11-479 1-469 (542) 178 protein:vir:96988 Length: 516 98.0 8.9E-06 5.5E-09 48.3 35.0 428 1-479 1-516 (516) 179 protein:vir:1023 Length: 392 # 97.9 1.3E-05 7.8E-09 47.5 29.4 370 7-479 1-390 (392) 180 protein:vir:3989 Length: 392 # 97.9 1.3E-05 7.8E-09 47.5 29.4 370 7-479 1-390 (392) 181 protein:vir:78942 Length: 510 97.9 1.3E-05 8.1E-09 47.4 34.8 428 24-479 1-504 (510) 182 protein:vir:80796 Length: 574 97.9 1.4E-05 8.9E-09 47.1 29.7 428 5-479 1-516 (574) 183 protein:vir:7853 Length: 518 # 97.8 1.5E-05 9.5E-09 47.0 30.1 393 14-479 1-432 (518) 184 protein:vir:7017 Length: 515 # 97.8 1.6E-05 1E-08 46.9 38.3 424 7-479 1-512 (515) 185 protein:vir:77981 Length: 448 97.8 1.9E-05 1.1E-08 46.5 28.1 383 1-479 1-439 (448) 186 protein:vir:107880 Length: 491 97.8 1.9E-05 1.2E-08 46.5 28.0 392 1-479 1-419 (491) 187 protein:vir:4194 Length: 540 # 97.8 2.2E-05 1.3E-08 46.2 24.1 394 2-479 1-460 (540) 188 protein:vir:4952 Length: 386 # 97.7 2.5E-05 1.5E-08 45.8 31.3 369 9-477 1-386 (386) 189 protein:vir:189 Length: 424 # 97.6 4.3E-05 2.6E-08 44.5 29.8 388 9-475 1-424 (424) 190 protein:vir:105064 Length: 421 97.6 4.6E-05 2.9E-08 44.4 30.0 377 22-479 1-417 (421) 191 protein:vir:105641 Length: 516 97.5 4.8E-05 3E-08 44.3 37.2 428 1-479 1-513 (516) 192 protein:vir:100150 Length: 437 97.5 4.9E-05 3E-08 44.2 32.2 384 32-479 1-436 (437) 193 protein:vir:10362 Length: 432 97.5 5.3E-05 3.3E-08 44.0 31.2 380 31-479 1-426 (432) 194 protein:vir:78641 Length: 278 97.5 5.5E-05 3.4E-08 43.9 26.6 261 93-415 1-278 (278) 195 protein:vir:1884 Length: 424 # 97.5 6.4E-05 3.9E-08 43.6 30.1 380 7-475 1-424 (424) 196 protein:vir:79063 Length: 491 97.4 7.2E-05 4.5E-08 43.3 27.9 391 1-479 1-419 (491) 197 protein:vir:81072 Length: 432 97.4 7.5E-05 4.6E-08 43.2 31.1 384 1-479 1-428 (432) 198 protein:vir:1326 Length: 457 # 97.4 8.4E-05 5.2E-08 42.9 29.9 396 9-479 1-447 (457) 199 protein:vir:6240 Length: 457 # 97.4 8.5E-05 5.3E-08 42.9 31.6 395 9-479 1-449 (457) 200 protein:vir:4828 Length: 382 # 97.4 8.6E-05 5.3E-08 42.9 31.0 365 9-477 1-382 (382) 201 protein:vir:4337 Length: 434 # 97.4 8.7E-05 5.4E-08 42.9 30.2 382 1-478 1-434 (434) 202 protein:vir:100882 Length: 383 97.3 0.00011 7E-08 42.2 30.0 363 9-478 1-383 (383) 203 protein:vir:100691 Length: 535 97.2 0.00012 7.3E-08 42.1 32.9 425 2-479 1-527 (535) 204 protein:vir:9702 Length: 406 # 97.2 0.00012 7.3E-08 42.1 28.6 372 9-479 1-406 (406) 205 protein:vir:106716 Length: 698 97.2 0.00013 7.9E-08 41.9 23.2 418 1-479 46-544 (698) 206 protein:vir:78589 Length: 695 97.2 0.00013 8E-08 41.9 24.1 414 1-479 46-540 (695) 207 protein:vir:4854 Length: 386 # 97.2 0.00014 8.5E-08 41.8 30.0 364 9-478 1-386 (386) 208 protein:vir:4995 Length: 384 # 97.2 0.00015 9E-08 41.6 31.5 359 9-479 1-383 (384) 209 protein:vir:3648 Length: 695 # 97.1 0.00018 1.1E-07 41.1 24.1 406 1-479 51-540 (695) 210 protein:vir:4509 Length: 424 # 97.0 0.00023 1.4E-07 40.6 29.6 384 27-478 1-424 (424) 211 protein:vir:3868 Length: 417 # 97.0 0.00024 1.5E-07 40.5 30.5 372 44-479 1-413 (417) 212 protein:vir:1431 Length: 419 # 96.9 0.00024 1.5E-07 40.4 29.4 380 22-479 1-414 (419) 213 protein:vir:101541 Length: 694 96.9 0.00026 1.6E-07 40.3 24.4 404 1-479 59-539 (694) 214 protein:vir:97060 Length: 432 96.9 0.00029 1.8E-07 40.0 31.0 380 31-479 1-426 (432) 215 protein:vir:1082 Length: 359 # 96.8 0.0003 1.9E-07 39.9 28.1 337 9-451 1-359 (359) 216 protein:vir:80333 Length: 419 96.8 0.00036 2.2E-07 39.5 31.0 374 22-479 1-407 (419) 217 protein:vir:95378 Length: 406 96.7 0.00038 2.3E-07 39.4 30.2 370 9-479 1-405 (406) 218 protein:vir:100187 Length: 385 96.7 0.00042 2.6E-07 39.1 28.6 363 9-478 1-385 (385) 219 protein:vir:99312 Length: 563 96.6 0.00049 3E-07 38.7 30.8 426 1-479 1-527 (563) 220 protein:vir:95599 Length: 563 96.6 0.00049 3E-07 38.7 30.8 426 1-479 1-527 (563) 221 protein:vir:79511 Length: 448 96.1 0.00095 5.9E-07 37.2 29.4 401 1-479 1-439 (448) 222 protein:vir:80211 Length: 514 96.1 0.001 6.5E-07 36.9 37.4 423 24-479 1-513 (514) 223 protein:vir:81218 Length: 423 95.8 0.0015 9.3E-07 36.1 30.9 383 22-479 1-423 (423) 224 protein:vir:100249 Length: 431 95.5 0.0019 1.2E-06 35.5 33.4 368 9-479 1-430 (431) 225 protein:vir:80134 Length: 403 95.5 0.002 1.2E-06 35.4 28.4 366 9-479 1-402 (403) 226 protein:vir:108215 Length: 469 95.5 0.002 1.3E-06 35.3 31.1 402 2-479 1-453 (469) 227 protein:vir:103219 Length: 201 94.8 0.001 6.2E-07 37.0 9.4 176 249-477 1-201 (201) 228 protein:vir:99452 Length: 651 94.7 0.0036 2.2E-06 34.0 23.3 440 13-479 1-533 (651) 229 protein:vir:6210 Length: 394 # 94.6 0.004 2.5E-06 33.7 27.0 361 9-479 1-394 (394) 230 protein:vir:96579 Length: 576 94.1 0.0053 3.3E-06 33.1 31.8 406 1-479 35-518 (576) 231 protein:vir:94666 Length: 723 92.8 0.0099 6.1E-06 31.6 33.4 372 50-479 1-445 (723) 232 protein:vir:8317 Length: 409 # 92.6 0.011 6.7E-06 31.4 26.1 360 22-475 1-409 (409) 233 protein:vir:104259 Length: 403 92.2 0.012 7.7E-06 31.0 28.0 365 18-479 1-399 (403) 234 protein:vir:98816 Length: 446 92.0 0.013 8.2E-06 30.9 30.2 392 7-449 1-446 (446) 235 protein:vir:4089 Length: 395 # 91.8 0.014 8.7E-06 30.7 25.1 362 22-479 1-393 (395) 236 protein:vir:101647 Length: 460 91.4 0.016 1E-05 30.4 33.3 386 24-476 1-460 (460) 237 protein:vir:9507 Length: 395 # 90.6 0.02 1.2E-05 29.9 24.6 354 40-477 1-395 (395) 238 protein:vir:100650 Length: 395 90.6 0.02 1.2E-05 29.9 24.6 354 40-477 1-395 (395) 239 protein:vir:101289 Length: 395 90.6 0.02 1.2E-05 29.9 24.6 354 40-477 1-395 (395) 240 protein:vir:8100 Length: 466 # 90.4 0.021 1.3E-05 29.8 30.0 403 9-479 1-464 (466) 241 protein:vir:78161 Length: 355 90.2 0.022 1.4E-05 29.7 24.5 285 136-479 1-324 (355) 242 protein:vir:104892 Length: 558 89.0 0.029 1.8E-05 29.0 26.3 419 1-479 1-537 (558) 243 protein:vir:104500 Length: 537 87.9 0.036 2.2E-05 28.5 25.3 408 1-479 1-524 (537) 244 protein:vir:345 Length: 663 # 86.9 0.043 2.6E-05 28.1 26.1 443 1-479 1-581 (663) 245 protein:vir:103177 Length: 533 86.3 0.046 2.9E-05 27.9 25.2 422 1-479 1-518 (533) 246 protein:vir:95254 Length: 488 81.3 0.087 5.4E-05 26.4 29.5 416 1-479 1-471 (488) 247 protein:vir:101189 Length: 516 81.1 0.089 5.5E-05 26.3 21.8 389 1-479 45-515 (516) 248 protein:vir:101806 Length: 516 81.1 0.089 5.5E-05 26.3 21.8 389 1-479 45-515 (516) 249 protein:vir:95965 Length: 385 81.0 0.09 5.6E-05 26.3 24.0 351 40-478 1-385 (385) 250 protein:vir:267 Length: 348 # 80.5 0.094 5.9E-05 26.2 22.9 300 49-422 1-348 (348) 251 protein:vir:5839 Length: 533 # 80.0 0.099 6.2E-05 26.1 22.5 400 1-479 20-486 (533) 252 protein:vir:78191 Length: 351 79.6 0.1 6.4E-05 26.0 20.6 305 32-422 1-351 (351) 253 protein:vir:4698 Length: 251 # 76.5 0.14 8.4E-05 25.4 19.7 240 9-324 1-251 (251) 254 protein:vir:6896 Length: 523 # 76.2 0.14 8.6E-05 25.3 23.4 390 1-479 47-523 (523) 255 protein:vir:103458 Length: 524 75.9 0.14 8.8E-05 25.2 23.9 399 1-479 27-524 (524) 256 protein:vir:7208 Length: 524 # 75.9 0.14 8.8E-05 25.2 23.8 399 1-479 27-524 (524) 257 protein:vir:98567 Length: 340 74.1 0.16 0.0001 24.9 19.6 302 32-419 1-340 (340) 258 protein:vir:78749 Length: 337 69.8 0.22 0.00013 24.2 21.1 299 32-418 1-337 (337) 259 protein:vir:100598 Length: 516 62.0 0.34 0.00021 23.1 23.9 400 1-479 45-515 (516) 260 protein:vir:79207 Length: 351 61.1 0.36 0.00022 23.0 18.8 304 32-428 1-351 (351) 261 protein:vir:78310 Length: 376 60.9 0.36 0.00023 23.0 26.0 344 9-474 1-376 (376) 262 protein:vir:106282 Length: 521 60.0 0.38 0.00024 22.9 25.1 391 1-479 47-521 (521) 263 protein:vir:103971 Length: 376 57.4 0.43 0.00027 22.6 22.5 315 32-422 1-376 (376) 264 protein:vir:79150 Length: 368 56.8 0.45 0.00028 22.5 19.6 320 32-429 1-368 (368) 265 protein:vir:1150 Length: 350 # 55.4 0.48 0.0003 22.3 22.4 307 32-418 1-350 (350) 266 protein:vir:5691 Length: 344 # 55.0 0.49 0.0003 22.3 22.3 299 32-420 1-344 (344) 267 protein:vir:858 Length: 378 # 54.3 0.51 0.00031 22.2 23.6 326 37-479 1-375 (378) 268 protein:vir:2013 Length: 344 # 50.2 0.62 0.00038 21.7 19.2 302 32-420 1-344 (344) 269 protein:vir:94869 Length: 378 43.5 0.84 0.00052 21.0 23.5 327 37-479 1-375 (378) 270 protein:vir:106999 Length: 564 41.7 0.91 0.00057 20.8 22.2 428 1-479 1-537 (564) 271 protein:vir:6058 Length: 344 # 41.7 0.92 0.00057 20.8 22.8 304 32-420 1-344 (344) 272 protein:vir:1661 Length: 378 # 41.4 0.93 0.00057 20.8 23.4 326 37-479 1-375 (378) 273 protein:vir:93867 Length: 378 37.4 1.1 0.00069 20.3 22.0 324 37-479 1-375 (378) 274 protein:vir:5665 Length: 511 # 37.1 1.1 0.0007 20.3 22.3 409 1-475 1-511 (511) 275 protein:vir:94002 Length: 378 36.9 1.1 0.00071 20.3 23.3 324 37-479 1-375 (378) 276 protein:vir:98265 Length: 524 33.6 1.3 0.00084 19.9 25.0 397 1-479 51-524 (524) 277 protein:vir:108049 Length: 524 31.0 1.5 0.00095 19.6 24.6 402 1-479 7-524 (524) 278 protein:vir:98853 Length: 219 28.3 1.8 0.0011 19.2 14.0 196 174-419 1-219 (219) 279 protein:vir:98444 Length: 434 24.6 2.2 0.0013 18.7 20.7 371 67-479 1-420 (434) 280 protein:vir:9641 Length: 395 # 22.8 2.4 0.0015 18.5 23.3 359 9-479 1-395 (395) 281 protein:vir:81017 Length: 521 22.4 2.5 0.0015 18.4 25.1 405 1-479 41-521 (521) 282 protein:vir:3780 Length: 345 # 20.6 2.7 0.0017 18.2 22.8 293 32-416 1-345 (345) No 1 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=100.00 E-value=1.2e-110 Score=623.22 Aligned_cols=479 Identities=100% Similarity=1.482 Sum_probs=462.1 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |+|+|+|+++.|...+...++.++.+.|++++.+|+.++|+++++||+|+|++++++.....+.....+..++++|+++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~~ki~~~ 80 (479) T protein:vir:79 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) T ss_pred CCCceecccceEeeccccCChhHHHHHHHHHHhhhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Confidence 99999999999999999999999999999999999999999999999999999999988888888888888999999999 Q ss_pred hHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEE Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIP 160 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~ 160 (479) |++.||++.++|++|+|++++++++..+++++.|++|+|+..+.++++.+++||++|+++|.|++|++++++++|++++| T Consensus 81 ~~~~Ivd~~~~~l~g~p~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~ 160 (479) T protein:vir:79 81 YHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIP 160 (479) T ss_pred hHHHHHHHHHhhhhcCCceeccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEccceeEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 161 IWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKV 240 (479) Q Consensus 161 ~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 240 (479) +||+....++.+++|+|+..+.+++.+.++++|+++.+++|+..++.+.................++......+|+||.| T Consensus 161 v~d~~~~~~~~~~ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 240 (479) T protein:vir:79 161 IWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKV 240 (479) T ss_pred EEeCCCCCceEEEEEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcc Confidence 99998888899999999999989999999999999999999999988888888788888888888888899999999999 Q ss_pred ceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeeec Q lcl|Aclame:pro 241 PFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEI 320 (479) Q Consensus 241 Pvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (479) |||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|+++...+++...++.++++.++++++++|+++ T Consensus 241 Pvv~~~nn~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 320 (479) T protein:vir:79 241 PFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEI 320 (479) T ss_pred cEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccccchhhhhhccceecCCCCcceEEec Confidence 99999999999999999999999999999999999999999999999998888888888888899999999999999999 Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 321 NIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKS 400 (479) Q Consensus 321 ~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~ 400 (479) +++.++++++++.|++.|+.+|++|+++.+.+||+||+|++++++++.++|..+++.|+++|++++++++++++..++.+ T Consensus 321 ~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~ 400 (479) T protein:vir:79 321 NIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKS 400 (479) T ss_pred cCCHHHHHHHHHHHHHHHHHHhCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888 Q ss_pred cccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 401 YDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 401 ~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) .+..+++|+|++++|.|.++.|+++++++|++|+||+++++|+++|+++|++||++|++++.+..+..++..+++.||| T Consensus 401 ~~~~~i~i~f~~~~p~~~~~~a~~~~kl~g~iS~et~l~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~e~ 479 (479) T protein:vir:79 401 YDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) T ss_pred cccccceEEeCCCCCcCHHHHHHHHHHHhccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhccCcccCCCcCcC Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=100.00 E-value=1.1e-98 Score=557.62 Aligned_cols=474 Identities=36% Similarity=0.670 Sum_probs=419.3 Q ss_pred CCCcc------cCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccc-cccccccC Q lcl|Aclame:pro 1 MLNIY------ISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGA-KVDDFTKV 73 (479) Q Consensus 1 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~-~~~~~~~~ 73 (479) |+|+| ++....+.............+.|++++.+++.++++++.+||.|+|++++++........ ......++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (503) T protein:vir:59 1 MADIYPLGKTHTEELNEIIVESAKEIAEPDTTMIQKLIDEHNPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDDTKT 80 (503) T ss_pred CcccccCChhhHHhHHHhhhhhhhhccchhHHHHHHHHHhhcHHHHHHHHHHhccccchhhccchhcccccccccccccc Confidence 99998 455666666777777888889999999999999999999999999999988766554433 34456678 Q ss_pred cceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEE Q lcl|Aclame:pro 74 NNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVII 153 (479) Q Consensus 74 ~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~ 153 (479) ++|+++||++.||++.++|++|+|+++++++++..+.++.|++|+|+..+.++++.++++|++|++||+|++|+++++++ T Consensus 81 ~~ri~~n~~~~ivd~~~~yl~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~~~ 160 (503) T protein:vir:59 81 NNRTSHAWHKLFVDQKTQYLVGEPVTFTSDNKTLLEYVNELADDDFDDILNETVKNMSNKGIEYWHPFVDEEGEFDYVIF 160 (503) T ss_pred cceeecchHHHHHHHHHhhhhcCCeeeccCcHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCeEEEEEeecCCCceEEEEE Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 154 PAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNK 233 (479) Q Consensus 154 ~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479) +|++++|+|++....++.+++++|...+.+++.+.++++|+++++++|...++.+........ ....+....... T Consensus 161 ~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 235 (503) T protein:vir:59 161 PAEEMIVVYKDNTRRDILFALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGE-----NNPRPHMTKGGQ 235 (503) T ss_pred ccceeEEEEeCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCcccccccccc-----cccccceeecce Confidence 999999999999888999999999998888889999999999999999988777644322111 112233345677 Q ss_pred cccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCC Q lcl|Aclame:pro 234 EQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGG 313 (479) Q Consensus 234 ~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (479) +|+|++||||+|+|+..|+|+|++++++||+||.++|++++.++++++|+++++|.+++...++..+++..+++.+++++ T Consensus 236 ~~~~~~vPiv~~~nn~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (503) T protein:vir:59 236 AIGWGRVPIIPFKNNEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYDGENPKEFTANLRYHSVIKVSGDG 315 (503) T ss_pred eccCCccceEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEeecCCccccchhhhhhhcccceeccCCC Confidence 99999999999999999999999999999999999999999999999999999999988888888889999999999999 Q ss_pred cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEY 392 (479) Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~ 392 (479) ++++++++++.++++.+++.+++.|+.++++|+++++.+ |++||+|++++++++.+||.++++.|+.+|++++++|+.+ T Consensus 316 ~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~ 395 (503) T protein:vir:59 316 GVDTLRAEIPVDSAAKELERIQDELYKSAQAVDNSPETIGGGATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEY 395 (503) T ss_pred cceeEeccCCHHHHHHHHHHHHHHHHHHhcccCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 999999999999999999999999999999999887654 7899999999999999999999999999999999999999 Q ss_pred HHhcCCCcc-ccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccC Q lcl|Aclame:pro 393 LKISGNKSY-DYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIP 469 (479) Q Consensus 393 ~~~~~~~~~-~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~ 469 (479) ++..+.... +..+++++|++++|.|.++.+++++++ +|++|+||+++++|+++|+++|++||++|+++..+..+... T Consensus 396 ~~~~~~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~ 475 (503) T protein:vir:59 396 LRNTGKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVARNPFVQDPEEELARIEEEMNQYAEMQGNLL 475 (503) T ss_pred HHhccCcccccccceeEEeCCCCCCCHHHHHHHHHHHHhCCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhcccc Confidence 998766553 356799999999999999999999998 58999999999999999999999999999887766555554 Q ss_pred CCCCCCcCCC Q lcl|Aclame:pro 470 NNQDGVIDET 479 (479) Q Consensus 470 ~~~~~~~det 479 (479) +...+..+++ T Consensus 476 ~~~~~~~~~~ 485 (503) T protein:vir:59 476 DDEGGDDDLE 485 (503) T ss_pred CccCCCCCCC Confidence 4433333332 No 3 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=100.00 E-value=3.9e-95 Score=538.15 Aligned_cols=458 Identities=31% Similarity=0.509 Sum_probs=395.2 Q ss_pred cChHHHHHHHHHHHHHh--hHHHHHHHHHHhccCCcccccccccccc--cccccccccCcceeecchHHHHHHHHHhhhh Q lcl|Aclame:pro 19 ESTINLVKVIEHYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLD--GAKVDDFTKVNNKAINNYHKLLVDQKVGYSV 94 (479) Q Consensus 19 ~~~~~~~~~i~~~~~~~--~~~~~~~~~~yy~g~~~~~~~~~~~~~~--~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~ 94 (479) .....+.++|++++.++ +..||.++++||+|+|+|++++...... .....+..++++|+++||++.||++.++||| T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~ 80 (470) T protein:vir:10 1 MELDALKKLIQNTSTSRNDLINNYKQAVNYYENKTDITTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLLVDQEAGYVA 80 (470) T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccchhcccccccccccccCCcccccchHHHHHHhhhhhee Confidence 66667777777776654 5678999999999999999886543322 3334556688999999999999999999999 Q ss_pred ccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEE Q lcl|Aclame:pro 95 GNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFI 174 (479) Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i 174 (479) |+||++++++++..+.++.+++++++..+.++++.++++|++|+++|+|++|++++.+++|.+++|+|++...+++.+++ T Consensus 81 G~p~~~~~~d~~~~~~l~~~~~~~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~~~~~~~p~~~~~v~d~~~~~~~~a~i 160 (470) T protein:vir:10 81 SVFPDIDVGKDADNKKIIDVLGDDRALTLNGLLVDSSNAGRAWLHYWIDEDGNFRYGIIQPDQITPIYATTLDNKLLGIL 160 (470) T ss_pred ccceeeecCchHHHHHHHHHHhhhHHHHHHHHHHHHhhcCeeEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEE Confidence 99999999999888899998888999999999999999999999999999999999999999999999999888999999 Q ss_pred EEEeeecccCc-eEEEEEEEeCCcEEEEEEcCCcccccccccccc-ccccccccccccccccccccccceEEecCCCCCC Q lcl|Aclame:pro 175 RFYYIEDIDGN-KIKRVEYYTENDITYFIERGNSFIQEFLYDEYG-KMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCV 252 (479) Q Consensus 175 ~~~~~~~~~~~-~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~ 252 (479) |+|...+.++. .+.++++|+++.+++|...+.+........... ...............+|+||.||||+|+|++.|+ T Consensus 161 r~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~ 240 (470) T protein:vir:10 161 RSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFSKNKYRL 240 (470) T ss_pred EEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccccCCCeeeEEEeecCCCCC Confidence 99988776654 466789999999999988776544322211111 1112222334567788999999999999999999 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCC-----CCcceeeecCCCHHHH Q lcl|Aclame:pro 253 SDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDG-----GGGVDKLEINIPVEAK 327 (479) Q Consensus 253 s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 327 (479) |+|+++++|||+||.++|++++.++++++|+++++|+.+.+..++...++..+++.++. +++++|++++++.+++ T Consensus 241 sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lt~~~~~~~~ 320 (470) T protein:vir:10 241 PELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLTNYGGADLHQFMNDLRKYKSIKINNTGNGDNSGVDKLQIDIPVEAR 320 (470) T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCccccchhhhhhhhcCeEeccCCCCCcCceeEEEeecCChHHH Confidence 99999999999999999999999999999999999998888788888888888877754 4679999999999999 Q ss_pred HHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceee Q lcl|Aclame:pro 328 KELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQ 407 (479) Q Consensus 328 ~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~ 407 (479) +.++++|++.|+.+|++|+++...+||+||+||+++++++.+||.++++.|+++|++++++|+++++. .+.+..+++ T Consensus 321 ~~~~~~L~~~I~~~s~~p~~~~~~~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~l~~---~~~d~~~i~ 397 (470) T protein:vir:10 321 DDALKITRKNIFLFGQGIDPANFESSNASGVAIKMLYSHLELKAAKTQTYFEHAINELVRAIMRYLNF---SDADKRHIS 397 (470) T ss_pred HHHHHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcccceee Confidence 99999999999999999999999999999999999999999999999999999999999999998765 345678999 Q ss_pred EEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCCC-CcCCC Q lcl|Aclame:pro 408 ITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDG-VIDET 479 (479) Q Consensus 408 i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~-~~det 479 (479) ++|++++|.|.++.++++++++|++|+||+++++|+++|+++|++||++|++++.+..+..+...++ +.||- T Consensus 398 i~f~~~~p~d~~e~~~~~~~~~g~iS~et~l~~~p~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~~~~dde~ 470 (470) T protein:vir:10 398 QHWTRTKVEDSLTKAQIVSTVANYSSKEAVAKANPIVDDWQQELKDLAKDKEENDPYSNQADELNGKGVNDEQ 470 (470) T ss_pred EEeccCCCCCHHHHHHHHHHHhccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCC Confidence 9999999999999999999999999999999999999999999999999998887776665544333 33333 No 4 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=100.00 E-value=6e-95 Score=537.14 Aligned_cols=455 Identities=32% Similarity=0.562 Sum_probs=392.9 Q ss_pred cChHHHHHHHHHHHHHh--hHHHHHHHHHHhccCCccccccccccccc------ccccccccCcceeecchHHHHHHHHH Q lcl|Aclame:pro 19 ESTINLVKVIEHYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLDG------AKVDDFTKVNNKAINNYHKLLVDQKV 90 (479) Q Consensus 19 ~~~~~~~~~i~~~~~~~--~~~~~~~~~~yy~g~~~~~~~~~~~~~~~------~~~~~~~~~~~ri~~n~~~~iv~~~a 90 (479) .....+.+.|.+++.+| ++++|.++++||+|+|++++++....... .......++++|+++||++.||++.+ T Consensus 1 ~~~e~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~ 80 (471) T protein:vir:10 1 MEIEVIKKIISSQMVKHGKFVSQAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQKK 80 (471) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhhcccccccccccccccccceeccchhHHHHHhhh Confidence 66677778888887765 56789999999999999998776543332 22234556889999999999999999 Q ss_pred hhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCC-CCceEEEEEccceeEEEEcCCCCCc Q lcl|Aclame:pro 91 GYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINR-KGEFKYVIIPAEEAIPIWDSKRQRE 169 (479) Q Consensus 91 ~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~~~~~i~~~~p~~~~~~~d~~~~~~ 169 (479) +|++|+|+++++++++.++.++.|++|+|+..+.++++.++++|++|+++|+++ +|++++.+++|++++|+||++...+ T Consensus 81 ~yl~G~p~~~~~~~~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~~~~~~~~p~~~~~i~d~~~~~~ 160 (471) T protein:vir:10 81 AYALTYPPTFDVDDKKVNDMIVDVLGDDYERISKQLCVNAGNAGIAWLHVWKDASDNSFRYACVDSKEVIPIYSKSLDKK 160 (471) T ss_pred hhhcccCceeccCChHHHHHHHHHHhcCHHHHHHHHHHHHhhCCeEEEEEEeeCCCCeeEEEEEcccceEEEEcCCCCCc Confidence 999999999999999999999999999999999999999999999999999985 6999999999999999999988889 Q ss_pred eEEEEEEEeeec-ccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccc-cccccccccccccccccccceEEecC Q lcl|Aclame:pro 170 LVAFIRFYYIED-IDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMT-DIQEGHFRINNKEQGWGKVPFIPFKN 247 (479) Q Consensus 170 ~~~~i~~~~~~~-~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~vPvv~~~n 247 (479) +.+++|+|...+ .+++...++++|+++.+++|+..++............... .....+...+..+|+||.||||+|+| T Consensus 161 ~~~~ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n 240 (471) T protein:vir:10 161 SIGVLRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKHDFGLVPFIPFKN 240 (471) T ss_pred eEEEEEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCCceeEEEecc Confidence 999999998765 4456788999999999999998887655544433333222 23344556778899999999999999 Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCC-----CCcceeeecCC Q lcl|Aclame:pro 248 NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDG-----GGGVDKLEINI 322 (479) Q Consensus 248 ~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 322 (479) +..|+|+|+++++|||+||.++|++++.++++++|+++++|..++..+++...++.++++.+++ +++++|+++++ T Consensus 241 ~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~ 320 (471) T protein:vir:10 241 NEIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVLTNYGGQDKQEFLEDLKRYKMIKMDNDGMGDQSGVTTIAIDI 320 (471) T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccchhHHHhhcCCeEEecCCCCccCccceEEeecC Confidence 9999999999999999999999999999999999999999998888888888888888887754 35899999999 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc Q lcl|Aclame:pro 323 PVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYD 402 (479) Q Consensus 323 ~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~ 402 (479) +.++++.++++|++.|+.+|++|+++++.+||+||+||+++++++.+||..+++.|+++|++++++++.+++.. + T Consensus 321 ~~~~~~~~~~~l~~~I~~~s~tp~~~~~~~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-----d 395 (471) T protein:vir:10 321 PTEARNLILERTKKQIFISGQGVNPETDKLGNSSGVALKFLYSLLELKAGNMETQFRSGYATLVKMILKHLGLS-----D 395 (471) T ss_pred ChHHHHHHHHHHHHHHHHHhCCcCCCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----C Confidence 99999999999999999999999999999999999999999999999999999999999999999999987653 4 Q ss_pred cceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCC Q lcl|Aclame:pro 403 YKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDE 478 (479) Q Consensus 403 ~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~de 478 (479) ..+++|+|++++|.|+++.++++++++|++|+||+++++|+++|+++|++||++|+++..+......+..+...=| T Consensus 396 ~~~i~i~f~~~~p~n~~e~~~~~~kl~g~iS~et~~~~~p~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~e~~ 471 (471) T protein:vir:10 396 KLKIKQTWTRNSINNDTEMAQVVSTLATITSRENVAKSNPIVEDWQDELRLQKAEQEGRSEKLYDMEEVEHESEVE 471 (471) T ss_pred CceeEEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCccccC Confidence 5678999999999999999999999999999999999999999999999999999887655443332222111111 No 5 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=100.00 E-value=1.5e-93 Score=529.48 Aligned_cols=456 Identities=38% Similarity=0.680 Sum_probs=383.1 Q ss_pred CCCcc---------------cCcHHHHHHHHhccChHHHHHHHHHHHHHh--hHHHHHHHHHHhccCCcccccccccccc Q lcl|Aclame:pro 1 MLNIY---------------ISETDLIKVQLKKESTINLVKVIEHYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLD 63 (479) Q Consensus 1 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~yy~g~~~~~~~~~~~~~~ 63 (479) |+.+. .+.++.+..+... ..+.+.|.+++.+| ++.||+++.+||+|+|++++++...... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---e~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~ 77 (483) T protein:vir:12 1 MAQALIKGGNILYPSQPTQTEIFDAIVRTNNKP---ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDAT 77 (483) T ss_pred CccchhcCCceeecCcchhhhhhhcccccCCch---hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc Confidence 44332 2223333333433 23333444444333 4578999999999999999877554332 Q ss_pred cccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeC Q lcl|Aclame:pro 64 GAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYIN 143 (479) Q Consensus 64 ~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d 143 (479) ......++++|+++||++.||++.++||+|+|+++++++++..+.++.|++|+++..+.++++.+++||++|++||.| T Consensus 78 --~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~G~p~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~y~~v~~d 155 (483) T protein:vir:12 78 --GAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLD 155 (483) T ss_pred --ccccccccccccccchHHHHHHHHhhhhcccCceeccCChHHHHHHHHHHhccHHHHHHHHHHHHhhCCeEEEEEEEc Confidence 234566789999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccc Q lcl|Aclame:pro 144 RKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDI 223 (479) Q Consensus 144 ~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (479) ++|++++++++|++++++||+...+++++++|+|...+. .++++|+++++++|+..++....... . T Consensus 156 ~d~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~-----~~~~~y~~~~v~~~~~~~~~~~~~~~---------~ 221 (483) T protein:vir:12 156 EEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENE-----TKVEYWDKVTVNYYVYENGSLIPDYS---------N 221 (483) T ss_pred CCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeecc-----eEEEEEecCeEEEEEEeCCeeeeccc---------c Confidence 999999999999999999999888899999999986432 36899999999999887665433211 1 Q ss_pred cccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhc Q lcl|Aclame:pro 224 QEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRY 303 (479) Q Consensus 224 ~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~ 303 (479) ..........+|+||.||||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|.++....++...++. T Consensus 222 ~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~ 301 (483) T protein:vir:12 222 NLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDDQELPEFKRLLRY 301 (483) T ss_pred cccccccccccCCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhHHHhhhh Confidence 12233456789999999999999999999999999999999999999999999999999999999988888888888888 Q ss_pred ccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 YKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAI 382 (479) Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l 382 (479) .+++.++++++++|++++++.+++++++++|++.|+.+|++|+++++.+ ||+||+||++++.++..||.++++.|+++| T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l 381 (483) T protein:vir:12 302 YGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAI 381 (483) T ss_pred ccccccCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 8899999999999999999999999999999999999999999998876 689999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 383 RELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQK 462 (479) Q Consensus 383 ~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~ 462 (479) ++++++++++++.. .+..+++|+|++++|+|.++.++++++++|++|+||+++++|+++|+++|++||++|+++.. T Consensus 382 ~~~~~li~~~~~~~----~~~~~i~v~f~~~~p~~~~~~a~~~~kl~GiiS~et~~~~~~~v~d~~~E~~ri~~E~~~~~ 457 (483) T protein:vir:12 382 QELLWFVFEHFDIK----GEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQMEYN 457 (483) T ss_pred HHHHHHHHHHhcCC----CccceeeEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHH Confidence 99999999987653 35678999999999999999999999999999999999999999999999999999987665 Q ss_pred hhhhccCC-CCC--CCcCCC Q lcl|Aclame:pro 463 EYDDLIPN-NQD--GVIDET 479 (479) Q Consensus 463 ~~~~~~~~-~~~--~~~det 479 (479) ...+..+. ..+ +..+++ T Consensus 458 ~~~~~~~~~~~d~~~~~~~~ 477 (483) T protein:vir:12 458 KQLPNLDDGGADGAQQQERS 477 (483) T ss_pred hhcccccccccCCcccCCCC Confidence 44322221 111 112222 No 6 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=100.00 E-value=3.2e-93 Score=527.70 Aligned_cols=459 Identities=38% Similarity=0.685 Sum_probs=382.8 Q ss_pred CCCcccCcHHHHHHHH-hccChHHHHHHHHHHHHHh--hHHHHHHHHHHhccCCcccccccccccccccccccccCccee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQL-KKESTINLVKVIEHYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA 77 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri 77 (479) |-..--+.++.++..+ .......+.+.|.+++.+| +++|++++.+||+|+|++++++...... ......++++|+ T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~--~~~~~~~~~~ri 98 (492) T protein:vir:97 21 LYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDAT--GAVDPLKPDDRM 98 (492) T ss_pred eeccchhhhhHhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccccc--cccccccccccc Confidence 2221112222222111 1222333444555555444 5678999999999999998876544322 234556789999 Q ss_pred ecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccce Q lcl|Aclame:pro 78 INNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEE 157 (479) Q Consensus 78 ~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~ 157 (479) ++||++.||++.++||+|+|++++++++...+.++.|++|+++..+.++++++++||++|+++|.+++|++++++++|++ T Consensus 99 ~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~dg~~~~~~~~p~~ 178 (492) T protein:vir:97 99 ITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQ 178 (492) T ss_pred ccchHHHHHHHHhhhhcccCceeccCchHHHHHHHHHHhccHHHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 158 AIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGW 237 (479) Q Consensus 158 ~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (479) ++++||+...+++.+++|+|...+. .++++|+++.+++|...++....... ...++......+|+| T Consensus 179 ~~~i~d~~~~~~~~~~vr~~~~~~~-----~~~~~y~~~~v~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 244 (492) T protein:vir:97 179 GIPIWTDKEHEELEAFIRMYKLENE-----TKVEYWDKVTVNYYVYENGSLIPDYS---------NNLENSKTHFSTGSW 244 (492) T ss_pred eEEEEcCCCCCceEEEEEEEeeccc-----eeEEEEecCeEEEEEEecCeeeeccc---------ccccccccccccCCC Confidence 9999998888889999999986432 36899999999999887765432211 112234456789999 Q ss_pred cccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCccee Q lcl|Aclame:pro 238 GKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDK 317 (479) Q Consensus 238 g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (479) |.||||+|.|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|+.+.+..++...++..+++.++++++++| T Consensus 245 g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (492) T protein:vir:97 245 GKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDT 324 (492) T ss_pred CCcceEEecCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccchhHHHHHhhccceecCCCCccee Confidence 99999999999999999999999999999999999999999999999999998888888888888999999999999999 Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 318 LEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS 396 (479) Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 396 (479) ++++++.+++++++++|+++|+.+|++|+++++.+ ||+||+||++++.++..||.++++.|+++|++++++|+++++.. T Consensus 325 l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~ 404 (492) T protein:vir:97 325 IQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK 404 (492) T ss_pred EeccCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 99999999999999999999999999999998876 67999999999999999999999999999999999999987653 Q ss_pred CCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccC-CCCC-C Q lcl|Aclame:pro 397 GNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIP-NNQD-G 474 (479) Q Consensus 397 ~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~-~~~~-~ 474 (479) .+..+++++|++++|+|.++.++++++++|++|+||+++++|+++|+++|++||++|+++.....+... ...+ + T Consensus 405 ----~~~~~i~v~f~~~~p~~~~e~a~~~~kl~G~iS~et~l~~l~~v~d~~~Eleri~~E~~~~~~~~~~~~~~~~~~~ 480 (492) T protein:vir:97 405 ----GEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSA 480 (492) T ss_pred ----cccceeeEEecCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhccccCCCCCC Confidence 356789999999999999999999999999999999999999999999999999999876544332222 1111 1 Q ss_pred CcCCC Q lcl|Aclame:pro 475 VIDET 479 (479) Q Consensus 475 ~~det 479 (479) .++|. T Consensus 481 ~~~~~ 485 (492) T protein:vir:97 481 QQQER 485 (492) T ss_pred ccccc Confidence 11111 No 7 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=100.00 E-value=3.9e-93 Score=527.21 Aligned_cols=459 Identities=38% Similarity=0.681 Sum_probs=382.5 Q ss_pred CCCcccCcHHHHHH-HHhccChHHHHHHHHHHHHHh--hHHHHHHHHHHhccCCcccccccccccccccccccccCccee Q lcl|Aclame:pro 1 MLNIYISETDLIKV-QLKKESTINLVKVIEHYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA 77 (479) Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri 77 (479) |-..--+.++..+- .........+.+.|.+++.+| ++.|++++.+||+|+|++++++...... ......++++|+ T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~I~~~~~~~~~~--~~~~~~~~~~ri 98 (492) T protein:vir:94 21 LYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDAT--GAVDPLKPDDRM 98 (492) T ss_pred eecCccchhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc--cccccccccccc Confidence 21111112222211 111222334445555555544 5678999999999999998876554322 233456788999 Q ss_pred ecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccce Q lcl|Aclame:pro 78 INNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEE 157 (479) Q Consensus 78 ~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~ 157 (479) ++||++.||++.++|++|+|++++++++...+.|+.|++|+++..+.++++.+++||++|++||.|++|++++++++|.+ T Consensus 99 ~~n~~k~Ivd~~~~yl~G~p~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~a~~~G~a~~~v~~d~dg~~~~~~~~p~~ 178 (492) T protein:vir:94 99 ITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQ 178 (492) T ss_pred ccchHHHHHHHHHhhhcccCceeccCchHHHHHHHHHHhccHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEEEcccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 158 AIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGW 237 (479) Q Consensus 158 ~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (479) ++++||+...+++++++|+|...+. .++++|+++.+++|+..++....... ....+..+...+|+| T Consensus 179 ~~~v~d~~~~~~~~a~ir~~~~~~~-----~~~~~y~~~~v~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 244 (492) T protein:vir:94 179 GIPIWTDKEHEELEAFIRMYKLENE-----TKVEYWDKVTVNYYVYENGSLIPDYS---------NNLENSKTHFSTGSW 244 (492) T ss_pred eEEEEcCCCCCceEEEEEEEeeccc-----eeEEEEecCeEEEEEEecCeeeeccc---------cccccccccccccCC Confidence 9999998888899999999886432 36899999999999887765443221 112234456788999 Q ss_pred cccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCccee Q lcl|Aclame:pro 238 GKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDK 317 (479) Q Consensus 238 g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (479) |.||||+|+|+..|+|+|+++++|+|+||.++|++++.++++++|+++++|+++....++...++..+++.++++++++| T Consensus 245 g~vPvv~~~nn~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (492) T protein:vir:94 245 GKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDT 324 (492) T ss_pred CccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhhHHHHhhccceecCCCCccee Confidence 99999999999999999999999999999999999999999999999999999888888888888899999999999999 Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 318 LEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS 396 (479) Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 396 (479) ++++++.++++.++++|++.|+.+|++|+++++.+ ||+||+||+++++++..||.++++.|+.+|++++++++++++.. T Consensus 325 l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~ 404 (492) T protein:vir:94 325 IQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK 404 (492) T ss_pred EeccCCHHHHHHHHHHHHHHHHHHhCCcCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 99999999999999999999999999999998876 67999999999999999999999999999999999999987654 Q ss_pred CCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCC-CCC-C Q lcl|Aclame:pro 397 GNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPN-NQD-G 474 (479) Q Consensus 397 ~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~-~~~-~ 474 (479) .+..+++|+|++++|.|.++.++++++++|++|+||+++++|+++|+++|++||++|+++.....+...+ ..+ + T Consensus 405 ----~~~~~i~v~f~~~~p~~~~e~~~~~~kl~giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~ 480 (492) T protein:vir:94 405 ----GEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADSA 480 (492) T ss_pred ----cccceeeEEecCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCC Confidence 3567899999999999999999999999999999999999999999999999999998765543322221 111 1 Q ss_pred CcCCC Q lcl|Aclame:pro 475 VIDET 479 (479) Q Consensus 475 ~~det 479 (479) .+++. T Consensus 481 ~~~~~ 485 (492) T protein:vir:94 481 QQQER 485 (492) T ss_pred ccccC Confidence 11111 No 8 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=100.00 E-value=3.4e-93 Score=527.52 Aligned_cols=458 Identities=35% Similarity=0.636 Sum_probs=384.4 Q ss_pred CCCcccCcHHHHHH----HHhccChHHHHHHHHHHHHHh--hHHHHHHHHHHhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIYISETDLIKV----QLKKESTINLVKVIEHYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |.++--+|.+.-+. ...........+.|.+++.+| ++.+++++.+||+|+|++++++.... ........+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~--~~~~~~~~~~~ 78 (474) T protein:vir:96 1 MINIIRMPWDKPYGEEVVEQMKPKVETQEEMIIRLINNHKQKLKDINVGQKYYDKDNDINYQAYKQD--LHGNIDYTKPD 78 (474) T ss_pred CcccccCCCCCCCCcchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchhh--hcccccccccc Confidence 88876555433211 111222223344444444443 46789999999999999998765422 22333456788 Q ss_pred ceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIP 154 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~ 154 (479) +|+++||++.||++.++||+|+|++++++++...+.++.|++|+++..+.++++.+++||++|+++|+|++|.+++++++ T Consensus 79 ~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~~~~l~~~~~n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~i~~~~ 158 (474) T protein:vir:96 79 WRITTNFHQNLVDQKVSYVAGKPVTYAHDDDKVLDVIHQVLDTRWDNKLIDILTAASNKGIDWLQVYINEDGELKLFRVP 158 (474) T ss_pred cccccchHHHHHHhhhhhhcccCceeccCChHHHHHHHHHHhccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceEEEEEc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 155 AEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKE 234 (479) Q Consensus 155 p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (479) |++++|+||+....++++++|+|... ...++++|+++++++|+..+++..... .....+......+ T Consensus 159 p~~~~~v~d~~~~~~~~a~ir~~~~~-----~~~~~~vy~~~~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 224 (474) T protein:vir:96 159 AEQAIPIWTDKEREQLNAFIRIFTFN-----GETKVEYWTAETVTYYVYENGGLIPDF---------YYGDEHIQTHFST 224 (474) T ss_pred ccceEEEEcCCCCCceEEEEEEEeec-----CeeEEEEEeCCeEEEEEEcCCceeecc---------ccccccccCcccc Confidence 99999999998888999999998743 235789999999999998776543221 1223344556788 Q ss_pred ccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCc Q lcl|Aclame:pro 235 QGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGG 314 (479) Q Consensus 235 ~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (479) |+||.||||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|+.+.+..++...++..+++.++++++ T Consensus 225 ~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 304 (474) T protein:vir:96 225 GSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEGEDLSEFMEGLKYYKAINVSSDGG 304 (474) T ss_pred cCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCcccccchhhhhhccceeeccCCCc Confidence 99999999999999999999999999999999999999999999999999999998888888888888899999999999 Q ss_pred ceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 VDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYL 393 (479) Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~ 393 (479) ++|++++.+.+++++++++|++.|+.+|++|+++++.+ |++||+|++++++++.+||.++++.|+++|++++++|++++ T Consensus 305 ~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~ 384 (474) T protein:vir:96 305 VETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTDKFGSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFN 384 (474) T ss_pred eeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999999999999999999999999999988776 57999999999999999999999999999999999999876 Q ss_pred HhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCC-- Q lcl|Aclame:pro 394 KISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNN-- 471 (479) Q Consensus 394 ~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~-- 471 (479) +. ..+..+++++|++++|.|.++.++++++ +|++|+||+++++|+++|+++|++||++|+++..+..+..... T Consensus 385 g~----~~d~~~i~i~f~~~~p~~~~e~a~~~~~-~giiS~et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~ 459 (474) T protein:vir:96 385 KI----KLDAKEIEITFNFNVMVNDLEQSQIGAQ-SQYLSKETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLDDGGA 459 (474) T ss_pred CC----CcccceeeEEecCCCccCHHHHHHHHHH-cCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccC Confidence 53 4567889999999999999999999877 5999999999999999999999999999987655443322211 Q ss_pred ----CCCCcCCC Q lcl|Aclame:pro 472 ----QDGVIDET 479 (479) Q Consensus 472 ----~~~~~det 479 (479) +.+..+.+ T Consensus 460 ~~~~~~~~~~~~ 471 (474) T protein:vir:96 460 DGAQQQQQSENN 471 (474) T ss_pred CCCCCcCCCCcc Confidence 11111112 No 9 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=100.00 E-value=3.4e-93 Score=527.52 Aligned_cols=458 Identities=35% Similarity=0.636 Sum_probs=384.4 Q ss_pred CCCcccCcHHHHHH----HHhccChHHHHHHHHHHHHHh--hHHHHHHHHHHhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIYISETDLIKV----QLKKESTINLVKVIEHYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |.++--+|.+.-+. ...........+.|.+++.+| ++.+++++.+||+|+|++++++.... ........+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~--~~~~~~~~~~~ 78 (474) T protein:vir:95 1 MINIIRMPWDKPYGEEVVEQMKPKVETQEEMIIRLINNHKQKLKDINVGQKYYDKDNDINYQAYKQD--LHGNIDYTKPD 78 (474) T ss_pred CcccccCCCCCCCCcchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchhh--hcccccccccc Confidence 88876555433211 111222223344444444443 46789999999999999998765422 22333456788 Q ss_pred ceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIP 154 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~ 154 (479) +|+++||++.||++.++||+|+|++++++++...+.++.|++|+++..+.++++.+++||++|+++|+|++|.+++++++ T Consensus 79 ~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~~~~l~~~~~n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~i~~~~ 158 (474) T protein:vir:95 79 WRITTNFHQNLVDQKVSYVAGKPVTYAHDDDKVLDVIHQVLDTRWDNKLIDILTAASNKGIDWLQVYINEDGELKLFRVP 158 (474) T ss_pred cccccchHHHHHHhhhhhhcccCceeccCChHHHHHHHHHHhccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceEEEEEc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 155 AEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKE 234 (479) Q Consensus 155 p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (479) |++++|+||+....++++++|+|... ...++++|+++++++|+..+++..... .....+......+ T Consensus 159 p~~~~~v~d~~~~~~~~a~ir~~~~~-----~~~~~~vy~~~~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 224 (474) T protein:vir:95 159 AEQAIPIWTDKEREQLNAFIRIFTFN-----GETKVEYWTAETVTYYVYENGGLIPDF---------YYGDEHIQTHFST 224 (474) T ss_pred ccceEEEEcCCCCCceEEEEEEEeec-----CeeEEEEEeCCeEEEEEEcCCceeecc---------ccccccccCcccc Confidence 99999999998888999999998743 235789999999999998776543221 1223344556788 Q ss_pred ccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCc Q lcl|Aclame:pro 235 QGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGG 314 (479) Q Consensus 235 ~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (479) |+||.||||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|+.+.+..++...++..+++.++++++ T Consensus 225 ~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 304 (474) T protein:vir:95 225 GSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEGEDLSEFMEGLKYYKAINVSSDGG 304 (474) T ss_pred cCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCcccccchhhhhhccceeeccCCCc Confidence 99999999999999999999999999999999999999999999999999999998888888888888899999999999 Q ss_pred ceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 VDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYL 393 (479) Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~ 393 (479) ++|++++.+.+++++++++|++.|+.+|++|+++++.+ |++||+|++++++++.+||.++++.|+++|++++++|++++ T Consensus 305 ~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~ 384 (474) T protein:vir:95 305 VETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTDKFGSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFN 384 (474) T ss_pred eeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999999999999999999999999999988776 57999999999999999999999999999999999999876 Q ss_pred HhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCC-- Q lcl|Aclame:pro 394 KISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNN-- 471 (479) Q Consensus 394 ~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~-- 471 (479) +. ..+..+++++|++++|.|.++.++++++ +|++|+||+++++|+++|+++|++||++|+++..+..+..... T Consensus 385 g~----~~d~~~i~i~f~~~~p~~~~e~a~~~~~-~giiS~et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~ 459 (474) T protein:vir:95 385 KI----KLDAKEIEITFNFNVMVNDLEQSQIGAQ-SQYLSKETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLDDGGA 459 (474) T ss_pred CC----CcccceeeEEecCCCccCHHHHHHHHHH-cCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccC Confidence 53 4567889999999999999999999877 5999999999999999999999999999987655443322211 Q ss_pred ----CCCCcCCC Q lcl|Aclame:pro 472 ----QDGVIDET 479 (479) Q Consensus 472 ----~~~~~det 479 (479) +.+..+.+ T Consensus 460 ~~~~~~~~~~~~ 471 (474) T protein:vir:95 460 DGAQQQQQSENN 471 (474) T ss_pred CCCCCcCCCCcc Confidence 11111112 No 10 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=100.00 E-value=2.8e-92 Score=522.49 Aligned_cols=453 Identities=20% Similarity=0.277 Sum_probs=371.4 Q ss_pred CCCc-ccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeec Q lcl|Aclame:pro 1 MLNI-YISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAIN 79 (479) Q Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~ 79 (479) +.|. |.+....-. .......+.++|++|+.. +.+||+++.+||+|+|++++++... ....++++|+++ T Consensus 24 ~~~~~~~~~~~e~~---~~~~~~~i~~~i~~~~~~-~~~r~~~l~~YY~g~~~i~~~~~~~-------~~~~~~~~ki~~ 92 (512) T protein:vir:97 24 EANVVYTYDGTESD---LLQNINEVSKYIEHHMDY-QRPRLKVLSDYYEGKTKNLVELTRR-------KEEYMADNRVAH 92 (512) T ss_pred ccccccccCchhhh---hhhhHHHHHHHHHHHHHh-hHHHHHHHHHHhcccCccccccCcc-------cccccCcceeec Confidence 3332 232211110 011224455666655544 4568999999999999998765432 234567899999 Q ss_pred chHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEcccee Q lcl|Aclame:pro 80 NYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEA 158 (479) Q Consensus 80 n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~ 158 (479) ||++.||++.++|++|+|+++++++++.++.++.|+ .|+|+..+.++++.+++||++|++||.|++|.+++++++|+++ T Consensus 93 n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~ded~~~~i~~~~p~~~ 172 (512) T protein:vir:97 93 DYASYISDFINGYFLGNPIQCQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMST 172 (512) T ss_pred chHHHHHHHHhhhhcccCceeccCChHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccce Confidence 999999999999999999999999999988888775 5899999999999999999999999999999999999999999 Q ss_pred EEEEcCCCCCceEEEEEEEeeecccC---ceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccc Q lcl|Aclame:pro 159 IPIWDSKRQRELVAFIRFYYIEDIDG---NKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQ 235 (479) Q Consensus 159 ~~~~d~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (479) +++||+....++++++|+|.....++ +.+.++++|+++.+++|...++.... .........+| T Consensus 173 ~~iyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~--------------~~~~~~~~~~~ 238 (512) T protein:vir:97 173 FVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLK--------------LTPRENGFESH 238 (512) T ss_pred EEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccc--------------ccccccccccc Confidence 99999988888999999998765554 45778999999999999877654322 12234567899 Q ss_pred cccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccce-------- Q lcl|Aclame:pro 236 GWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSI-------- 307 (479) Q Consensus 236 ~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~-------- 307 (479) +||.||||+|.|++.|+|+|+++++|||+||.++|++++.++++++|++++.|..+.+..+.... .....+ T Consensus 239 ~~g~vPvv~~~nn~~~~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~ 317 (512) T protein:vir:97 239 SFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQ-KEANVLFLEPTVYE 317 (512) T ss_pred cCcccceEeecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCchhhhhh-hhcccccccccchh Confidence 99999999999999999999999999999999999999999999999999999766554443221 111111 Q ss_pred ------ecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 308 ------KVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKK 380 (479) Q Consensus 308 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~ 380 (479) ..+++++++|++++.+.+++++++++|++.|+.+|++|+++++.+ ||+||+||+++++++.+|+..+++.|++ T Consensus 318 ~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~~l~~ka~~k~~~f~~ 397 (512) T protein:vir:97 318 NRDTGIETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTK 397 (512) T ss_pred hcccccCCCCCcceEEEeecCCHHHHHHHHHHHHHHHHHHhCCcccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHH Confidence 235678899999999999999999999999999999999998876 7899999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHhcCCC--ccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 381 AIRELLWFVCEYLKISGNK--SYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQE 458 (479) Q Consensus 381 ~l~~~~~li~~~~~~~~~~--~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~ 458 (479) +|++++++|+++++..+.. ..+..+++++|++++|+|.++.++++++++|++|+||+++++|+++|+++|++||++|+ T Consensus 398 ~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~~~~e~~~~~~kl~giiS~et~~~~l~~v~d~~~E~eri~~E~ 477 (512) T protein:vir:97 398 GLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDPELEVKKIEEDE 477 (512) T ss_pred HHHHHHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHH Confidence 9999999999998876643 45567899999999999999999999999999999999999999999999999999998 Q ss_pred HHHHhhhhccCC------CCCCCcCCC Q lcl|Aclame:pro 459 DTQKEYDDLIPN------NQDGVIDET 479 (479) Q Consensus 459 ~~~~~~~~~~~~------~~~~~~det 479 (479) ++..+..+.... .+++..++| T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (512) T protein:vir:97 478 KESIKKAQKGIYKDPRDINDDEQDDDT 504 (512) T ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCc Confidence 876544433222 111222222 No 11 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=100.00 E-value=2.4e-92 Score=522.86 Aligned_cols=456 Identities=35% Similarity=0.652 Sum_probs=385.8 Q ss_pred CCCcccCcHH-----HHHHHHhc---cChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccccccccccccccccc Q lcl|Aclame:pro 1 MLNIYISETD-----LIKVQLKK---ESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTK 72 (479) Q Consensus 1 ~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (479) |.|...|+-+ .+...+.. .....|.++|.+|. .+.+||+++.+||+|+|++++++...... ...+..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~--~~~~~~~~~~~YY~g~~~i~~~~~~~~~~--~~~~~~~ 76 (474) T protein:vir:94 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIVRLIDDHR--KQLDKITVGQRYYDKDNDIVKQMKKVDVH--GNIDYDK 76 (474) T ss_pred CcccccccCCCchhhHHHHhhhhcccCHHHHHHHHHHHHH--HHHHHHHHHHHHhccccchhcccchhccc--ccccccc Confidence 8888766643 22223322 22334444444432 25678999999999999998876544332 2345667 Q ss_pred CcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEE Q lcl|Aclame:pro 73 VNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVI 152 (479) Q Consensus 73 ~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~ 152 (479) +++|+++||++.||++.++||+|+|++++++++..++.++.|++|+|+..+.++++.+++||.+|+++|+|++|.+++.+ T Consensus 77 ~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~~n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i~~ 156 (474) T protein:vir:94 77 PDWRITTNFHQNLVDQKVSYVASKPVTYSCEDENVLKVIHDVLDTRWDNKLIDILTATSNKGIDWLQVYINENGEMKLFR 156 (474) T ss_pred CcceeecchHHHHHHHHHhhhhcCCceeccCcHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEecCCCeeEEEE Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccc Q lcl|Aclame:pro 153 IPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINN 232 (479) Q Consensus 153 ~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479) ++|++++|+||+....++++++|+|...+ ..++++|+++.+++|+..++....... ....+..... T Consensus 157 ~~p~~~~~v~d~~~~~~~~~~ir~~~~~~-----~~~~~~yt~~~~~~y~~~~~~~~~~~~---------~~~~~~~~~~ 222 (474) T protein:vir:94 157 VPAEQAIPIWVDKEREELKSFIRYYKFNN-----EEKVEFWTDTTVTYYVLENGGLIPDYY---------YGANHVQSHF 222 (474) T ss_pred EcccceEEEEcCCCCCceEEEEEEEEecC-----eEEEEEEeCCeEEEEEEcCCccccccc---------cCcCcccccc Confidence 99999999999988889999999987532 247899999999999987765543321 1222334567 Q ss_pred ccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCC Q lcl|Aclame:pro 233 KEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGG 312 (479) Q Consensus 233 ~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (479) .+|+||+||||+|+|++.|+|+|++++++||+||.++|++++.++++++|+++++|+.+++.+++..+++..+++.++++ T Consensus 223 ~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~ 302 (474) T protein:vir:94 223 SNGNWGRVPFIAFKNNPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYEGEDLEEFMRGLKYYKAINVDGD 302 (474) T ss_pred cccCCCccceEEecCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhhhhhhhccceeeccCC Confidence 78999999999999999999999999999999999999999999999999999999998888888888889999999999 Q ss_pred CcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 313 GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCE 391 (479) Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 391 (479) ++++|++++++.++++++++++++.|+.+|++|+++++.+ ||+||+|++++++++.+||.++++.|+++|++++++|++ T Consensus 303 ~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~ 382 (474) T protein:vir:94 303 GGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIID 382 (474) T ss_pred CceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999999999999999999999999999999999988765 789999999999999999999999999999999999998 Q ss_pred HHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCC Q lcl|Aclame:pro 392 YLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNN 471 (479) Q Consensus 392 ~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~ 471 (479) +++. ..+..+++|+|++++|.|.++.|++++++ |++|+||+++++|+++|+++|++||++|+++........... T Consensus 383 ~~~~----~~d~~~i~v~f~~~~p~~~~e~a~~~~~~-g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~ 457 (474) T protein:vir:94 383 FNNL----KTDVKDIEISFNFNRMMNDAEQSQIIAQS-QYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDG 457 (474) T ss_pred HhCC----CcccceeeEEeccCcccCHHHHHHHHHHc-CCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCC Confidence 8654 34667899999999999999999999885 899999999999999999999999999997655443222211 Q ss_pred -CC-CCcCCC Q lcl|Aclame:pro 472 -QD-GVIDET 479 (479) Q Consensus 472 -~~-~~~det 479 (479) .+ +.++|. T Consensus 458 ~~~~~~~~~~ 467 (474) T protein:vir:94 458 GADGAQQQEG 467 (474) T ss_pred CCCCcccCCC Confidence 11 111111 No 12 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=100.00 E-value=2.4e-92 Score=522.86 Aligned_cols=456 Identities=35% Similarity=0.652 Sum_probs=385.8 Q ss_pred CCCcccCcHH-----HHHHHHhc---cChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccccccccccccccccc Q lcl|Aclame:pro 1 MLNIYISETD-----LIKVQLKK---ESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTK 72 (479) Q Consensus 1 ~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (479) |.|...|+-+ .+...+.. .....|.++|.+|. .+.+||+++.+||+|+|++++++...... ...+..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~--~~~~~~~~~~~YY~g~~~i~~~~~~~~~~--~~~~~~~ 76 (474) T protein:vir:97 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIVRLIDDHR--KQLDKITVGQRYYDKDNDIVKQMKKVDVH--GNIDYDK 76 (474) T ss_pred CcccccccCCCchhhHHHHhhhhcccCHHHHHHHHHHHHH--HHHHHHHHHHHHhccccchhcccchhccc--ccccccc Confidence 8888766643 22223322 22334444444432 25678999999999999998876544332 2345667 Q ss_pred CcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEE Q lcl|Aclame:pro 73 VNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVI 152 (479) Q Consensus 73 ~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~ 152 (479) +++|+++||++.||++.++||+|+|++++++++..++.++.|++|+|+..+.++++.+++||.+|+++|+|++|.+++.+ T Consensus 77 ~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~~n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i~~ 156 (474) T protein:vir:97 77 PDWRITTNFHQNLVDQKVSYVASKPVTYSCEDENVLKVIHDVLDTRWDNKLIDILTATSNKGIDWLQVYINENGEMKLFR 156 (474) T ss_pred CcceeecchHHHHHHHHHhhhhcCCceeccCcHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEecCCCeeEEEE Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccc Q lcl|Aclame:pro 153 IPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINN 232 (479) Q Consensus 153 ~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479) ++|++++|+||+....++++++|+|...+ ..++++|+++.+++|+..++....... ....+..... T Consensus 157 ~~p~~~~~v~d~~~~~~~~~~ir~~~~~~-----~~~~~~yt~~~~~~y~~~~~~~~~~~~---------~~~~~~~~~~ 222 (474) T protein:vir:97 157 VPAEQAIPIWVDKEREELKSFIRYYKFNN-----EEKVEFWTDTTVTYYVLENGGLIPDYY---------YGANHVQSHF 222 (474) T ss_pred EcccceEEEEcCCCCCceEEEEEEEEecC-----eEEEEEEeCCeEEEEEEcCCccccccc---------cCcCcccccc Confidence 99999999999988889999999987532 247899999999999987765543321 1222334567 Q ss_pred ccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCC Q lcl|Aclame:pro 233 KEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGG 312 (479) Q Consensus 233 ~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (479) .+|+||+||||+|+|++.|+|+|++++++||+||.++|++++.++++++|+++++|+.+++.+++..+++..+++.++++ T Consensus 223 ~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~ 302 (474) T protein:vir:97 223 SNGNWGRVPFIAFKNNPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYEGEDLEEFMRGLKYYKAINVDGD 302 (474) T ss_pred cccCCCccceEEecCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhhhhhhhccceeeccCC Confidence 78999999999999999999999999999999999999999999999999999999998888888888889999999999 Q ss_pred CcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 313 GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCE 391 (479) Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 391 (479) ++++|++++++.++++++++++++.|+.+|++|+++++.+ ||+||+|++++++++.+||.++++.|+++|++++++|++ T Consensus 303 ~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~ 382 (474) T protein:vir:97 303 GGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIID 382 (474) T ss_pred CceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999999999999999999999999999999999988765 789999999999999999999999999999999999998 Q ss_pred HHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCC Q lcl|Aclame:pro 392 YLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNN 471 (479) Q Consensus 392 ~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~ 471 (479) +++. ..+..+++|+|++++|.|.++.|++++++ |++|+||+++++|+++|+++|++||++|+++........... T Consensus 383 ~~~~----~~d~~~i~v~f~~~~p~~~~e~a~~~~~~-g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~ 457 (474) T protein:vir:97 383 FNNL----KTDVKDIEISFNFNRMMNDAEQSQIIAQS-QYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDG 457 (474) T ss_pred HhCC----CcccceeeEEeccCcccCHHHHHHHHHHc-CCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCC Confidence 8654 34667899999999999999999999885 899999999999999999999999999997655443222211 Q ss_pred -CC-CCcCCC Q lcl|Aclame:pro 472 -QD-GVIDET 479 (479) Q Consensus 472 -~~-~~~det 479 (479) .+ +.++|. T Consensus 458 ~~~~~~~~~~ 467 (474) T protein:vir:97 458 GADGAQQQEG 467 (474) T ss_pred CCCCcccCCC Confidence 11 111111 No 13 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=100.00 E-value=3.1e-92 Score=522.27 Aligned_cols=461 Identities=39% Similarity=0.694 Sum_probs=384.7 Q ss_pred CCCc-c-cCc--HHHHHHHHhccChHHHHHHHHHHHHHh--hHHHHHHHHHHhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNI-Y-ISE--TDLIKVQLKKESTINLVKVIEHYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |+.+ | +.+ ...+ ............+.|.+++.+| +..|++++.+||+|+|++++++..... .......+++ T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~~~~~~~~--~~~~~~~~~~ 77 (474) T protein:vir:96 1 MIVIFWPNEKPYHERV-VEQIKPKYETQEEMIIRLINDHKPKIDDITVGERYYNHDPDVLRLAPKLDN--KGEIDPLKPD 77 (474) T ss_pred CeeeccCCCchhhhhH-HHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhccchhcc--cccccccccc Confidence 9998 5 333 2222 1112222333344444444433 577999999999999999988755432 2334556799 Q ss_pred ceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIP 154 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~ 154 (479) +|+++||++.||++.++||||+|+++++++++..+.++.|++|+++..+.++++.++++|++|+++|+|++|++++.+++ T Consensus 78 ~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~~i~~~~ 157 (474) T protein:vir:96 78 WRMFTNYHQNLVDQKVAYAVANPVTFSSDDDKSLKTIQEVLNHKWDDKLVDILTAASNKGIEWLQPYIDENGEFKTFRVP 157 (474) T ss_pred hhcccchHHHHHHhhhhhhcccCceeecCchHHHHHHHHHHhcCHHHHHHHHHHHHHhcCeeEEEEEecCCCceEEEEEc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 155 AEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKE 234 (479) Q Consensus 155 p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (479) |++++|+||+....++.+++++|.... ..++++|+++++++|...++.......... ............+ T Consensus 158 p~~~~~v~d~~~~~~~~~~vr~~~~~~-----~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 227 (474) T protein:vir:96 158 AEQAIPIWTNKERDTLKAFIRYYRLDG-----AERVEYWTDSDVTYYEYQDGILIPDYYHGE-----EHIQSHYYVGNKR 227 (474) T ss_pred ccceEEEEcCCCCCceEEEEEEEeecC-----ceEEEEEeCCeEEEEEecCCceeecccccc-----ccccccccccccc Confidence 999999999988888999999997532 336899999999999987766544332211 1122334456789 Q ss_pred ccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCC-CC Q lcl|Aclame:pro 235 QGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDG-GG 313 (479) Q Consensus 235 ~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~ 313 (479) |+||+||||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|+.+++..++..++..++++.+++ ++ T Consensus 228 ~~~g~iPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (474) T protein:vir:96 228 VSWGRVPFIPFKNNPQEMSDLFMYKTIIDAMDKRLSDTQNTFDESTELIYILKGYEGQDLDEFMRNLKYYKAINVDGDGS 307 (474) T ss_pred cCCCceeEEEeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccccchhhhhhcCceEEecCCCC Confidence 99999999999999999999999999999999999999999999999999999999888888888888889998875 57 Q ss_pred cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEY 392 (479) Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~ 392 (479) +++|++++++.++++.++++++++|+.+|++|+++++.+ ||+||+|++++++++.+||..+++.|+++|++++++|+.+ T Consensus 308 ~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~ 387 (474) T protein:vir:96 308 GVDTIQIEVPVQSSKEYLDMLRDYVIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDF 387 (474) T ss_pred ceeEEeecCChHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 899999999999999999999999999999999998876 5899999999999999999999999999999999999988 Q ss_pred HHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCC Q lcl|Aclame:pro 393 LKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQ 472 (479) Q Consensus 393 ~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~ 472 (479) ++ .+.+..+++|+|++++|.|.++.++++.+ +|++|+||+++++|+++|+++|++||++|+++..+.......+. T Consensus 388 ~~----~~~~~~~i~i~f~~~~p~~~~e~~~~~~~-ag~iS~et~~~~~~~v~d~~~E~~ri~~E~~e~~~~~~~~~~~~ 462 (474) T protein:vir:96 388 YK----LNIKVQDVEITFNFNVMVNELEQSQIGVQ-SQYLSKETVVTNHPWVDDPVAELERIEQDNIDFNKQLPPLEGDA 462 (474) T ss_pred hC----CCcccceeeEEeccCCCcCHHHHHHHHHh-cCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhccccccccc Confidence 64 34567789999999999999999998765 69999999999999999999999999999876555443333322 Q ss_pred C-C---CcCCC Q lcl|Aclame:pro 473 D-G---VIDET 479 (479) Q Consensus 473 ~-~---~~det 479 (479) + + ...|| T Consensus 463 ~~~~~d~~~e~ 473 (474) T protein:vir:96 463 NGRAQDNESET 473 (474) T ss_pred ccccCCCcccC Confidence 2 2 22233 No 14 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=100.00 E-value=7.8e-92 Score=520.06 Aligned_cols=453 Identities=21% Similarity=0.282 Sum_probs=369.6 Q ss_pred CCCc------------------------ccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccc Q lcl|Aclame:pro 1 MLNI------------------------YISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNK 56 (479) Q Consensus 1 ~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~ 56 (479) |+.+ |.++...-. ...+...+.++|++|... +.+||+++++||+|+|+++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~---~~~~~~~i~~~i~~~~~~-~~~r~~~l~~Yy~g~~~il~~ 76 (511) T protein:vir:93 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESD---LLQNVNEVSKYIEHHMDY-QRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCcccccchhhh---hhccHHHHHHHHHHHHHh-hHHHHHHHHHHhcccCccccc Confidence 3221 111111110 111233455555555443 456899999999999999876 Q ss_pred ccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCe Q lcl|Aclame:pro 57 RRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGV 135 (479) Q Consensus 57 ~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~ 135 (479) +... ....++++|+++||++.||++.++||+|+|+++++++++.++.++.|+ .|+|+..+.++++.+++||+ T Consensus 77 ~~~~-------~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~ 149 (511) T protein:vir:93 77 LTRR-------KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEVIEAFNDLNDVESHNRSLGLDLSIYGK 149 (511) T ss_pred cCcC-------cccccCcceeecchHHHHHHHHhhhhcccCeeeccCChHHHHHHHHHHhhcCHhHHHHHHHHHHHhcCe Confidence 5433 233467889999999999999999999999999999999988888765 58999999999999999999 Q ss_pred EEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccC---ceEEEEEEEeCCcEEEEEEcCCcccccc Q lcl|Aclame:pro 136 EWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDG---NKIKRVEYYTENDITYFIERGNSFIQEF 212 (479) Q Consensus 136 ~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~y~~~~i~~~~~~~~~~~~~~ 212 (479) +|++||.|++|.+++++++|++++|+||+....++++++|+|.....++ +.+.++++|+++.+++|...++.... T Consensus 150 ay~~vy~de~~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~-- 227 (511) T protein:vir:93 150 AYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLK-- 227 (511) T ss_pred eEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccc-- Confidence 9999999999999999999999999999988888999999998765443 45778999999999999877654322 Q ss_pred ccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcc Q lcl|Aclame:pro 213 LYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGT 292 (479) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~ 292 (479) .........+|+||.||||+|.|++.|+|+|+++++|||+||.++|++++.++++++|+++++|..+. T Consensus 228 ------------~~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~ 295 (511) T protein:vir:93 228 ------------LTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNL 295 (511) T ss_pred ------------cccccccccccCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCccc Confidence 12234567799999999999999999999999999999999999999999999999999999997765 Q ss_pred chhhHHHHhhcccc-------------eecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHH Q lcl|Aclame:pro 293 SLQEFIDNIRYYKS-------------IKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGV 358 (479) Q Consensus 293 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~ 358 (479) +..+... .....+ ....++++++|++++.+.++++.++++|.+.|+.+|++|+++++.+ ||+||+ T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~ 374 (511) T protein:vir:93 296 DPVEVRK-QKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGE 374 (511) T ss_pred Cchhhcc-cccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHH Confidence 5444322 111211 1245678899999999999999999999999999999999998775 789999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHH Q lcl|Aclame:pro 359 ALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNK--SYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDET 436 (479) Q Consensus 359 Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~--~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et 436 (479) ||+++++++.+||.++++.|+++|++++++|+++++..+.. ..+..+++++|++++|.|.++.++++++++|++|+|| T Consensus 375 Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl~g~iS~et 454 (511) T protein:vir:93 375 AMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTT 454 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccceEEeCCCCCCCHHHHHHHHHHHhccCchHH Confidence 99999999999999999999999999999999998876543 4556789999999999999999999999999999999 Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCC------CCCCCcCCC Q lcl|Aclame:pro 437 IVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPN------NQDGVIDET 479 (479) Q Consensus 437 ~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~------~~~~~~det 479 (479) +++++|+++|+++|++||++|++++.+..+.... ++++..+++ T Consensus 455 ~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (511) T protein:vir:93 455 LMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDT 503 (511) T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcc Confidence 9999999999999999999998876554332221 111122222 No 15 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=100.00 E-value=7.2e-92 Score=520.26 Aligned_cols=461 Identities=36% Similarity=0.653 Sum_probs=385.5 Q ss_pred CCCc-c-cCc--HHH-HHHHH--hccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccC Q lcl|Aclame:pro 1 MLNI-Y-ISE--TDL-IKVQL--KKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKV 73 (479) Q Consensus 1 ~~~~-~-~~~--~~~-~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~ 73 (479) |+.+ | ++. ..+ +.... .......|.++++++. .+.+|++++.+||+|+|++++++.... ........++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~--~~~~r~~~~~~Yy~g~~~i~~~~~~~~--~~~~~~~~~~ 76 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVREHK--ENIDNITMGERYYNHHPDILDAPFKRD--VNGDYDETKP 76 (478) T ss_pred CccccccCCchhhhHHHHHhhhccCChHHHHHHHHHHHH--HHHHHHHHHHHHhcccccccccchhhh--cccccccccc Confidence 9988 5 333 222 32322 2234445555555543 356789999999999999988765432 2334456688 Q ss_pred cceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEE Q lcl|Aclame:pro 74 NNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVII 153 (479) Q Consensus 74 ~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~ 153 (479) ++|+++||++.||++.++||||+||++++++++..+.++.|++|+++..+.++++.+++||++|++||.|++|+++++++ T Consensus 77 ~~ki~~n~~k~ivd~~~~yl~g~p~~~~~~~~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~~~~~ 156 (478) T protein:vir:10 77 DWRMYTNYHQNLVDQKVAYAVANPVTFGVDNDKALKQIQHTLNHKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFRV 156 (478) T ss_pred cceeccchHHHHHHHHhhhhcccCceeecCChHHHHHHHHHHhccHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 154 PAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNK 233 (479) Q Consensus 154 ~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479) +|.+++|+|++....++.+++|+|...+ ..++++|+++++++|+..++...... ........++...... T Consensus 157 ~p~~~~~v~d~~~~~~~~~~ir~~~~~~-----~~~~~~y~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 226 (478) T protein:vir:10 157 PAEQAVPIWTNKERDELQAFIRVYELDG-----AERVEYWTKDDVTFYELKEGQLIPDF-----YRSEDHIQPHYYQGNK 226 (478) T ss_pred cccceEEEEcCCCCCceEEEEEEEeeeC-----ceEEEEEeCCcEEEEEecCCeeeccc-----cccccccccceecccc Confidence 9999999999988888999999987543 24789999999999988776543321 1122233344566778 Q ss_pred cccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecC--C Q lcl|Aclame:pro 234 EQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVD--G 311 (479) Q Consensus 234 ~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~--~ 311 (479) +|+||+||||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|+++.+..++...++..+++.++ + T Consensus 227 ~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (478) T protein:vir:10 227 LMSWGRVPFIPFKNNPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGEDMKDFMHNLKYYKAISVAGES 306 (478) T ss_pred cccCCcceEEEeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCCcccccchhhhhhhCceeEecCCC Confidence 99999999999999999999999999999999999999999999999999999999888877877778877777664 5 Q ss_pred CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVC 390 (479) Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 390 (479) +++++|++++++.++++++++++++.|+.+|++|+++++.+ ||+||+||+++++++.+||..+++.|+++|++++++|+ T Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 386 (478) T protein:vir:10 307 GSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYII 386 (478) T ss_pred CCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCcCcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 68899999999999999999999999999999999988876 68999999999999999999999999999999999999 Q ss_pred HHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCC Q lcl|Aclame:pro 391 EYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPN 470 (479) Q Consensus 391 ~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~ 470 (479) ++++ .+.+..+++|+|++++|.|.++.++++++++|++|+||+++++|+++|+++|++||++|+++.........+ T Consensus 387 ~~~~----~~~d~~~i~i~f~~~~p~~~~e~~~~~~~~~g~iS~et~i~~~~~v~d~~~E~~ri~~E~~~~~~~~~~~~~ 462 (478) T protein:vir:10 387 DFYR----LDVRVQDIEITFNFNVMVNELENSQIAMNSTGLLSKETILGNHSWVQDPVAEMERIEQENIELNQQLPDIEE 462 (478) T ss_pred HHhC----CCcccccceEEeCCCCCCCHHHHHHHHHHHhCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccccCC Confidence 8865 346677899999999999999999999999999999999999999999999999999998875544332221 Q ss_pred -CCCC-----CcCCC Q lcl|Aclame:pro 471 -NQDG-----VIDET 479 (479) Q Consensus 471 -~~~~-----~~det 479 (479) ..++ ..++. T Consensus 463 ~~~d~~~~~~~d~~~ 477 (478) T protein:vir:10 463 GLNDEQQRQSEDNQS 477 (478) T ss_pred CCcccccccCcCCCC Confidence 1111 11111 No 16 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=100.00 E-value=1.3e-91 Score=518.85 Aligned_cols=456 Identities=20% Similarity=0.282 Sum_probs=368.8 Q ss_pred CCCcc--cCc---------------HHHHHHHHhcc----ChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccc Q lcl|Aclame:pro 1 MLNIY--ISE---------------TDLIKVQLKKE----STINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRY 59 (479) Q Consensus 1 ~~~~~--~~~---------------~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~ 59 (479) |+.+= ... +..+.+..... +...|.+.|++|... +.+||+++.+||+|+|++++++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~r~~~l~~Yy~g~~~i~~~~~~ 79 (511) T protein:vir:10 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKCIEHHMDY-QRPRLKVLSDYYEGKTKNLVELTR 79 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhcCCccCchhhhhcccCHHHHHHHHHHHHHh-hHHHHHHHHHHhcccCccccccCc Confidence 32221 110 11111111112 223344555444333 456899999999999999876543 Q ss_pred cccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEE Q lcl|Aclame:pro 60 YLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWL 138 (479) Q Consensus 60 ~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~ 138 (479) . ....++++|+++||++.||++.++||+|+|+++++++++.++.++.|+ .|+|+..+.++++++++||++|+ T Consensus 80 ~-------~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~ 152 (511) T protein:vir:10 80 R-------KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYE 152 (511) T ss_pred c-------cccccCcceeecchHHHHHHHHhhhhcccCceeecCchHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEE Confidence 2 334567889999999999999999999999999999998888888765 68999999999999999999999 Q ss_pred EEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccC---ceEEEEEEEeCCcEEEEEEcCCccccccccc Q lcl|Aclame:pro 139 HPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDG---NKIKRVEYYTENDITYFIERGNSFIQEFLYD 215 (479) Q Consensus 139 ~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~ 215 (479) ++|.|++|++++++++|++++|+||+....++++++|+|.....++ +.+.++++|+++.+++|...++++.. T Consensus 153 ~vy~dedg~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~----- 227 (511) T protein:vir:10 153 IMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLK----- 227 (511) T ss_pred EEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCCccc----- Confidence 9999999999999999999999999988888999999998765553 45678999999999999887654322 Q ss_pred cccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchh Q lcl|Aclame:pro 216 EYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQ 295 (479) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~ 295 (479) .........+|+||.||||+|+|++.|+|+|++++++||+||.++|++++.++++++|+++++|..+.+.. T Consensus 228 ---------~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~ 298 (511) T protein:vir:10 228 ---------LTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPV 298 (511) T ss_pred ---------ccccccccccccCcceeEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeeccccCCch Confidence 12334567899999999999999999999999999999999999999999999999999999997655544 Q ss_pred hHHHHhhcccce-------------ecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHH Q lcl|Aclame:pro 296 EFIDNIRYYKSI-------------KVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALK 361 (479) Q Consensus 296 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~ 361 (479) +.. ....+.++ ...++++++|++++.+.+++++++++|.+.|+.+|++|+++++.+ ||+||+||+ T Consensus 299 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~ 377 (511) T protein:vir:10 299 EVR-KQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMK 377 (511) T ss_pred hhc-cchhccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHH Confidence 332 22222222 234568899999999999999999999999999999999998775 789999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHH Q lcl|Aclame:pro 362 FLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGN--KSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVS 439 (479) Q Consensus 362 ~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~--~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~ 439 (479) ++++++.+|+.++++.|+++|++++++|+++++..+. ...+..+++++|++++|+|.++.++++++++|++|+||+++ T Consensus 378 ~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~~~~~~~~kl~G~iS~et~~~ 457 (511) T protein:vir:10 378 YKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMS 457 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccceeeEEeCCCCCcCHHHHHHHHHHHhccCcHHHHHH Confidence 9999999999999999999999999999999887654 34566789999999999999999999999999999999999 Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHhhhhccC--CCC----CCCcCCC Q lcl|Aclame:pro 440 NHPWVEDVNDELERLKKQEDTQKEYDDLIP--NNQ----DGVIDET 479 (479) Q Consensus 440 ~l~~~~d~~~El~~i~~E~~~~~~~~~~~~--~~~----~~~~det 479 (479) ++|+++|+++|++||++|+++..+...... ... ++..+++ T Consensus 458 ~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (511) T protein:vir:10 458 LFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDT 503 (511) T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcc Confidence 999999999999999999887654433221 111 1122222 No 17 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=100.00 E-value=5.5e-92 Score=520.90 Aligned_cols=456 Identities=39% Similarity=0.678 Sum_probs=381.6 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHh--hHHHHHHHHHHhccCCcccccccccccccccccccccCcceee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 78 (479) |-++-.+=++.+....... .+.++|.+++.++ ++.|++++.+||+|+|++++++...... ......++++|++ T Consensus 5 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~--~~~~~~~~~~ri~ 79 (472) T protein:vir:93 5 QPTQTEIFDAIVRTNNKPE---TLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDAT--GAVDPLKPDDRMI 79 (472) T ss_pred CCcchhhhhceeeecCchh---hHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhcc--ccccccccccccc Confidence 3232222233333333332 2334444444333 5578999999999999998876544332 2334567889999 Q ss_pred cchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEcccee Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEA 158 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~ 158 (479) +||++.||++.++||+|+|+++++++++..+.|+.|++|+++..+.++++.+++||++|++||.|++|++++++++|+++ T Consensus 80 ~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~d~~~~i~~~~p~~~ 159 (472) T protein:vir:93 80 TNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQG 159 (472) T ss_pred cchHHHHHHHHhhhhcccCeeeccCChHHHHHHHHHHhccHHHHHHHHHHHHhhcCeEEEEEEECCCCceEEEEEcccce Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 159 IPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWG 238 (479) Q Consensus 159 ~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 238 (479) +++||+...+++.+++|+|...+. .++++|+++.+++|+..++....... ...+.......+|+|| T Consensus 160 ~~i~d~~~~~~~~~~ir~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 225 (472) T protein:vir:93 160 IPIWTDKEHEELEAFIRMYKLENE-----TKVEYWDKVTVNYYVYENGSLIPDYS---------NNLENSKTHFSTGSWG 225 (472) T ss_pred EEEEcCCCCCceEEEEEEEEeecc-----eeEEEEecCeEEEEEEecCeeeeccc---------ccccccccccccCCCC Confidence 999998888899999999876433 26799999999999877655433211 1122344567889999 Q ss_pred ccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceee Q lcl|Aclame:pro 239 KVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKL 318 (479) Q Consensus 239 ~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (479) .||||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|.++....++...++..+++.++++++++|+ T Consensus 226 ~vPvv~~~nn~~g~s~~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (472) T protein:vir:93 226 KIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDDQELPEFKRLLRYYGAIKVSDNGGVDTI 305 (472) T ss_pred CcceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeEeecCCcccchhhHHHHhhccccccCCCCcceeE Confidence 99999999999999999999999999999999999999999999999999988877788888888889999999999999 Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 319 EINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG 397 (479) Q Consensus 319 ~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~ 397 (479) +++++.+++++++++|+++|+.+|++|+++++.+ ||+||+||++++.++..||.++++.|+++|++++++++++++.. T Consensus 306 ~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~- 384 (472) T protein:vir:93 306 QVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK- 384 (472) T ss_pred eecCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC- Confidence 9999999999999999999999999999998776 67999999999999999999999999999999999999987643 Q ss_pred CCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCC-CCC-CC Q lcl|Aclame:pro 398 NKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPN-NQD-GV 475 (479) Q Consensus 398 ~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~-~~~-~~ 475 (479) .+..+++|+|++++|+|.++.++++++++|++|+||+++++|+++|+++|++||++|+++.....+..+. ..+ +. T Consensus 385 ---~~~~~i~v~f~~~~p~~~~~~~~~~~k~~giis~et~l~~l~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~ 461 (472) T protein:vir:93 385 ---GEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADGAQ 461 (472) T ss_pred ---cccceeeEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccCcCcccCCCCC Confidence 3567899999999999999999999999999999999999999999999999999998765544433322 111 11 Q ss_pred cCCC Q lcl|Aclame:pro 476 IDET 479 (479) Q Consensus 476 ~det 479 (479) ++|. T Consensus 462 ~~~~ 465 (472) T protein:vir:93 462 QQER 465 (472) T ss_pred CCCC Confidence 2222 No 18 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=100.00 E-value=1.2e-91 Score=518.99 Aligned_cols=453 Identities=21% Similarity=0.286 Sum_probs=369.5 Q ss_pred CCC------------------------cccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccc Q lcl|Aclame:pro 1 MLN------------------------IYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNK 56 (479) Q Consensus 1 ~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~ 56 (479) |+. +|.++...-. ...+...|.++|++|... +.+||+++.+||+|+|+++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~---~~~~~~~i~~~i~~~~~~-~~~r~~~l~~Yy~g~~~i~~~ 76 (511) T protein:vir:99 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESD---LLQNVNEVSKYIEHHMDY-QRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCccccchhhhh---hhccHHHHHHHHHHHHHh-hHHHHHHHHHHhcccCccccc Confidence 221 1222211111 111234455666655444 456899999999999999876 Q ss_pred ccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCe Q lcl|Aclame:pro 57 RRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGV 135 (479) Q Consensus 57 ~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~ 135 (479) +... ....++++|+++||++.||++.++||+|+|+++++++++.++.++.|+ .|+|+..+.++++.+++||+ T Consensus 77 ~~~~-------~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ 149 (511) T protein:vir:99 77 LTRR-------KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGK 149 (511) T ss_pred cCcc-------cccccCcceeecchHHHHHHHHHhhhcccCceeecCchHHHHHHHHHHhhcCHhHHHHHHHHHHHhcCe Confidence 5432 334567889999999999999999999999999999999988888765 68999999999999999999 Q ss_pred EEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccC---ceEEEEEEEeCCcEEEEEEcCCcccccc Q lcl|Aclame:pro 136 EWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDG---NKIKRVEYYTENDITYFIERGNSFIQEF 212 (479) Q Consensus 136 ~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~y~~~~i~~~~~~~~~~~~~~ 212 (479) +|+++|+|++|++++++++|++++|+||++...++++++|+|.....++ +.+.++++|+++++++|+..+++... T Consensus 150 a~~~vy~ded~~~~i~~~~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~-- 227 (511) T protein:vir:99 150 AYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLK-- 227 (511) T ss_pred eEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCcccc-- Confidence 9999999999999999999999999999988888999999998765543 45678999999999999887654321 Q ss_pred ccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcc Q lcl|Aclame:pro 213 LYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGT 292 (479) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~ 292 (479) .........+|+||.||||+|.|++.|+|+|+++++|||+||.++|++++.++++++|+++++|..+. T Consensus 228 ------------~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~ 295 (511) T protein:vir:99 228 ------------LTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNL 295 (511) T ss_pred ------------ccccccccccCCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhchhhhhccCccc Confidence 12334567899999999999999999999999999999999999999999999999999999997655 Q ss_pred chhhHHHHhhcccce-------------ecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHH Q lcl|Aclame:pro 293 SLQEFIDNIRYYKSI-------------KVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGV 358 (479) Q Consensus 293 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~ 358 (479) +..+... ...++++ ...++++++|++++.+.+++++++++|.+.|+.+|++|+++++.+ ||+||+ T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~gn~Sg~ 374 (511) T protein:vir:99 296 DPVEVRK-QKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGE 374 (511) T ss_pred Cchhhcc-cccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHH Confidence 5443322 2222222 235578899999999999999999999999999999999988775 789999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHH Q lcl|Aclame:pro 359 ALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNK--SYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDET 436 (479) Q Consensus 359 Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~--~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et 436 (479) ||+++++++.+||.++++.|+++|++++++|+++++..+.. ..++.+++++|++++|.|.++.++++++++|++|+|| T Consensus 375 Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~i~f~~~~p~n~~e~~~~~~kl~GiiS~et 454 (511) T protein:vir:99 375 AMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDVSKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTT 454 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHHHHHHHHHHHhccCCHHH Confidence 99999999999999999999999999999999999876653 4456689999999999999999999999999999999 Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCC------CCCCCcCCC Q lcl|Aclame:pro 437 IVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPN------NQDGVIDET 479 (479) Q Consensus 437 ~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~------~~~~~~det 479 (479) +++++|+++|+++|++||++|++++.+....... .+++..+++ T Consensus 455 ~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (511) T protein:vir:99 455 LMSLFSFFQDPELEVKKIEEDEKESIKKAQKNMYQDPRNINDDEQDDST 503 (511) T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCC Confidence 9999999999999999999998865543332211 111222222 No 19 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=100.00 E-value=7.4e-92 Score=520.21 Aligned_cols=432 Identities=32% Similarity=0.577 Sum_probs=377.4 Q ss_pred cChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCe Q lcl|Aclame:pro 19 ESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPI 98 (479) Q Consensus 19 ~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~ 98 (479) ++...|.++|+++.. +..|+.++++||+|+|++++++...... ......++++|+++||++.||++.++||+|+|+ T Consensus 1 l~~~~i~~~i~~~~~--~~~r~~~~~~YY~g~~~i~~~~~~~~~~--~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~ 76 (451) T protein:vir:10 1 MELEKIRAIISADAA--RRQEILQAKSYYYNKNDILKKGVVVQNR--DENPLRNADNRISHNFHEILVDEKASYMFTYPV 76 (451) T ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHHHhcccCcccccccccccc--ccccccccccccccchHHHHHHhhhhheecccc Confidence 777888888877654 5678999999999999999877554332 234456788999999999999999999999999 Q ss_pred eecCCc-hhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCC--------CceEEEEEccceeEEEEcCCCCCc Q lcl|Aclame:pro 99 VFNADD-DNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRK--------GEFKYVIIPAEEAIPIWDSKRQRE 169 (479) Q Consensus 99 ~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~--------~~~~i~~~~p~~~~~~~d~~~~~~ 169 (479) ++++++ +...+.++.|++|+++..+.++++.++++|.+|+++|++++ |.+++.+++|++++|+|++...++ T Consensus 77 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~~~~vydd~~~~~ 156 (451) T protein:vir:10 77 LFDIDNNKELNEKVTDVLGNEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEEIIPIYRNGIERE 156 (451) T ss_pred eeecCCcHHHHHHHHHHhccCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccceEEEEcCCCCCc Confidence 998754 66778999999999999999999999999999999999985 788999999999999999988889 Q ss_pred eEEEEEEEeeecccC-----ceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEE Q lcl|Aclame:pro 170 LVAFIRFYYIEDIDG-----NKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIP 244 (479) Q Consensus 170 ~~~~i~~~~~~~~~~-----~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~ 244 (479) +.+++|+|...+.++ +.+.++++||++.+++|...+..... ....+...+|+||+||||+ T Consensus 157 ~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~g~vPvv~ 221 (451) T protein:vir:10 157 LEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSCCG---------------SQIEHITVQHRFNSVPFVE 221 (451) T ss_pred eEEEEEEEEeeecccccccceEEEEEEEEeCCeEEEEEecccCccc---------------cccccccccCCCCeeeEEE Confidence 999999998766543 34678999999999999876544322 2334567799999999999 Q ss_pred ecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecC-----CCCcceeee Q lcl|Aclame:pro 245 FKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVD-----GGGGVDKLE 319 (479) Q Consensus 245 ~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 319 (479) |+|++.|.|+|+++++|||+||.++|++++.++++++|+++++|+++....++..+++..+++.++ .+++++|++ T Consensus 222 ~~nn~~~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 301 (451) T protein:vir:10 222 FSNNIKKQSDLSKYKKILDLYDRVMSGFANDLEDIQQIIYILENFGGEDTSEFLKELKRYKTIKTETDSEGDSGGLKTMQ 301 (451) T ss_pred eccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccchhhHHHHhhCCeEEecCcCCccCCcceEEe Confidence 999999999999999999999999999999999999999999999988888888888888887765 357899999 Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 320 INIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNK 399 (479) Q Consensus 320 ~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~ 399 (479) ++.+.+++++++++|++.|+.+|++|+++...+||+||+||++++.++.+||.++++.|+++|++++++|+.+++. T Consensus 302 ~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~---- 377 (451) T protein:vir:10 302 IEIPTEARKIILEILKKQIYESGQGLQQDTENFGNASGVALKFFYRKLELKSGLLETEFRTSFDKLIKAILYFLGV---- 377 (451) T ss_pred ecCCHHHHHHHHHHHHHHHHHHhCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---- Confidence 9999999999999999999999999999998899999999999999999999999999999999999999998764 Q ss_pred ccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCcC Q lcl|Aclame:pro 400 SYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVID 477 (479) Q Consensus 400 ~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~d 477 (479) .+..+++++|++++|.|.++.++++++++|++|+||+++++|+++|+++|++++++|++++....+...+.. +| T Consensus 378 -~d~~~i~i~f~~~~p~n~~e~~~~~~kl~g~iS~et~~~~~p~v~d~~~e~~~~~ee~~~~~~~~~~~~~~~---~~ 451 (451) T protein:vir:10 378 -TDYKKIQQTYTRNMMSNDLEDADIATKSVGIIPTKIILRHHPWVDDVEEAEKLYLEEKKIQASKVSDDYNNF---TE 451 (451) T ss_pred -CCccceeEEecCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC---CC Confidence 256789999999999999999999999999999999999999999999999999888776544332222222 22 No 20 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=100.00 E-value=8.4e-92 Score=519.89 Aligned_cols=456 Identities=34% Similarity=0.649 Sum_probs=386.8 Q ss_pred CCCcccCcHHH------HHHHH--hccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccccccccccccccccc Q lcl|Aclame:pro 1 MLNIYISETDL------IKVQL--KKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTK 72 (479) Q Consensus 1 ~~~~~~~~~~~------~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (479) |-|+.-+|.+. +.... ...+...|.++|.++. .+..|++++.+||.|+|+++++...... .......+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~--~~~~~~~~~~~Yy~g~~~i~~r~~~~~~--~~~~~~~~ 76 (474) T protein:vir:95 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIIRLIDDHR--KQLDKITVGQRYYDKDNDIVKQMKKVDV--YGNIDYDK 76 (474) T ss_pred CcceeecCCCCchhhHHHHhhhhccCChHHHHHHHHHHHH--HHHHHHHHHHHHhcccCchhcccccccc--cccccccc Confidence 99999888773 22221 2233344444444332 3567899999999999999887654332 23344567 Q ss_pred CcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEE Q lcl|Aclame:pro 73 VNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVI 152 (479) Q Consensus 73 ~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~ 152 (479) +++|+++||++.||++.++||+|+|+++++++++..+.++.|++|+++..+.++++.++++|++|+++|+|++|++++.+ T Consensus 77 ~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~~n~~~~~~~e~~~~~~~~G~~~~~v~~d~~~~~~i~~ 156 (474) T protein:vir:95 77 PDWRITTNFHQNLVDQKVSYVASKPVTYSCEDESVLKIIHDVLDTRWDNKLIDILTATSNKGIDWLQVYINENGEMKLFR 156 (474) T ss_pred ccceeccchHHHHHHHHHhhhccCCceeccCchHHHHHHHHHHhccHHHHHHHHHHHHhhcCcEEEEEEecCCCceEEEE Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccc Q lcl|Aclame:pro 153 IPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINN 232 (479) Q Consensus 153 ~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479) ++|++++|+|++....++.+++++|...+ ..++++|+++++++|+..++++...... ......... T Consensus 157 ~~p~~~~~v~d~~~~~~~~~~i~~~~~~~-----~~~~~~y~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 222 (474) T protein:vir:95 157 VPAEQAIPIWVDKEREELKSFIRYYKFNN-----EEKVEFWTDTTVTYYVLENGGLIPDYYY---------GANHIQSHF 222 (474) T ss_pred EcccceEEEEcCCCCCceEEEEEEEEEcC-----eeEEEEEeCCeEEEEEEcCCcccccccc---------Ccccccccc Confidence 99999999999988888999999987533 2378999999999999887765433221 122334567 Q ss_pred ccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCC Q lcl|Aclame:pro 233 KEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGG 312 (479) Q Consensus 233 ~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 312 (479) .+|++|.||||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|+.+.+.+++..+++..+++.++++ T Consensus 223 ~~~~~g~iPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~ 302 (474) T protein:vir:95 223 SNGNWGRVPFIAFKNNPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVELIYILKGYEGQDLEEFMRGLKYYKAINVDGD 302 (474) T ss_pred cccCCCccceEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhhhhhhhccceeeccCC Confidence 88999999999999999999999999999999999999999999999999999999998888888888999999999999 Q ss_pred CcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 313 GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCE 391 (479) Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 391 (479) ++++|++++++.++++.+++.+++.|+.+|++|+++++.+ ||+||+||+++++++.+||.++++.|+++|++++++|++ T Consensus 303 ~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~ 382 (474) T protein:vir:95 303 GGVETIQVEVPVSSTKEYIDLMRAYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIID 382 (474) T ss_pred CceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999999999999999999999999999999999988765 689999999999999999999999999999999999998 Q ss_pred HHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCC- Q lcl|Aclame:pro 392 YLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPN- 470 (479) Q Consensus 392 ~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~- 470 (479) +++. ..+..+++|+|++++|.|.++.|++++++ |++|++|+++++|+++|+++|++||++|+++.....+.... T Consensus 383 ~~g~----~~d~~~i~v~f~~~~p~d~~e~a~~~~~~-g~iS~et~i~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~ 457 (474) T protein:vir:95 383 FNNL----KMDVKDIEISFNFNRMMNDAEQSQIIAQS-QYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDG 457 (474) T ss_pred HhCC----CcccceeeEEeccCCCcCHHHHHHHHHhc-CCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccccc Confidence 8653 45678899999999999999999999885 99999999999999999999999999998765544322222 Q ss_pred -CC-----CCCcCCC Q lcl|Aclame:pro 471 -NQ-----DGVIDET 479 (479) Q Consensus 471 -~~-----~~~~det 479 (479) .+ .+.+|++ T Consensus 458 ~~d~~~~~~~~~~~~ 472 (474) T protein:vir:95 458 GADGAQQQERSNDKE 472 (474) T ss_pred cCCCCcCCCCCccCC Confidence 11 1122222 No 21 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=100.00 E-value=2.8e-91 Score=517.07 Aligned_cols=453 Identities=20% Similarity=0.283 Sum_probs=368.9 Q ss_pred CCCc------------------------ccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccc Q lcl|Aclame:pro 1 MLNI------------------------YISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNK 56 (479) Q Consensus 1 ~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~ 56 (479) |+.+ |.++...-. ...+...|.++|++|... +.+||+++++||+|+|+++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~---~~~~~~~i~~~i~~~~~~-~~~r~~~l~~Yy~g~~~i~~~ 76 (511) T protein:vir:96 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESD---LLQNVNEVSKYIEHHMDY-QRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCccccchhhhh---hhccHHHHHHHHHHHHHh-hHHHHHHHHHHhcccCccccc Confidence 3221 111111110 111234455556555444 456899999999999999876 Q ss_pred ccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCe Q lcl|Aclame:pro 57 RRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGV 135 (479) Q Consensus 57 ~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~ 135 (479) +... ....++++|+++||++.||++.++||+|+||++++++++.++.++.|+ .|+|+..+.++++.+++||+ T Consensus 77 ~~~~-------~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ 149 (511) T protein:vir:96 77 LTRR-------KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGK 149 (511) T ss_pred cCcC-------cccccCcceeecchHHHHHHHHHhhhccCCceeecCchHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCe Confidence 5432 334467889999999999999999999999999999998888887765 68999999999999999999 Q ss_pred EEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccC---ceEEEEEEEeCCcEEEEEEcCCcccccc Q lcl|Aclame:pro 136 EWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDG---NKIKRVEYYTENDITYFIERGNSFIQEF 212 (479) Q Consensus 136 ~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~y~~~~i~~~~~~~~~~~~~~ 212 (479) +|+++|+|++|.+++++++|++++|+||++...++++++|+|.....++ +.+.++++|+++++++|...++.+.. T Consensus 150 a~~~vy~ded~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~-- 227 (511) T protein:vir:96 150 AYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLK-- 227 (511) T ss_pred eEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccc-- Confidence 9999999999999999999999999999988889999999998765553 45678899999999999887655432 Q ss_pred ccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcc Q lcl|Aclame:pro 213 LYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGT 292 (479) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~ 292 (479) .........+|+||.||||+|+|++.|+|+|++++++||+||.++|++++.++++++|+++++|.... T Consensus 228 ------------~~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~ 295 (511) T protein:vir:96 228 ------------LTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNL 295 (511) T ss_pred ------------ccccccccccccCCceeeEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCccC Confidence 12334567899999999999999999999999999999999999999999999999999999997655 Q ss_pred chhhHHHHhhcccce-------------ecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHH Q lcl|Aclame:pro 293 SLQEFIDNIRYYKSI-------------KVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGV 358 (479) Q Consensus 293 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~ 358 (479) +..+... ...+..+ ...++++++|++++.+.+++++++++|.+.|+.+|++|+++++.+ ||+||+ T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~ 374 (511) T protein:vir:96 296 DPVEVRK-QKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGE 374 (511) T ss_pred Cchhhcc-cccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHH Confidence 5444322 1112111 234578899999999999999999999999999999999998875 789999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHH Q lcl|Aclame:pro 359 ALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNK--SYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDET 436 (479) Q Consensus 359 Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~--~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et 436 (479) ||+++++++.++|.++++.|+++|++++++|+++++..+.. ..+..+++++|++++|.|.++.++++++++|++|+|| T Consensus 375 Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl~G~iS~et 454 (511) T protein:vir:96 375 AMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTT 454 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccceEEeCCCCCCCHHHHHHHHHHHhccCChHH Confidence 99999999999999999999999999999999998876543 4556789999999999999999999999999999999 Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccC--CCCC----CCcCCC Q lcl|Aclame:pro 437 IVSNHPWVEDVNDELERLKKQEDTQKEYDDLIP--NNQD----GVIDET 479 (479) Q Consensus 437 ~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~--~~~~----~~~det 479 (479) +++++|+++|+++|++||++|+++..+..+... .... ...+++ T Consensus 455 ~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (511) T protein:vir:96 455 LMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDT 503 (511) T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCcc Confidence 999999999999999999999876655433222 1111 111222 No 22 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=100.00 E-value=2.2e-91 Score=517.58 Aligned_cols=456 Identities=20% Similarity=0.278 Sum_probs=370.1 Q ss_pred CCCcc--cCc---------------HHHHHHHH----hccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccc Q lcl|Aclame:pro 1 MLNIY--ISE---------------TDLIKVQL----KKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRY 59 (479) Q Consensus 1 ~~~~~--~~~---------------~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~ 59 (479) |+.+= ... +..+.+.. ...+...|.++|++|... +.+||+++.+||+|+|++++++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~-~~~r~~~l~~Yy~g~~~il~~~~~ 79 (511) T protein:vir:96 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDY-QRPRLKVLSDYYEGKTKNLVELTR 79 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHHHHHh-hhHHHHHHHHHhhccCccccccCc Confidence 32211 100 11111111 112234455666665544 356899999999999999876543 Q ss_pred cccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEE Q lcl|Aclame:pro 60 YLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWL 138 (479) Q Consensus 60 ~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~ 138 (479) . ....++++|+++||++.||++.++||+|+||++++++++.++.++.|+ .|+++..+.++++.+++||++|+ T Consensus 80 ~-------~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~ 152 (511) T protein:vir:96 80 R-------KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYE 152 (511) T ss_pred c-------cccccCcceeecchHHHHHHHHhhhhcccCceeecCchHHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEE Confidence 2 334567889999999999999999999999999999988888877765 68999999999999999999999 Q ss_pred EEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccC---ceEEEEEEEeCCcEEEEEEcCCccccccccc Q lcl|Aclame:pro 139 HPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDG---NKIKRVEYYTENDITYFIERGNSFIQEFLYD 215 (479) Q Consensus 139 ~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~ 215 (479) ++|+|++|.+++++++|++++|+||+....++++++|+|.....++ +.+.++++||++++++|...++++.. T Consensus 153 ~vy~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~----- 227 (511) T protein:vir:96 153 LMIRNQDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLK----- 227 (511) T ss_pred EEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccc----- Confidence 9999999999999999999999999988888999999998765543 45678999999999999887655432 Q ss_pred cccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchh Q lcl|Aclame:pro 216 EYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQ 295 (479) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~ 295 (479) .........+|+||.||||+|.|+..|+|+|++++++||+||.++|++++.++++++|+++++|..+.+.+ T Consensus 228 ---------~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~ 298 (511) T protein:vir:96 228 ---------LTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPV 298 (511) T ss_pred ---------ccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCch Confidence 12234567899999999999999999999999999999999999999999999999999999997655544 Q ss_pred hHHHHhhcccce-------------ecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHH Q lcl|Aclame:pro 296 EFIDNIRYYKSI-------------KVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALK 361 (479) Q Consensus 296 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~ 361 (479) +... ......+ ...++++++|++++.+.+++++++++|++.|+.+|++|+++++.+ ||+||+||+ T Consensus 299 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~ 377 (511) T protein:vir:96 299 EVRK-QKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMK 377 (511) T ss_pred hhcc-cccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHH Confidence 4322 1112222 234568899999999999999999999999999999999998876 789999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHH Q lcl|Aclame:pro 362 FLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNK--SYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVS 439 (479) Q Consensus 362 ~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~--~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~ 439 (479) ++++++.+|+..+++.|+++|++++++|+++++..+.. ..+..+++++|++++|.|.++.++++++++|++|+||+++ T Consensus 378 ~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~G~iS~et~l~ 457 (511) T protein:vir:96 378 YKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMS 457 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHHHH Confidence 99999999999999999999999999999998876543 4566789999999999999999999999999999999999 Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHhhhhccCC------CCCCCcCCC Q lcl|Aclame:pro 440 NHPWVEDVNDELERLKKQEDTQKEYDDLIPN------NQDGVIDET 479 (479) Q Consensus 440 ~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~------~~~~~~det 479 (479) ++|+++|+++||+||++|++++.+..+.... .+++..+++ T Consensus 458 ~l~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (511) T protein:vir:96 458 LFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDT 503 (511) T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCc Confidence 9999999999999999998876554433221 111222222 No 23 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=100.00 E-value=2.2e-91 Score=517.58 Aligned_cols=456 Identities=20% Similarity=0.278 Sum_probs=370.1 Q ss_pred CCCcc--cCc---------------HHHHHHHH----hccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccc Q lcl|Aclame:pro 1 MLNIY--ISE---------------TDLIKVQL----KKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRY 59 (479) Q Consensus 1 ~~~~~--~~~---------------~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~ 59 (479) |+.+= ... +..+.+.. ...+...|.++|++|... +.+||+++.+||+|+|++++++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~-~~~r~~~l~~Yy~g~~~il~~~~~ 79 (511) T protein:vir:78 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDY-QRPRLKVLSDYYEGKTKNLVELTR 79 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHHHHHh-hhHHHHHHHHHhhccCccccccCc Confidence 32211 100 11111111 112234455666665544 356899999999999999876543 Q ss_pred cccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEE Q lcl|Aclame:pro 60 YLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWL 138 (479) Q Consensus 60 ~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~ 138 (479) . ....++++|+++||++.||++.++||+|+||++++++++.++.++.|+ .|+++..+.++++.+++||++|+ T Consensus 80 ~-------~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~ 152 (511) T protein:vir:78 80 R-------KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYE 152 (511) T ss_pred c-------cccccCcceeecchHHHHHHHHhhhhcccCceeecCchHHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEE Confidence 2 334567889999999999999999999999999999988888877765 68999999999999999999999 Q ss_pred EEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccC---ceEEEEEEEeCCcEEEEEEcCCccccccccc Q lcl|Aclame:pro 139 HPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDG---NKIKRVEYYTENDITYFIERGNSFIQEFLYD 215 (479) Q Consensus 139 ~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~ 215 (479) ++|+|++|.+++++++|++++|+||+....++++++|+|.....++ +.+.++++||++++++|...++++.. T Consensus 153 ~vy~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~----- 227 (511) T protein:vir:78 153 LMIRNQDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLK----- 227 (511) T ss_pred EEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccc----- Confidence 9999999999999999999999999988888999999998765543 45678999999999999887655432 Q ss_pred cccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchh Q lcl|Aclame:pro 216 EYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQ 295 (479) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~ 295 (479) .........+|+||.||||+|.|+..|+|+|++++++||+||.++|++++.++++++|+++++|..+.+.+ T Consensus 228 ---------~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~ 298 (511) T protein:vir:78 228 ---------LTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPV 298 (511) T ss_pred ---------ccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCch Confidence 12234567899999999999999999999999999999999999999999999999999999997655544 Q ss_pred hHHHHhhcccce-------------ecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHH Q lcl|Aclame:pro 296 EFIDNIRYYKSI-------------KVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALK 361 (479) Q Consensus 296 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~ 361 (479) +... ......+ ...++++++|++++.+.+++++++++|++.|+.+|++|+++++.+ ||+||+||+ T Consensus 299 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~ 377 (511) T protein:vir:78 299 EVRK-QKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMK 377 (511) T ss_pred hhcc-cccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHH Confidence 4322 1112222 234568899999999999999999999999999999999998876 789999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHH Q lcl|Aclame:pro 362 FLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNK--SYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVS 439 (479) Q Consensus 362 ~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~--~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~ 439 (479) ++++++.+|+..+++.|+++|++++++|+++++..+.. ..+..+++++|++++|.|.++.++++++++|++|+||+++ T Consensus 378 ~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~G~iS~et~l~ 457 (511) T protein:vir:78 378 YKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMS 457 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHHHH Confidence 99999999999999999999999999999998876543 4566789999999999999999999999999999999999 Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHhhhhccCC------CCCCCcCCC Q lcl|Aclame:pro 440 NHPWVEDVNDELERLKKQEDTQKEYDDLIPN------NQDGVIDET 479 (479) Q Consensus 440 ~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~------~~~~~~det 479 (479) ++|+++|+++||+||++|++++.+..+.... .+++..+++ T Consensus 458 ~l~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (511) T protein:vir:78 458 LFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDT 503 (511) T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCc Confidence 9999999999999999998876554433221 111222222 No 24 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=100.00 E-value=7.6e-92 Score=520.13 Aligned_cols=469 Identities=25% Similarity=0.378 Sum_probs=381.5 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccc-cccccccccCcceeecchHHHH Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLD-GAKVDDFTKVNNKAINNYHKLL 85 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~-~~~~~~~~~~~~ri~~n~~~~i 85 (479) |+..++..+...... .+.+.|..+..++++++++.+++||+|+|+|++++...... ........++++|+++||++.| T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~YY~g~h~Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~k~I 79 (537) T protein:vir:78 1 MTSPLLNKPIDQLGG-LLNTEITTYMASNHIKWAHIGENYYNQENDIEKSRIFYMNDKGQLREDNYASNVKISHGFFTEL 79 (537) T ss_pred CCcccccccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccccccccccccccccccccccccchHHHH Confidence 566666665544333 35555666666667889999999999999999988765544 3344566789999999999999 Q ss_pred HHHHHhhhhccCeeecCCchh---HHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEE Q lcl|Aclame:pro 86 VDQKVGYSVGNPIVFNADDDN---LTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIW 162 (479) Q Consensus 86 v~~~a~~l~g~~~~~~~~~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~ 162 (479) |++.++||+|+||+++++++. ..+.++.|.+|+++..+.++++.++++|++|+++|.|++|.+++..++|++++|+| T Consensus 80 vd~~~~yl~G~Pv~~~~~d~~~~e~~~~l~~~~~~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~~~~~i~p~~~~pv~ 159 (537) T protein:vir:78 80 VDQLAQYLLSNGVEVKVKDEDNTQLDEILQEYFDEDFQATIDTLVTNASKKGFEGIFARTTSEGKLKFQTVDGLTLIPVF 159 (537) T ss_pred HHHHhhhhcccCceeecCcchhHHHHHHHHHHhhccHHHHHHHHHHHHhhcCeeEEEeeecCCCceEEEEEccceeEEEE Confidence 999999999999999987654 45566777789999999999999999999999999999999999999999999999 Q ss_pred cCCCCCceEEEEEEEeeec-----ccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccc-------------cc Q lcl|Aclame:pro 163 DSKRQRELVAFIRFYYIED-----IDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTD-------------IQ 224 (479) Q Consensus 163 d~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 224 (479) |+. .++.+++++|.... .+++.+.++++||++.+++|+..+++............... .. T Consensus 160 d~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 237 (537) T protein:vir:78 160 DDY--GVLKMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAIEESTDADF 237 (537) T ss_pred cCC--CCceeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccccccccceeeeccccccccc Confidence 975 46778888876543 34467889999999999999988776544332222221111 11 Q ss_pred ccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcc Q lcl|Aclame:pro 225 EGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYY 304 (479) Q Consensus 225 ~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~ 304 (479) .........+|+||+||||+|+||..|+|+|+++++|||+||.++|++++.++++++|+++++|+.++..+++...++.. T Consensus 238 ~~~~~~~~~~~~~g~iPvv~f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ilvi~g~~~~~~~~~~~~l~~~ 317 (537) T protein:vir:78 238 EDTDGYQVLGRSYSKFPFQLLYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAIYVVKGFSGDSTDKLRQNIKAK 317 (537) T ss_pred cccccccccccCCcceeEEEeccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCceeeeecCCCccchhHHHHHhhc Confidence 22334567789999999999999999999999999999999999999999999999999999999888888888888888 Q ss_pred cceecCC-CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 305 KSIKVDG-GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIR 383 (479) Q Consensus 305 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~ 383 (479) +++.+++ +++++|++|+.+.++++.++++|++.|+.+|++|+.+...+||+||+||+++++++.+||..+++.|+++|+ T Consensus 318 ~~i~v~~d~~~v~~l~~~~~~~~~e~~ld~L~~~I~~~s~~~~~~~~~~gn~SGvAlk~~~~~l~~ka~~ke~~f~~~l~ 397 (537) T protein:vir:78 318 KMIGVNGDNAGMEIQTVSIPYEARKAKMDIDVENIYRSGMGFNSTAVGDGNVTNVVIKSRYTLLAMKARKMETSLRKVLR 397 (537) T ss_pred CceeecCCCCceeEEEecCCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHH Confidence 8888874 688999999999999999999999999999999999888889999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 384 ELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKST--GIVSDETIVSNHPWVEDVNDELERLKKQEDTQ 461 (479) Q Consensus 384 ~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~--g~is~et~~~~l~~~~d~~~El~~i~~E~~~~ 461 (479) +++++|+++++..+.++++..+++++|++++|.|..+.|++++++. |++|++|+++++|+++|++.| +++++|.+.. T Consensus 398 ~~~~~i~~~~~~~~~~~~d~~~i~i~f~~~~P~n~~e~a~~~~~l~~~giiS~eT~l~~~p~vdd~e~e-k~~~ee~~~~ 476 (537) T protein:vir:78 398 WCADMVVSDIALRGLGEYDSNDICFEIEPHVLANELDIATTRKTEAETEALKIGNIMTVAPRIGDDETL-KLIAEELDLD 476 (537) T ss_pred HHHHHHHHHHhhcCCcccccceeeEEeccCCCCCHHHHHHHHHHHHhcCcchHHHHHHhCCCCCCHHHH-HHHHHHHHhh Confidence 9999999999998888888999999999999999999999999874 899999999999999997433 3333332211 Q ss_pred Hhh-h-----------hccCCCCCCC-----------cCCC Q lcl|Aclame:pro 462 KEY-D-----------DLIPNNQDGV-----------IDET 479 (479) Q Consensus 462 ~~~-~-----------~~~~~~~~~~-----------~det 479 (479) .+. . +..++.+... .|++ T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 517 (537) T protein:vir:78 477 YNELKDALAEQDAQSLDVSPDVQAMLDGLPVNANQPPVDPN 517 (537) T ss_pred hhhhhhhhhhhcccccCcCcchhhhcCCCCCCCCCCCCCcc Confidence 110 0 0001100000 0111 No 25 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=100.00 E-value=4.1e-91 Score=516.14 Aligned_cols=461 Identities=37% Similarity=0.656 Sum_probs=384.8 Q ss_pred CCCc-ccCc----HHHHHHH--HhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccC Q lcl|Aclame:pro 1 MLNI-YISE----TDLIKVQ--LKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKV 73 (479) Q Consensus 1 ~~~~-~~~~----~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~ 73 (479) |+.+ |=-+ ...+... ........|.+++.+|. .+.++++++++||+|+|++++++.... ........++ T Consensus 1 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~~i~~~~--~~~~~~~~~~~yY~g~~~i~~~~~~~~--~~~~~~~~~~ 76 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVREHK--ENIDNITMGERYYNHHPDILDAPPKRD--VNGDYDETKP 76 (478) T ss_pred CccccCCCCchhHHHHHHHHhhccCCcHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCchhccccccc--cccccccccc Confidence 9999 7211 2222221 12344566666666554 356789999999999999987654322 2233345678 Q ss_pred cceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEE Q lcl|Aclame:pro 74 NNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVII 153 (479) Q Consensus 74 ~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~ 153 (479) ++|+++||++.||++.++||||+||++++++++..+.++.|++|+++..+.++++.++++|++|+++|.|++|+++++++ T Consensus 77 ~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~d~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~~~~~~ 156 (478) T protein:vir:10 77 DWRMYTNYHQNLVDQKVAYAVANPVTFGVDNDKALKQIQHTLNHKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFRV 156 (478) T ss_pred cceeccchHHHHHHHHHhhhccCCeeeecCChHHHHHHHHHHhcCHHHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEE Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 154 PAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNK 233 (479) Q Consensus 154 ~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479) +|++++|+|+++...++.+++++|.... ..++++|+++++++|+..++........ .......+...... T Consensus 157 ~p~~~~~i~d~~~~~~~~~~v~~~~~~~-----~~~~~~y~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 226 (478) T protein:vir:10 157 PAEQAVPIWTNKERDELQAFIRVYELDG-----AERVEYWTKDDVTYYELKEGQLIPDFYR-----SDDHIQPHYYQGNK 226 (478) T ss_pred cccceEEEEcCCCCCceEEEEEEEEecC-----ceEEEEEeCCeEEEEEEcCCeeeccccc-----cccccccceecccc Confidence 9999999999988888999999987532 2478999999999998876654432211 11222334456678 Q ss_pred cccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecC--C Q lcl|Aclame:pro 234 EQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVD--G 311 (479) Q Consensus 234 ~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~--~ 311 (479) +|++|+||||+|.|++.|+|+|+++++|||+||.++|++++.++++++|+++++|+.+.+..++...++..+++.++ + T Consensus 227 ~~~~~~vPvv~~~n~~~g~sd~~~v~~liDa~~~~~S~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (478) T protein:vir:10 227 LMSWGRVPFIPFKNNPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGEDMKDFMHNLKYYKAISVAGES 306 (478) T ss_pred cccCCccceEEeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccchhhhhhhhcceEEecCCC Confidence 99999999999999999999999999999999999999999999999999999999888777777788888887775 5 Q ss_pred CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVC 390 (479) Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 390 (479) +++++|++++++.++++.+++++++.|+.+|++|+++++.+ ||+||+|++++++++.+|+.++++.|+++|++++++|+ T Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 386 (478) T protein:vir:10 307 GSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYII 386 (478) T ss_pred CCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 68999999999999999999999999999999999998876 68999999999999999999999999999999999999 Q ss_pred HHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhcc-C Q lcl|Aclame:pro 391 EYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLI-P 469 (479) Q Consensus 391 ~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~-~ 469 (479) ++++ .+.+..+++++|++++|+|.++.|+++++++|++|+||+++++|+++|+++|++||++|+++..+..... . T Consensus 387 ~~~g----~~~~~~~i~i~f~~~~p~d~~e~a~~~~kl~g~iS~et~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~ 462 (478) T protein:vir:10 387 DFYR----LDVKVQDIEITFNFNVMVNELENSQIAMNSTGLLSKETILSNHAWVEDPVAEMERIEQENIELNQQLPDIEE 462 (478) T ss_pred HHhC----CCcccccceEEecCCCCCCHHHHHHHHHHHhCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccc Confidence 8764 3566788999999999999999999999999999999999999999999999999999987654432221 1 Q ss_pred CCCC--CCcCCC Q lcl|Aclame:pro 470 NNQD--GVIDET 479 (479) Q Consensus 470 ~~~~--~~~det 479 (479) +..+ +.++|. T Consensus 463 ~~~~~~~~~~~~ 474 (478) T protein:vir:10 463 GLNGEQQRQSEN 474 (478) T ss_pred ccCCCCCCCCCC Confidence 1111 112222 No 26 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=100.00 E-value=3.2e-91 Score=516.73 Aligned_cols=439 Identities=21% Similarity=0.242 Sum_probs=374.2 Q ss_pred cccCcHHHHHHHHh-ccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchH Q lcl|Aclame:pro 4 IYISETDLIKVQLK-KESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYH 82 (479) Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~ 82 (479) .-...++.+.++.. ......|.++|++|. .+..|++++++||+|+|++++++. ....++++|+++||+ T Consensus 1 ~~~~~~~~~~~p~d~~~~~~~l~~~i~~~~--~~~~r~~~~~~yy~g~~~i~~~~~---------~~~~~~~~ki~~n~~ 69 (453) T protein:vir:39 1 MKYKPPKLMTFPKDEPITNEVVTKFMEKHR--LEVARYEYLKNMYRGIMAIDAEPT---------KDLWKPDNRLTVNFT 69 (453) T ss_pred CeecCCcceEcCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHhhccCchhcCCC---------ccccCccceeecchH Confidence 11344566666554 344455666666553 245789999999999999987754 234568899999999 Q ss_pred HHHHHHHHhhhhccCeeecCCchhHHHHHHH-HHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEE Q lcl|Aclame:pro 83 KLLVDQKVGYSVGNPIVFNADDDNLTKLLND-LLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPI 161 (479) Q Consensus 83 ~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~-~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~ 161 (479) +.||++.++||+|+|+++++++++..+.++. |..|+|+..+.+++++++++|++|++||+|++|.+++++++|++++++ T Consensus 70 ~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~v 149 (453) T protein:vir:39 70 KYIVDTFTGYFNGIPVKKSHSDKETLSKLQEFDNLNDMEDEESELAKMACIYGRAFELLYQNEETQTNVIYNTPENMFMV 149 (453) T ss_pred HHHHHHHhhhhcccCceeccCChHHHHHHHHHHHhcChhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEE Confidence 9999999999999999999998887776665 566899999999999999999999999999999999999999999999 Q ss_pred EcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 162 WDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVP 241 (479) Q Consensus 162 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vP 241 (479) |++...+++.+++++|.. ++...++++|+++++++|...++.+ ..++..+|+||.|| T Consensus 150 ~d~~~~~~~~~~ir~~~~----~~~~~~~~~yt~~~i~~~~~~~~~~-------------------~~~~~~~~~~g~vP 206 (453) T protein:vir:39 150 YDDTIKQEPLFAVRYGYD----DDYKLYGEVYTKETTYALNGTMGFY-------------------NMTEQAPNPFDDLP 206 (453) T ss_pred ecCCCCCeEEEEEEEEEe----CCeEEEEEEEeCCeEEEEEecCCce-------------------eeecccccCCCcee Confidence 999888889999998753 3456789999999999987665433 34467799999999 Q ss_pred eEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceec------CCCCcc Q lcl|Aclame:pro 242 FIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKV------DGGGGV 315 (479) Q Consensus 242 vv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 315 (479) ||+|+|++.|+|+|+++++|+|+||+++|++++.++++++|+++++|.+..+ +...++...+++.+ .+++++ T Consensus 207 vv~~~n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~p~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (453) T protein:vir:39 207 VVEFYFNEERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGAAVEE--EDLKNIRSNRVINYYGESSEAKNVDV 284 (453) T ss_pred EEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCCCc--hhhhhhhhcceeeecCCCCCCCCCce Confidence 9999999999999999999999999999999999999999999999975443 22334444455443 356789 Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 316 DKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKI 395 (479) Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~ 395 (479) +|++++++.+++++++++|++.|+.+|++|+++++.+||+||+||++++++|..|+.++++.|+.+|++++++++++++. T Consensus 285 ~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~ 364 (453) T protein:vir:39 285 KFLEKPDSDSQTENLLDRLTKLIFQTTMVANISDESFGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTN 364 (453) T ss_pred eEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887 Q ss_pred cCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCC Q lcl|Aclame:pro 396 SGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGV 475 (479) Q Consensus 396 ~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~ 475 (479) .+ ...+..+++|+|++++|.|.++.|+++++++|++|+||+++++|+++|+++|++||++|+++.............+. T Consensus 365 ~~-~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl~g~is~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~ 443 (453) T protein:vir:39 365 VS-NKEAWKDIEYTFTRNEPKDIKEQAETANILMGITSQETALSVISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGT 443 (453) T ss_pred cC-CccccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCC Confidence 55 35677899999999999999999999999999999999999999999999999999999987766655555555555 Q ss_pred cCCC Q lcl|Aclame:pro 476 IDET 479 (479) Q Consensus 476 ~det 479 (479) ++++ T Consensus 444 ~~~~ 447 (453) T protein:vir:39 444 DTVV 447 (453) T ss_pred CCCC Confidence 5555 No 27 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=100.00 E-value=1.5e-90 Score=512.98 Aligned_cols=450 Identities=17% Similarity=0.232 Sum_probs=376.8 Q ss_pred CCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecch Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNY 81 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~ 81 (479) |-+++. ..+.......+...|.++|++|. .+.+||+++++||+|+|++++++. ....++++|+++|| T Consensus 1 ~~~~~~--~~~~~~~~~~~~~~i~~~i~~~~--~~~~~~~~l~~Yy~g~~~i~~~~~---------~~~~~~~~ki~~n~ 67 (499) T protein:vir:10 1 MAVVID--KDLLDDVNEPNIEAINYAIRELQ--NRKKRLDKLSDYYNGKQEIEKHEF---------DNATVEAANVMVNH 67 (499) T ss_pred Cccchh--hhHHhhhhcCCHHHHHHHHHHHH--HHHHHHHHHHHHhccccchhcCCc---------CcCCCCcceeecch Confidence 444432 22334445666777777777663 356789999999999999987653 23457889999999 Q ss_pred HHHHHHHHHhhhhccCeeecCCchhHHHHHHH-HHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCc------------- Q lcl|Aclame:pro 82 HKLLVDQKVGYSVGNPIVFNADDDNLTKLLND-LLGEEFDDTITELYLNASNKGVEWLHPYINRKGE------------- 147 (479) Q Consensus 82 ~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~-~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~------------- 147 (479) ++.||++.++||||+|+++++++++..+.++. |..|+|+..+.++++.+++||++|+++|++++|. T Consensus 68 ~~~Iv~~~~~~l~g~p~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~ 147 (499) T protein:vir:10 68 AKYITDMNVGFMTGNPVKYVAEKGKNIDDILEVFNQIDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLT 147 (499) T ss_pred HHHHHHHHhhhhcccCceeecCChhHHHHHHHHHhhcCHhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccc Confidence 99999999999999999999988776666655 4578999999999999999999999999998873 Q ss_pred ----eEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccC-ceEEEEEEEeCCcEEEEEEcCCcccccccccccccccc Q lcl|Aclame:pro 148 ----FKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDG-NKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTD 222 (479) Q Consensus 148 ----~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 222 (479) +++..++|++++++|++....++.+++++|...+.++ +.+.++++||++++++|...+.... T Consensus 148 ~~~~~~~~~v~p~~~~~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~------------- 214 (499) T protein:vir:10 148 PNTELKIEVIDPRATVVVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEV------------- 214 (499) T ss_pred cccceEEEEEcccceEEEecCCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccc------------- Confidence 5789999999999999998888999999998876554 5577899999999999987765432 Q ss_pred ccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhh Q lcl|Aclame:pro 223 IQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIR 302 (479) Q Consensus 223 ~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~ 302 (479) ......+...+|+||.||||+|.|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|.......+...... T Consensus 215 -~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~ 293 (499) T protein:vir:10 215 -SANDPIVYDGENLFGAVPIIEFRNNEERQGDFEQLISLIDAYNLLQTDRISDKEAFVDALLVTFGFGLGDDKDDIQRLK 293 (499) T ss_pred -cCcceecccccCCCCccceEEecCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccccccchhhhhh Confidence 1233456778999999999999999999999999999999999999999999999999999999987666555555555 Q ss_pred cccceec--CCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 303 YYKSIKV--DGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFK 379 (479) Q Consensus 303 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~ 379 (479) .+.+..+ +++++++|++++++.+++++++++|.+.|+.+|++|+++++.+ ||+||+|++++++++.+|+.++++.|+ T Consensus 294 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~~l~~k~~~k~~~~~ 373 (499) T protein:vir:10 294 RGAIEAPPREEGADIEWLTKSFDETQVNLLSQSIENDIHKISYVPNMNDEKFMGNVSGEAMKFKLFGLENLLSIKQRYFF 373 (499) T ss_pred hcceeccCCCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCchhhcccchHHHHHHHHHHHHHHHHHHHHHHH Confidence 5555554 4677899999999999999999999999999999999988765 789999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 380 KAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQED 459 (479) Q Consensus 380 ~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~ 459 (479) ++|++++++++++++..+ ...++.+++++|++++|.|.++.++++++++|++|+||+++++|+++|+++|++||++|++ T Consensus 374 ~~l~~~~~li~~~~~~~~-~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~ 452 (499) T protein:vir:10 374 DGLRRRLKLIQTIVNIKG-ANDDASGCKISLVANIPSNLSDVVNNVKNADGIIPRKYTYSWLPDVDNPQDVIDEMNQQDA 452 (499) T ss_pred HHHHHHHHHHHHHHhccC-CccccccceEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHH Confidence 999999999999988764 5667789999999999999999999999999999999999999999999999999999987 Q ss_pred HHHhhhhccC-------CCCCCCcCCC Q lcl|Aclame:pro 460 TQKEYDDLIP-------NNQDGVIDET 479 (479) Q Consensus 460 ~~~~~~~~~~-------~~~~~~~det 479 (479) +......... ...++..+++ T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (499) T protein:vir:10 453 ETIKKNQEALRGQDPDRLELEDKQDDS 479 (499) T ss_pred HHHHHHHhhhccCCCCCCCCCCCCccc Confidence 6543322211 1112222222 No 28 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=100.00 E-value=7.6e-91 Score=514.66 Aligned_cols=440 Identities=21% Similarity=0.237 Sum_probs=370.4 Q ss_pred CcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchH Q lcl|Aclame:pro 3 NIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYH 82 (479) Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~ 82 (479) --|.-+...+...-...+...|.++|++|. .+.+|+.++.+||+|+|++++++. ....++++|+++||+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~--~~~~r~~~~~~Yy~g~~~i~~~~~---------~~~~~~~~ki~~n~~ 69 (452) T protein:vir:36 1 MKYKPPKLMTFSKDEPITVEVVTKFMEKHK--LEVARYEYLKNMYLGIMAIDDEPA---------KDSWKPDNRLAVNFT 69 (452) T ss_pred CcccCceeEEcCCccCCCHHHHHHHHHHHH--HHHHHHHHHHHHhccccccccCcc---------ccccCccceeecchH Confidence 123222222222223444556666666553 356789999999999999987654 234567899999999 Q ss_pred HHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEE Q lcl|Aclame:pro 83 KLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPI 161 (479) Q Consensus 83 ~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~ 161 (479) +.||++.++||+|+|++++++++..++.++.|+ .|+|+..+.++++.++++|++|+++|+|++|++++++++|.+++|+ T Consensus 70 ~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~v 149 (452) T protein:vir:36 70 KYIVDTFTGYFNGIPVKKSHSDKEILTKLQEFDNLNDMEDEESELAKMACIYGRAFEFLYQDEDTQTNVVYNSPENMFMV 149 (452) T ss_pred HHHHHHHhhhhcccCceeecCChhHHHHHHHHHhhcChhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEE Confidence 999999999999999999999998888887665 5899999999999999999999999999999999999999999999 Q ss_pred EcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 162 WDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVP 241 (479) Q Consensus 162 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vP 241 (479) ||+....++++++++|... ....++++|+++.+++|...++++ ...+..+|+||.|| T Consensus 150 ~d~~~~~~~~~~i~~~~~~----~~~~~~~vyt~~~i~~~~~~~~~~-------------------~~~~~~~~~~g~iP 206 (452) T protein:vir:36 150 YDDTVKQEPLFAVRYGVDE----DKKLQGEVYTLLETIKISGENDEI-------------------SFGEGTYNPYPDLP 206 (452) T ss_pred EcCCCCCceEEEEEEEEec----CceEEEEEEecCeEEEEEEcCCce-------------------EEecceeccCCccc Confidence 9998888899999988633 235688999999999997665432 34466789999999 Q ss_pred eEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCC-----Ccce Q lcl|Aclame:pro 242 FIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGG-----GGVD 316 (479) Q Consensus 242 vv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 316 (479) ||+|+|++.|+|+|+++++|+|+||+++|++++.++++++|+++++|..... +...+++.++++.++.+ ++++ T Consensus 207 vv~~~n~~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~p~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (452) T protein:vir:36 207 VVEFYFNEERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGAAVEE--EDLKNIRSNRVINYYADGEGKNVDVK 284 (452) T ss_pred EEEecCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCCcCc--hhhhhhhhcceEEecCCCCccCCcce Confidence 9999999999999999999999999999999999999999999999976543 44455566666666543 4799 Q ss_pred eeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 317 KLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS 396 (479) Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 396 (479) |++++++.++++.+++++++.|+.+|++|+++++.+||+||+||+++++++.+||.++++.|+.+|++++++|+++++.. T Consensus 285 ~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 364 (452) T protein:vir:36 285 FLEKPDSDSQTENLLDRLTKLIFQTTMVANISDESFGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNV 364 (452) T ss_pred eEeecCCHHHHHHHHHHHHHHHHHHhCccccCcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876 Q ss_pred CCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCc Q lcl|Aclame:pro 397 GNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVI 476 (479) Q Consensus 397 ~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~ 476 (479) + ...+..+++|+|++++|.|.++.++++++++|++|+||+++++|+++|+++|++||++|+++...........+.+.. T Consensus 365 ~-~~~~~~~i~i~f~~~~p~d~~~~a~~~~k~~g~iS~et~~~~~~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~ 443 (452) T protein:vir:36 365 S-NKDSWKDIEYTFTRNEPKDIKEQAETANILMGITSQETALSVISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTD 443 (452) T ss_pred C-CccccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCccc Confidence 5 345778899999999999999999999999999999999999999999999999999999876555433333332222 Q ss_pred CCC Q lcl|Aclame:pro 477 DET 479 (479) Q Consensus 477 det 479 (479) ++. T Consensus 444 ~~~ 446 (452) T protein:vir:36 444 TVV 446 (452) T ss_pred ccC Confidence 222 No 29 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=100.00 E-value=1.3e-90 Score=513.41 Aligned_cols=458 Identities=38% Similarity=0.682 Sum_probs=384.9 Q ss_pred CCCc-ccCcHHHHHHHH------hccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccC Q lcl|Aclame:pro 1 MLNI-YISETDLIKVQL------KKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKV 73 (479) Q Consensus 1 ~~~~-~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~ 73 (479) |.++ |.-.-.-+.... ...+...|.++++++.. +.++|+++++||+|+|++++++..... ....+..++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~--~~~~~~~~~~yY~g~~~i~~~~~~~~~--~~~~~~~~~ 76 (468) T protein:vir:96 1 MIDIFWPNEKPYHERVVEQIKPQYETQEEMILRLITKHKE--NVEDITVGERYYNHQPDVLFNAPKRNV--KGEIDPFKP 76 (468) T ss_pred CccccCCcCceeehheeecccccccCcHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCccccccccccc--ccccccccc Confidence 9999 433333332222 24445555555555432 567899999999999999887654322 233445678 Q ss_pred cceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEE Q lcl|Aclame:pro 74 NNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVII 153 (479) Q Consensus 74 ~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~ 153 (479) ++|+++||++.||++.++||+|+|+++++++++.++.++.|++|+++..+.++++.+++||++|++||+|++|.++++++ T Consensus 77 ~~ki~~n~~~~Iv~~~~~~l~g~p~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~ 156 (468) T protein:vir:96 77 DWRMYTNYHQNLVDQKVAYAVANPVTYGTEDEKSLKTIQEVLNHKWDDKLVDILTAASNKGVEWIQPYVDEQGEFKTFRV 156 (468) T ss_pred ccccccchHHHHHHHHHhhhccCCceeccCChHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEEEEE Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 154 PAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNK 233 (479) Q Consensus 154 ~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479) +|++++|+|++....++.+++++|...+ ..++++|+++++++|+..++........ .......+...... T Consensus 157 ~p~~~~~v~~~~~~~~~~~~ir~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 226 (468) T protein:vir:96 157 PAEQAIPIWTNKERDELKAFIRLYELDG-----GERVEYWTANDVTFYELKDGQLIPDYYQ-----GEEHVQAHYYVGNK 226 (468) T ss_pred cccceEEEEcCCCCCceEEEEEEEEecC-----ceEEEEEeCCeEEEEEEcCCceeecccc-----cccccccceeeccc Confidence 9999999999988888999999987543 2368999999999998877654432221 11222234456778 Q ss_pred cccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecC--C Q lcl|Aclame:pro 234 EQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVD--G 311 (479) Q Consensus 234 ~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~--~ 311 (479) +|+||+||||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|..+.+.+++...++.++++.++ + T Consensus 227 ~~~~~~iPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~~~~~~~~~~~i~~~~d~ 306 (468) T protein:vir:96 227 SMSWNRVPFIPFKNNPQEVSDLFMYKTIIDAMDKRLSDTQNTFDEATELIYVLKGYEGEDLEEFMYNLKYYKAINVDGDG 306 (468) T ss_pred cccCCcccEEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCccccchhhhhhhcCceEEecCCC Confidence 99999999999999999999999999999999999999999999999999999999888878888888888888776 4 Q ss_pred CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVC 390 (479) Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 390 (479) +++++|++++++.++++.++++++++|+.+|++|+++++.+ ||+||+|++++++++.+|+.++++.|+++|++++++|+ T Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~ 386 (468) T protein:vir:96 307 SGGVDTIQIDVPVQSAKEYLDMLRDYVIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYII 386 (468) T ss_pred CCcceEEeecCChHHHHHHHHHHHHHHHHHhCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 57799999999999999999999999999999999998776 58999999999999999999999999999999999999 Q ss_pred HHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCC Q lcl|Aclame:pro 391 EYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPN 470 (479) Q Consensus 391 ~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~ 470 (479) ++++ .+.+..+++|+|++++|.|.++.|+++++ +|++|+||+++++|+++|+++|++||++|+++..+.++...+ T Consensus 387 ~~~g----~~~d~~~i~i~f~~~~p~d~~e~a~~~~~-~g~iS~et~i~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~ 461 (468) T protein:vir:96 387 DFYK----LSIKVQDVEITFNFNVMVNELEQSQIGVN-SQYLSKETVVTNHPWVDDPVAEMERIDQEELALPSIEEGLNG 461 (468) T ss_pred HHhC----CCcccceeeEEecCCCCcCHHHHHHHHHh-cCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhccCC Confidence 8864 34567789999999999999999998876 599999999999999999999999999999877666554433 Q ss_pred CCCCCcCCC Q lcl|Aclame:pro 471 NQDGVIDET 479 (479) Q Consensus 471 ~~~~~~det 479 (479) .. ..+=| T Consensus 462 ~~--~~~~~ 468 (468) T protein:vir:96 462 KE--NNEPT 468 (468) T ss_pred CC--CCCCC Confidence 22 22222 No 30 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=100.00 E-value=2.1e-90 Score=512.26 Aligned_cols=424 Identities=21% Similarity=0.269 Sum_probs=370.9 Q ss_pred cChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCe Q lcl|Aclame:pro 19 ESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPI 98 (479) Q Consensus 19 ~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~ 98 (479) .+..+|.++|++|.. +..||+++++||+|+|+++.++. +...++++|+++||++.||++.++||+|+|+ T Consensus 1 l~~~~l~~~i~~~~~--~~~r~~~l~~yy~g~~~il~~~~---------~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~ 69 (429) T protein:vir:98 1 MTKDLLSELIQKHRS--FNLSYSAYKQLYEGDHAILQQKQ---------KEQYKPDNRLVVNFAKYIVDTFNGYFIGVPV 69 (429) T ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHHHhccccccccccc---------cccCCCcceeecchHHHHHHHHhhhhcccCc Confidence 788888888887743 56899999999999999987543 2345688999999999999999999999999 Q ss_pred eecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEE Q lcl|Aclame:pro 99 VFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFY 177 (479) Q Consensus 99 ~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~ 177 (479) +++++++..++.++.|+ .|+|+..+.++++++++||++|+++|++++|.+++++++|.+++++||+....++++++++| T Consensus 70 ~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~~~~~~p~~~~~v~dd~~~~~~~~~i~~~ 149 (429) T protein:vir:98 70 QTSHENKQVSNYLELLDGYNDQDDNNAELSKICSIYGHGYELVFNDENAEAGITYLTPLEAFIVYDDSIRQKPLFAVRYF 149 (429) T ss_pred eeecCChHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCcEEEEEEcccceEEEEeCCCCCceEEEEEEE Confidence 99999999888888765 58999999999999999999999999999999999999999999999998888899999988 Q ss_pred eeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHH Q lcl|Aclame:pro 178 YIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTF 257 (479) Q Consensus 178 ~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~ 257 (479) ... +...+.++|+.+.+++|...+++ +..++..+|+||.||||+|+|++.|+|+|++ T Consensus 150 ~~~----~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~ 206 (429) T protein:vir:98 150 YNK----GGVLEGSYSDASNITYFKDGEKG-------------------IEIGESEPHPFDGVPMIEYVENEERQSLLAS 206 (429) T ss_pred Eec----CceEEEEEEeCceEEEEEecCCc-------------------eEecccccccCCccceEEecCCCCCCCcHHH Confidence 643 34567889999999888765433 3345677999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCC----CCcceeeecCCCHHHHHHHHHH Q lcl|Aclame:pro 258 YKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDG----GGGVDKLEINIPVEAKKELLDR 333 (479) Q Consensus 258 v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 333 (479) +++++|+||.++|++++.++++++|+++++|..+. +++..++..++++.+++ +++++|++++.+.++++++++. T Consensus 207 v~~liD~~d~~~s~~~~~~~~~~~p~~~i~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 284 (429) T protein:vir:98 207 VVTLINAFNKAISEKANDVEYFADAYLKILGAELD--DETLKSLRDTRIINLKDTDAQQLTVEFLQKPDADATQEHLLDR 284 (429) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCCC--cchhhhHhhCceeeccCCCCCCcceeEEeecCCHHHHHHHHHH Confidence 99999999999999999999999999999997654 34556677777777754 3578999999999999999999 Q ss_pred HHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCC Q lcl|Aclame:pro 334 LEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHS 413 (479) Q Consensus 334 l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~ 413 (479) +.+.|+.+|++|+++++.+||+||+|++++++++.+|+.++++.|+.+|++++++++++++..+. ..+..+++|+|+++ T Consensus 285 l~~~i~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~-~~d~~~i~v~f~~~ 363 (429) T protein:vir:98 285 LENLIFRTAMVANISDESFGTASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKIG-PKDWIGIKYKFTRN 363 (429) T ss_pred HHHHHHHHhCccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ccccccceEEeCCC Confidence 99999999999999999999999999999999999999999999999999999999999887654 56777899999999 Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 414 MIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 414 ~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) +|+|.++.|++++|++|++|+||+++++|+++|+++|++||++|+++..+.++...+.+++..|.- T Consensus 364 ~p~~~~~~a~~~~kl~g~is~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 429 (429) T protein:vir:98 364 LPANLLEESQIAGNLAGIVSEETQVGVLSIVENPQKEIERKNSDKSTLISRQAGGLNGQNTTTILE 429 (429) T ss_pred CCcCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC Confidence 999999999999999999999999999999999999999999999876554444433333322222 No 31 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=100.00 E-value=4.6e-90 Score=510.37 Aligned_cols=452 Identities=20% Similarity=0.306 Sum_probs=379.1 Q ss_pred CCcccCcHHHHHHHH------------hccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccc Q lcl|Aclame:pro 2 LNIYISETDLIKVQL------------KKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDD 69 (479) Q Consensus 2 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~ 69 (479) |++|+|.+=...+.. ...+...+.++|+++. .++.++|+++.+||+|+|+.+..+... .... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~yY~g~~~~i~~~~~~-----~~~~ 74 (481) T protein:vir:10 1 MTVYTINNINTKFSPLANDDFVVSDLAELLKEENLRNFISRHQ-TEQVPRLEMLESYYLNRNTDILAGERR-----LQKY 74 (481) T ss_pred CeeEeeehhchhcccccCceeeeecchhhcCHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcccccCccc-----cccc Confidence 899988743333211 2333444555555543 346678999999999998665433221 1233 Q ss_pred cccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHH-HhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCce Q lcl|Aclame:pro 70 FTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDL-LGEEFDDTITELYLNASNKGVEWLHPYINRKGEF 148 (479) Q Consensus 70 ~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~-~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~ 148 (479) ..++++|+++||++.||++.++|++|+|++++++++..++.++.+ ..|+|+..+.++++.++++|++|+++|.+++|++ T Consensus 75 ~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~~~~d~dg~~ 154 (481) T protein:vir:10 75 GDKADHRAVHNYAKYVSRFIVGYLTGNPITITHQDNQTNDKIIELNDLNDADEVNSDLALNLSIYGRAYEIVYRDFEDRD 154 (481) T ss_pred cccccceeecchHHHHHHHHHhhhccCCceEecCChhHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCeE Confidence 456788999999999999999999999999999988888777665 5689999999999999999999999999999999 Q ss_pred EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccc Q lcl|Aclame:pro 149 KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHF 228 (479) Q Consensus 149 ~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (479) ++++++|++++++||+....++.+++++|+..+.+++.+.++++|+++.+++|...++++ . T Consensus 155 ~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~-------------------~ 215 (481) T protein:vir:10 155 TFKVLDPKSTFVVYDQTLDKKVVAGVRYFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTY-------------------H 215 (481) T ss_pred EEEEEcccceEEEEcCCCCCceEEEEEEEEEeeCCCceEEEEEEEecCeEEEEEecCCce-------------------e Confidence 999999999999999988888999999999888888889999999999999998766543 3 Q ss_pred ccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhccccee Q lcl|Aclame:pro 229 RINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIK 308 (479) Q Consensus 229 ~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~ 308 (479) .++..+|+||.||||+|.|+..|+|+|+++++|+|+||+++|++++.+++++.|+++++|..+.+.+. .......+.+. T Consensus 216 ~~~~~~~~~g~vPvv~~~n~~~g~~~~~~v~~lida~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 294 (481) T protein:vir:10 216 RVEEVEHYYNDVPIIEYLNDQFKQGDFENVIALIDLYDSAQSDTANYMTDLNDAMLAIIGNVDLDSED-AKAFRDANMIH 294 (481) T ss_pred ecccccccCCceeEEEeecCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCcCCCccc-hhhhhhcccee Confidence 45678999999999999999999999999999999999999999999999999999999865444332 22333333322 Q ss_pred c---------CCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 V---------DGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKF 378 (479) Q Consensus 309 ~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~ 378 (479) + .++++++|++++++.++++++++++++.|+.+|++|+++++.+ ||+||+|+++++++|.+||.++++.| T Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~ 374 (481) T protein:vir:10 295 LEPGTNANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYTNTPDLNDEQFSGVQSGESMKYKLFGLEQVRAIKERLF 374 (481) T ss_pred ccccccccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 2 3457899999999999999999999999999999999988765 78999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 379 KKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQE 458 (479) Q Consensus 379 ~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~ 458 (479) +.+|++++++++++++..+..+.+..+++++|++++|+|.++.++++++++|++|+||+++++|+++|+++|++||++|+ T Consensus 375 ~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~~~~~~~~a~~~~kl~g~is~et~~~~l~~i~d~~~E~~ri~~E~ 454 (481) T protein:vir:10 375 KKGLMKRYKLLLNNVNLTGLKQHNYAELTITFTPNLPKSMMESINAFNALSGGVSESTRLSLLDFIDNPKEELEKMQEEE 454 (481) T ss_pred HHHHHHHHHHHHHHHhccCCCccccceeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHH Confidence 99999999999999999888888889999999999999999999999999999999999999999999999999999998 Q ss_pred HHHHhhhhcc----CCCCCCCcCCC Q lcl|Aclame:pro 459 DTQKEYDDLI----PNNQDGVIDET 479 (479) Q Consensus 459 ~~~~~~~~~~----~~~~~~~~det 479 (479) ++..+..+.. ...+++..|++ T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~dd~ 479 (481) T protein:vir:10 455 AQREKQADKRGYGEAFENHLNVDDS 479 (481) T ss_pred HHHHhhhhhccCCccCCCCCCCCCC Confidence 7665443322 22233444555 No 32 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=100.00 E-value=2.6e-90 Score=511.69 Aligned_cols=451 Identities=21% Similarity=0.271 Sum_probs=370.9 Q ss_pred CC---------------Cc-ccCcHHHHHHHHhccChHHHHHHHHHHHHHhh---HHHHHHHHHHhccCCcccccccccc Q lcl|Aclame:pro 1 ML---------------NI-YISETDLIKVQLKKESTINLVKVIEHYILKHR---PEKYKQGEEYYYGNTDVNNKRRYYL 61 (479) Q Consensus 1 ~~---------------~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~yy~g~~~~~~~~~~~~ 61 (479) |- .+ |...+..+........+.+..+.|.++|..|+ .+||+++.+||+|+|+.+.++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~r~~~l~~yY~g~~~~i~~~~--- 77 (501) T protein:vir:27 1 MEQTLFTDSTGQDLVLNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLQFG--- 77 (501) T ss_pred CCceeEEeccchhhhhhcccChhHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccC--- Confidence 21 11 23445666666666666666667777766653 5689999999999864433221 Q ss_pred cccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchh----HHHHHH-HHHhcCHHHHHHHHHHHHHhCCeE Q lcl|Aclame:pro 62 LDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDN----LTKLLN-DLLGEEFDDTITELYLNASNKGVE 136 (479) Q Consensus 62 ~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~----~~~~~~-~~~~n~~~~~~~~~~~~~~~~G~~ 136 (479) ......++++|+++||++.||++.++||+|+||+++++++. ..+.++ .|..|+|+..+.++++.+++||++ T Consensus 78 ----~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a 153 (501) T protein:vir:27 78 ----RRKDREMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDNDNNSQNDDTIKRIGRINDIDSHNRTLIRDLSQTGRA 153 (501) T ss_pred ----ccCccccccceeccchHHHHHHHHhhhhcccCeeEecCCccchHHHHHHHHHHHHhcChhHHHHHHHHHHhhCCeE Confidence 12445678899999999999999999999999999987643 445555 456799999999999999999999 Q ss_pred EEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccc Q lcl|Aclame:pro 137 WLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDE 216 (479) Q Consensus 137 ~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~ 216 (479) |++||++++|++++++++|.+++|+||+...+++++++++|.....++ .+.++++||++++++|...++. T Consensus 154 ~~~vy~ded~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~-~~~~~~vyt~~~v~~~~~~~~~--------- 223 (501) T protein:vir:27 154 YEVIYRNEYDETRIKRLNPLETFVIYDNSLEDNSIAAVRYYNRGTLQN-AKDVVEIYTNEHIYTLDASDDF--------- 223 (501) T ss_pred EEEEEeCCCCceEEEEEccceeEEEecCCCCCceEEEEEEEEeeecCC-cEEEEEEEeCCeEEEEEeCCce--------- Confidence 999999999999999999999999999988888999999998765544 5678999999999998765432 Q ss_pred ccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh Q lcl|Aclame:pro 217 YGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE 296 (479) Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~ 296 (479) ..++..+|+||.||||+|+|++.|+|+|+++++|||+||.++|++++.++++++|+++++|....+.++ T Consensus 224 -----------~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~ 292 (501) T protein:vir:27 224 -----------NEISVTTHAFGTVPITEFLNNVDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGM 292 (501) T ss_pred -----------eeccccccCCCcccEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCccc Confidence 334678999999999999999999999999999999999999999999999999999999987776666 Q ss_pred HHHHhhcccceecC---------CCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHH Q lcl|Aclame:pro 297 FIDNIRYYKSIKVD---------GGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSL 366 (479) Q Consensus 297 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~ 366 (479) ....++..+.+.+. ++++++|++++.+.++++.++++|++.|+.+|++|+++++.+ ||+||+||++++++ T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~ 372 (501) T protein:vir:27 293 QASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNIPDMSDTNFSGNTSGEALKYKLFG 372 (501) T ss_pred chhhhhhcCceeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHHHHHHHHhCCcccCccccccCchHHHHHHHHHH Confidence 66666655555442 345799999999999999999999999999999999998875 78999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCC Q lcl|Aclame:pro 367 LDLKCSKTEKKFKKAIRELLWFVCEYLKISGN-KSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVE 445 (479) Q Consensus 367 l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~-~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~ 445 (479) +.+|+..+++.|+++|++++++|+++++..+. .+.+..+++++|++++|.|.++.|+++++++|++|+||+++++|+++ T Consensus 373 l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~v~f~~~~p~n~~e~ad~~~kl~g~iS~et~l~~l~~v~ 452 (501) T protein:vir:27 373 LDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLNEQVSILTGLGGQVSQETALSLSGLVE 452 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCCcCHHHHHHHHHHHhccCcHHHHHHhCCCCC Confidence 99999999999999999999999999987654 46677889999999999999999999999999999999999999999 Q ss_pred CHHHHHHHHHHHHHHHH-hhhhccCCCC-CCCcCCC Q lcl|Aclame:pro 446 DVNDELERLKKQEDTQK-EYDDLIPNNQ-DGVIDET 479 (479) Q Consensus 446 d~~~El~~i~~E~~~~~-~~~~~~~~~~-~~~~det 479 (479) ||++|++||++|+++.. .......+.. +...|+. T Consensus 453 D~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~d~~ 488 (501) T protein:vir:27 453 SPNEELDKINKEVSEIDFKGYSNDFNEHVGKYTDEV 488 (501) T ss_pred CHHHHHHHHHHHHHhhhHhhhcCccccccccccCCC Confidence 99999999999876422 1111111111 1111111 No 33 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=100.00 E-value=4.7e-90 Score=510.34 Aligned_cols=450 Identities=20% Similarity=0.295 Sum_probs=368.1 Q ss_pred CCC----------------cc-cCcHHHHHHHHhccChHHHHHHHHHHHHHhh---HHHHHHHHHHhccCC-cccccccc Q lcl|Aclame:pro 1 MLN----------------IY-ISETDLIKVQLKKESTINLVKVIEHYILKHR---PEKYKQGEEYYYGNT-DVNNKRRY 59 (479) Q Consensus 1 ~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~yy~g~~-~~~~~~~~ 59 (479) ||- ++ ...+..+........+.+..++|.++|.+|+ .+||+++.+||+|+| ++.+++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~h~~~~~~rl~~l~~yY~g~~~~i~~~~~- 79 (502) T protein:vir:48 1 MMEQTLFTDSTGQDLVLNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLKSGR- 79 (502) T ss_pred CceeEEEEecchhHHHhhcccChhHHhhhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc- Confidence 432 22 1223444444555555555666777777654 468999999999985 4544322 Q ss_pred cccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchh----HHHHHHH-HHhcCHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 60 YLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDN----LTKLLND-LLGEEFDDTITELYLNASNKG 134 (479) Q Consensus 60 ~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~----~~~~~~~-~~~n~~~~~~~~~~~~~~~~G 134 (479) .....++++|+++||++.||++.++||+|+|++++++++. ..+.++. |..|+|+..+.++++++++|| T Consensus 80 -------~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G 152 (502) T protein:vir:48 80 -------RKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDNEDNSQNDDAIKRIGRINDIDTHNRNLIRDLSQTG 152 (502) T ss_pred -------ccccccccceeecchHHHHHHHHhhhhcccCeeEecCCccchhHHHHHHHHHHhhcCHhHHHHHHHHHHhhcC Confidence 2345678899999999999999999999999999886543 4445554 567999999999999999999 Q ss_pred eEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccc Q lcl|Aclame:pro 135 VEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLY 214 (479) Q Consensus 135 ~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~ 214 (479) ++|+++|.|++|++++++++|.+++|+||++...++++++|+|.....++ ...++++||++.+++|...++ T Consensus 153 ~a~~~v~~dedg~~~i~~~~p~~~~~vydd~~~~~~~~~ir~~~~~~~~~-~~~~~~iyt~~~i~~~~~~~~-------- 223 (502) T protein:vir:48 153 RAYEVIYRSEYDETRIKRLSPLETFVIYDNSLEDNSIAAVRYYNRGTLQN-AKDVVEIYTNQHIYTLDASDS-------- 223 (502) T ss_pred eEEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEEeecCC-cEEEEEEEeCCeEEEEEeCCc-------- Confidence 99999999999999999999999999999987788999999998765543 467899999999999875432 Q ss_pred ccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccch Q lcl|Aclame:pro 215 DEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSL 294 (479) Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~ 294 (479) +..+...+|+||.||||+|+|++.|+|+|++++++||+||.++|++++.+++++.|+++++|...... T Consensus 224 ------------~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~ 291 (502) T protein:vir:48 224 ------------FNEISVTPHAFGTVPITEFLNNADGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPQ 291 (502) T ss_pred ------------eeeccceecCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccccc Confidence 23456789999999999999999999999999999999999999999999999999999999876665 Q ss_pred hhHHHHhhcccceec---------CCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHH Q lcl|Aclame:pro 295 QEFIDNIRYYKSIKV---------DGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLY 364 (479) Q Consensus 295 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~ 364 (479) ++....++..+.+.+ .++++++|++++.+.+++++++++|.++|+.+|++|+++++.+ ||+||+||++++ T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~ 371 (502) T protein:vir:48 292 GMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVFTNTPDMSDNHFSGNASGEALKYKL 371 (502) T ss_pred ccchhhhhhcceeeccccccccccccCcceeEeeecCCHHHHHHHHHHHHHHHHHHhCCCCcCccccccCchHHHHHHHH Confidence 555555555555543 2457899999999999999999999999999999999988875 789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCC Q lcl|Aclame:pro 365 SLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGN-KSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPW 443 (479) Q Consensus 365 ~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~-~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~ 443 (479) +++.+|+..+++.|+++|++++++|+++++..+. .+.+..+++++|++++|+|.++.|+++++++|++|+||+++++|+ T Consensus 372 ~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl~g~iS~et~l~~l~~ 451 (502) T protein:vir:48 372 FGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESRLKITFTPNLPKSLYEQVSILNDLGGQVSQETALSLSGL 451 (502) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCCcCHHHHHHHHHHHhccCcHHHHHHhCCC Confidence 9999999999999999999999999999887654 466778899999999999999999999999999999999999999 Q ss_pred CCCHHHHHHHHHHHHHHHH-hhhhccCCC-CC--------CCcCCC Q lcl|Aclame:pro 444 VEDVNDELERLKKQEDTQK-EYDDLIPNN-QD--------GVIDET 479 (479) Q Consensus 444 ~~d~~~El~~i~~E~~~~~-~~~~~~~~~-~~--------~~~det 479 (479) ++|+++|++||++|+++.. ........+ .+ +..||+ T Consensus 452 v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~~e~~~~~~ 497 (502) T protein:vir:48 452 VENPTEELDKINEESSKIDFKGYPSYFYDNVGKYTDEVKETHTDDF 497 (502) T ss_pred CCCHHHHHHHHHHHHHhhhhhcccccccccccccCCCccCCCCcCc Confidence 9999999999999876422 121111111 11 122222 No 34 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=100.00 E-value=1.1e-89 Score=508.19 Aligned_cols=453 Identities=17% Similarity=0.216 Sum_probs=375.6 Q ss_pred CC---CcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCccee Q lcl|Aclame:pro 1 ML---NIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA 77 (479) Q Consensus 1 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri 77 (479) |. +-|...+-.+.......+...+.++|+++..+ +.+||+++.+||+|+|+++.++... .....++++|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~li~~~~~~-~~~r~~~l~~YY~g~~~~i~~~~~~------~~~~~~~~~ki 73 (506) T protein:vir:94 1 MDYDLTEHKQANLIYQESLENLTPNKIMKFITHHFNY-QRPRLEMLDDYYQGYNLKILDKQSR------RHEDGKADHRA 73 (506) T ss_pred CCcchhhhhcceeecccchhcCCHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccccccc------cccccCCccee Confidence 32 12222222334455677788889999887665 4568999999999999776544322 23445688999 Q ss_pred ecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccc Q lcl|Aclame:pro 78 INNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAE 156 (479) Q Consensus 78 ~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~ 156 (479) ++||++.||++.++||+|+|++++++++..++.++.|+ .|+++..+.++++.++++|++|++||+|++|.+++++++|+ T Consensus 74 ~~n~~~~Iv~~~~~~l~G~p~~~~~~d~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~ded~~~~i~~~~p~ 153 (506) T protein:vir:94 74 THSFAKYIADFQTSYSVGNPINVKLPDDGSNSGFDTFNKANDVDAENYDLFLDMSRYGRAYEYVYRGEDNEEHLAKLDPL 153 (506) T ss_pred ecchHHHHHHHhhhhhcccCceeecCcchHHHHHHHHHhccCHhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEccc Confidence 99999999999999999999999999998888888765 68999999999999999999999999999999999999999 Q ss_pred eeEEEEcCCCCCceEEEEEEEeeecccCc----eEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccc Q lcl|Aclame:pro 157 EAIPIWDSKRQRELVAFIRFYYIEDIDGN----KIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINN 232 (479) Q Consensus 157 ~~~~~~d~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479) +++|+||+....+++++|++|.....++. ...+.++|+++.+++|.....+ +..... T Consensus 154 ~~~~v~dd~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~~~~~~~~-------------------~~~~~~ 214 (506) T protein:vir:94 154 DTFVIYSTDVDPKPIMAVRYHQIELVDDNQVSTINYVPETWTADTYTLYNPTPIM-------------------GKMQVD 214 (506) T ss_pred ceEEEecCCCCCceEEEEEEEeeeeccCCceeEEEEEEEEEeCceEEEeccccCc-------------------cceecc Confidence 99999999887889999999987765543 3456788999998888655433 233456 Q ss_pred ccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccc------------------- Q lcl|Aclame:pro 233 KEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTS------------------- 293 (479) Q Consensus 233 ~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~------------------- 293 (479) .+|+||.||||+|.|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|..... T Consensus 215 ~~~~~g~vPvv~~~n~~~~~sd~e~~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 294 (506) T protein:vir:94 215 TTKPITTFPVVEFKNSNFRLGDFENVLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMA 294 (506) T ss_pred ccccCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccccchhcccccccccccccc Confidence 7899999999999999999999999999999999999999999999999999999864322 Q ss_pred -----hhhHHHHhhcccceecCC---------CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHH Q lcl|Aclame:pro 294 -----LQEFIDNIRYYKSIKVDG---------GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGV 358 (479) Q Consensus 294 -----~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~ 358 (479) ..++...++.++++.+++ +++++|++++.+.+++++++++|.+.|+.+|++|+++++.+ ||+||+ T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~ 374 (506) T protein:vir:94 295 KLAKDKLELIKEMKDANMLLLKSGMTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTDENFASNSSGV 374 (506) T ss_pred ccccchhHHHhhhhhcCeeeecccccccCccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCccccccccccccchHH Confidence 122334455556665543 45899999999999999999999999999999999988765 789999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHH Q lcl|Aclame:pro 359 ALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGN-KSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETI 437 (479) Q Consensus 359 Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~-~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~ 437 (479) |+++++.++.+||.++++.|+++|++++++|+.+++..++ .+.+..+++|+|++++|.|.++.|+++++++|++|+||+ T Consensus 375 Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl~g~iS~et~ 454 (506) T protein:vir:94 375 AMQYKVLGTVELASTKRRMFERGLYARYQIISDIENSIHGDWTFDPQELTFTFRDNLPADNISQIKALVQAGATLPQKYL 454 (506) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHH Confidence 9999999999999999999999999999999999987544 567788999999999999999999999999999999999 Q ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHhhhhccC-CC----CCCCcCCC Q lcl|Aclame:pro 438 VSNHPWVEDVNDELERLKKQEDTQKEYDDLIP-NN----QDGVIDET 479 (479) Q Consensus 438 ~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~-~~----~~~~~det 479 (479) ++++|+++|+++|++||++|+++.....+... .. .++..+|+ T Consensus 455 ~~~lp~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (506) T protein:vir:94 455 YQQLPGVTNPQDIVDMMKEQSANGDYSFDQNGVISNDGQTNTTATQT 501 (506) T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHhhcchhhcCCCcccCcccccccc Confidence 99999999999999999999876544332222 22 22333444 No 35 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=100.00 E-value=3.6e-89 Score=505.49 Aligned_cols=450 Identities=21% Similarity=0.304 Sum_probs=366.3 Q ss_pred CC---------------Ccc-cCcHHHHHHHHhccChHHHHHHHHHHHHHhh---HHHHHHHHHHhccCC-ccccccccc Q lcl|Aclame:pro 1 ML---------------NIY-ISETDLIKVQLKKESTINLVKVIEHYILKHR---PEKYKQGEEYYYGNT-DVNNKRRYY 60 (479) Q Consensus 1 ~~---------------~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~yy~g~~-~~~~~~~~~ 60 (479) |- .++ ..-+..+..........+..+.|.++|..|+ .+||+++.+||.|+| .+..+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~r~~~~~~yY~g~~~~i~~~~~-- 78 (501) T protein:vir:96 1 MEQTLFTDSTGQERVLNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLKSGR-- 78 (501) T ss_pred CceeeeeecccceeccccccchhHHhhhcccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCccc-- Confidence 21 111 1224444444444545555566666666553 458999999999985 4443322 Q ss_pred ccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCch----hHHHHHHH-HHhcCHHHHHHHHHHHHHhCCe Q lcl|Aclame:pro 61 LLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDD----NLTKLLND-LLGEEFDDTITELYLNASNKGV 135 (479) Q Consensus 61 ~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~----~~~~~~~~-~~~n~~~~~~~~~~~~~~~~G~ 135 (479) .....++++|+++||++.||++.++||+|+|++++++++ ...+.++. |..|+|+..+.++++.+++||+ T Consensus 79 ------~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~ 152 (501) T protein:vir:96 79 ------RKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDNDDNSQNDDAIKRIGRINDLDSLNRTLIRDLSQTGR 152 (501) T ss_pred ------cCccccccceeecchHHHHHHHHhhhhcccCeeEeeCCccchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCe Confidence 234467889999999999999999999999999987653 34455554 5678999999999999999999 Q ss_pred EEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccc Q lcl|Aclame:pro 136 EWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYD 215 (479) Q Consensus 136 ~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~ 215 (479) +|+++|+|++|.+++++++|++++|+||+...+++.+++++|+....++ ...++++||++.+++|...++. T Consensus 153 a~~~v~~dedg~~~i~~~~p~~~~~v~d~~~~~~~~~~v~~~~~~~~~~-~~~~~~vyt~~~i~~~~~~~~~-------- 223 (501) T protein:vir:96 153 AYEVIYRSEYDETRIKRLSPLETFVIYDNSLEDNSIAAVRYYNRGTLQS-AKDVVEIYTDEHIYTLDASDDF-------- 223 (501) T ss_pred EEEEEEEcCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeecCCC-cEEEEEEEcCCcEEEEeeCCCc-------- Confidence 9999999999999999999999999999988889999999998765544 4678999999999998755432 Q ss_pred cccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchh Q lcl|Aclame:pro 216 EYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQ 295 (479) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~ 295 (479) ..+...+|+||+||||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|....+.+ T Consensus 224 ------------~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~G~~~~~~~ 291 (501) T protein:vir:96 224 ------------NEISVTTHAFGTVPITEYLNNIDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKG 291 (501) T ss_pred ------------eeccccccCCCccceEEecCCccCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecccccCcc Confidence 33466889999999999999999999999999999999999999999999999999999998777666 Q ss_pred hHHHHhhcccceecC---------CCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHH Q lcl|Aclame:pro 296 EFIDNIRYYKSIKVD---------GGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYS 365 (479) Q Consensus 296 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~ 365 (479) +....++..+++.++ .+++++|++++.+.++++.++++|++.|+.+|++|+++++.+ ||+||+||+++++ T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~ 371 (501) T protein:vir:96 292 MQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNTPDMSDTNFSGNTSGEALKYKLF 371 (501) T ss_pred cchhhhhhcCeeeecccccccccccCcceeeEeccCCHHHHHHHHHHHHHHHHHHhCCcccCcccccccchHHHHHHHHH Confidence 665666666655442 345789999999999999999999999999999999998875 7899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCC Q lcl|Aclame:pro 366 LLDLKCSKTEKKFKKAIRELLWFVCEYLKISGN-KSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWV 444 (479) Q Consensus 366 ~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~-~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~ 444 (479) ++.+|+..+++.|+.+|++++++|+++++..+. .+.+..+++|+|++++|.|.++.++++++++|++|+||+++++|++ T Consensus 372 ~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~n~~e~ad~~~kl~g~iS~et~~~~l~~v 451 (501) T protein:vir:96 372 GLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLNEQVSILTGLGGQVSQETALSLSGLV 451 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeCCCCCcCHHHHHHHHHHHhccCchHHHHHhCCCC Confidence 999999999999999999999999999887654 4567788999999999999999999999999999999999999999 Q ss_pred CCHHHHHHHHHHHHHHHHhh---hhc---cCCCCC----CCcCCC Q lcl|Aclame:pro 445 EDVNDELERLKKQEDTQKEY---DDL---IPNNQD----GVIDET 479 (479) Q Consensus 445 ~d~~~El~~i~~E~~~~~~~---~~~---~~~~~~----~~~det 479 (479) +|+++|++||++|+++.... .+. .....+ ..+||. T Consensus 452 ~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~ 496 (501) T protein:vir:96 452 ESPNEELDKINKEMSEIDFKGYSNDFNEHVGKYTDEVKETHTDDF 496 (501) T ss_pred CCHHHHHHHHHHHHHHhhccccccchhhcccccCCcCCCCCCCcc Confidence 99999999999998753211 111 111111 111111 No 36 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=100.00 E-value=2.7e-89 Score=506.12 Aligned_cols=439 Identities=20% Similarity=0.229 Sum_probs=365.4 Q ss_pred CCcccCcHHHHHHHH-hccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 2 LNIYISETDLIKVQL-KKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) || .-++..|.+.. ...+...|.++|+++. .+.+||+++.+||+|+|++++++. ....++++|+++| T Consensus 1 ~~--~~~~~~~~~~~~~~~~~~~i~~~i~~~~--~~~~r~~~~~~yy~g~~~i~~~~~---------~~~~~~~~ki~~n 67 (453) T protein:vir:73 1 MN--LKPIKLMTYSRDEEITDKVVNDFMKKHQ--EEVERYEYLGNMYKGIMEISSQKA---------KDSWKPDNRLTNN 67 (453) T ss_pred Cc--cccceeeeccccccCCHHHHHHHHHHHH--HHHHHHHHHHHHhccccchhcCCC---------CCccCccceeecc Confidence 11 12233444443 3444556667776653 356899999999999999987543 2345788999999 Q ss_pred hHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeE Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAI 159 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~ 159 (479) |++.||++.++||+|+|++++++++..++.++.|+ .|+|+..+.++++++++||++|+++|++++|.+++++++|.+++ T Consensus 68 ~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~ 147 (453) T protein:vir:73 68 FAKYIVDTFVGYFNGIPIKKTHDDKSVLEAMQLFDNLNDMEDEESELAKIACVYGRAYELMYQNESTESEVIYCSPLNVF 147 (453) T ss_pred hHHHHHHHhhhhhcccCceeecCChHHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceE Confidence 99999999999999999999999999988898775 58999999999999999999999999999999999999999999 Q ss_pred EEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 160 PIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGK 239 (479) Q Consensus 160 ~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 239 (479) ++|++....++.++++++... ....++++|+++++++|...++. +..++..+|+||. T Consensus 148 ~v~dd~~~~~~~~~i~~~~~~----~~~~~~~vyt~~~i~~~~~~~~~-------------------~~~~~~~~~~~g~ 204 (453) T protein:vir:73 148 MVYDDSIKQKPLFAVYYGFDE----EGNLSGTVYTLLETISITGKAGE-------------------VKFGESTYNVYSD 204 (453) T ss_pred EEEeCCCCceeEEEEEEEEec----CceEEEEEEeCCeEEEEEecCCc-------------------eEEccceeccCCc Confidence 999998888889888876532 23457999999999998865543 2345678899999 Q ss_pred cceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhccccee----------- Q lcl|Aclame:pro 240 VPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIK----------- 308 (479) Q Consensus 240 vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~----------- 308 (479) ||||+|+|++.|+|+|+++++|+|+||+++|++++.++++++|+++++|+...+ +...+.+..+.+. T Consensus 205 vPvv~~~n~~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 282 (453) T protein:vir:73 205 LPIVEYNFNEERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQYLVFLGAEVDE--EDAKNIKDNRLINFFDKNSNGQGT 282 (453) T ss_pred eeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCCCc--hhhhcccccccccccccccccccc Confidence 999999999999999999999999999999999999999999999999985443 2222332222222 Q ss_pred cCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 VDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWF 388 (479) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~l 388 (479) .+.+++++|++++.+.++++++++.+++.|+.+|++|++++..+||+||+|++++++++.+||+++++.|+.+|++++++ T Consensus 283 ~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~l 362 (453) T protein:vir:73 283 NAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAANISDENFGNSSGVALAYKLQAMSNLALSFQRKFQSALNRRYSL 362 (453) T ss_pred cccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 23457799999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhcc Q lcl|Aclame:pro 389 VCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLI 468 (479) Q Consensus 389 i~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~ 468 (479) ++.+++..+. ..+..+++++|++++|.|.++.+++++|++|++|+||+++++|+++|+++|++||++|+++.....+.. T Consensus 363 i~~~~~~~~~-~~~~~~i~v~f~~~~p~~~~~~a~~~~k~~giis~et~~~~~~~~~d~~~E~~ri~~E~~~~~~~~~~~ 441 (453) T protein:vir:73 363 WSSLSTNASN-KDAWKDIEYTFTRNEPKDIKEQAETANILKGITSEETALSVISVIPDVQAEMEKIKKKKLLQLSLTRTS 441 (453) T ss_pred HHHHHhccCC-ccccccceEEeCCCCCCCHHHHHHHHHHHhccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhc Confidence 9998876544 557788999999999999999999999999999999999999999999999999999988765544432 Q ss_pred -CCCCCCCcCCC Q lcl|Aclame:pro 469 -PNNQDGVIDET 479 (479) Q Consensus 469 -~~~~~~~~det 479 (479) ....++..++= T Consensus 442 ~~~~~~~~~~~~ 453 (453) T protein:vir:73 442 NLVRMKQMRGNL 453 (453) T ss_pred cCCcchhhhcCC Confidence 11111111111 No 37 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=100.00 E-value=2e-88 Score=501.38 Aligned_cols=423 Identities=17% Similarity=0.214 Sum_probs=355.2 Q ss_pred HHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchh Q lcl|Aclame:pro 27 VIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDN 106 (479) Q Consensus 27 ~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~ 106 (479) +|.+++.+ +.+||+++.+||+|+|++++++... ....++++|+++||++.||++.++||+|+|++++++++. T Consensus 1 ~~~~~~~~-~~~r~~~l~~yy~g~~~~~~~~~~~-------~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~~ 72 (440) T protein:vir:95 1 MLAAFLGS-QKQRLAILASYAQGDNFSILSGHRR-------LDDEKADYRVRHKWGGYISSFATGYVIGNPVSIGVMEGG 72 (440) T ss_pred ChhhHHHH-HHHHHHHHHHHhccCCccccccccc-------ccccCCcceeecchHHHHHHhhhhheeccCceEeeCCCc Confidence 66666654 5678999999999999987655322 344567899999999999999999999999999876543 Q ss_pred H---HHHH-HHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecc Q lcl|Aclame:pro 107 L---TKLL-NDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDI 182 (479) Q Consensus 107 ~---~~~~-~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~ 182 (479) . ...+ +.|+.|+|+..+.++++++++||++|+++|+|++|+|++++++|++++|+||+...+++++++++|...+ T Consensus 73 ~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~- 151 (440) T protein:vir:95 73 SADQLSTIKDIEWQNDINALNSDLAFDASVYGRAYEYHFRDKDKVDRVVLISPLEMFVIRDLTVEQNIIAAVHLPIYAD- 151 (440) T ss_pred cHHHHHHHHHHHHhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEecC- Confidence 3 2334 4466799999999999999999999999999999999999999999999999988888999999887543 Q ss_pred cCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHH Q lcl|Aclame:pro 183 DGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLI 262 (479) Q Consensus 183 ~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~li 262 (479) ..++++|+++++++|...+.+. .++..++..+|+||.||||+|.|++.|+|+|+++++|| T Consensus 152 ----~~~~~vyt~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~li 211 (440) T protein:vir:95 152 ----KVNMTVYTKDKVITYKPYSNNS----------------VRLVVDDVKKHSYNDVPVVEWWNNRFRMGDYESEISLI 211 (440) T ss_pred ----ceEEEEEeCCeEEEEEEecCCc----------------cceeecceeeccCceeeEEEeeCCCCCCCchhhhHHHH Confidence 2468999999999987654332 23445677899999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhccceeeeecCCccc--hhhHHHHhhccccee---------cCCCCcceeeecCCCHHHHHHHH Q lcl|Aclame:pro 263 DIYDNNISTLADNLDEIQEVIYVLKEYPGTS--LQEFIDNIRYYKSIK---------VDGGGGVDKLEINIPVEAKKELL 331 (479) Q Consensus 263 d~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 331 (479) |+||.++|++++.++++++|+++++|..... .++....++....+. ..++++++|++++++.++++.++ T Consensus 212 da~~~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~ 291 (440) T protein:vir:95 212 DAYDAGQSDTANYMSDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFLKTGISTTGQQTTADASYIYKQYDVNGTEAYK 291 (440) T ss_pred HHHHHHHHHHHHHHHHhhcceeeeecccccCCCCccchhhhhhccceecccccccccCCCCcceeEEeecCCHHHHHHHH Confidence 9999999999999999999999999963221 223333443333322 24567899999999999999999 Q ss_pred HHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEe Q lcl|Aclame:pro 332 DRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITF 410 (479) Q Consensus 332 ~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f 410 (479) +++++.|+.+|++|+++++.+ ||+||+|++++++++.+|+.++++.|+++|++++++++++++...+.+.+..+++++| T Consensus 292 ~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~v~i~f 371 (440) T protein:vir:95 292 NRLANDIHRFSRIPNLDDDRFNSTSSGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAINGPVIEANKLTFTF 371 (440) T ss_pred HHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccceEEe Confidence 999999999999999998875 6899999999999999999999999999999999999999998888888889999999 Q ss_pred CCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhh-hhccCCCCCCCcCCC Q lcl|Aclame:pro 411 NHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEY-DDLIPNNQDGVIDET 479 (479) Q Consensus 411 ~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~-~~~~~~~~~~~~det 479 (479) ++++|+|.++.|++++|++|++|+||+++++|+++ +++|++||++|+++.... .+..+..+++.+|+- T Consensus 372 ~~~~p~~~~~~ad~~~kl~g~iS~et~~~~l~~~d-~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~e 440 (440) T protein:vir:95 372 HPNIPQDVWTEIKAYIEAGGEISQETLMENASFTD-YKTEHSRILKQGGSSDLEIGQIVGDADVGQADTE 440 (440) T ss_pred CCCCCCCHHHHHHHHHHHhccCcHHHHHHhCCCCC-cHHHHHHHHHHHHHhhhhHHhhccCCCCCCcCCC Confidence 99999999999999999999999999999999985 567999999998765433 444443333322222 No 38 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=100.00 E-value=7e-88 Score=498.41 Aligned_cols=448 Identities=18% Similarity=0.202 Sum_probs=369.2 Q ss_pred CCC-----cccCcHHHHHHHHh-ccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLN-----IYISETDLIKVQLK-KESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |.. .|...++.+..+.. ......|.++|++|.. ++.+||+++++||+|+|++++++. ...+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~~~~~l~~Yy~g~~~i~~~~~----------~~~~~~ 69 (470) T protein:vir:99 1 MKDINYGRDKVTGNSSFIFPKGEKLTSNELLGFIAYNET-VLKPRYRENMKLYLGKHKILTAPE----------KETGAD 69 (470) T ss_pred CccccCCcccccCCceEEeCCCCCcCHHHHHHHHHHHHH-hhHHHHHHHHHHhccccccccCcc----------cccCCc Confidence 543 23445555544443 3334456666665543 245689999999999999987642 234678 Q ss_pred ceeecchHHHHHHHHHhhhhccCeeecCCch-h-HHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEE Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVFNADDD-N-LTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVI 152 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~-~-~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~ 152 (479) +|+++||++.||++.++||+|+|++++++++ . ...+++.|..|+|+..+.++++.+++||++|++||++++|++++++ T Consensus 70 ~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~~ 149 (470) T protein:vir:99 70 NRIVVNSAKYVVDVYNGYFCGIEPKLALLNDSSKIDEIARWNRQENFFDTINEISKQCDIFGRSIASIYQGEDARPHLMY 149 (470) T ss_pred ceeecchHHHHHHHHhhhhccCCeeEeeCCchhHHHHHHHHHHhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCeEEEEE Confidence 8999999999999999999999999988543 3 3455666778999999999999999999999999999999999999 Q ss_pred EccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccc Q lcl|Aclame:pro 153 IPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINN 232 (479) Q Consensus 153 ~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479) ++|++++|+||+....++.+++++|... .++....++.+|+++.+++|...+... .....+. T Consensus 150 ~~p~~~~~i~d~~~~~~~~~~vr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 211 (470) T protein:vir:99 150 SSPNHAFIIYDDTVQRQPLAFVHYQIDN-SNNWTDAYGVIQYADKFYKFKGYDIEE-----------------DTNAAGY 211 (470) T ss_pred EccceeEEEEcCCCCcceEEEEEEEEEe-cCCeeEEEEEEEecCeEEEEEeccccc-----------------ccccccc Confidence 9999999999998888899999988754 345567788999999999887654332 1233466 Q ss_pred ccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchh--hHHHHhhcccceec- Q lcl|Aclame:pro 233 KEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQ--EFIDNIRYYKSIKV- 309 (479) Q Consensus 233 ~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~--~~~~~~~~~~~~~~- 309 (479) .+|+||.||||+|+|+..|+|+|+++++|+|+||.++|++++.++++++|+++++|......+ +....+...+++.+ T Consensus 212 ~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~g~~~~~~~~g~~~~~~~~~~~~~~~ 291 (470) T protein:vir:99 212 AINPYGLVPAVEFFENEERQGIFDSIKTLINALDKVISQKANQVEYFDNAYMYMIGFKLPEDDEGNPKFDFKNNRVLYVS 291 (470) T ss_pred cccCCCccceEeecCCCCCCcchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccccccchhhhhhhcceeeec Confidence 789999999999999999999999999999999999999999999999999999997644322 33444555555544 Q ss_pred ----CCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 310 ----DGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRE 384 (479) Q Consensus 310 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~ 384 (479) ++++++++++++.+.+++++++++|++.|+.+|++|+++++.+ ||+||+||+++++++.+|+.++++.|+++|++ T Consensus 292 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~ 371 (470) T protein:vir:99 292 QLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMMAMVPNIQDKNFAGNSSGVALQYKLFAMKNKADSKERKFDKSLMQ 371 (470) T ss_pred CCCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCCccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3567899999999999999999999999999999999988875 78999999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 385 LLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEY 464 (479) Q Consensus 385 ~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~ 464 (479) ++++++.+++..+..+.+..+++++|++++|.|.++.++++++++|++|+||+++++|++ |+++|++||++|+++..+. T Consensus 372 ~~~li~~~~~~~~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~giis~et~l~~l~~v-d~~~E~eri~~E~~~~~~~ 450 (470) T protein:vir:99 372 LYRIVLATLFNNKQDQELWSELDFKFTRNLPEDMASAIDNAKNAEGIVSKKTQLGMIPDI-EPDAEMKQIAKEKADAIKQ 450 (470) T ss_pred HHHHHHHHHhccCCcccccccceEEeCCCCCcCHHHHHHHHHHHhccCCHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHH Confidence 999999999988777788889999999999999999999999999999999999999998 7999999999998765443 Q ss_pred hhccC-C----C-CCCCcCC Q lcl|Aclame:pro 465 DDLIP-N----N-QDGVIDE 478 (479) Q Consensus 465 ~~~~~-~----~-~~~~~de 478 (479) .+... . + +.+.+|| T Consensus 451 ~~~~~~~~d~~~~d~~~ee~ 470 (470) T protein:vir:99 451 TQQLSMPIDILKRDNNAEEE 470 (470) T ss_pred HHhhcCCCCcCCCCCCccCC Confidence 33222 1 1 1122222 No 39 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=100.00 E-value=1.6e-87 Score=496.45 Aligned_cols=449 Identities=21% Similarity=0.290 Sum_probs=374.9 Q ss_pred cCcHHHHHHHHhcc-ChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHH Q lcl|Aclame:pro 6 ISETDLIKVQLKKE-STINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKL 84 (479) Q Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ 84 (479) ...+|.+..+.... +..++.++|+++.. ++..||+++++||+|+|++++++.. ....++++|+++||++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~r~~~~~~yy~g~~~i~~~~~~--------~~~~~~~~ki~~n~~~~ 71 (489) T protein:vir:99 1 MLQEDFEAIDYESKLWIDQLKNYISRFKA-EQLERLKELKRYYLGDNNIKYRPAK--------TDKYAADNRIASDFAKY 71 (489) T ss_pred CCccceeeeCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCcccccccc--------ccccCCcceeecchHHH Confidence 45566666666544 57778899988754 4667899999999999999876542 23346778999999999 Q ss_pred HHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEe----CCCCceEEEEEccceeE Q lcl|Aclame:pro 85 LVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYI----NRKGEFKYVIIPAEEAI 159 (479) Q Consensus 85 iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~----d~~~~~~i~~~~p~~~~ 159 (479) ||++.++|+||+|++++++++..++.++.|+ .|+|+..+.++++.++++|++|+++|+ |++|++++.+++|.+++ T Consensus 72 iv~~~~~~l~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~~~i~~~~p~~~~ 151 (489) T protein:vir:99 72 ITVFEQGYMLGVPVEYKNENKDLQAAIDLMSVRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTEVKLYQLPAEQTF 151 (489) T ss_pred HHHHHhhhhccCCceeecCChhHHHHHHHHHhhcChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcceEEEEEcccceE Confidence 9999999999999999999999999888664 689999999999999999999999986 56788999999999999 Q ss_pred EEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 160 PIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGK 239 (479) Q Consensus 160 ~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 239 (479) ++|++....++.+++++|...+.+++...++++|+++.+++|....... .+.......+|+||. T Consensus 152 ~v~dd~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~----------------~~~~~~~~~~~~~g~ 215 (489) T protein:vir:99 152 VIYDDTYQRNSLMAVHFYDIDYGSGKRKQIIKAYTSDTIYTYEDYNLET----------------KGMRLKDYEGHFFKG 215 (489) T ss_pred EEEcCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEecCCCc----------------ccceecccccccCCc Confidence 9999888788999999999888888889999999999999987654321 223445678999999 Q ss_pred cceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh--HHH--------------Hhhc Q lcl|Aclame:pro 240 VPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE--FID--------------NIRY 303 (479) Q Consensus 240 vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~--~~~--------------~~~~ 303 (479) ||||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|......+. ... .... T Consensus 216 vPvv~~~n~~~~~s~~~~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (489) T protein:vir:99 216 VPVNEYANNEERTGAYESVLDNIDAYDLSQSELANFQQDSVNALLVIAGNAYTGADENDYLDDGRLNPNGRLAISIGFKK 295 (489) T ss_pred eeEEEeecCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccchhhhhhccccccccccccccccc Confidence 999999999999999999999999999999999999999999999999975333221 111 1122 Q ss_pred ccceecC-------CCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 YKSIKVD-------GGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTE 375 (479) Q Consensus 304 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~ 375 (479) ++++.+. .+++++|++++.+.+++++++++|.+.|+.+|++|+++...+ ||+||+|++++++++.+||.+++ T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~ 375 (489) T protein:vir:99 296 AQVLILDDNPNPNGVKPQAYFLKKEYDTAGSEAYKNRLVADILRFTFTPDTQDMKFSGVQSGESMKYKLMASDNYREKQE 375 (489) T ss_pred ceeeeeccccCccccccceeeeeecCChHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHH Confidence 2233322 245789999999999999999999999999999999987765 78999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC---ccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCC--CHHHH Q lcl|Aclame:pro 376 KKFKKAIRELLWFVCEYLKISGNK---SYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVE--DVNDE 450 (479) Q Consensus 376 ~~~~~~l~~~~~li~~~~~~~~~~---~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~--d~~~E 450 (479) +.|+.+|++++++|+.+++..+.. .....+++|+|++++|.|.++.++++++++|++|+||+++++|+++ |+++| T Consensus 376 ~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~~i~v~f~~~~p~d~~~~~~~~~kl~giis~et~~~~l~~v~~~d~~~E 455 (489) T protein:vir:99 376 RLFKKGLMRRLRLAANIWAIKGNEATTYSLVNDTSIVFTPNLPQNDNEIVTAAQNLYGIVSDQTIFEILNTVTGVDAEAE 455 (489) T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccccccccceEEeCCCCCcCHHHHHHHHHHHhccCCHHHHHHhcCCCCchhHHHH Confidence 999999999999999999876554 2335679999999999999999999999999999999999999987 78899 Q ss_pred HHHHHHHHHHHHhhhhccCCCC-CCCcCCC Q lcl|Aclame:pro 451 LERLKKQEDTQKEYDDLIPNNQ-DGVIDET 479 (479) Q Consensus 451 l~~i~~E~~~~~~~~~~~~~~~-~~~~det 479 (479) ++||++|++......+.....+ ++..+++ T Consensus 456 ~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 485 (489) T protein:vir:99 456 LKRLKEEADKKQSLPEPRLVGDASGQEEPT 485 (489) T ss_pred HHHHHHHHHHHhccccccccCCCCCCcCCC Confidence 9999999877665444333322 2333333 No 40 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=100.00 E-value=1.4e-86 Score=491.28 Aligned_cols=449 Identities=22% Similarity=0.292 Sum_probs=364.3 Q ss_pred CcHHHHHHHHhc--cChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCc---ccccccccc-----cccccccccccCcce Q lcl|Aclame:pro 7 SETDLIKVQLKK--ESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTD---VNNKRRYYL-----LDGAKVDDFTKVNNK 76 (479) Q Consensus 7 ~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~---~~~~~~~~~-----~~~~~~~~~~~~~~r 76 (479) |.+..+..++.. .+...|.+.|.++. ....|+..+.+||+|.++ +..++.... ..........++++| T Consensus 1 ~~~~~~~~~~~~~~~~~e~i~~~i~~~~--~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 78 (474) T protein:vir:10 1 MTLYKLIDDIEAQGILPKHIEALIESHK--DDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNK 78 (474) T ss_pred CchHHHHhhccccCCCHHHHHHHHHHhh--hhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccc Confidence 555555444433 33455555565542 246688999999998764 333221111 111123445678899 Q ss_pred eecchHHHHHHHHHhhhhccCeeecCC-----chhHHHHHHHH-HhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEE Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVFNAD-----DDNLTKLLNDL-LGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKY 150 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~~~~-----~~~~~~~~~~~-~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i 150 (479) +++||++.||++.++||+|+|++++++ ++...+.++.| ..|+++..+.++++.+++||++|+++|.+++|++++ T Consensus 79 i~~n~~~~ivd~~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~~ 158 (474) T protein:vir:10 79 LNNSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRI 158 (474) T ss_pred cccchHHHHHHhHhhheeccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCeeEE Confidence 999999999999999999999999874 35566777765 458999999999999999999999999999999999 Q ss_pred EEEccceeEEEEcCCCCCceEEEEEEEeeeccc-CceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccc Q lcl|Aclame:pro 151 VIIPAEEAIPIWDSKRQRELVAFIRFYYIEDID-GNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFR 229 (479) Q Consensus 151 ~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (479) ++++|++++|+||+. .++++++++|...+.. +..+.++++|++..++.|...+.. ++.. T Consensus 159 ~~i~p~~~~~v~d~~--~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~------------------~~~~ 218 (474) T protein:vir:10 159 KNIDPYNVIFVGDNI--LEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGID------------------ALQE 218 (474) T ss_pred EEEcccceEEEEcCC--CceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCC------------------cccc Confidence 999999999999875 3678899998877544 445678999999999998765432 2344 Q ss_pred cccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhccccee- Q lcl|Aclame:pro 230 INNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIK- 308 (479) Q Consensus 230 ~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~- 308 (479) ++..+|+||.||||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|+.+.+ +...++...+++. T Consensus 219 ~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~~~~~--~~~~~~~~~~~i~~ 296 (474) T protein:vir:10 219 VGRYEHLFDYNPLFGVPNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMGMSE--EMIQETQKSGAFEL 296 (474) T ss_pred cccccCCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCCCCc--hhhhhhhhcceeEe Confidence 5678999999999999999999999999999999999999999999999999999999986553 3344455555554 Q ss_pred cCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 VDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLW 387 (479) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~ 387 (479) .+++++++|++++.+.+++++++++|++.|+.+|++|+++++.+ ||+||+||+++++++.+||.++++.|+.+|+++++ T Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~ 376 (474) T protein:vir:10 297 FDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFK 376 (474) T ss_pred cCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 47789999999999999999999999999999999999988765 78999999999999999999999999999999999 Q ss_pred HHHHHHHhcCC--CccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 388 FVCEYLKISGN--KSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYD 465 (479) Q Consensus 388 li~~~~~~~~~--~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~ 465 (479) +|+++++..+. .+.++.++++.|++++|.|.++.|+++++++|++|+||+++++|+++|+++|++||++|+++..... T Consensus 377 li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~g~iS~et~~~~l~~v~d~~~E~eri~~E~~e~~~~~ 456 (474) T protein:vir:10 377 VILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLKGQVSERTRLGQSQLVDDVDYELDEMEKESLEFNDKL 456 (474) T ss_pred HHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhc Confidence 99999887654 3456778999999999999999999999999999999999999999999999999999987655443 Q ss_pred hccCC---CCCCCcCCC Q lcl|Aclame:pro 466 DLIPN---NQDGVIDET 479 (479) Q Consensus 466 ~~~~~---~~~~~~det 479 (479) ..... +..+.++|+ T Consensus 457 ~~~~~~~~~~~~~~~~s 473 (474) T protein:vir:10 457 PDIDEGDANDKSQNNQS 473 (474) T ss_pred ccccCCCcCCCCccccC Confidence 22221 122233333 No 41 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=100.00 E-value=1.4e-86 Score=491.28 Aligned_cols=449 Identities=22% Similarity=0.292 Sum_probs=364.3 Q ss_pred CcHHHHHHHHhc--cChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCc---ccccccccc-----cccccccccccCcce Q lcl|Aclame:pro 7 SETDLIKVQLKK--ESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTD---VNNKRRYYL-----LDGAKVDDFTKVNNK 76 (479) Q Consensus 7 ~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~---~~~~~~~~~-----~~~~~~~~~~~~~~r 76 (479) |.+..+..++.. .+...|.+.|.++. ....|+..+.+||+|.++ +..++.... ..........++++| T Consensus 1 ~~~~~~~~~~~~~~~~~e~i~~~i~~~~--~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 78 (474) T protein:vir:94 1 MTLYKLIDDIEAQGILPKHIEALIESHK--DDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNK 78 (474) T ss_pred CchHHHHhhccccCCCHHHHHHHHHHhh--hhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccc Confidence 555555444433 33455555565542 246688999999998764 333221111 111123445678899 Q ss_pred eecchHHHHHHHHHhhhhccCeeecCC-----chhHHHHHHHH-HhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEE Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVFNAD-----DDNLTKLLNDL-LGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKY 150 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~~~~-----~~~~~~~~~~~-~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i 150 (479) +++||++.||++.++||+|+|++++++ ++...+.++.| ..|+++..+.++++.+++||++|+++|.+++|++++ T Consensus 79 i~~n~~~~ivd~~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~~ 158 (474) T protein:vir:94 79 LNNSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRI 158 (474) T ss_pred cccchHHHHHHhHhhheeccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCeeEE Confidence 999999999999999999999999874 35566777765 458999999999999999999999999999999999 Q ss_pred EEEccceeEEEEcCCCCCceEEEEEEEeeeccc-CceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccc Q lcl|Aclame:pro 151 VIIPAEEAIPIWDSKRQRELVAFIRFYYIEDID-GNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFR 229 (479) Q Consensus 151 ~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (479) ++++|++++|+||+. .++++++++|...+.. +..+.++++|++..++.|...+.. ++.. T Consensus 159 ~~i~p~~~~~v~d~~--~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~------------------~~~~ 218 (474) T protein:vir:94 159 KNIDPYNVIFVGDNI--LEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGID------------------ALQE 218 (474) T ss_pred EEEcccceEEEEcCC--CceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCC------------------cccc Confidence 999999999999875 3678899998877544 445678999999999998765432 2344 Q ss_pred cccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhccccee- Q lcl|Aclame:pro 230 INNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIK- 308 (479) Q Consensus 230 ~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~- 308 (479) ++..+|+||.||||+|+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|+.+.+ +...++...+++. T Consensus 219 ~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~~~~~--~~~~~~~~~~~i~~ 296 (474) T protein:vir:94 219 VGRYEHLFDYNPLFGVPNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMGMSE--EMIQETQKSGAFEL 296 (474) T ss_pred cccccCCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCCCCc--hhhhhhhhcceeEe Confidence 5678999999999999999999999999999999999999999999999999999999986553 3344455555554 Q ss_pred cCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 VDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLW 387 (479) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~ 387 (479) .+++++++|++++.+.+++++++++|++.|+.+|++|+++++.+ ||+||+||+++++++.+||.++++.|+.+|+++++ T Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~ 376 (474) T protein:vir:94 297 FDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFK 376 (474) T ss_pred cCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 47789999999999999999999999999999999999988765 78999999999999999999999999999999999 Q ss_pred HHHHHHHhcCC--CccccceeeEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 388 FVCEYLKISGN--KSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYD 465 (479) Q Consensus 388 li~~~~~~~~~--~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~ 465 (479) +|+++++..+. .+.++.++++.|++++|.|.++.|+++++++|++|+||+++++|+++|+++|++||++|+++..... T Consensus 377 li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~g~iS~et~~~~l~~v~d~~~E~eri~~E~~e~~~~~ 456 (474) T protein:vir:94 377 VILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLKGQVSERTRLGQSQLVDDVDYELDEMEKESLEFNDKL 456 (474) T ss_pred HHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhc Confidence 99999887654 3456778999999999999999999999999999999999999999999999999999987655443 Q ss_pred hccCC---CCCCCcCCC Q lcl|Aclame:pro 466 DLIPN---NQDGVIDET 479 (479) Q Consensus 466 ~~~~~---~~~~~~det 479 (479) ..... +..+.++|+ T Consensus 457 ~~~~~~~~~~~~~~~~s 473 (474) T protein:vir:94 457 PDIDEGDANDKSQNNQS 473 (474) T ss_pred ccccCCCcCCCCccccC Confidence 22221 122233333 No 42 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=100.00 E-value=2.2e-73 Score=418.91 Aligned_cols=433 Identities=13% Similarity=0.099 Sum_probs=323.4 Q ss_pred ccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccC Q lcl|Aclame:pro 18 KESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNP 97 (479) Q Consensus 18 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~ 97 (479) ..+..++++.+...+.. +..|++++.+||+|+|++++.... .+....++|+++||+++||++.++||++++ T Consensus 1 ~~t~~d~i~~L~~~~~~-~~~r~~~~~~Yy~G~~~i~~~~~~--------~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g 71 (480) T protein:vir:78 1 MTTYHEHVERLQGLLAR-DLPNLLEAEAYRNGTRRLKTIGIG--------APPELAYLDVQPGWVATYLRTLSDRLDIEG 71 (480) T ss_pred CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhcccc--------cchhhhhhhhhcchHHHHHHHHHhhhccCc Confidence 33344444444433333 467899999999999987654332 223334678899999999999999999999 Q ss_pred eeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEe------CCCCceEEEEEccceeEEEEcCCCCCceE Q lcl|Aclame:pro 98 IVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYI------NRKGEFKYVIIPAEEAIPIWDSKRQRELV 171 (479) Q Consensus 98 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~------d~~~~~~i~~~~p~~~~~~~d~~~~~~~~ 171 (479) ++...+++....+++.|..|+|+..+.++++++++||++|++||. |++|.+++++++|.+++++||+...+++. T Consensus 72 ~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~~i~~~~p~~~~~i~D~~~~~~~~ 151 (480) T protein:vir:78 72 FRISEDSEGLEELWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIPLIRVESPLYMYAELDPRNTRRVT 151 (480) T ss_pred eecCCCchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCeeEEEEEcccceEEEEcCCCccceE Confidence 987555444455556667899999999999999999999999986 46789999999999999999998888999 Q ss_pred EEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCC-- Q lcl|Aclame:pro 172 AFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE-- 249 (479) Q Consensus 172 ~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~-- 249 (479) +++++|...+ +++.+.++++|+++.+++|...++..... ....+..+|+||+||||+|.|+. T Consensus 152 ~~i~~~~~~d-~~~~~~~~~~y~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~vPvv~f~n~~~~ 215 (480) T protein:vir:78 152 RAVRLYTTRD-DVAVPDRATLYLPDETVPLRRNGGLNDQW---------------VVDGDVIKHGLGVVPVVPLTNDPRL 215 (480) T ss_pred EEEEEEEeec-CCcceEEEEEEeCCeEEEEEecCCCcccc---------------cccccccccCCCCcceEEeeccccc Confidence 9999987554 44567889999999999998765432211 11235678999999999999874 Q ss_pred ---CCCchHHH-HHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH--HHHhh-cccceecCCCCcceeeecCC Q lcl|Aclame:pro 250 ---KCVSDLTF-YKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF--IDNIR-YYKSIKVDGGGGVDKLEINI 322 (479) Q Consensus 250 ---~g~s~~~~-v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~ 322 (479) .|+|+|+. |++|+|+||+++|++++.++++++|+++++|......... ...+. ....+...+++++++++++. T Consensus 216 ~~~~G~sdi~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (480) T protein:vir:78 216 GNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGENTTLDIYYGRILTLASEAAKISEFKA 295 (480) T ss_pred CCccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhCCCccccccccccchhhhhhhhhccCCCCCceEEecCc Confidence 58999985 9999999999999999999999999999998754322111 11111 11222333566788888664 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCcccccc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 323 PVEAKKELLDRLEKNIIIFGQGVNPESQNTG-----DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG 397 (479) Q Consensus 323 ~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-----~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~ 397 (479) . ..+.+++.++..|+.++.+++++...+| ++||+||++++.+|..||.++++.|+.+|++++++++.+.+. T Consensus 296 ~--~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~~-- 371 (480) T protein:vir:78 296 A--ELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGR-- 371 (480) T ss_pred c--CHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-- Confidence 3 3455666666666666666555444332 369999999999999999999999999999999999988653 Q ss_pred CCccccceeeEEeCCCCCCCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhh------hc Q lcl|Aclame:pro 398 NKSYDYKTVQITFNHSMIINEAEKIDMAAKST----GIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYD------DL 467 (479) Q Consensus 398 ~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~----g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~------~~ 467 (479) ....+...++++|+++.|+|..+.+++++|+. |++|++|+++++|+++|+.+||+++++++++..... +. T Consensus 372 ~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~ 451 (480) T protein:vir:78 372 EVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQ 451 (480) T ss_pred CccccceeeeEEecCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccCC Confidence 23456678999999999999999999999873 369999999999999888888888776655432111 11 Q ss_pred cCCCCCCCcCCC Q lcl|Aclame:pro 468 IPNNQDGVIDET 479 (479) Q Consensus 468 ~~~~~~~~~det 479 (479) .....++.+.++ T Consensus 452 ~~~~~~~~~~~~ 463 (480) T protein:vir:78 452 ADATPKPTVTET 463 (480) T ss_pred CccccCCCCCCC Confidence 111112222222 No 43 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=100.00 E-value=2.8e-73 Score=418.35 Aligned_cols=433 Identities=13% Similarity=0.100 Sum_probs=324.0 Q ss_pred ccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccC Q lcl|Aclame:pro 18 KESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNP 97 (479) Q Consensus 18 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~ 97 (479) ..+..++++.+.....+ +..|+.++.+||+|+|++++.+.. .+....++|+++||+++||++.++||.+++ T Consensus 1 ~~t~~~~i~~L~~~~~~-~~~r~~~l~~Yy~G~~~i~~~~~~--------~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g 71 (480) T protein:vir:78 1 MTTYHEHVERLQGLLAR-DLPNLLEAEAYRNGTRRLKTIGIG--------APPELAYLDVQPGWVATYLRTLSDRLDIEG 71 (480) T ss_pred CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccccc--------cchhHhhhhhhcchHHHHHHHHHhhhccCc Confidence 33444444443333333 457899999999999987654332 233445678899999999999999999999 Q ss_pred eeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEe------CCCCceEEEEEccceeEEEEcCCCCCceE Q lcl|Aclame:pro 98 IVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYI------NRKGEFKYVIIPAEEAIPIWDSKRQRELV 171 (479) Q Consensus 98 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~------d~~~~~~i~~~~p~~~~~~~d~~~~~~~~ 171 (479) +++..+++....+++.|..|+|+..+.++++++++||++|++||. |++|.+++.+++|.+++++||+...+++. T Consensus 72 ~~~~~d~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~~i~~~~p~~~~~~~D~~~~~~~~ 151 (480) T protein:vir:78 72 FRISEDSEGLEELWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIPLIRVESPLYMYAELDPRNTRRVT 151 (480) T ss_pred eecCCCchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCeeEEEEEcccceEEEEcCCCccceE Confidence 987665555556666677899999999999999999999999996 45788999999999999999998888999 Q ss_pred EEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCC-- Q lcl|Aclame:pro 172 AFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE-- 249 (479) Q Consensus 172 ~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~-- 249 (479) +++++|...+ +.+.+.++++|+++.+++|...++..... ....+..+|+||+||||+|.|+. T Consensus 152 ~~i~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~vPvv~f~n~~~~ 215 (480) T protein:vir:78 152 RAVRLYTTRD-DVAVPDRATLYLPDETVPLRRNGGLNDQW---------------VVDGDVIKHGLGVVPVVPLTNDPRL 215 (480) T ss_pred EEEEEEEeec-CCCceEEEEEEeCCeEEEEEecCCCcccc---------------ccccccccCCCCCcceEEeeccccc Confidence 9999987554 34567889999999999998765432111 11234578999999999999863 Q ss_pred ---CCCchHHH-HHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH--HHHhh-cccceecCCCCcceeeecCC Q lcl|Aclame:pro 250 ---KCVSDLTF-YKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF--IDNIR-YYKSIKVDGGGGVDKLEINI 322 (479) Q Consensus 250 ---~g~s~~~~-v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~ 322 (479) .|+|+|+. |++|+|+||+++|++++.++++++|++++.|.+....... ...+. ....+...+++++++++++. T Consensus 216 ~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (480) T protein:vir:78 216 GNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGENTTLDIYYGRILTLASEAAKISEFKA 295 (480) T ss_pred CCccCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcCCccccccccccchhhhhhhhhccCCCCCceEEecCc Confidence 68999985 9999999999999999999999999999998754332211 11111 12223334567788888764 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCcccccc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 323 PVEAKKELLDRLEKNIIIFGQGVNPESQNTG-----DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG 397 (479) Q Consensus 323 ~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-----~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~ 397 (479) . ..+.+++.++..|+.++..++++...+| ++||+||++++.+|..||.++++.|+.+|++++++++.+.+. T Consensus 296 ~--~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Alk~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~g~-- 371 (480) T protein:vir:78 296 A--ELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGR-- 371 (480) T ss_pred c--CHHHHHHHHHHHHHHHhcccCCChHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-- Confidence 3 3556666666766666665555544332 369999999999999999999999999999999999988763 Q ss_pred CCccccceeeEEeCCCCCCCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHh--hhhc---- Q lcl|Aclame:pro 398 NKSYDYKTVQITFNHSMIINEAEKIDMAAKST----GIVSDETIVSNHPWVEDVNDELERLKKQEDTQKE--YDDL---- 467 (479) Q Consensus 398 ~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~----g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~--~~~~---- 467 (479) ....+...+++.|+++.++|..+.+++++|+. |++|++|+++++|+++|+.++|+++++|++++.- .... T Consensus 372 ~~~~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~ 451 (480) T protein:vir:78 372 EVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQ 451 (480) T ss_pred CccccceeeeEEecCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhcccccc Confidence 23445678999999999999999999999863 4799999999999998888888877666554321 1111 Q ss_pred cCCCCCCCcCCC Q lcl|Aclame:pro 468 IPNNQDGVIDET 479 (479) Q Consensus 468 ~~~~~~~~~det 479 (479) .....++.+.++ T Consensus 452 ~~~~~~~~~~~~ 463 (480) T protein:vir:78 452 ADATPKPTVTET 463 (480) T ss_pred CCCCCCCCCCCC Confidence 011111111112 No 44 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=100.00 E-value=9.2e-74 Score=421.00 Aligned_cols=438 Identities=13% Similarity=0.090 Sum_probs=328.9 Q ss_pred CCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecch Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNY 81 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~ 81 (479) |+.=+.- .........+++.+...+.. +..|++++.+||+|+|++++.+... +....+.++++|| T Consensus 1 ~~~~~~~------~~e~~~~~~~~~~l~~~~~~-~~~r~~~l~~YY~G~~~i~~~~~~~--------~~~~~~~~~v~n~ 65 (486) T protein:vir:42 1 MTAPLPG------MEEIEDPAVVREEMISAFED-ASKDLASNTSYYDAERRPEAIGVTV--------PREMQQLLAHVGY 65 (486) T ss_pred CCCCCCC------CCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCcchhccccc--------chhHhhhhhccch Confidence 1111110 01122222333333333333 3468899999999999887644322 2223455678999 Q ss_pred HHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCC--------CCceEEEEE Q lcl|Aclame:pro 82 HKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINR--------KGEFKYVII 153 (479) Q Consensus 82 ~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~--------~~~~~i~~~ 153 (479) +++||++.+++|...++++..+++....+++.|..|+|+..+.++++++++||++|++||.++ ++.++++++ T Consensus 66 ~~~iVd~~~~~l~~~g~~~~~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~ 145 (486) T protein:vir:42 66 PRLYVDSVAERQAVEGFRLGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVE 145 (486) T ss_pred HHHHHHHHHhhhcccceecCCCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEe Confidence 999999999999999998765555555677778889999999999999999999999999875 456799999 Q ss_pred ccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 154 PAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNK 233 (479) Q Consensus 154 ~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479) +|++++++||+.. +++.+++++|.. .+++.+.++++|+++.+++|....+.+. ..... T Consensus 146 ~p~~~~~i~d~~~-~~~~~~~~~~~~--~~~~~~~~~~~y~~~~~~~~~~~~~~~~-------------------~~~~~ 203 (486) T protein:vir:42 146 PPTRMHAEIDPRI-NRVSKAIRVAYD--KEGNEIQAATLYTPMETIGWFRADGEWA-------------------EWFNV 203 (486) T ss_pred cccceEEEEeCCC-CCeEEEEEEEEe--cCCCeEEEEEEEcCCcEEEEEecCCcEE-------------------eecce Confidence 9999999999865 578888988764 4566788899999999999987665432 33567 Q ss_pred cccccccceEEecCCC-----CCCchHH-HHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH----Hh-h Q lcl|Aclame:pro 234 EQGWGKVPFIPFKNNE-----KCVSDLT-FYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID----NI-R 302 (479) Q Consensus 234 ~~~~g~vPvv~~~n~~-----~g~s~~~-~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~----~~-~ 302 (479) +|+||+||||+|.|+. .|.|+|+ .|++|+|+||+++|++++.++++++|+++++|........... .. . T Consensus 204 ~h~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~ 283 (486) T protein:vir:42 204 PHGLGVVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDSETGQTLFDA 283 (486) T ss_pred ecCCCCceEEEeccccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhhcCCccccccccccccchhhh Confidence 8999999999999974 5899998 5899999999999999999999999999999875433211100 01 1 Q ss_pred cccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc-----cccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 303 YYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG-----DKSGVALKFLYSLLDLKCSKTEKK 377 (479) Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-----~~Sg~Ai~~~~~~l~~k~~~~~~~ 377 (479) ....+...+++++++.+++ ..+.+.++++++..|+.++..++++...+| ++||+||++++.+|.+|++++++. T Consensus 284 ~~~~~~~~~~~~~~~~q~~--~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~ 361 (486) T protein:vir:42 284 YLARILAFEDAEGKIQQFS--AAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNLM 361 (486) T ss_pred hhchhcccCCCCceEEeec--ccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHH Confidence 1122333456778887654 446788999999999999888887765543 269999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHH Q lcl|Aclame:pro 378 FKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKST----GIVSDETIVSNHPWVEDVNDELER 453 (479) Q Consensus 378 ~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~----g~is~et~~~~l~~~~d~~~El~~ 453 (479) |+.+|++++++++.+.+... ...+..++++.|+++.|+|.++.+++++|++ |++|++++++++|+++|+.+||+| T Consensus 362 f~~~l~~~~~l~~~~~~~~~-~~~d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~lg~~~d~~~e~~~ 440 (486) T protein:vir:42 362 FGGAWEEAMRIAYRIMKGGD-VPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARIDMGYSVKEREEMRR 440 (486) T ss_pred HHHHHHHHHHHHHHHhcCCC-ccccceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhcCCCChhHHHHHHH Confidence 99999999999988766432 3446678999999999999999999999975 789999999999999999999999 Q ss_pred HHHHHHHHHhh-hhccCCC---C--CCCcCCC Q lcl|Aclame:pro 454 LKKQEDTQKEY-DDLIPNN---Q--DGVIDET 479 (479) Q Consensus 454 i~~E~~~~~~~-~~~~~~~---~--~~~~det 479 (479) +++|+++.... .+.+.+. . .+.++++ T Consensus 441 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (486) T protein:vir:42 441 WDEEEAAMGLGLLGTMVDADPTVPGSPSPTAP 472 (486) T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC Confidence 98887654322 1211111 1 1111111 No 45 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=100.00 E-value=5.4e-73 Score=416.80 Aligned_cols=438 Identities=14% Similarity=0.133 Sum_probs=326.7 Q ss_pred CCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecch Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNY 81 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~ 81 (479) |+.=+...+... ..+..+-+++.++. .+.+|++++.+||+|+|++++.+.. .+...+++++++|| T Consensus 1 ~~~~i~~~~~~~-----~~~~~~~~L~~~~~--~~~~r~~~~~~YY~G~~~i~~~~~~--------~~~~~~~~~~~~n~ 65 (485) T protein:vir:24 1 MTAPLPGQEEIA-----DPAIARDEMVSAFE--DQNQNLRSNTSYYEAERRPEAIGVT--------VPVQMQSLLAHVGY 65 (485) T ss_pred CCCCCCCCCccc-----chHHHHHHHHHHHH--HHHHHHHHHHHHHhccCchhhcCcc--------cchhhhhhhhccch Confidence 211111111110 11222223344332 2457899999999999988654432 22334567888999 Q ss_pred HHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCC--------CceEEEEE Q lcl|Aclame:pro 82 HKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRK--------GEFKYVII 153 (479) Q Consensus 82 ~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~--------~~~~i~~~ 153 (479) +++||++.++||+++|+++..+++....+.+.|..|+|+..+.++++++++||++|++||.+++ +.++|+++ T Consensus 66 ~~~ivd~~~~~l~~~g~~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~ 145 (485) T protein:vir:24 66 PRLYVDSIAERQAVEGFRLGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVE 145 (485) T ss_pred HHHHHHHHhhhhccCceecCCCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEe Confidence 9999999999999999986554554555666777899999999999999999999999999875 55789999 Q ss_pred ccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 154 PAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNK 233 (479) Q Consensus 154 ~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479) +|++++++||+... ++.++++.|.. .+++...++++|+++.+++|...++.+. ..... T Consensus 146 ~p~~~~~i~D~~~~-~~~~~~~~~~~--~~~~~~~~~~~y~~~~~~~~~~~~~~~~-------------------~~~~~ 203 (485) T protein:vir:24 146 PPTRMYAEIDPRIG-RPAKAIRVAYD--AEGNEIQAATLYTPNETFGWFRAEGEWV-------------------EWFSD 203 (485) T ss_pred ccceeEEEeeCCcC-ceeEEEEEEEe--ecCCeEEEEEEEcCCcEEEEEecCCceE-------------------eeccc Confidence 99999999998764 56767766653 3456678899999999999987665432 23567 Q ss_pred cccccccceEEecCCC-----CCCchHH-HHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH----HHHh-h Q lcl|Aclame:pro 234 EQGWGKVPFIPFKNNE-----KCVSDLT-FYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF----IDNI-R 302 (479) Q Consensus 234 ~~~~g~vPvv~~~n~~-----~g~s~~~-~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~----~~~~-~ 302 (479) +|+||.||||+|.|+. +|.|+|+ .+++|+|+||+++|++++.++++++|++++.|......... ...+ . T Consensus 204 ~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~ 283 (485) T protein:vir:24 204 PHGLGAVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPETGQTLFDA 283 (485) T ss_pred ccCCCcccEEEeccCcccCCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhccCCccccccccccccchhhh Confidence 8999999999999874 5899998 59999999999999999999999999999998754322111 0011 1 Q ss_pred cccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc-----cccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 303 YYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG-----DKSGVALKFLYSLLDLKCSKTEKK 377 (479) Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-----~~Sg~Ai~~~~~~l~~k~~~~~~~ 377 (479) ....+...+++++++.+.+ ..+++.++++++..|+.+++.|+++...+| ++||+||++++.+|.+||+++++. T Consensus 284 ~~~~i~~~~~~~~~~~q~~--~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~ 361 (485) T protein:vir:24 284 YLARILAFEDAEGKIQQFS--AAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNAI 361 (485) T ss_pred cccceeccCCCCceEEeec--ccchHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHH Confidence 1222334455677876654 456788999999999999988887765543 369999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHH Q lcl|Aclame:pro 378 FKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKST----GIVSDETIVSNHPWVEDVNDELER 453 (479) Q Consensus 378 ~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~----g~is~et~~~~l~~~~d~~~El~~ 453 (479) |+++|++++++++.+.+. .....+...++++|+++.|+|.++.+++++|++ |++|++|+++++|++.|+.+||++ T Consensus 362 f~~~l~~~~~l~~~~~~~-~~~~~d~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l~~~~d~~~e~~~ 440 (485) T protein:vir:24 362 FGGAWEEAMRLAYRLMKG-GDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKDMGYSIAEREEMRR 440 (485) T ss_pred HHHHHHHHHHHHHHHhcC-CCCccccceeeEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhhCCCCHhHHHHHHH Confidence 999999999999987664 334567789999999999999999999999974 589999999999999888889999 Q ss_pred HHHHHHHHHh-hhhccCC---CCCCCcCCC Q lcl|Aclame:pro 454 LKKQEDTQKE-YDDLIPN---NQDGVIDET 479 (479) Q Consensus 454 i~~E~~~~~~-~~~~~~~---~~~~~~det 479 (479) +++|++++.. ..+.+.+ ...+.+++| T Consensus 441 ~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485) T protein:vir:24 441 WDEEEAAMGLGLLGTMVDADPTVPGSPNPT 470 (485) T ss_pred HHHHHhhhhhhHHHhhcccCCCCCCCCCCC Confidence 9888765321 1111111 111222222 No 46 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=100.00 E-value=8.6e-73 Score=415.68 Aligned_cols=423 Identities=12% Similarity=0.066 Sum_probs=318.2 Q ss_pred HhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhc Q lcl|Aclame:pro 16 LKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVG 95 (479) Q Consensus 16 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g 95 (479) +......++..++. .+.+ +..|++++.+||+|+|+++..+.. .+...+++|+++||+++||++.++++.+ T Consensus 1 ~~~~~~~~i~~l~~-~~~~-~~~r~~~l~~Yy~G~~~i~~~~~~--------~~~~~~~~k~~~n~~~~ivd~~~~~l~~ 70 (441) T protein:vir:80 1 MNSDELALIEGMYD-RIQR-LSSWHCCIEGYYEGSNRVRDLGVA--------IPPELQRVQTVVSWPGIAVDALEERLDW 70 (441) T ss_pred CCccHHHHHHHHHH-HHHH-HHHHHHHHHHHHhcCCcchhcCcc--------cchhhhhhhhhcchHHHHHHHHHhhhcc Confidence 11112222333333 2333 346899999999999987654332 2334457889999999999999999998 Q ss_pred cCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEE Q lcl|Aclame:pro 96 NPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIR 175 (479) Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~ 175 (479) .+++. +++ ..+...|..|+|+..+.++++++++||++|++||.|++|.+++++++|.+++++||+.......++++ T Consensus 71 ~g~~~-~d~---~~l~~i~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~~~ 146 (441) T protein:vir:80 71 LGWTN-GDG---YGLDGVYAANRLATASCDVHLDALIFGLSFVAIIPHGDGTVSVRPQSPKNCTGKFSADGSRLDAGLVV 146 (441) T ss_pred ccccC-CCh---HHHHHHHHhcCHHHHHHHHHHHHhhcCeeEEEEEeCCCCceEEEEEccceEEEEEeCCCCceeEEEEE Confidence 88763 222 23455567799999999999999999999999999999999999999999999999876655555444 Q ss_pred EEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCC-----C Q lcl|Aclame:pro 176 FYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE-----K 250 (479) Q Consensus 176 ~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~-----~ 250 (479) ++. . .....++++|+++.+++|...+.+. +..++..+|+||+||||+|.|+. + T Consensus 147 ~~~-~---~~~~~~~~vy~~~~~~~~~~~~~~~------------------~~~~~~~~~~~g~vPvv~~~n~~~~~~~~ 204 (441) T protein:vir:80 147 QQT-C---DPEVVEAELLLPDVIVQVERRGSRE------------------WVEVDRIPNVLGAVPLVPIVNRRRTSRID 204 (441) T ss_pred EEE-e---cCceEEEEEEecCeEEEEEEcCCcc------------------eeeccccccCCCceeEEEeeccccCCccC Confidence 443 2 2345678999999999987765432 33456789999999999999875 4 Q ss_pred CCchHH-HHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCc---ceeeecCCCHHH Q lcl|Aclame:pro 251 CVSDLT-FYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGG---VDKLEINIPVEA 326 (479) Q Consensus 251 g~s~~~-~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 326 (479) |+|+|. ++++|+|+||.++|++++.++++++|+++++|...............++++.++.+++ +++.+ .+.++ T Consensus 205 G~s~l~~~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~ 282 (441) T protein:vir:80 205 GRSEITRSIRAYTDEAVRTLLGQSVNRDFYAYPQRWVTGVSADEFSQPGWVLSMASVWAVDKDDDGDTPNVGS--FPVNS 282 (441) T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHhhcCceeeeecCCccccccchhhhcccccccCCCCCCCCcceeEe--cCccc Confidence 899986 5999999999999999999999999999999986555444444555566676665443 45544 44456 Q ss_pred HHHHHHHHHHHHHHHhCCCCCccccc---c--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc Q lcl|Aclame:pro 327 KKELLDRLEKNIIIFGQGVNPESQNT---G--DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSY 401 (479) Q Consensus 327 ~~~~~~~l~~~i~~~s~~~~~~~~~~---g--~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~ 401 (479) .+.++++++..|+.++.+++++...+ + ++||+|+++++.+|.+||.++++.|+++|++++++++.+++....... T Consensus 283 ~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~ 362 (441) T protein:vir:80 283 PTPYSDQMRLLAQLTAGEAAVPERYFGFITSNPPSGEALAAEESRLVKRAERRQTSFGQGWLSVGFLAAKALDSRVDEAD 362 (441) T ss_pred hHHHHHHHHHHHHHHhcccCCCHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc Confidence 67777888888888877766654433 2 259999999999999999999999999999999999999887766666 Q ss_pred ccceeeEEeCCCCCCCHHHHHHHHHHHh--cc--CChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCcC Q lcl|Aclame:pro 402 DYKTVQITFNHSMIINEAEKIDMAAKST--GI--VSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVID 477 (479) Q Consensus 402 ~~~~i~i~f~~~~p~d~~e~a~~~~k~~--g~--is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~d 477 (479) ...+++++|+++.|+|.++.+++++|+. |+ +|++++++++|+++ +|++++++|++++.+.............| T Consensus 363 ~~~~i~~~f~~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~~~~l~~~~---~e~~~~~~e~~e~~~~~~~~~~~~~~~~~ 439 (441) T protein:vir:80 363 FFGDVGLRWRDASTPTRAATADAVTKLVGAGILPADSRTVLEMLGLDD---VQVEAVMRHRAESSDPLAVLAGAISRQTN 439 (441) T ss_pred cceeeeEEeCCCCCcCHHHHHHHHHHHHhcCcccccHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHhhhhhcccc Confidence 6788999999999999999999999974 43 68899999999865 45556666655444433333333333333 Q ss_pred CC Q lcl|Aclame:pro 478 ET 479 (479) Q Consensus 478 et 479 (479) |= T Consensus 440 ~~ 441 (441) T protein:vir:80 440 EV 441 (441) T ss_pred cC Confidence 33 No 47 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=100.00 E-value=7.2e-73 Score=416.09 Aligned_cols=437 Identities=16% Similarity=0.115 Sum_probs=325.9 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |.-. |...........+++.+.+.... +.+|++++.+||+|+|++++.+... +....++++++| T Consensus 1 ~~~~-------i~~~~~~~~~~~~~~~l~~~~~~-~~~r~~~~~~Yy~G~~~i~~~~~~~--------~~~~~~~~~~~n 64 (485) T protein:vir:10 1 MTAP-------LPGQEEIEDPAIARDEMVSAFED-STQNLKTNTSYYEAERRPEAIGVTV--------PIQMQSLLAHVG 64 (485) T ss_pred CCCC-------CCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcchhcCCCC--------ChhhhhhhhhcC Confidence 2222 22222233344445444444444 4468999999999999886644322 222345567889 Q ss_pred hHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCC--------CCceEEEE Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINR--------KGEFKYVI 152 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~--------~~~~~i~~ 152 (479) |+++||++.++||++++++...+++....+++.|..|+|+..+.++++.+++||+||++||.++ ++.++|++ T Consensus 65 ~~~~ivd~~~~~l~~~g~~~~~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~ 144 (485) T protein:vir:10 65 YPRLYVDSIAERQAVEGFRFGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRV 144 (485) T ss_pred cHHHHHHHHHhhhcccceecCCCchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEE Confidence 9999999999999999988655555455566777889999999999999999999999999985 46788999 Q ss_pred EccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccc Q lcl|Aclame:pro 153 IPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINN 232 (479) Q Consensus 153 ~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479) ++|++++++||+... ++.+++++|.. .+++...++++|+++.+++|...++.+ ..... T Consensus 145 ~~p~~~~~~~D~~~~-~~~~~~~~~~~--~~~~~~~~~~~y~~~~~~~~~~~~~~~-------------------~~~~~ 202 (485) T protein:vir:10 145 EPPTRMYAEIDPRIG-RVSKAIRVAYD--AEGNEIQAATLYTPNDIFGWYRVENEW-------------------QEWFN 202 (485) T ss_pred EccceeEEEEcCCCC-ceeEEEEEEEe--eCCCeEEEEEEEeCCeEEEEEEcCCce-------------------EEecc Confidence 999999999998654 46666666553 345667889999999999998765543 23356 Q ss_pred ccccccccceEEecCCC-----CCCchHH-HHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH------HHH Q lcl|Aclame:pro 233 KEQGWGKVPFIPFKNNE-----KCVSDLT-FYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF------IDN 300 (479) Q Consensus 233 ~~~~~g~vPvv~~~n~~-----~g~s~~~-~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~------~~~ 300 (479) .+|+||+||||+|.|+. +|+|+|+ ++++|+|+||+++|++++.++++++|++++.|......... ... T Consensus 203 ~~~~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~ 282 (485) T protein:vir:10 203 NPHGLGVVPVVPIPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPETGQTLFD 282 (485) T ss_pred ccCCCCcccEEEeccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhcCCcccccccccccchhhh Confidence 78999999999999974 5899998 58999999999999999999999999999998754332110 011 Q ss_pred hhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc-----cccHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 301 IRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG-----DKSGVALKFLYSLLDLKCSKTE 375 (479) Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-----~~Sg~Ai~~~~~~l~~k~~~~~ 375 (479) ...+ .+...+++++++.+.+. .+.+.++++++..|+.++..++++...+| ++||+||++++.+|.+|+++++ T Consensus 283 ~~~~-~i~~~~~~d~k~~q~~~--~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~k~ 359 (485) T protein:vir:10 283 AYLA-RILAFEDAEGKIQQFSA--AELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKN 359 (485) T ss_pred hccc-ceeccCCCCceEEeecc--cchHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHH Confidence 1122 23344567888877653 45677888888888888777666544432 3799999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHH Q lcl|Aclame:pro 376 KKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKST----GIVSDETIVSNHPWVEDVNDEL 451 (479) Q Consensus 376 ~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~----g~is~et~~~~l~~~~d~~~El 451 (479) +.|+.+|++++++++.+.+. .....+...+++.|+++.|+|.++.+++++|+. |++|++++++++|++.+..+|+ T Consensus 360 ~~f~~~l~~~~~l~~~~~~~-~~~~~~~~~i~v~w~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~~lg~~~~~~~~~ 438 (485) T protein:vir:10 360 SIFGGAWEEAMRLAYRMMKG-GDVPPDMLRMETVWRDPSTPTYAAKADAASKLYNGGTGVIPRERARKDMGYSIAEREEM 438 (485) T ss_pred HHHHHHHHHHHHHHHHHhCC-CCCcccceeeeEEecCCCCCCHHHHHHHHHHHHhccccCCCHHHHHHhCCCCHhHHHHH Confidence 99999999999999887654 333456678999999999999999999999983 4899999999999988888899 Q ss_pred HHHHHHHHHHHh-hhhccCCCCCCCcCCC Q lcl|Aclame:pro 452 ERLKKQEDTQKE-YDDLIPNNQDGVIDET 479 (479) Q Consensus 452 ~~i~~E~~~~~~-~~~~~~~~~~~~~det 479 (479) +++++|++++.. ..+.+.+...+..+++ T Consensus 439 ~~~~ee~~~~~~~~~~~~~~~~~~~~~~~ 467 (485) T protein:vir:10 439 RRWDEEEAAMGLGLIGTMVDPNPTVPGSP 467 (485) T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCC Confidence 999887765432 2222222222211111 No 48 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=100.00 E-value=5.6e-73 Score=416.71 Aligned_cols=436 Identities=13% Similarity=0.098 Sum_probs=333.8 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQ 88 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~ 88 (479) |..........++..+++.+.+++.+++ +|++++.+||+|+|++.+.+... +....+.++++||+++||++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~rl~~l~~Yy~G~~~i~~~~~~~--------~~~~~~~~~~~n~~~~ivd~ 71 (484) T protein:vir:77 1 MTSPLQKQENVDPEKAREEMLNLFTERT-QDLGDNTAYYESERRPDAVGVTV--------PQQMQKLLAHVGYPRLYIDA 71 (484) T ss_pred CCCcccccCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhccccc--------chhHHhhhhhcCcHHHHHHH Confidence 3333333456667778888877777654 57899999999999876543322 22333456789999999999 Q ss_pred HHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCc--------eEEEEEccceeEE Q lcl|Aclame:pro 89 KVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGE--------FKYVIIPAEEAIP 160 (479) Q Consensus 89 ~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~--------~~i~~~~p~~~~~ 160 (479) .+++|+++|+++..+++....+++.|..|+|+..+.++++++++||++|++||.+++|. ++|++++|.++++ T Consensus 72 ~~~~l~~~g~~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~ 151 (484) T protein:vir:77 72 IAARQELEGFRLGGADKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIRVEPPTNLYA 151 (484) T ss_pred HHhhhccCceecCCcchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEEEeccceeEE Confidence 99999999998766555556677778889999999999999999999999999998864 5799999999999 Q ss_pred EEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 161 IWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKV 240 (479) Q Consensus 161 ~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 240 (479) +||+. .+++.+++++|... ++..+.++++|+++.+++|....+.+ ...+..+|+||+| T Consensus 152 ~~D~~-~~~~~~a~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~-------------------~~~~~~~~~~g~v 209 (484) T protein:vir:77 152 QIDPR-TRQVMRAIRAIEDE--EGNEVIGATLYLPNNTVIWNREDGQW-------------------VQVANVAHNLEMV 209 (484) T ss_pred EecCC-CCceEEEEEEEEee--cCCcEEEEEEEecCeEEEEEecCCce-------------------EeeccccCCCCCc Confidence 99986 46788999887653 34567788999999998887665443 3345678999999 Q ss_pred ceEEecCCC-----CCCchHH-HHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHH------HHhhccccee Q lcl|Aclame:pro 241 PFIPFKNNE-----KCVSDLT-FYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFI------DNIRYYKSIK 308 (479) Q Consensus 241 Pvv~~~n~~-----~g~s~~~-~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~------~~~~~~~~~~ 308 (479) |||+|.|+. .|+|+|+ .|++|+|+||+++|++++.++++++|++++.|.......... .....+. +. T Consensus 210 Pvv~f~N~~~~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~ 288 (484) T protein:vir:77 210 PVIPIPNRTRLSDLYGTTEITPELRSVTDAAARTLMLMQATAELMGVPQRLLFGVKGEELGVDPETGQTLFDAYLAR-IL 288 (484) T ss_pred ceEEeccccccCccCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCCCcchhcccccccchhhhhhhhh-hc Confidence 999999864 5899997 599999999999999999999999999999987543321110 0111122 22 Q ss_pred cCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 VDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG-----DKSGVALKFLYSLLDLKCSKTEKKFKKAIR 383 (479) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-----~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~ 383 (479) ..+++++++.+++ ..+.+.++++++..|+.++..++++...+| +.||+||++++.+|.+|++++++.|+++|+ T Consensus 289 ~~~~~~~~~~q~~--~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~ 366 (484) T protein:vir:77 289 AFEDHESKAQQFS--AAELRNFVDALDALDRKAAAYTGLPPYYLSFSSENPASAEAIRSSESRLVKTVERKNKIFGGAWE 366 (484) T ss_pred ccCCCCceeEeec--CCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3345677876655 445667888888888888877766554432 369999999999999999999999999999 Q ss_pred HHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 384 ELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKST----GIVSDETIVSNHPWVEDVNDELERLKKQED 459 (479) Q Consensus 384 ~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~----g~is~et~~~~l~~~~d~~~El~~i~~E~~ 459 (479) +++++++.+.+.. ....+..+++++|+++.|+|.++.+++++|++ |++|++|+++++|+++++.+||+++++|+. T Consensus 367 ~~~~l~~~~~~~~-~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~l~~~~~~~~e~~~~~~ee~ 445 (484) T protein:vir:77 367 QAMRVAYKVMNGG-DIPPEYYRMESIWRDPSTPTYAAKADAATKLYNNGQGVIPKERARIDMGYSITEREEMRKWDEEEQ 445 (484) T ss_pred HHHHHHHHHhCCC-CcccccccceEEecCCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhcCCCChhHHHHHHHHHHHHH Confidence 9999998876542 23446678999999999999999999999974 489999999999999998899999988876 Q ss_pred HHHh--hhhccC--CCCCCCcCCC Q lcl|Aclame:pro 460 TQKE--YDDLIP--NNQDGVIDET 479 (479) Q Consensus 460 ~~~~--~~~~~~--~~~~~~~det 479 (479) +... ...... .+..+.++.+ T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~ 469 (484) T protein:vir:77 446 AQGLGLMGTMFGTDPSGGGNPDNP 469 (484) T ss_pred HHHHHHHhhhccccccCCCCCCCC Confidence 5432 111111 1111222222 No 49 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=100.00 E-value=1.6e-72 Score=414.16 Aligned_cols=460 Identities=11% Similarity=0.022 Sum_probs=334.6 Q ss_pred ccCcHHHHHH--------HHhccChHHHHHHHHHHHHHh--hHHHHHHHHHHhccCCccccccccccccccccccccc-C Q lcl|Aclame:pro 5 YISETDLIKV--------QLKKESTINLVKVIEHYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTK-V 73 (479) Q Consensus 5 ~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~-~ 73 (479) +..+.+.|.. +-...+...+.+++.+++..+ +.+|++++.+||+|+|+++..+.... +..+ . T Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~~~~~~~~~rl~~l~~YY~G~~~~~~~~~~~~-------~~~~~~ 73 (501) T protein:vir:25 1 MTVPVDVIADAPAADVEFPEDSMSREQLGALVADMWRLHISERQWLDRIYEYTKGLRGRPEVPEGAS-------DEVKEL 73 (501) T ss_pred CcccchhhhccCcccccCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhccccCC-------hhhhhh Confidence 3444555543 334456677777777777665 56799999999999998765443221 1122 2 Q ss_pred cceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEE Q lcl|Aclame:pro 74 NNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVII 153 (479) Q Consensus 74 ~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~ 153 (479) +.++++||+++||++.+++++.++++.. +++....+++.|..|+|+..+.++++++++||++|++||.+++| ++|+++ T Consensus 74 ~~~~v~n~~~~ivd~~a~~l~~~gf~~~-d~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~de~~-~~i~~~ 151 (501) T protein:vir:25 74 AKLSVKNVLSLVRDSFAQNLSVVGYRNA-LAKENDPAWEMWQRNRMDARQAEVHRPALTYGASYVTVTPTDEG-PVFRTR 151 (501) T ss_pred HhhhhcChHHHHHHHHHhhhcccceecC-CccchHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCC-CeEEEe Confidence 3456789999999999999999998754 33334456667778999999999999999999999999999887 689999 Q ss_pred ccceeEEEEcC-CCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccc-cccc-cccccccccc Q lcl|Aclame:pro 154 PAEEAIPIWDS-KRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDE-YGKM-TDIQEGHFRI 230 (479) Q Consensus 154 ~p~~~~~~~d~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 230 (479) +|++++++|++ .....+.+++++|.... +.+...++++|+++.+++|............... .... .......... T Consensus 152 sp~~~~~iy~D~~~~~~~~~ai~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (501) T protein:vir:25 152 SPRQILAVYADPSVDAWPQYALETWVAQK-DAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEH 230 (501) T ss_pred ccccEEEEEecCCCCcceeEEEEEEeecc-ccCcceeEEEecCeeEEEEecCceeeeecccccccccccccccccccccc Confidence 99999999965 45556888898877544 3445568899999888877543321110000000 0000 0011112233 Q ss_pred ccccccccccceEEecCC----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccc Q lcl|Aclame:pro 231 NNKEQGWGKVPFIPFKNN----EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKS 306 (479) Q Consensus 231 ~~~~~~~g~vPvv~~~n~----~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~ 306 (479) ...+|+||.||||+|.|+ .+|+|+|+++++|+|+||+++|++++.++++++|++++.|+..+..+.+ +...+.+ T Consensus 231 ~~~~~~~~~vPiv~f~N~~~~~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~--~~~~~~i 308 (501) T protein:vir:25 231 GATFEGKPVCPVVRFVNGRDADDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVISGWTGSKAEVL--KASALRV 308 (501) T ss_pred ccccCCccceeeEeccCccccCccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHhCCCCCccchh--hhcccce Confidence 456899999999999994 5689999999999999999999999999999999999999876654433 3344444 Q ss_pred eecCCCCcceeeecCC-CHHHHHHHHHHHHHHHHHHhCCCCCcccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 307 IKVDGGGGVDKLEINI-PVEAKKELLDRLEKNIIIFGQGVNPESQN-TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRE 384 (479) Q Consensus 307 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~s~~~~~~~~~-~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~ 384 (479) +.+ +++++++.+++. +.+.+.++++.+...|+..+.+|+..+++ .+|+||+||++++.+|.+++.++++.|+.+|++ T Consensus 309 ~~~-~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~N~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~ 387 (501) T protein:vir:25 309 WTF-EDPEVKAQAFPPASVEPYNLILEEMLQHVAMVAQISPAQVTGKMINVSAEALAAAEANQQRKLAAKRESFGESWEQ 387 (501) T ss_pred ecc-CCCCceEEEecccChHHHHHHHHHHHHHHHhhcCCChhhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 444 456788887663 45677778888888888888888887775 478999999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhcc-CChHHHHHhCCCCCCHHH-HHHHHHHHHHHHH Q lcl|Aclame:pro 385 LLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGI-VSDETIVSNHPWVEDVND-ELERLKKQEDTQK 462 (479) Q Consensus 385 ~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~-is~et~~~~l~~~~d~~~-El~~i~~E~~~~~ 462 (479) +++|++.+.+.. ......++++.|+++.|+|.++.|++++|+.|+ +|.++++.++|++++++. ++++.++|+++.. T Consensus 388 ~~rl~~~~~~~~--~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gis~et~~~~~~g~~~~~ie~~~~~~~e~~~~~ 465 (501) T protein:vir:25 388 LLRLAAEMDDDP--DTAADSGAEVLWRDTEARSFGAVVDGITKLASAGIPIEHLLSMVPGMTQQTIQAIKDSLRGGEVKS 465 (501) T ss_pred HHHHHHHHhCCC--ccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH Confidence 999998876632 234556899999999999999999999999876 899999999999986542 2444443433333 Q ss_pred hhhhccCCCC---CCCcCCC Q lcl|Aclame:pro 463 EYDDLIPNNQ---DGVIDET 479 (479) Q Consensus 463 ~~~~~~~~~~---~~~~det 479 (479) .......... ...+.++ T Consensus 466 ~~~~~~~~~~~~~~~~~~~~ 485 (501) T protein:vir:25 466 LVDKLLSNEPAPVPPPPPQA 485 (501) T ss_pred HHHHhhccCcCCCCCCCCCC Confidence 3322222111 1111111 No 50 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=100.00 E-value=7.5e-72 Score=410.51 Aligned_cols=433 Identities=15% Similarity=0.129 Sum_probs=323.8 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |.+.+..+ ...+++.+......+ ..|++++.+||+|+|++++.+.. .+....++|+++| T Consensus 1 ~~~~~~~d------------~~~~i~~L~~~~~~~-~~r~~~~~~Yy~g~~~i~~~~~~--------~~~~~~~~~~~~n 59 (488) T protein:vir:23 1 MAETESID------------PEKLRDQLLDAFENK-QNELKSSKAYYDAERRPDAIGLA--------VPLDMRKYLAHVG 59 (488) T ss_pred CCcccCCC------------HHHHHHHHHHHHHHH-HHHHHHHHHHHhcccchhhcCcc--------cchhhhhhhhhcc Confidence 44444333 223333333333332 46899999999999988765432 2333456788999 Q ss_pred hHHHHHHHHHhhhhccCeeecC---------Cc-hhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeC------- Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGNPIVFNA---------DD-DNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYIN------- 143 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~~~~~~~---------~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d------- 143 (479) |+++||++.+++|+.+|+++.. ++ +....+++.|..|+|+..+.++++++++||++|++|+.+ T Consensus 60 ~~~~ivd~~a~~l~~~Gf~~~~~~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~ 139 (488) T protein:vir:23 60 YPRTYVDAIAERQELEGFRIPSANGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPEVDFD 139 (488) T ss_pred hHHHHHHHHHHhhhccceeccCCcccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccC Confidence 9999999999999888776532 22 334455666778999999999999999999999999874 Q ss_pred -CCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccc Q lcl|Aclame:pro 144 -RKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTD 222 (479) Q Consensus 144 -~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 222 (479) +++.++|++++|++++++||+.. +++.+++++|.. .+++.+.++++|+++.+++|....+++ T Consensus 140 ~~~~~~~i~~~~p~~~~~~~d~~~-~~~~~~~~~~~~--~~~~~~~~~~~y~~~~~~~~~~~~~~~-------------- 202 (488) T protein:vir:23 140 VDPEVPLIRVEPPTALYAEVDPRT-RKVLYAIRAIYG--ADGNEIVSATLYLPDTTMTWLRAEGEW-------------- 202 (488) T ss_pred CCCCcceEEEeccceeEEEEecCC-CceEEEEEEEEe--cCCCcEEEEEEEecCcEEEEEecCCce-------------- Confidence 45678999999999999999865 467888887754 345667889999999999987765543 Q ss_pred ccccccccccccccccccceEEecCCC-----CCCchHH-HHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh Q lcl|Aclame:pro 223 IQEGHFRINNKEQGWGKVPFIPFKNNE-----KCVSDLT-FYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE 296 (479) Q Consensus 223 ~~~~~~~~~~~~~~~g~vPvv~~~n~~-----~g~s~~~-~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~ 296 (479) ...+..+|+||+||||+|.|+. +|+|+|+ .|++|+|+||+++|++++.++++++|++++.|........ T Consensus 203 -----~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~ 277 (488) T protein:vir:23 203 -----EAPTSTPHGLEMVPVIPISNRTRLSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQRLIFGAKPEELGI 277 (488) T ss_pred -----EeccccccCCCCcceEEeccccccCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCCCcccccc Confidence 2345678999999999999875 5899997 5899999999999999999999999999999875433211 Q ss_pred H------HHHhhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-----ccccHHHHHHHHH Q lcl|Aclame:pro 297 F------IDNIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-----GDKSGVALKFLYS 365 (479) Q Consensus 297 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-----g~~Sg~Ai~~~~~ 365 (479) . ......+.++.+++++++++++++. .+.+++++.++..|+.++..++++...+ +++||+||+++++ T Consensus 278 ~~~~~~~~~~~~~~~v~~~~~g~~~~~~q~~~--~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al~~~~~ 355 (488) T protein:vir:23 278 NAETGQRMFDAYMARILAFEGGEGAHAEQFSA--AELRNFVDALDALDRKAASYSGLPPQYLSSSSDNPASAEAIKAAES 355 (488) T ss_pred cccccchhhhhhhhhhccCCCCCCceeEecCC--CChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHH Confidence 1 1122334555667777888877653 3467777778888877777666654433 2369999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHh----ccCChHHHHHhC Q lcl|Aclame:pro 366 LLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKST----GIVSDETIVSNH 441 (479) Q Consensus 366 ~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~----g~is~et~~~~l 441 (479) +|.+||.++++.|+.+|++++++++.+++... ...+..+++++|+++.|+|.++.+++++|++ |++|+||+++++ T Consensus 356 ~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~-~~~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l 434 (488) T protein:vir:23 356 RLVKKVERKNKIFGGAWEQAMRLAYKMVKGGD-IPTEYYRMETVWRDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDM 434 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchhhccceEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhC Confidence 99999999999999999999999998876432 3346678999999999999999999999973 479999999999 Q ss_pred CCCCCHHHHHHHHHHHHHHHH--hhhhccCCC-CCCCcCC--C Q lcl|Aclame:pro 442 PWVEDVNDELERLKKQEDTQK--EYDDLIPNN-QDGVIDE--T 479 (479) Q Consensus 442 ~~~~d~~~El~~i~~E~~~~~--~~~~~~~~~-~~~~~de--t 479 (479) |+++++.+|+++++++++++. ......... +.+...+ + T Consensus 435 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (488) T protein:vir:23 435 GYTIVEREQMRQWLEQDQKQGLGLIGSLYGASTPEGKPGEAPV 477 (488) T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC Confidence 999999999999877665432 111111110 1111111 1 No 51 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=100.00 E-value=3.5e-71 Score=406.83 Aligned_cols=437 Identities=13% Similarity=0.079 Sum_probs=319.3 Q ss_pred HhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhc Q lcl|Aclame:pro 16 LKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVG 95 (479) Q Consensus 16 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g 95 (479) ....++.++++.+.++... +.+|++++++||+|+|++++.+..... .....++|+++||+++||++.++|++| T Consensus 1 ~~~~t~~~~~~~l~~~~~~-~~~r~~~l~~Yy~g~~~i~~~~~~~~~------~~~~~~~k~~~n~~~~ivd~~~~~l~~ 73 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDD-GMSRVRLLARYSNGDAPLPELTRNTSA------AWRSFQREARTNWGLMVRDSVADRIIP 73 (456) T ss_pred CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCchhcCcccCh------hhhhhhhhhhcchHHHHHHHHHhhhcc Confidence 4455666666555544444 457899999999999988654433211 122235789999999999999999999 Q ss_pred cCeeecCCc--hhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEE Q lcl|Aclame:pro 96 NPIVFNADD--DNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAF 173 (479) Q Consensus 96 ~~~~~~~~~--~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~ 173 (479) +|+++.+++ +....+++.|..|+++..+.++++++++||++|++||.+++|.+++++++|.+++++||+...+++.++ T Consensus 74 ~~~~~~~~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~ 153 (456) T protein:vir:10 74 NGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAA 153 (456) T ss_pred CCeecCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEEEcCCCCcceEEE Confidence 999987643 334456677788999999999999999999999999999999999999999999999999988899999 Q ss_pred EEEEeeecccCceEEEEEEEeCCcEEEEEEcC-CccccccccccccccccccccccccccccccccccceEEecCCCCCC Q lcl|Aclame:pro 174 IRFYYIEDIDGNKIKRVEYYTENDITYFIERG-NSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCV 252 (479) Q Consensus 174 i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~ 252 (479) +++|... ++.. .+..+|...++..+.... ..+.. ...........+......+|.+|+|||+++ +|+.|+ T Consensus 154 i~~~~~~--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~-~N~~g~ 224 (456) T protein:vir:10 154 MRWWRDL--DAES-DFAIVWSGDGWQKFARPCFVQSSS-----RRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGM 224 (456) T ss_pred EEEEEec--CCce-eEEEEEeccceeEEEEEEEEeecc-----cceeeeecCCceeeccccCCCCCceeEEEe-cCCCCC Confidence 9988754 3333 344455555443332211 10000 001111223344555667899999999887 567899 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccch--hhH--------HHHhhcccceecCCCCcceeeecC- Q lcl|Aclame:pro 253 SDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSL--QEF--------IDNIRYYKSIKVDGGGGVDKLEIN- 321 (479) Q Consensus 253 s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~- 321 (479) |+|+++++++|+||+++|++++.++++++|++++.|...... ++. ......+.++..+++ +++.+.+ T Consensus 225 gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~ 302 (456) T protein:vir:10 225 GEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPG--VDIWESQA 302 (456) T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhhccccccCCCC--cceEEecc Confidence 999999999999999999999999999999999998643221 111 011122333334444 4444433 Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCcccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 322 IPVEAKKELLDRLEKNIIIFGQGVNPESQN-TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKS 400 (479) Q Consensus 322 ~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~-~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~ 400 (479) .+.+.+.+.++.+...|+..+.+|+..+++ .+|+||+||++++.+|.+|+..+++.|+++|++++++++.+.+ . T Consensus 303 ~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g-----~ 377 (456) T protein:vir:10 303 NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEG-----E 377 (456) T ss_pred cChhHHHHHHHHHHHHHHhccCCChHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C Confidence 445667777777777777777888777765 4689999999999999999999999999999999999887543 2 Q ss_pred cccceeeEEeCCCCCCCHHHHHHHHHHHh--ccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCCc Q lcl|Aclame:pro 401 YDYKTVQITFNHSMIINEAEKIDMAAKST--GIVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVI 476 (479) Q Consensus 401 ~~~~~i~i~f~~~~p~d~~e~a~~~~k~~--g~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~~ 476 (479) .+...++++|+++.|+|.++.|++++|+. |++|.+++++++|+..+ .++|++|+++|+.+.+......+. +++.- T Consensus 378 ~~~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i~~~e~er~~~e~~~~~~~~~~~~~-~~~~~ 456 (456) T protein:vir:10 378 SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQ-EDGSR 456 (456) T ss_pred CcccceeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhcCC-CCCCC Confidence 34457899999999999999999999974 78999999999987654 346788888877655433233332 22222 No 52 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=100.00 E-value=3.5e-71 Score=406.83 Aligned_cols=437 Identities=13% Similarity=0.079 Sum_probs=319.3 Q ss_pred HhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhc Q lcl|Aclame:pro 16 LKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVG 95 (479) Q Consensus 16 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g 95 (479) ....++.++++.+.++... +.+|++++++||+|+|++++.+..... .....++|+++||+++||++.++|++| T Consensus 1 ~~~~t~~~~~~~l~~~~~~-~~~r~~~l~~Yy~g~~~i~~~~~~~~~------~~~~~~~k~~~n~~~~ivd~~~~~l~~ 73 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDD-GMSRVRLLARYSNGDAPLPELTRNTSA------AWRSFQREARTNWGLMVRDSVADRIIP 73 (456) T ss_pred CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCchhcCcccCh------hhhhhhhhhhcchHHHHHHHHHhhhcc Confidence 4455666666555544444 457899999999999988654433211 122235789999999999999999999 Q ss_pred cCeeecCCc--hhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEE Q lcl|Aclame:pro 96 NPIVFNADD--DNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAF 173 (479) Q Consensus 96 ~~~~~~~~~--~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~ 173 (479) +|+++.+++ +....+++.|..|+++..+.++++++++||++|++||.+++|.+++++++|.+++++||+...+++.++ T Consensus 74 ~~~~~~~~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~ 153 (456) T protein:vir:10 74 NGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAA 153 (456) T ss_pred CCeecCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEEEcCCCCcceEEE Confidence 999987643 334456677788999999999999999999999999999999999999999999999999988899999 Q ss_pred EEEEeeecccCceEEEEEEEeCCcEEEEEEcC-CccccccccccccccccccccccccccccccccccceEEecCCCCCC Q lcl|Aclame:pro 174 IRFYYIEDIDGNKIKRVEYYTENDITYFIERG-NSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCV 252 (479) Q Consensus 174 i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~ 252 (479) +++|... ++.. .+..+|...++..+.... ..+.. ...........+......+|.+|+|||+++ +|+.|+ T Consensus 154 i~~~~~~--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~-~N~~g~ 224 (456) T protein:vir:10 154 MRWWRDL--DAES-DFAIVWSGDGWQKFARPCFVQSSS-----RRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGM 224 (456) T ss_pred EEEEEec--CCce-eEEEEEeccceeEEEEEEEEeecc-----cceeeeecCCceeeccccCCCCCceeEEEe-cCCCCC Confidence 9988754 3333 344455555443332211 10000 001111223344555667899999999887 567899 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccch--hhH--------HHHhhcccceecCCCCcceeeecC- Q lcl|Aclame:pro 253 SDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSL--QEF--------IDNIRYYKSIKVDGGGGVDKLEIN- 321 (479) Q Consensus 253 s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~- 321 (479) |+|+++++++|+||+++|++++.++++++|++++.|...... ++. ......+.++..+++ +++.+.+ T Consensus 225 gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~ 302 (456) T protein:vir:10 225 GEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPG--VDIWESQA 302 (456) T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhhccccccCCCC--cceEEecc Confidence 999999999999999999999999999999999998643221 111 011122333334444 4444433 Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCcccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 322 IPVEAKKELLDRLEKNIIIFGQGVNPESQN-TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKS 400 (479) Q Consensus 322 ~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~-~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~ 400 (479) .+.+.+.+.++.+...|+..+.+|+..+++ .+|+||+||++++.+|.+|+..+++.|+++|++++++++.+.+ . T Consensus 303 ~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g-----~ 377 (456) T protein:vir:10 303 NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEG-----E 377 (456) T ss_pred cChhHHHHHHHHHHHHHHhccCCChHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C Confidence 445667777777777777777888777765 4689999999999999999999999999999999999887543 2 Q ss_pred cccceeeEEeCCCCCCCHHHHHHHHHHHh--ccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCCc Q lcl|Aclame:pro 401 YDYKTVQITFNHSMIINEAEKIDMAAKST--GIVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVI 476 (479) Q Consensus 401 ~~~~~i~i~f~~~~p~d~~e~a~~~~k~~--g~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~~ 476 (479) .+...++++|+++.|+|.++.|++++|+. |++|.+++++++|+..+ .++|++|+++|+.+.+......+. +++.- T Consensus 378 ~~~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i~~~e~er~~~e~~~~~~~~~~~~~-~~~~~ 456 (456) T protein:vir:10 378 SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQ-EDGSR 456 (456) T ss_pred CcccceeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhcCC-CCCCC Confidence 34457899999999999999999999974 78999999999987654 346788888877655433233332 22222 No 53 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=100.00 E-value=5.6e-71 Score=405.72 Aligned_cols=432 Identities=13% Similarity=0.071 Sum_probs=308.4 Q ss_pred HHHHHHhccChHHHHHHHH-HHHHHh--hHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHH Q lcl|Aclame:pro 11 LIKVQLKKESTINLVKVIE-HYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVD 87 (479) Q Consensus 11 ~~~~~~~~~~~~~~~~~i~-~~~~~~--~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~ 87 (479) -|+++-...+...+.+.|. .++.++ +.+|++++.+||+|+|++++.+.... ..+..+..+++++||+++||+ T Consensus 1 ~~~~p~~~l~~~~~~~~~~~~l~~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~-----~~~~~~~~~~~~~n~~~~iVd 75 (479) T protein:vir:99 1 MIDLPDEDLSSEGLAKYLETKVFPKMNTECERLDDFEAWTKNGQEVPDLATRHK-----NKEREVLQQLSRKPWMGLMVN 75 (479) T ss_pred CccCCcccCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcccccccccC-----ChhHHHHHHHhhcCcHHHHHH Confidence 2333444555666666654 334443 56789999999999999876543221 122223344567899999999 Q ss_pred HHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEe-----CCCCceEEEEEccceeEEEE Q lcl|Aclame:pro 88 QKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYI-----NRKGEFKYVIIPAEEAIPIW 162 (479) Q Consensus 88 ~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~-----d~~~~~~i~~~~p~~~~~~~ 162 (479) +.+++++.++++.. +++....+++.|..|+|+..+.++++++++||++|++||. |++|.+++++++|++++++| T Consensus 76 ~~~~~l~~~gf~~~-d~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~~i~~~~p~~~~~iy 154 (479) T protein:vir:99 76 SFAQQLIVDGYRKT-GTNENAKGWDTWRLNQMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVARIKCIDPRDAFAIW 154 (479) T ss_pred HHHhhcccccccCC-CchhhHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCCceEEEEechhheEEEe Confidence 99999999997753 3344445667777899999999999999999999999996 56788999999999999999 Q ss_pred cCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccce Q lcl|Aclame:pro 163 DSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF 242 (479) Q Consensus 163 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 242 (479) ++....... +..++. . ....+.+|+...++.|....+. +...+..+|+||+||| T Consensus 155 dd~~~~~~~--~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~h~~g~vPv 208 (479) T protein:vir:99 155 EDPYWDEWP--KYLLER--Q---PNGQYWWWTEEDYSIFEFKQGK-------------------FIYRETVSHDYGHIPF 208 (479) T ss_pred cCCccccee--eEEEee--c---CceeEEEEecceEEEEEecCCc-------------------eeeccccccCCCCcce Confidence 877544322 222221 1 1224567888877777665443 2334678999999999 Q ss_pred EEecCC----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH---HHHhhcccceecCCCCcc Q lcl|Aclame:pro 243 IPFKNN----EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF---IDNIRYYKSIKVDGGGGV 315 (479) Q Consensus 243 v~~~n~----~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 315 (479) |+|.|+ ++|+|+|+++++|+|+||+++|++++.++++++|++++.|......... .......+++ ...++++ T Consensus 209 v~f~n~~~~~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~ 287 (479) T protein:vir:99 209 VRYVNVMDLRGVCYGDVEPLVTVAKAIDKTGLDILLVQHHQSFQIRWATGLMLPEGANADQEKMRFAQESML-ISQNEKA 287 (479) T ss_pred EEeecCCCcCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCCCcccccccchhccccccccce-eecCCCc Confidence 999998 5799999999999999999999999999999999999999754332221 1222333344 3456678 Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHHH---hCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 316 DKLEINIPVEAKKELLDRLEKNIIIF---GQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEY 392 (479) Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~i~~~---s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~ 392 (479) ++++.+ ..+.+++++.++..++.+ +.+|+..++..+|+||+||++++.+|..++.++++.|+.+|++++++++.+ T Consensus 288 ~~~q~~--~~~~~~~~~~l~~~i~~i~~~t~~p~~~~g~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~ 365 (479) T protein:vir:99 288 SFGAIP--AAPLDGLLNAYKESLLEFLALAQLPPHIAGQIVNVAADALAAGTRQTMQKLFEKQATWKASHNQTMRLVNKI 365 (479) T ss_pred eEEEec--ccchHHHHHHHHHHHHHHhccCCCCHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 887665 333455555555555555 455655666668899999999999999999999999999999999999887 Q ss_pred HHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHH-HHHHHHHHHHHHHhh-hhcc Q lcl|Aclame:pro 393 LKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVND-ELERLKKQEDTQKEY-DDLI 468 (479) Q Consensus 393 ~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~~-El~~i~~E~~~~~~~-~~~~ 468 (479) .+.. .+....+++++|.++.++|..+.+++++|+ +|++|+||+++++|++++++. ++++.++++.+.... .+.. T Consensus 366 ~~~~--~~~~~~~i~~~w~~~~~~s~~~~ad~~~kl~~ag~is~et~l~~l~gv~~~~~e~~~~~~~~~~~~~~~~~~~~ 443 (479) T protein:vir:99 366 EGRT--EEATDLDFTITWQDVTIQSLAQFADAWAKMVESLKIPAEGVWDMIPNLDQSTVNGWKEIYDREGDFGKYMRKLQ 443 (479) T ss_pred cCCC--ccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 6532 234456799999999999999999999997 579999999999999986542 233333333322222 2211 Q ss_pred CC-----CCCCCcCCC Q lcl|Aclame:pro 469 PN-----NQDGVIDET 479 (479) Q Consensus 469 ~~-----~~~~~~det 479 (479) .. ..++.+++| T Consensus 444 ~~~~~~~~~~~~~~~~ 459 (479) T protein:vir:99 444 NGPDPAEQRGGPNGAT 459 (479) T ss_pred cccCcccccCCCCCCC Confidence 11 111111111 No 54 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=100.00 E-value=8.7e-70 Score=399.20 Aligned_cols=438 Identities=12% Similarity=0.067 Sum_probs=318.5 Q ss_pred HhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhc Q lcl|Aclame:pro 16 LKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVG 95 (479) Q Consensus 16 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g 95 (479) ....++.++++.+.+++.. +.+|++++.+||+|+|++++.+..... .....++++++||+++||++.++|++| T Consensus 1 ~~~~t~~~~~~~l~~~~~~-~~~r~~~l~~Yy~g~~~i~~~~~~~~~------~~~~~~~~~~~n~~~~ivd~~~~~l~~ 73 (456) T protein:vir:79 1 MTASTPAEWLPVLTKRIDD-GMSRVRLLARYSNGDAPLPELTRNTSA------AWRSFQREARTNWGLMVRDSVADRIIP 73 (456) T ss_pred CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCChhhcCcccCh------hhchhhhhhhcchHHHHHHHHHhhhcc Confidence 4445555565555555554 566899999999999998764432211 111234567899999999999999999 Q ss_pred cCeeecCCch-h-HHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEE Q lcl|Aclame:pro 96 NPIVFNADDD-N-LTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAF 173 (479) Q Consensus 96 ~~~~~~~~~~-~-~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~ 173 (479) +|+++.++++ + ...+++.|..|+|+..+.++++++++||++|+++|.+++|.+++++++|.+++++||+....++.++ T Consensus 74 ~g~~~~~~~d~~~~~~~~~~~~~n~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~~i~~~~p~~~~~i~d~~~~~~~~~~ 153 (456) T protein:vir:79 74 NGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRSA 153 (456) T ss_pred CCeecCCCCCccHHHHHHHHHHhcChhHHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEeccceeEEEEcCCCCCceEEE Confidence 9999876443 3 3445666778999999999999999999999999999999999999999999999999988889999 Q ss_pred EEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCc Q lcl|Aclame:pro 174 IRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVS 253 (479) Q Consensus 174 i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s 253 (479) +++|...+ ....+..+|+.+.++++.......... ...........+..+...+|++|+|||++| +|+.|+| T Consensus 154 ~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~-~N~~~~g 225 (456) T protein:vir:79 154 MRWWRDLD---AESDFAIVWSGDGWQKFARPCFVQSSS----RRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMG 225 (456) T ss_pred EEEEEecC---CceeEEEEEcCCceEEEEEEEEeeccc----cceeeeccCCceeecccccCCCCceeEEEe-cCCCCCc Confidence 99886432 234466778887776654432111100 011112223344555677999999999998 4578999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccch--hhH------HHH--hhcccceecCCCCcceeeec-CC Q lcl|Aclame:pro 254 DLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSL--QEF------IDN--IRYYKSIKVDGGGGVDKLEI-NI 322 (479) Q Consensus 254 ~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~--~~~------~~~--~~~~~~~~~~~~~~~~~~~~-~~ 322 (479) +|+++++++|+||+++|++++.++++++|++++.|...... ++. ... ...+.++.++++ +++.+. +. T Consensus 226 d~e~v~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g~~i~~~~~~~~~~~~~~~~~~~--~~~~q~~~~ 303 (456) T protein:vir:79 226 EVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENGNAIDYASIFEAAPGALWELPPG--VDIWESQTN 303 (456) T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccccccchhhhhhhhccccccCCCC--cceeeeccc Confidence 99999999999999999999999999999999998643211 100 011 122233344444 444333 34 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCcccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc Q lcl|Aclame:pro 323 PVEAKKELLDRLEKNIIIFGQGVNPESQN-TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSY 401 (479) Q Consensus 323 ~~~~~~~~~~~l~~~i~~~s~~~~~~~~~-~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~ 401 (479) +.+.+.+.++.+..+|+..+.+|+..+++ ++|+||+||++++.+|.+|++.+++.|+++|++++++++.+.+. . T Consensus 304 ~~~~~~~~l~~~i~~i~~~t~~p~~~~~~~~~N~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-----~ 378 (456) T protein:vir:79 304 DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-----S 378 (456) T ss_pred ChHHHHHHHHHHHHHHHhhcCCChhHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----C Confidence 45566666666666666666777666664 46899999999999999999999999999999999998876442 3 Q ss_pred ccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCC Q lcl|Aclame:pro 402 DYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGV 475 (479) Q Consensus 402 ~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~ 475 (479) +...++++|+++.|+|.++.|++++|+ +|++|.+++++.+|+..+ .++|++|+++|..+........++.+..- T Consensus 379 ~~~~i~v~w~~~~~~s~~~~ada~~kl~~~G~~~~~~~~~~lg~~~~~i~~~e~~r~~~e~~~~~~~~~~~~~~~~~~ 456 (456) T protein:vir:79 379 VEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) T ss_pred ccccceEEeCCCCCcCHHHHHHHHHHHHhcCCChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhhHhhcCCCCCCC Confidence 446789999999999999999999997 478999999998887543 34677787777665432222211111111 No 55 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=100.00 E-value=1.4e-66 Score=381.65 Aligned_cols=443 Identities=11% Similarity=0.052 Sum_probs=312.3 Q ss_pred CCcccCcHHHHHHHHhccChHHHHHHHHHHHHHh--hHHHHHHHHHHhccCCcccccccccccccccccccccCcceeec Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKESTINLVKVIEHYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAIN 79 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~ 79 (479) |+--.+....+.....+.+..+ ...|+.++.++ +..|++++.+||+|+|.+.+.+... +....++++++ T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~e-~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~--------p~~~~~~~~v~ 71 (504) T protein:vir:99 1 MTEETTSASKFTFRIPELNDDV-VDKVNGLYQQLVDRTPRNLLRASFYDGKYAIRQIGNLI--------PPEYLRTATVL 71 (504) T ss_pred CCccCCcccccccccCCCCHHH-HHHHHHHHHHHHHHhHHHHHHHHHHhccccchhccccc--------cHHHHHHhhcc Confidence 2222222222333333333322 23333333332 3468999999999999886544322 22233456789 Q ss_pred chHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCc--eEEEEEccce Q lcl|Aclame:pro 80 NYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGE--FKYVIIPAEE 157 (479) Q Consensus 80 n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~--~~i~~~~p~~ 157 (479) ||+++||+++++++..++++...+++....+++.|..|+|+....++++++++|||+|++||.+++|+ +.|++++|++ T Consensus 72 n~~~~iVd~~a~rl~~~Gf~~~d~~~~~~~l~~i~~~N~ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP~~ 151 (504) T protein:vir:99 72 GWSAKAVDTLARRCNLESFVWPDGDYGSIGGPDVWDENFFATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSAMQ 151 (504) T ss_pred CcHHHHHHHHHhhhccceeeCCCCChhhHHHHHHHHhcChhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccce Confidence 99999999999999999998765555555677778889999999999999999999999999998875 5789999999 Q ss_pred eEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 158 AIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGW 237 (479) Q Consensus 158 ~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (479) ++++||+.. +++.+++++|.. +. +.....+++|+++.+++|...+++. ...+..+|++ T Consensus 152 ~~~iyD~~~-~~~~~a~~~~~~-d~-~g~~~~~~~y~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 209 (504) T protein:vir:99 152 ATGEWNSRR-NAMDSLLSITSR-DA-EGHPTGIALYEDGVTVTADMDDDGD-------------------WHADVRTHKL 209 (504) T ss_pred eEEEEeCCC-CceeEEEEEEEe-cC-CCeEEEEEEEcCCcEEEEEEcCCce-------------------eeeccccCCC Confidence 999999865 567777776654 23 3456678999999999987654321 1235668999 Q ss_pred cccceEEecCC-----CCCCchHH-HHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh------HHHHhhccc Q lcl|Aclame:pro 238 GKVPFIPFKNN-----EKCVSDLT-FYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE------FIDNIRYYK 305 (479) Q Consensus 238 g~vPvv~~~n~-----~~g~s~~~-~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~------~~~~~~~~~ 305 (479) | ||||+|.|+ ..|+|++. ++++|+|++|++++++.+..+++++|++++.|....+... .......++ T Consensus 210 g-vPvV~~~n~~~~~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~~~~~~~d~~~~~~~~~~~~~ 288 (504) T protein:vir:99 210 G-VPVEVLPYKPREDRPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSFPQLILLGADAKNFRNKDGSMKPAWQIALAR 288 (504) T ss_pred C-cceEEecccccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCccccccccccccchhhhhhhh Confidence 8 899999986 36899885 8999999999999999999999999999999976433211 111222344 Q ss_pred ceecCCC--------CcceeeecC-CCHHHHHHHHHHHHHHHHHHhCCCCCcccc---cccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 306 SIKVDGG--------GGVDKLEIN-IPVEAKKELLDRLEKNIIIFGQGVNPESQN---TGDKSGVALKFLYSLLDLKCSK 373 (479) Q Consensus 306 ~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~---~g~~Sg~Ai~~~~~~l~~k~~~ 373 (479) ++.++.+ .++++.+.+ .+.+.+.+.++.+..+|...+++|...++. .+|+||+||++++.+|..|+.+ T Consensus 289 i~~~~~~~~~~~~~~~~~~~~q~~~~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n~sSa~Ai~~~~~~L~~ka~~ 368 (504) T protein:vir:99 289 VFALPDDEDEPDAARARADVKQFPASSPQPHIEMLEQIAMMFSGETSIPVESLGFSNRANPTSADAYIASREDLIAEAEG 368 (504) T ss_pred hhcCCCccccccccCccceeeecCCCChHHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHHHHH Confidence 5555543 346665544 233444444444444444556677655543 2568999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhcc-----CChHHHHHhCCCCCCHH Q lcl|Aclame:pro 374 TEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGI-----VSDETIVSNHPWVEDVN 448 (479) Q Consensus 374 ~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~-----is~et~~~~l~~~~d~~ 448 (479) +++.|+.+|++++++++.+.+.......+..++++.|.++.++|.++.|++++|+++. .+.+++++++|+. + T Consensus 369 k~~~f~~~l~~~~rla~~~~~~~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ag~~l~~~~~~l~~~lg~~---~ 445 (504) T protein:vir:99 369 ATDDWSPAFRRSMIRALAIKNGLDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLGAGPEWLKETEVGLELLGLT---P 445 (504) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccccceeEecCCCccCHHHHHHHHHHHHhhccccccchHHHHhhcCCC---H Confidence 9999999999999999988876655666778899999999999999999999998652 3468899999874 3 Q ss_pred HHHHHHHHHHHHHH--hh-hhcc-----CCCCCCCcCCC Q lcl|Aclame:pro 449 DELERLKKQEDTQK--EY-DDLI-----PNNQDGVIDET 479 (479) Q Consensus 449 ~El~~i~~E~~~~~--~~-~~~~-----~~~~~~~~det 479 (479) +|++|+++|++++. .. +... ....++.++++ T Consensus 446 ~ei~r~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 484 (504) T protein:vir:99 446 QQAKRALAERRRASSVSIIEALNRRQQEAATAGEDQDQG 484 (504) T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcccCCCCCCCCCCCcC Confidence 56667766554321 11 1111 11122222222 No 56 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=100.00 E-value=2.7e-64 Score=369.08 Aligned_cols=391 Identities=10% Similarity=-0.018 Sum_probs=300.6 Q ss_pred HHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHH Q lcl|Aclame:pro 32 ILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLL 111 (479) Q Consensus 32 ~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~ 111 (479) +.-| ..|++++.+||+|+|++++...... +..+.++|+++||++++|+++++++..++++ .++. .++ T Consensus 1 l~~~-~~r~~~~~~yY~g~~~~~~~~~~~p-------~~~~~~~~~v~nw~~~~Vds~a~rl~~~Gf~--~~d~---~l~ 67 (410) T protein:vir:95 1 MNLY-QSRVNLRYKHYAMQHYEAPTGITIP-------AHIRAKYQAVLGWAAKGVDSLADRLIFRAFA--NDDF---NVT 67 (410) T ss_pred CCcc-hhhHHHHHHHhcCCCCccccchhcc-------HHHHhHHHhhcchhHHHHHHhHhhhcccccc--CCCc---hHH Confidence 3333 3578999999999998865443221 1233456778999999999999999999986 3433 367 Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEE Q lcl|Aclame:pro 112 NDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVE 191 (479) Q Consensus 112 ~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 191 (479) +.|..|+|+....++++.+++|||+|+.|+.+++|.++|+++||.+++++||+. .+++.++++.+.. .++.....+. T Consensus 68 ~i~~~N~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~~i~~~sP~~~~~i~Dp~-~~~~~~al~~~~~--~~~~~~~~~~ 144 (410) T protein:vir:95 68 EIFDRNNPDIFFDSAILSALIGSCSFVYISKGEDDEVRLQVIESSNATGVIDPI-TGLLVEGYAVLAR--DDYNRPTLEA 144 (410) T ss_pred HHHhhcChHHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEEeCC-CCceEEEEEEEEe--cCCCeEEEEE Confidence 778889999999999999999999999999999999999999999999999985 4678888887654 3344567889 Q ss_pred EEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCC-----CCCchH-HHHHHHHHHH Q lcl|Aclame:pro 192 YYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE-----KCVSDL-TFYKSLIDIY 265 (479) Q Consensus 192 ~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~-----~g~s~~-~~v~~lid~~ 265 (479) +|+++.++++...+..+ ..+|++|+||+|+|.|+. +|+|++ +++++++|++ T Consensus 145 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~ 201 (410) T protein:vir:95 145 YFEPNATHFIPKDGEPY-----------------------SVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYA 201 (410) T ss_pred EEeCCcEEEEeeCCccc-----------------------cccCCCCCcceEEecccccCCccCCccccchhHHHHHHHH Confidence 99999999887654321 247999999999999853 589988 6899999999 Q ss_pred HHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCC---cceeeecC-CCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 266 DNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGG---GVDKLEIN-IPVEAKKELLDRLEKNIIIF 341 (479) Q Consensus 266 ~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~l~~~i~~~ 341 (479) |++++++....+++++|++++.|.+.........+...++++.++++. .+++.+.+ .+.+.+.+.++.+..++... T Consensus 202 ~r~~~~~~~~~e~~a~pqr~i~G~d~d~~~~~~~~~~~~~i~~~~~~~~~~~~~v~q~~~~~l~~~~~~l~~l~~~~a~~ 281 (410) T protein:vir:95 202 KRTLERADITAEFYSWPQKYILGLDPDAEPMEKWKATVSSLLTISSSDKGVKPSVGQFTTASMSPFTEQLRTAAAGFAGE 281 (410) T ss_pred HHHHHHHHHHHHHhcchhheeeccCCCCCcCchhhhhhhhheeccCCCCCCcceEEecCCCChHHHHHHHHHHHHHHhhh Confidence 999999999999999999999998643222222233345667766543 36666554 33444444444555555555 Q ss_pred hCCCCCccccc-cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeC---CCCCC Q lcl|Aclame:pro 342 GQGVNPESQNT-GD-KSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFN---HSMII 416 (479) Q Consensus 342 s~~~~~~~~~~-g~-~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~---~~~p~ 416 (479) |++|...++.. .| +||+||++++.+|..|++++++.|+.+|++++++++.+.+..........++++.|. ++..+ T Consensus 282 s~lP~~~lg~~~~NpsSa~Al~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~d~~~~ 361 (410) T protein:vir:95 282 MGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYTRSQFVRTAVKWEPLFEADAN 361 (410) T ss_pred cCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccceeeEEeeecCCcchh Confidence 56665555543 23 799999999999999999999999999999999999887766555667778999998 55666 Q ss_pred CHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 417 NEAEKIDMAAKST----GIVSDETIVSNHPWVEDVNDELERLKKQEDTQKE 463 (479) Q Consensus 417 d~~e~a~~~~k~~----g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~ 463 (479) +.++.+|+++|+. |+++.+++++++|+.++ ++..++.+|+++..+ T Consensus 362 s~a~~aDa~~Kl~~a~~g~~~~~~~~~~lg~~~~--~~~~~~~~e~~~~g~ 410 (410) T protein:vir:95 362 TMTMIGDGVVKLNQALPGYINAETIRDLTGIAGD--MSAKPVVSEGGSNGE 410 (410) T ss_pred hHHHHHHHHHHHHHhccCCccHHHHHHhcCCChH--HHHHHHHHHHHhCCC Confidence 8999999999973 68899999999998642 344455555555554 No 57 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=100.00 E-value=7.7e-63 Score=361.12 Aligned_cols=454 Identities=12% Similarity=0.082 Sum_probs=319.0 Q ss_pred CcHHHHH---HHHhcc-ChHHHHHHHHH---HHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeec Q lcl|Aclame:pro 7 SETDLIK---VQLKKE-STINLVKVIEH---YILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAIN 79 (479) Q Consensus 7 ~~~~~~~---~~~~~~-~~~~~~~~i~~---~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~ 79 (479) |-...+. .-+.+. ....+.+.+.+ .+...+..++.++++||+|+|++..++.... ....+..+++++ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~------~~~~~~~~~~~~ 74 (496) T protein:vir:38 1 MINQIIAGVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEH------NGNPVNRRQLSM 74 (496) T ss_pred ChhHHHHHHHHHHHHhccchhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhcc------CCCccccceeec Confidence 3322222 222222 11222222221 2344566889999999999998876544322 222334567899 Q ss_pred chHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEcccee Q lcl|Aclame:pro 80 NYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEA 158 (479) Q Consensus 80 n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~ 158 (479) ||++.||++.|+||+|+|++++++++..++.++.+. .|+|...+.++++.++++|.+|+++|+|++|++++.+++|+++ T Consensus 75 n~~k~i~~~~a~~l~~~p~~i~~~d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v~~~~~ 154 (496) T protein:vir:38 75 NLPKVTAKYMSKLLFNEKVKINIDDKAAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFATADCM 154 (496) T ss_pred chHHHHHHHHhhhhhCCcceEeeCChHHHHHHHHHHhccCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcEEEEEEcccce Confidence 999999999999999999999999999999998776 4789999999999999999999999999999999999999999 Q ss_pred EEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEE------EcCCcccccccccccccccccccccccccc Q lcl|Aclame:pro 159 IPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFI------ERGNSFIQEFLYDEYGKMTDIQEGHFRINN 232 (479) Q Consensus 159 ~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479) +|+|++...-..+++++. ...+++.+++++.|+.....+++ ......... ........+.. .... T Consensus 155 ~P~~~~~~~~~~~~f~~~---~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~-----~v~~~~~~~~~-~~~~ 225 (496) T protein:vir:38 155 YPLSNDSENVDECVIANS---FHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGT-----KVSLTLLFDDI-EPVV 225 (496) T ss_pred EEEEecCCcEEEEEEEEE---EEeCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCc-----ccccccccccc-ccce Confidence 999887643233444433 34567788888888754433222 111111100 00000111111 1123 Q ss_pred ccccccccceEEecCC---------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeee-------ecCCccchhh Q lcl|Aclame:pro 233 KEQGWGKVPFIPFKNN---------EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL-------KEYPGTSLQE 296 (479) Q Consensus 233 ~~~~~g~vPvv~~~n~---------~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~-------~g~~~~~~~~ 296 (479) ..+++.++||++|+++ ..|+|+|+++++++|+||.++|++++.++....++++- .+..+..... T Consensus 226 ~~~~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~~~~~i~v~~~~l~~~~~~~g~~~~~ 305 (496) T protein:vir:38 226 PLPDFTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDGSTTQY 305 (496) T ss_pred eecCCCcceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhhcccceecchHHhhccCCCCCccccC Confidence 3467888999998763 35999999999999999999999999999877777662 1222222222 Q ss_pred HHHHhhcccceecCCC---CcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccc--ccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 297 FIDNIRYYKSIKVDGG---GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQ--NTGDKSGVALKFLYSLLDLKC 371 (479) Q Consensus 297 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~--~~g~~Sg~Ai~~~~~~l~~k~ 371 (479) +........+.....+ ..++..+.++..+++...++.+.+.+...++.++..++ ..|..||+|++++++.+.+++ T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~~ 385 (496) T protein:vir:38 306 FDSTDEAFFLYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTK 385 (496) T ss_pred CCCccceEEEeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHHH Confidence 3223333333333222 24566677888899999999888888877776654443 457789999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCC Q lcl|Aclame:pro 372 SKTEKKFKKAIRELLWFVCEYLKI---SGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVED 446 (479) Q Consensus 372 ~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d 446 (479) ..+++.|+.+|++++++++.+... ..+...+..+++++|++++|.|..+.+++++++ +|++|++|++.++|+++| T Consensus 386 ~~~~~~~~~~l~~l~~~il~~~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~~~~~~d 465 (496) T protein:vir:38 386 NSHSQLIEQGIKEMIVSILEVGKFIEAYSGEVVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIALQRAWNITE 465 (496) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCh Confidence 999999999999999999877553 344455667899999999999999999999886 699999999999999987 Q ss_pred HH--HHHHHHHHHHHHHHhhhhccCCCCCCCcCC Q lcl|Aclame:pro 447 VN--DELERLKKQEDTQKEYDDLIPNNQDGVIDE 478 (479) Q Consensus 447 ~~--~El~~i~~E~~~~~~~~~~~~~~~~~~~de 478 (479) ++ +|++||++|++++.+..+.. .. ++.+| T Consensus 466 ~ea~~el~ri~~E~~~~~~~~d~~--~~-~~~~e 496 (496) T protein:vir:38 466 AEADEWAEMLAKEKQAEMPNNDMN--GI-FGEEE 496 (496) T ss_pred HHHHHHHHHHHHhhhccCcccccc--CC-CCCCC Confidence 44 58999998887554322111 11 11222 No 58 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=100.00 E-value=2.8e-63 Score=363.50 Aligned_cols=400 Identities=10% Similarity=0.006 Sum_probs=294.2 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHH Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLV 86 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 86 (479) |+ ...++.+...+.. +..|++++.+||+|+|++++.+.... +..+..+|+++||++++| T Consensus 1 m~-------------~~~i~~L~~~~~~-~~~r~~~~~~yy~g~~~~~~~~~~~p-------~~~~~~~~~v~nw~~~~V 59 (422) T protein:vir:97 1 MN-------------YMGMGYLRRKLAL-FKTGVDKRYRYYAMDDRDDTRSIVMP-------NNVREMYRSVLEWTAKGV 59 (422) T ss_pred CC-------------hHHHHHHHHHHHH-HHHHHHHHHHHHhcCCChhhcCcccc-------HHHHHHHHhhcchhHHHH Confidence 22 2222333333333 34579999999999998876443321 122334567789999999 Q ss_pred HHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCC-CCceEEEEEccceeEEEEcCC Q lcl|Aclame:pro 87 DQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINR-KGEFKYVIIPAEEAIPIWDSK 165 (479) Q Consensus 87 ~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~~~~~i~~~~p~~~~~~~d~~ 165 (479) +++++++..++++. ++. .+++.|..|+|+..+.++++.+++|||+|++|+.++ +|.|+|++++|++++++||+. T Consensus 60 d~~a~rl~~~Gf~~--~d~---~l~~~w~~N~ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p~i~~~sp~~~~~i~D~~ 134 (422) T protein:vir:97 60 DSLADRIIFREFTN--DDF---NAWEIFKANNPDIFFDTAIQSALIASCCFVYIMPGAEDGLPKMQVIEASKATGILDPT 134 (422) T ss_pred HHHHhccccceeeC--Cch---hHHHHHHhcChHHHHHHHHHHHHHhcceeEEEeeCCCCCeeEEEEechhhEEEEEeCC Confidence 99999999999763 333 467788889999999999999999999999999986 688999999999999999987 Q ss_pred CCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEe Q lcl|Aclame:pro 166 RQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPF 245 (479) Q Consensus 166 ~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~ 245 (479) .. ++.++++.|... .++ ....+.+|++..++++... +.+ ...+|++|+||+|+| T Consensus 135 ~~-~~~~a~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~----------------------~~~~~~~g~vPvv~~ 188 (422) T protein:vir:97 135 TF-LLTEGYAILESD-SNG-NPTLEAYFTDKDIWYYPKK-GKP----------------------YNIKNPTGHPLLVPI 188 (422) T ss_pred CC-cceeeEEEEEec-CCC-cEEEEEEEcCceEEEEcCC-Ccc----------------------ccccCCCCCcceEEe Confidence 54 566666666432 222 3334455555555554332 211 235899999999999 Q ss_pred cCCC-----CCCchH-HHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCC---cce Q lcl|Aclame:pro 246 KNNE-----KCVSDL-TFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGG---GVD 316 (479) Q Consensus 246 ~n~~-----~g~s~~-~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 316 (479) .|+. +|+|++ +.+++++|++|++++++....+++++|++++.|.+.........+...++++.++.+. +++ T Consensus 189 ~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~~~~~~~~~~~~~i~~~~~de~~~~~~ 268 (422) T protein:vir:97 189 IHRPDAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAEFYSFPQKYVLGMDPDAKPMEKWRATVSTLLEISKDEDGDKPT 268 (422) T ss_pred cccCCCccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccCcccccCchhhhhhhhhhccCCCCCCCcce Confidence 9853 589998 7899999999999999999999999999999998533222222233344666665443 356 Q ss_pred eeecCCCHHHHHHHHHHHHHHHHHH---hCCCCCcccccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 317 KLEINIPVEAKKELLDRLEKNIIIF---GQGVNPESQNTG--DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCE 391 (479) Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~i~~~---s~~~~~~~~~~g--~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 391 (479) +.+.+ ..+..++++.++..++.+ +++|...++..+ ++||+||++++.+|..|++++++.|+.+|++++++++. T Consensus 269 v~q~~--~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~ 346 (422) T protein:vir:97 269 VGQFT--TASMAPFMEHLKMYASLFAGGSGLTLDDLGFPSDNPSSVESIKAAHENLRAAGRKAQRSFSSGFLNVAYIAVC 346 (422) T ss_pred eeecC--CCChhHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 65443 333445555555555555 555655555433 37999999999999999999999999999999999998 Q ss_pred HHHhcCCCccccceeeEEeCCCCCCC---HHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 392 YLKISGNKSYDYKTVQITFNHSMIIN---EAEKIDMAAKST----GIVSDETIVSNHPWVEDVNDELERLKKQEDTQ 461 (479) Q Consensus 392 ~~~~~~~~~~~~~~i~i~f~~~~p~d---~~e~a~~~~k~~----g~is~et~~~~l~~~~d~~~El~~i~~E~~~~ 461 (479) +.+..........++++.|.+..|.+ .++.|+++.|++ |+++.+++++++|+ ++++.|+.+++++++.- T Consensus 347 ~~~~~~~~~~~~~~~~~~w~p~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~-~~~~~~~~~~~~~~~d~ 422 (422) T protein:vir:97 347 LRDEFPYLRNQFMDTVIKWEPLFEADANMLTLVGDGAIKLNQAIPGFMDADVIRDLTGV-KGADKPIPAITEVTTDG 422 (422) T ss_pred HhcCCcccchhhccceEEEccCCCCChHHHHHHHHHHHHHHhhccccccHHHHHHHcCC-CchhHHHHHHHhhhccC Confidence 87765555556778999999888877 777888899874 57899999999997 77888988987764322 No 59 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=100.00 E-value=1e-62 Score=360.47 Aligned_cols=397 Identities=11% Similarity=0.014 Sum_probs=277.1 Q ss_pred ccccccccccccccccccCcc-eeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhC Q lcl|Aclame:pro 55 NKRRYYLLDGAKVDDFTKVNN-KAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNK 133 (479) Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~-ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 133 (479) +.+... .+..+..+ ++++||+++||+++++++.+++++. .+.+....+++.|..|+|+....++++++++| T Consensus 1 ~l~~~~-------~~~~~~~~~~~v~n~~~~ivd~~~~~l~~~gf~~-~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~ 72 (434) T protein:vir:98 1 MLPKNA-------EQAFLDFQRKARTNFCGLIANASVHRLLALGVTG-PDGEPDTRASRWWQANRLDSRQKLVWRMAMAQ 72 (434) T ss_pred CCCCCc-------cHHHHHhhhhhhccchHHHHHHHHhhhccCceec-CCCchHHHHHHHHHhcChhHHHHHHHHHHhhc Confidence 111111 11112222 3578999999999999999999874 23333444556667899999999999999999 Q ss_pred CeEEEEEEeCCCC-------ceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEc-- Q lcl|Aclame:pro 134 GVEWLHPYINRKG-------EFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIER-- 204 (479) Q Consensus 134 G~~~~~v~~d~~~-------~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~-- 204 (479) |++|++||.++++ .+.|++++|++++++||+... ++.+++++|... .++... ..+|+.+..+.|... T Consensus 73 G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~-~~~~ai~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~ 148 (434) T protein:vir:98 73 SAGYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETG-EPLVGLKVWHND-IDGFGY--ARVFFDDTSFPYRTRER 148 (434) T ss_pred CceEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCC-ceEEEEEEEEec-cCCceE--EEEEEeCcEEEEEEeec Confidence 9999999987654 467999999999999998755 688889887643 334333 344444444433322 Q ss_pred CCccccccccccccccccccccccccccccccccccceEEecCC----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 205 GNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNN----EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQ 280 (479) Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~----~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~ 280 (479) ....... ... ............+|+||+||||+|.|+ ++|+|+|+++++++|+||+++|++++.+++++ T Consensus 149 ~~~~~~~---~~~----~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a 221 (434) T protein:vir:98 149 TGARLPW---GPD----SWVYTGTADSGDVHDLGGMQLVEFARMPDLGEDPEPEFAGVLDIQDRVNLGILNRMAASRFSG 221 (434) T ss_pred ccccccc---ccc----cceecccccccccCCCCccceEEeccCCCcCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHhc Confidence 2111100 000 000111234567899999999999998 67999999999999999999999999999999 Q ss_pred cceeeeecCCccchhhHHHH--------hhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCc---c Q lcl|Aclame:pro 281 EVIYVLKEYPGTSLQEFIDN--------IRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPE---S 349 (479) Q Consensus 281 ~p~l~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~---~ 349 (479) +|+++++|.......+...+ ......+.+.+++++++.+.+. ...+++++.++..|+.++..++++ + T Consensus 222 ~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~q~~~--~~~~~~~~~l~~~i~~~~~~~~~p~~~~ 299 (434) T protein:vir:98 222 FRQKWIKGHKFAKRTDPATGMTVVDQPFVPSPSAVWASEGENTQFGQLDA--TDLSGFLKEHASDVRDMLTISQTPTYLY 299 (434) T ss_pred chhhhhcCCCcccccccccccchhhhhhhccccccccCCCCCceEEEecC--cchHHHHHHHHHHHHHHhcccCCCHHHh Confidence 99999998764432221111 1112233444567788877553 344556666666666666555544 3 Q ss_pred cc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 350 QN-TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS 428 (479) Q Consensus 350 ~~-~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~ 428 (479) ++ .+|+||+|+++++.+|.+|+.++++.|+++|++++++++.+.+ .+.+..+++++|+++.|+|.++.+++++|+ T Consensus 300 ~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g----~~~~~~~~~v~w~~~~~~s~~~~ada~~kl 375 (434) T protein:vir:98 300 ATDLVNISADTIGALDILHVAKVREHIASFSEGLESVLALAAAQAG----VPEDYTEAEVRWANPAHVTMAVKADAATKL 375 (434) T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChhheeeeEEecCCCCCCHHHHHHHHHHH Confidence 32 3579999999999999999999999999999999999887643 244667899999999999999999999999 Q ss_pred hcc-CChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhh---hhcc-CC----CCCCCcCCC Q lcl|Aclame:pro 429 TGI-VSDETIVSNHPWVEDVNDELERLKKQEDTQKEY---DDLI-PN----NQDGVIDET 479 (479) Q Consensus 429 ~g~-is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~---~~~~-~~----~~~~~~det 479 (479) .|+ +|.+++++++|+. ++|++|+++|+++++.. .... +. .+...++.| T Consensus 376 ~~~g~~~e~~~~~lg~~---~~e~~r~~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 432 (434) T protein:vir:98 376 KSIGYPLDVIAEELDES---PARVRRIVAGAASQALLAASLLPAPGAPSAGNVPDSGGAV 432 (434) T ss_pred HhcCCcHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccCCC Confidence 886 8999999999975 36788887776553322 1111 11 111222222 No 60 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=100.00 E-value=2.6e-62 Score=358.25 Aligned_cols=437 Identities=12% Similarity=0.093 Sum_probs=304.4 Q ss_pred ccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHH Q lcl|Aclame:pro 5 YISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKL 84 (479) Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ 84 (479) ++.. ......-.......+++.+...+.. +..+++++.+||+|+|++.+.+... +....+.++++||+++ T Consensus 1 ~~~~-~~~~~~gl~~~~~~~~~~L~~~~~~-~~~~~~~~~~Yy~G~~~~~~~~~~~--------p~~~r~~~~v~nw~~~ 70 (474) T protein:vir:81 1 MIQQ-QTVRIPSLSNDENALINGLLAQIEN-LRWKNLLRTSYYENKRTIQYVGTLI--------PPQYFNLGLVLGWTGK 70 (474) T ss_pred CcCC-CcCcCCCCChhHHHHHHHHHHHHHH-HhhHHHHHHHHhccCCChhhccccc--------cHHHHHHHhhcChHHH Confidence 1110 0001111111122222222222333 3447899999999999886654332 2222344678999999 Q ss_pred HHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCc--eEEEEEccceeEEEE Q lcl|Aclame:pro 85 LVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGE--FKYVIIPAEEAIPIW 162 (479) Q Consensus 85 iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~--~~i~~~~p~~~~~~~ 162 (479) +|+++++++..+|++...+++....+++.|..|+|+....++++++++|||+|+.|+.+++|. ++|++++|++++++| T Consensus 71 ~Vd~~a~rl~~~Gf~~~d~~~~~~~l~~iw~~N~ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~~~ 150 (474) T protein:vir:81 71 AVDALARRCNLEGFVWPDGDLDSLGGTEVVDDNHLLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATGEW 150 (474) T ss_pred HHHHHHhhhcccceECCCCCccchHHHHHHHhcChhHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEEEE Confidence 999999999999998755555555678888999999999999999999999999999977664 789999999999999 Q ss_pred cCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccce Q lcl|Aclame:pro 163 DSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF 242 (479) Q Consensus 163 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 242 (479) |+... .+.+++..+.. +. +.....+.+|+++.++++...++.+.. ..+..+|++| ||+ T Consensus 151 D~~~~-~~~~al~~~~~-~~-~g~~~~~~ly~~~~~~~~~~~~~~~~w------------------~~~~~~~~~g-vPv 208 (474) T protein:vir:81 151 NRRRR-GLNNLLSIIDK-DK-EGKVLSLALYLDNETVTAQRDKATLKW------------------QVDRDEHVYG-VPA 208 (474) T ss_pred eCCCC-cceeeeEEEEE-cC-CCcEEEEEEEeCCcEEEEEEcCcccee------------------eeccCCCCCC-cce Confidence 98764 56666655543 22 334566789999999888765543221 2355789998 799 Q ss_pred EEecCCC-----CCCchH-HHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh------HHHHhhcccceecC Q lcl|Aclame:pro 243 IPFKNNE-----KCVSDL-TFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE------FIDNIRYYKSIKVD 310 (479) Q Consensus 243 v~~~n~~-----~g~s~~-~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~------~~~~~~~~~~~~~~ 310 (479) |+|.|+. +|+|++ +++++|+|++|++++++....+++++|++++.|.......+ ...+...+.++.++ T Consensus 209 V~~~n~~~~~~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~~~~~d~d~~~~~~~~~~~~~i~~~~ 288 (474) T protein:vir:81 209 QVLPYKPAPKRPFGQSRITKPMMGLQDAGVRELARREGHMDVFSYPEFWLLGADESALKNADGTIKSVWEARLGRIKGLP 288 (474) T ss_pred EEecccccccCcCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeecCChhhcccccccccchhhhhHHHHhcCC Confidence 9999863 689988 69999999999999999999999999999999976433211 01111223445555 Q ss_pred CCCc--------ceeeecCCCHHHHHHHHHHHHHHH---HHHhCCCCCccc--ccc-cccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 311 GGGG--------VDKLEINIPVEAKKELLDRLEKNI---IIFGQGVNPESQ--NTG-DKSGVALKFLYSLLDLKCSKTEK 376 (479) Q Consensus 311 ~~~~--------~~~~~~~~~~~~~~~~~~~l~~~i---~~~s~~~~~~~~--~~g-~~Sg~Ai~~~~~~l~~k~~~~~~ 376 (479) ++.+ +++.+ ++..+.+.+++.++..+ ...|++|...++ ... ++||+||++++.+|..|++++++ T Consensus 289 ~d~d~~~~~~~~~~~~q--~~~a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~kae~k~~ 366 (474) T protein:vir:81 289 DDADADIPQLARADVKQ--FPAASPDAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIAEAEGAVD 366 (474) T ss_pred Ccccccccccccccccc--cCCCChhHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHHHHHHHH Confidence 5443 34433 44444455555555554 445567766554 233 47999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC--ccccceeeEEeCCCCCCCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHH Q lcl|Aclame:pro 377 KFKKAIRELLWFVCEYLKISGNK--SYDYKTVQITFNHSMIINEAEKIDMAAKST----GIVSDETIVSNHPWVEDVNDE 450 (479) Q Consensus 377 ~~~~~l~~~~~li~~~~~~~~~~--~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~----g~is~et~~~~l~~~~d~~~E 450 (479) .|+.+|++++++++.+.+..... ......+++.|.++..++.++.++++.|++ |+.+.+++++++++. +++ T Consensus 367 ~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~t---~~~ 443 (474) T protein:vir:81 367 DFTPALRKAFIRALAMKNKVAIDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLAAVPWLAETEVGLELIGLT---PQQ 443 (474) T ss_pred HHHHHHHHHHHHHHHHhCCCCccccchhhccceeEecCCCccCHHHHHHHHHHHHhcccCCCcHHHHHhhcCCC---HHH Confidence 99999999999999876643322 234568999999999999999999999985 356677888887764 356 Q ss_pred HHHHHHHHHH---HHhhhhccCCCCCCCcCC Q lcl|Aclame:pro 451 LERLKKQEDT---QKEYDDLIPNNQDGVIDE 478 (479) Q Consensus 451 l~~i~~E~~~---~~~~~~~~~~~~~~~~de 478 (479) +++++++++. ............++...| T Consensus 444 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~aq 474 (474) T protein:vir:81 444 ARRAMADKRRVQGRGTLQALIDRSNNGATAQ 474 (474) T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCCCCCC Confidence 6666655432 333333333333333333 No 61 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=100.00 E-value=1.5e-62 Score=359.46 Aligned_cols=388 Identities=9% Similarity=-0.038 Sum_probs=294.2 Q ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCee Q lcl|Aclame:pro 20 STINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIV 99 (479) Q Consensus 20 ~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~ 99 (479) -+..++..+...+.. +..|+.++.+||+|+|++++...... +..+.++|+++||++++|+++++++..++++ T Consensus 1 ~~~~~i~~L~~~~~~-~~~r~~~~~~yY~g~~~~~~~~~~~p-------~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~ 72 (409) T protein:vir:94 1 MTEKGIGYLRFKLSV-HKRRAEMRYDQYAMKYVDRFKGITIP-------QALSQQYRSILGWCAKGVDSLADRLVFREFE 72 (409) T ss_pred CCHHHHHHHHHHHHH-HhHHHHHHHHHhcccCchhhcChhhh-------HHHHHHHhhhcchhHHHHHHhHhhcccCccc Confidence 333344444444444 33578999999999998765433211 1123456778999999999999999999975 Q ss_pred ecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEee Q lcl|Aclame:pro 100 FNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYI 179 (479) Q Consensus 100 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~ 179 (479) .++. .+++.|..|+|+....++++.+++||++|+.|+.+++|.++|++++|++++++||+.. +++.+++++|.. T Consensus 73 --~~d~---~l~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~~i~~~sp~~~~~i~D~~~-~~~~~a~~~~~~ 146 (409) T protein:vir:94 73 --NDDF---TVNEIFEENNPDIFFDSAVLSSLIASCSFTYISKGENDAVRLQVIEAVNATGIIDPIT-GLLTEGYAVLER 146 (409) T ss_pred --CCch---HHHHHHHhcChhHHHHHHHHHHHHhcceeEEEecCCCCceEEEEeccceEEEEEecCC-CceeeeEEEEEe Confidence 4443 4677788899999999999999999999999999999999999999999999999864 568888887753 Q ss_pred ecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCC-----CCCch Q lcl|Aclame:pro 180 EDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE-----KCVSD 254 (479) Q Consensus 180 ~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~-----~g~s~ 254 (479) . ++.......+|+++.++++...++.+ ...+|++|+||+|+|.|+. +|+|+ T Consensus 147 d--~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~n~~g~vPvV~f~n~~~~~~~~G~s~ 202 (409) T protein:vir:94 147 D--ENNNVVLEAHFLPDRTDYYYRDSRNN----------------------ISIANPTGHPLLVPIIHRPDAVRPFGRSR 202 (409) T ss_pred c--CCCceEEEEEEecCcEEEEEecCcee----------------------EeeeCCCCCcceEEeccccccccccCccc Confidence 2 33345667889999999887655443 2347999999999999863 68999 Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCC---CcceeeecCCCHHHHHHH Q lcl|Aclame:pro 255 L-TFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGG---GGVDKLEINIPVEAKKEL 330 (479) Q Consensus 255 ~-~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 330 (479) + +.+++|+|++|++++++....+++++|++++.|.+.........+...++++.++++ .++++.+.+ ..+.+++ T Consensus 203 I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~~~~~~~~~~~~~i~~~~~d~dg~~~~v~q~~--~~~l~~~ 280 (409) T protein:vir:94 203 ITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLSDDAEPMETWKATVSSMLQFTKDEDGDKPTLGQFT--QPSMSPF 280 (409) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEecCCCCcccchhhhhHHHhhcCCCCCCCCCceEEecC--CCChhHH Confidence 8 689999999999999999999999999999999853321111222233456666543 446666554 3334455 Q ss_pred HHHHHHHHHHHh---CCCCCccccc-c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccce Q lcl|Aclame:pro 331 LDRLEKNIIIFG---QGVNPESQNT-G-DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKT 405 (479) Q Consensus 331 ~~~l~~~i~~~s---~~~~~~~~~~-g-~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~ 405 (479) ++.++..++.++ ++|...++.. . ++||+||++++.+|..+++++++.|+++|++++++++.+.+.......+..+ T Consensus 281 ~~~l~~~~~~~a~~t~lP~~~lg~~~~NpsSa~Al~a~~~~L~~~a~~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~ 360 (409) T protein:vir:94 281 TEQLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRK 360 (409) T ss_pred HHHHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccc Confidence 555555555555 5555555543 2 3799999999999999999999999999999999999887766655667788 Q ss_pred eeEEeCCCCCCC---HHHHHHHHHHHhc----cCChHHHHHhCCCCCCHH Q lcl|Aclame:pro 406 VQITFNHSMIIN---EAEKIDMAAKSTG----IVSDETIVSNHPWVEDVN 448 (479) Q Consensus 406 i~i~f~~~~p~d---~~e~a~~~~k~~g----~is~et~~~~l~~~~d~~ 448 (479) +++.|.+..|.+ .++.||+++|+++ +.+.++++.++|+..+ + T Consensus 361 ~~v~W~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~~~~~~~~~lG~~~~-d 409 (409) T protein:vir:94 361 TKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIEGG-E 409 (409) T ss_pred ceEEeccCCCcchHHHHHHHHHHHHHHHhcccccchhHHHHHcCCCCC-C Confidence 999999776665 5778899999853 5678999999998652 3 No 62 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=100.00 E-value=2.8e-61 Score=352.54 Aligned_cols=390 Identities=9% Similarity=-0.049 Sum_probs=292.5 Q ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCee Q lcl|Aclame:pro 20 STINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIV 99 (479) Q Consensus 20 ~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~ 99 (479) -+..+++.+...+.. +..|+.++.+||+|+|++++...... +..+.++|+++||++++|+++++++..++++ T Consensus 1 ~~~~~i~~L~~~~~~-~~~r~~~~~~yY~g~~~~~~~~~~~p-------~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~ 72 (409) T protein:vir:16 1 MTEKGIGYLRFKLSV-HKRRAEMRYEQYAMKHVDRFKGITIP-------QALSQQYRSILGWCAKGVDSLADRLVFREFE 72 (409) T ss_pred CCHHHHHHHHHHHHH-HhHHHHHHHHHHhccCchhhcchhhh-------HHHHHHHhhhcChhHHHHHHhHhhccccccc Confidence 333344444444444 44689999999999998765433221 1223446678899999999999999999975 Q ss_pred ecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEee Q lcl|Aclame:pro 100 FNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYI 179 (479) Q Consensus 100 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~ 179 (479) .++. .+++.|..|+|+....++++.+++||++|+.|+.+++|.++|++++|.+++++||+.. +++.+++++|.. T Consensus 73 --~~d~---~l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~~i~~~sP~~~~~i~D~~~-~~~~~a~~~~~~ 146 (409) T protein:vir:16 73 --NDDF---TVNEIFEENNPDIFFDSTVLSALIASCSFTYISKGENDAVRLQVIEATNATGIIDPIT-GLLTEGYAVLER 146 (409) T ss_pred --Ccch---HHHHHHHhcChhHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEeeccc-ccceeeeEEEEe Confidence 4443 4677788899999999999999999999999999999999999999999999999864 567777777653 Q ss_pred ecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCC-----CCCch Q lcl|Aclame:pro 180 EDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE-----KCVSD 254 (479) Q Consensus 180 ~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~-----~g~s~ 254 (479) . .+.......+|+++.++.+...++.+ ...+|++|+||+|+|.|+. .|+|+ T Consensus 147 d--~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~g~vPvV~f~n~~~~~~~~G~se 202 (409) T protein:vir:16 147 D--ENNNVVLEAHFLPDRTDYYYRDSRNN----------------------ISIANPTGNPLLVPIIHRPDAVRPFGRSR 202 (409) T ss_pred c--CCCceEEEEEEecCcEEEEEecCccc----------------------cceecCCCCcceEEecccccccccCCccc Confidence 2 23344567889999998877655433 2357999999999999863 68999 Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCC---CcceeeecC-CCHHHHHH Q lcl|Aclame:pro 255 L-TFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGG---GGVDKLEIN-IPVEAKKE 329 (479) Q Consensus 255 ~-~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~ 329 (479) + +.+++++|++|++++++....+++++|++++.|.+.............++++.++++ .++++.+.+ .+.+.+.+ T Consensus 203 I~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~~~~~~~~~~~~~i~~~~~d~~g~~~~v~q~~~~~l~~~~~ 282 (409) T protein:vir:16 203 ITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLSDDAEPMETWKATVSSMLQFTKDEDGDKPTLGQFTQPSMSPFTE 282 (409) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEecCCCCCccchhhhhhhHhhccCCCCCCCCceEEecCCCChhHHHH Confidence 8 679999999999999999999999999999999863321111223333556666543 446665543 23344444 Q ss_pred HHHHHHHHHHHHhCCCCCccccc-cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceee Q lcl|Aclame:pro 330 LLDRLEKNIIIFGQGVNPESQNT-GD-KSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQ 407 (479) Q Consensus 330 ~~~~l~~~i~~~s~~~~~~~~~~-g~-~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~ 407 (479) .++.+..++...+++|...++.. .| +||+||++++.+|..|++++++.|+.+|++++++++.+.+..+........++ T Consensus 283 ~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~ 362 (409) T protein:vir:16 283 QLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKTK 362 (409) T ss_pred HHHHHHHHHhhhcCCCHHHcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhccce Confidence 44444444445555665555543 34 79999999999999999999999999999999999988776555555567899 Q ss_pred EEeCCCCCCC---HHHHHHHHHHHhc----cCChHHHHHhCCCCCCHH Q lcl|Aclame:pro 408 ITFNHSMIIN---EAEKIDMAAKSTG----IVSDETIVSNHPWVEDVN 448 (479) Q Consensus 408 i~f~~~~p~d---~~e~a~~~~k~~g----~is~et~~~~l~~~~d~~ 448 (479) +.|.++.+.+ .++.||+++|+++ +...+++++++|+..+ + T Consensus 363 v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v~~~~~g~~~~-d 409 (409) T protein:vir:16 363 PKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIKGA-E 409 (409) T ss_pred EEecCCCCcchhhHHHHHHHHHHHHhhcccccchhHHHHhccCCCC-C Confidence 9999877554 7889999999854 4567899999998652 2 No 63 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=100.00 E-value=5e-60 Score=345.70 Aligned_cols=456 Identities=12% Similarity=0.102 Sum_probs=317.6 Q ss_pred CCCcccCcHHHHHHHHhccC-hHHHHHHHHH---HHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcce Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKES-TINLVKVIEH---YILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNK 76 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~---~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~r 76 (479) |-+--..+ |.--+.+.. ...+.+.+.+ .+......++.++++||+|+|+....+... .....+.+++ T Consensus 1 m~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~------~~~~~~~~~~ 71 (499) T protein:vir:80 1 MINQIIAG---VKGVMRRMGLLKSLKDVTDHKKVNANDEDYKYIDMWKRLYQGNYAEWHNLNYE------HNGNPVNRRQ 71 (499) T ss_pred ChhHHHHH---HHHHHHHhccccchhhhhcCCCCcCCHHHHHHHHHHHHHhcCCcchhhccccc------cCCCccccce Confidence 22211111 111121111 1122222221 123345678899999999999866543322 1233345678 Q ss_pred eecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEcc Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPA 155 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p 155 (479) +++|+++.||++.|+||+|+|++++++++..++.++.+. +|+|...+.++++.++++|.+|+.+|+|++|++++.+++| T Consensus 72 ~s~n~~~~iv~~~a~~l~~ep~~i~~~d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v~a 151 (499) T protein:vir:80 72 LSMNLPKVTAKYMSKLLFNEKVKINIDDETAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFATA 151 (499) T ss_pred eecchHHHHHHHHHHhhhCCcceEeeCCHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEEEEEECCCCcEEEEEEcC Confidence 999999999999999999999999999999999999876 4789999999999999999999999999999999999999 Q ss_pred ceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcE---EEEEE------cCCc-cccccccccccccccccc Q lcl|Aclame:pro 156 EEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDI---TYFIE------RGNS-FIQEFLYDEYGKMTDIQE 225 (479) Q Consensus 156 ~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i---~~~~~------~~~~-~~~~~~~~~~~~~~~~~~ 225 (479) ++++|++.+...-..++++.. ...+++.+++++.|+.+.. .+++. .... ....... ..+.. T Consensus 152 ~~~~Pi~~d~~~~~~~~f~~~---~~~~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l------~~~~~ 222 (499) T protein:vir:80 152 DCMYPLSNDSENVDECLIANS---FHKNNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSL------KLLFN 222 (499) T ss_pred CceEEEEecCCCeEEEEEEEE---EeecCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccch------hhhcc Confidence 999998766543333444433 3345677778887664321 12211 1111 0101100 00100 Q ss_pred cccccccccccccccceEEecCC---------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceee-------eecC Q lcl|Aclame:pro 226 GHFRINNKEQGWGKVPFIPFKNN---------EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYV-------LKEY 289 (479) Q Consensus 226 ~~~~~~~~~~~~g~vPvv~~~n~---------~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~-------~~g~ 289 (479) . .......++++++||++|+++ +.|+|+|+++++++|+||.++|++++.++....++++ ..+. T Consensus 223 ~-~~~~~~~~~~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~ 301 (499) T protein:vir:80 223 D-IEPVVPLPSLTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNL 301 (499) T ss_pred C-cCCceeecCCCccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhcccceecchhhhhccCCC Confidence 0 111222356889999999764 3599999999999999999999999999998888887 2223 Q ss_pred CccchhhHHHHhhcccceecCCC---CcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcc--cccccccHHHHHHHH Q lcl|Aclame:pro 290 PGTSLQEFIDNIRYYKSIKVDGG---GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPES--QNTGDKSGVALKFLY 364 (479) Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~--~~~g~~Sg~Ai~~~~ 364 (479) .+.....+.........+....+ ..++..+.++..+++...++.+.+.|...++.++..+ ...|+.||+++++++ T Consensus 302 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~~TAtei~s~~ 381 (499) T protein:vir:80 302 DGSTTQYFDSTDEAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEK 381 (499) T ss_pred CCCcccCCCcccceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccchhHHHHHHHH Confidence 33333333334444444433222 2466777789999999999988888887776665443 345778999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHH Q lcl|Aclame:pro 365 SLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG---NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVS 439 (479) Q Consensus 365 ~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~---~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~ 439 (479) +.+.+++..+++.|+.+|++++++|+.+....+ +...+..++++.|++++|.|..+.++..+++ +|++|+++++. T Consensus 382 ~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~et~l~ 461 (499) T protein:vir:80 382 SETYQTKNSHSQLIEQGIKEMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPLKIALQ 461 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHh Confidence 999999999999999999999999998766533 3345567899999999999999999999886 59999999999 Q ss_pred hCCCCCCHH--HHHHHHHHHHHHHHhhhhccCCCCCCCcCC Q lcl|Aclame:pro 440 NHPWVEDVN--DELERLKKQEDTQKEYDDLIPNNQDGVIDE 478 (479) Q Consensus 440 ~l~~~~d~~--~El~~i~~E~~~~~~~~~~~~~~~~~~~de 478 (479) ++++++|++ +|+++|++|+++..+..+. ... .+.+| T Consensus 462 ~~~~~~d~ea~~el~~i~~E~~~~~~~~d~--~g~-~ge~e 499 (499) T protein:vir:80 462 RAWNITEAEADEWAEMLAKEKQAEIPNNDM--TGI-FGEEE 499 (499) T ss_pred hcCCCChHHHHHHHHHHHHHhhcCCCCCCc--ccc-CCCCC Confidence 999888754 6789999887654322221 111 12222 No 64 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=100.00 E-value=2.7e-55 Score=319.75 Aligned_cols=461 Identities=16% Similarity=0.143 Sum_probs=312.8 Q ss_pred CCcccCcHHHHHHHHhcc-ChHHHHHHHHH---HHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCccee Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKE-STINLVKVIEH---YILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA 77 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~---~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri 77 (479) |.....=.+.|..-..+. -...|.+...| .+...+..|++++++||+|+|+...... .........++ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~--------~~~~~~~~~~~ 72 (508) T protein:vir:15 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQA--------SDGIKKKRLKN 72 (508) T ss_pred CChHHHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCccccccc--------CCCCcccccee Confidence 211111112222111111 12223332221 2455677899999999999997653221 11222333567 Q ss_pred ecchHHHHHHHHHhhhhccCeeecC-CchhHHHHHHHH-HhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEcc Q lcl|Aclame:pro 78 INNYHKLLVDQKVGYSVGNPIVFNA-DDDNLTKLLNDL-LGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPA 155 (479) Q Consensus 78 ~~n~~~~iv~~~a~~l~g~~~~~~~-~~~~~~~~~~~~-~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p 155 (479) ++|+++.|++..|++++++|++++. +++..++.++.+ .+|+|...+.+++..++++|.+++.+|+|. ++++|.+++| T Consensus 73 sln~~~~i~~~~A~lv~~e~~~i~v~~~~~~~e~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~~~i~~v~a 151 (508) T protein:vir:15 73 TINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRA 151 (508) T ss_pred ecchHHHHHHHHHhhhhCCCceEEeCCchHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEEeC-CeeEEEEEcC Confidence 8999999999999999999999987 556666777765 568899999999999999999999999985 6799999999 Q ss_pred ceeEEE-EcCCCCCceEEEEEEEeee-cccCceEEEEEEEe-----CCcEEEEEEcCCc---cccccccccccccccccc Q lcl|Aclame:pro 156 EEAIPI-WDSKRQRELVAFIRFYYIE-DIDGNKIKRVEYYT-----ENDITYFIERGNS---FIQEFLYDEYGKMTDIQE 225 (479) Q Consensus 156 ~~~~~~-~d~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~y~-----~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 225 (479) ++++|+ |+... ...+++++.+... ...++.+++++.|+ +..|.+....... ............+..+. T Consensus 152 d~~~P~~~d~~~-~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~- 229 (508) T protein:vir:15 152 DQFYPLQSNTND-ISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA- 229 (508) T ss_pred CeeEEEEEcCCC-eEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccCCC- Confidence 999997 55443 2233333333333 33455677888887 3344433333211 11111111111111111 Q ss_pred cccccccccccccccceEEecC---------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC---Cccc Q lcl|Aclame:pro 226 GHFRINNKEQGWGKVPFIPFKN---------NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY---PGTS 293 (479) Q Consensus 226 ~~~~~~~~~~~~g~vPvv~~~n---------~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~---~~~~ 293 (479) .....+++.++||++|++ ++.|+|+|+++++++|++|.++|+++++++....++++..++ ++.. T Consensus 230 ----~~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~d~~~ 305 (508) T protein:vir:15 230 ----PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEH 305 (508) T ss_pred ----cceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcCCCCC Confidence 122335778889998865 246999999999999999999999999999888887773332 2222 Q ss_pred hhhHHHHhhcccceecCC--CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccc--ccccccHHHHHHHHHHHHH Q lcl|Aclame:pro 294 LQEFIDNIRYYKSIKVDG--GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQ--NTGDKSGVALKFLYSLLDL 369 (479) Q Consensus 294 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~--~~g~~Sg~Ai~~~~~~l~~ 369 (479) ...+..+......+..+. +..++.+++++..+++.+.++.+.+.|...++.++..++ ..|..||++++++++.+.+ T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~~TAtei~s~~~~~~~ 385 (508) T protein:vir:15 306 KPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQ 385 (508) T ss_pred ccccCCCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCccccHHHHHHHHHHHHH Confidence 112222222233333333 344778888999999999999999888887766654443 3466799999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------ccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHH Q lcl|Aclame:pro 370 KCSKTEKKFKKAIRELLWFVCEYLKISGNK-----------SYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDET 436 (479) Q Consensus 370 k~~~~~~~~~~~l~~~~~li~~~~~~~~~~-----------~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et 436 (479) ++.++++.|+.+|++++++|+.++...+.. .....+++|.|+++++.|..+.++..+++ +|++|+++ T Consensus 386 t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~v~aGi~s~e~ 465 (508) T protein:vir:15 386 TRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQT 465 (508) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHH Confidence 999999999999999999999887654311 12345689999999999999999988885 69999999 Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCCcC Q lcl|Aclame:pro 437 IVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVID 477 (479) Q Consensus 437 ~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~~d 477 (479) +++++++++| +++|++||++|+.+............++.++ T Consensus 466 ~i~~~~g~~deea~~el~ri~~E~~~~~~~~~~~~~~~g~~ge 508 (508) T protein:vir:15 466 FLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) T ss_pred HHHhcCCCChHHHHHHHHHHHHhccccCccccccccCCCCCCC Confidence 9999998876 5679999999987654444333333333333 No 65 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=100.00 E-value=6.7e-55 Score=317.57 Aligned_cols=451 Identities=15% Similarity=0.172 Sum_probs=308.6 Q ss_pred Cc-HHHHHHHHhc----cC-hHHHHHHHHH---HHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCccee Q lcl|Aclame:pro 7 SE-TDLIKVQLKK----ES-TINLVKVIEH---YILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA 77 (479) Q Consensus 7 ~~-~~~~~~~~~~----~~-~~~~~~~i~~---~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri 77 (479) |- -+.|+.-+++ .+ ...|.+...+ .+...++.+++++++||+|+|+.+..... ....+..+++ T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~i~~~~~~Y~g~~~~l~~~~~--------~~~~~~~~~~ 72 (505) T protein:vir:79 1 MAFWDTLKNLFRKGSAAVGMTKSLGQIIDDPRINLPADEVERIARDKRYYMDDFKQVTHKNS--------YGDTQKHELQ 72 (505) T ss_pred CchHHHHHHHHHHhhhhhcchhhhhhhhcccCCCCCHHHHHHHHHHHHHhcCCCcccccccc--------CCCcccccee Confidence 22 1222222222 11 1222221111 13445667888999999999986643221 1222344678 Q ss_pred ecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccc Q lcl|Aclame:pro 78 INNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAE 156 (479) Q Consensus 78 ~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~ 156 (479) ++|+++.||++.|+|++++|++++.+++..++.++.+. +|+|...+.+++..++++|.+++.+|+| .|+++|.+++|+ T Consensus 73 slnl~~~i~~~~A~ll~~e~~~i~~~d~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~~~k~~~D-~~~~~i~~v~ad 151 (505) T protein:vir:79 73 SVNVTKLASAKLASLIFNEQCQVTVSDETANDFLDDVFQQNDFYTTFEEKLEEWIALGSGCVRPYVD-SGKIKLAWATAD 151 (505) T ss_pred ecchHHHHHHHHHhhhcCCCceeecCChHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCeEEEEEEe-CCceEEEEEcCC Confidence 89999999999999999999999999999999998865 5789999999999999999999999998 478999999999 Q ss_pred eeEEEEcCCCCCceEEEEEEEeee-cccCceEEEEEEEeCCcEEEE----EEcC--Cc-ccccccccccccccccccccc Q lcl|Aclame:pro 157 EAIPIWDSKRQRELVAFIRFYYIE-DIDGNKIKRVEYYTENDITYF----IERG--NS-FIQEFLYDEYGKMTDIQEGHF 228 (479) Q Consensus 157 ~~~~~~d~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~y~~~~i~~~----~~~~--~~-~~~~~~~~~~~~~~~~~~~~~ 228 (479) +++|++.+......++++..|... ...+..++++++|+.+...++ .... .. ....+.......+.++.+ T Consensus 152 ~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~--- 228 (505) T protein:vir:79 152 QVYPLQADTNQVNELAIASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPLNSLEQYEGLEP--- 228 (505) T ss_pred eeEEEEEcCCCeEEEEEEEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccchhhcccccccCc--- Confidence 999985444343344444444433 333445778899985443222 2221 11 111111111111112211 Q ss_pred ccccccccccccceEEecCC---------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC------Cccc Q lcl|Aclame:pro 229 RINNKEQGWGKVPFIPFKNN---------EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY------PGTS 293 (479) Q Consensus 229 ~~~~~~~~~g~vPvv~~~n~---------~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~------~~~~ 293 (479) ....+++.++||++|+|+ +.|+|+|+++++++|++|.++|+++++++....++++-..+ ++.. T Consensus 229 --~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~~ 306 (505) T protein:vir:79 229 --QVKITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRRLIVPAEWLKTGSSYGGQ 306 (505) T ss_pred --ceeecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcccCCCCcc Confidence 122256777778877652 36999999999999999999999999999988888772211 1111 Q ss_pred hhh-----HHHHhhcccceecC-CCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCC--cccccccccHHHHHHHHH Q lcl|Aclame:pro 294 LQE-----FIDNIRYYKSIKVD-GGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNP--ESQNTGDKSGVALKFLYS 365 (479) Q Consensus 294 ~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~--~~~~~g~~Sg~Ai~~~~~ 365 (479) ... +..+......+..+ +++.++..++++..+++...++.+.+.|...++.+.. ++...|..||++++++++ T Consensus 307 ~~~~~~~~fd~~~~~y~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~s~~~ 386 (505) T protein:vir:79 307 ASETHPPMFDPDETVYQAMYGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPSGIQTATEVVTNNS 386 (505) T ss_pred cccccccCCCccceeeeeccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCccccchHHHHHHHHh Confidence 000 11111222222222 2345677788889999999999988888877765544 333456689999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCCh Q lcl|Aclame:pro 366 LLDLKCSKTEKKFKKAIRELLWFVCEYLKISGN---------KSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSD 434 (479) Q Consensus 366 ~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~---------~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~ 434 (479) .+.+++.++++.|+.+|+++++.|+.+....+. .+.+..+++|.|++.++.|..+.++..+++ +|++|+ T Consensus 387 ~l~~t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~v~~Gi~s~ 466 (505) T protein:vir:79 387 QTYQTRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESKRAADLQAVQAQVMPK 466 (505) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCCH Confidence 999999999999999999999999988765432 234456799999999999999999988875 689999 Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCC Q lcl|Aclame:pro 435 ETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGV 475 (479) Q Consensus 435 et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~ 475 (479) +++++++++++| +++|++||++|+....+. ++...|. T Consensus 467 e~~l~~~~~~~eeea~~el~ri~~E~~~~~p~----~~~~gg~ 505 (505) T protein:vir:79 467 KQFLMRNYGLDEEEADEWLAQIDAENSTAEPE----FNQFGGD 505 (505) T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhccccCCC----chhccCC Confidence 999999999987 667899999987542211 1222222 No 66 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=100.00 E-value=6.9e-53 Score=306.54 Aligned_cols=457 Identities=12% Similarity=0.087 Sum_probs=303.6 Q ss_pred CCcccCcHHHHHHHHhccChHHHHHHHHH---HHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceee Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKESTINLVKVIEH---YILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 78 (479) |+...-=.+.|..-...+...++.+...+ .+...++.+|+++++||+|+++.+.... ..+..+..++++ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~--------~~~~~~~~~~~s 72 (500) T protein:vir:30 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLN--------TDGETKKRDLNH 72 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCccccc--------CCCCcccCceee Confidence 22222222233222223334445544433 2556678899999999999976543211 112334556788 Q ss_pred cchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccce Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEE 157 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~ 157 (479) +|+++.|+++.|+++|++|++++++++..++.++.+. +|+|...+.+++..++++|.+++.+|+|. ++++|.+++|++ T Consensus 73 lnl~~~i~~~~A~lv~~e~~~i~~~d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~~~I~~v~ad~ 151 (500) T protein:vir:30 73 LPIARTAAKKIASLVFNEQAEIKVDDDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDG-DKVRVAFVQAPV 151 (500) T ss_pred cchHHHHHHHHhhhhcCCcceEecCChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeC-CceEEEEEcCCe Confidence 9999999999999999999999999999999998875 57899999999999999999999999984 689999999999 Q ss_pred eEEEEcCCCCCceEEEEEE-EeeecccCceEEEEEEEeC--C---cEEEEEEcCCc---ccccccccccccccccccccc Q lcl|Aclame:pro 158 AIPIWDSKRQRELVAFIRF-YYIEDIDGNKIKRVEYYTE--N---DITYFIERGNS---FIQEFLYDEYGKMTDIQEGHF 228 (479) Q Consensus 158 ~~~~~d~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~y~~--~---~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 228 (479) ++|+..+.......+++.. +...+..+..+++++.|+. + .|.+....+.. ......... . +..+ T Consensus 152 ~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~-~-~~~l----- 224 (500) T protein:vir:30 152 FLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSE-V-YKDL----- 224 (500) T ss_pred eEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCccccccc-c-cCCc----- Confidence 9998555444333333322 2222333445677888862 2 23333322211 111111100 0 1111 Q ss_pred ccccccccccccceEEecC---------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC--------Cc Q lcl|Aclame:pro 229 RINNKEQGWGKVPFIPFKN---------NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY--------PG 291 (479) Q Consensus 229 ~~~~~~~~~g~vPvv~~~n---------~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~--------~~ 291 (479) ......+++.++||++|++ ++.|+|+|+++++++|++|.++|+++++++....++++...+ ++ T Consensus 225 ~~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g 304 (500) T protein:vir:30 225 KDEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPESLTALTVRTTDG 304 (500) T ss_pred CcceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeechHHhcccCCCCCc Confidence 1122335667777877754 245999999999999999999999999999988887773322 11 Q ss_pred cchhhHHHH--hhcccceecC--CCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCC--cccccccccHHHHHHHHH Q lcl|Aclame:pro 292 TSLQEFIDN--IRYYKSIKVD--GGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNP--ESQNTGDKSGVALKFLYS 365 (479) Q Consensus 292 ~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~--~~~~~g~~Sg~Ai~~~~~ 365 (479) ......... ......+... ++..++..++++..+++...++.+.+.+...++.++. +....|..||++++++++ T Consensus 305 ~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~ 384 (500) T protein:vir:30 305 DVVPRPRFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENS 384 (500) T ss_pred cccCCcccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHH Confidence 111111111 1111122222 2234677778888898888888877777555543333 333456789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHh Q lcl|Aclame:pro 366 LLDLKCSKTEKKFKKAIRELLWFVCEYLKIS---GNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSN 440 (479) Q Consensus 366 ~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~---~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~ 440 (479) .+.+++.++++.|+.+|++++++|+.+.... ++......+++|.|+++++.|..+.++.++++ +|++|+++++.+ T Consensus 385 ~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~ 464 (500) T protein:vir:30 385 DTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQK 464 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHh Confidence 9999999999999999999999999876543 33333445789999999999999999988885 689999999988 Q ss_pred CCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCCcC Q lcl|Aclame:pro 441 HPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVID 477 (479) Q Consensus 441 l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~~d 477 (479) +.++++ +++|+++|++|+..+. +......+-.++ T Consensus 465 ~~g~~eeea~~~l~~i~~E~~~~~---~~~~~~~~~~g~ 500 (500) T protein:vir:30 465 VLNVTEEKAQEIAAEINTGIVDEI---NQQRTDTHLYGE 500 (500) T ss_pred cCCCCHHHHHHHHHHHHHhccccC---CCCCccccccCC Confidence 866665 4456778876643221 222222222222 No 67 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=100.00 E-value=6.9e-53 Score=306.54 Aligned_cols=457 Identities=12% Similarity=0.087 Sum_probs=303.6 Q ss_pred CCcccCcHHHHHHHHhccChHHHHHHHHH---HHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceee Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKESTINLVKVIEH---YILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 78 (479) |+...-=.+.|..-...+...++.+...+ .+...++.+|+++++||+|+++.+.... ..+..+..++++ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~--------~~~~~~~~~~~s 72 (500) T protein:vir:98 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLN--------TDGETKKRDLNH 72 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCccccc--------CCCCcccCceee Confidence 22222222233222223334445544433 2556678899999999999976543211 112334556788 Q ss_pred cchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccce Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEE 157 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~ 157 (479) +|+++.|+++.|+++|++|++++++++..++.++.+. +|+|...+.+++..++++|.+++.+|+|. ++++|.+++|++ T Consensus 73 lnl~~~i~~~~A~lv~~e~~~i~~~d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~~~I~~v~ad~ 151 (500) T protein:vir:98 73 LPIARTAAKKIASLVFNEQAEIKVDDDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDG-DKVRVAFVQAPV 151 (500) T ss_pred cchHHHHHHHHhhhhcCCcceEecCChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeC-CceEEEEEcCCe Confidence 9999999999999999999999999999999998875 57899999999999999999999999984 689999999999 Q ss_pred eEEEEcCCCCCceEEEEEE-EeeecccCceEEEEEEEeC--C---cEEEEEEcCCc---ccccccccccccccccccccc Q lcl|Aclame:pro 158 AIPIWDSKRQRELVAFIRF-YYIEDIDGNKIKRVEYYTE--N---DITYFIERGNS---FIQEFLYDEYGKMTDIQEGHF 228 (479) Q Consensus 158 ~~~~~d~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~y~~--~---~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 228 (479) ++|+..+.......+++.. +...+..+..+++++.|+. + .|.+....+.. ......... . +..+ T Consensus 152 ~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~-~-~~~l----- 224 (500) T protein:vir:98 152 FLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSE-V-YKDL----- 224 (500) T ss_pred eEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCccccccc-c-cCCc----- Confidence 9998555444333333322 2222333445677888862 2 23333322211 111111100 0 1111 Q ss_pred ccccccccccccceEEecC---------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC--------Cc Q lcl|Aclame:pro 229 RINNKEQGWGKVPFIPFKN---------NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY--------PG 291 (479) Q Consensus 229 ~~~~~~~~~g~vPvv~~~n---------~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~--------~~ 291 (479) ......+++.++||++|++ ++.|+|+|+++++++|++|.++|+++++++....++++...+ ++ T Consensus 225 ~~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g 304 (500) T protein:vir:98 225 KDEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPESLTALTVRTTDG 304 (500) T ss_pred CcceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeechHHhcccCCCCCc Confidence 1122335667777877754 245999999999999999999999999999988887773322 11 Q ss_pred cchhhHHHH--hhcccceecC--CCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCC--cccccccccHHHHHHHHH Q lcl|Aclame:pro 292 TSLQEFIDN--IRYYKSIKVD--GGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNP--ESQNTGDKSGVALKFLYS 365 (479) Q Consensus 292 ~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~--~~~~~g~~Sg~Ai~~~~~ 365 (479) ......... ......+... ++..++..++++..+++...++.+.+.+...++.++. +....|..||++++++++ T Consensus 305 ~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~ 384 (500) T protein:vir:98 305 DVVPRPRFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENS 384 (500) T ss_pred cccCCcccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHH Confidence 111111111 1111122222 2234677778888898888888877777555543333 333456789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHh Q lcl|Aclame:pro 366 LLDLKCSKTEKKFKKAIRELLWFVCEYLKIS---GNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSN 440 (479) Q Consensus 366 ~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~---~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~ 440 (479) .+.+++.++++.|+.+|++++++|+.+.... ++......+++|.|+++++.|..+.++.++++ +|++|+++++.+ T Consensus 385 ~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~ 464 (500) T protein:vir:98 385 DTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQK 464 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHh Confidence 9999999999999999999999999876543 33333445789999999999999999988885 689999999988 Q ss_pred CCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCCcC Q lcl|Aclame:pro 441 HPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVID 477 (479) Q Consensus 441 l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~~d 477 (479) +.++++ +++|+++|++|+..+. +......+-.++ T Consensus 465 ~~g~~eeea~~~l~~i~~E~~~~~---~~~~~~~~~~g~ 500 (500) T protein:vir:98 465 VLNVTEEKAQEIAAEINTGIVDEI---NQQRTDTHLYGE 500 (500) T ss_pred cCCCCHHHHHHHHHHHHHhccccC---CCCCccccccCC Confidence 866665 4456778876643221 222222222222 No 68 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=100.00 E-value=3.5e-52 Score=302.71 Aligned_cols=464 Identities=15% Similarity=0.141 Sum_probs=312.3 Q ss_pred CCcccCcHHHHHHHHhccChHHHHHHHHH---HHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceee Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKESTINLVKVIEH---YILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 78 (479) |+.+..=.+.|..-..+.....+.+...+ .+...+..+|.+.+.||+|+++...... ........++++ T Consensus 1 m~~~~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~--------~~~~~~~~~~~s 72 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKN--------TDGDIKSRPMNH 72 (522) T ss_pred CchHHHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccc--------cCcchhccccee Confidence 55554445555544444444444433222 1355677889999999999876442111 112223345788 Q ss_pred cchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccce Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEE 157 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~ 157 (479) +|+++.|++..|+++|++|++++++++..++.++.+. +|+|...+.+++..++..|.+++.+|+| .++++|.+++|++ T Consensus 73 lnl~~~i~~~~A~lv~~e~~~i~v~d~~~~~~l~~~l~~n~f~~~~~~~~e~a~a~G~~a~k~~~d-~~~~~i~~v~ad~ 151 (522) T protein:vir:47 73 LPIARTASKKIASLVYNEQATITTKNEILQKFLDDMLTNDRFNKNFERYLESCLALGGLAMRPYID-GDKVRVAFIQAPV 151 (522) T ss_pred cchHHHHHHHHhhhhcCCcceeecCChHHHHHHHHHHhhcchHHHHHHHHHHhhccCCEEEEEEEc-CCceEEEEEcCCc Confidence 9999999999999999999999999999999998765 5889999999999999999999999998 5789999999999 Q ss_pred eEEEEcCCCC-CceEEEEEEEeeecccCceEEEEEEEeC----------------CcEEEEEEcCC---ccccccccccc Q lcl|Aclame:pro 158 AIPIWDSKRQ-RELVAFIRFYYIEDIDGNKIKRVEYYTE----------------NDITYFIERGN---SFIQEFLYDEY 217 (479) Q Consensus 158 ~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~y~~----------------~~i~~~~~~~~---~~~~~~~~~~~ 217 (479) ++|+..++.. .+...+.+.+...+..+..++.++.|.. ..|.+....+. .....+..... T Consensus 152 ~~P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~ 231 (522) T protein:vir:47 152 FFPLESNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLSEL 231 (522) T ss_pred eEEEEEcCCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCcccccccc Confidence 9998443332 2222222222222222334555677642 12222111111 11111111111 Q ss_pred cccccccccccccccccccccccceEEecCC---------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeec Q lcl|Aclame:pro 218 GKMTDIQEGHFRINNKEQGWGKVPFIPFKNN---------EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKE 288 (479) Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~---------~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g 288 (479) ..+..+.+ ....+++.+++|++|+++ +.|+|+|+++++++|++|.++|+++++++....++++-.. T Consensus 232 ~e~~~l~~-----~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~ 306 (522) T protein:vir:47 232 DKYKNLEP-----VTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIVPEH 306 (522) T ss_pred ccccCCCC-----ceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchH Confidence 12222221 123356778888888653 4699999999999999999999999999999988877322 Q ss_pred C--------Cccch--hhHHHHhhcccceec--CCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCC--Cccccccc Q lcl|Aclame:pro 289 Y--------PGTSL--QEFIDNIRYYKSIKV--DGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVN--PESQNTGD 354 (479) Q Consensus 289 ~--------~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~--~~~~~~g~ 354 (479) + ++... ..+.........+.. .++++++.+++++..+.+.+.++.+.+.|...++... ++....|. T Consensus 307 ~l~~~~~~~~g~~~~~~~fd~~~~~f~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~~~~~ 386 (522) T protein:vir:47 307 LTQRQYQRPDGTIDFRPRFDVEQNVYMQIGGSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFDGQGM 386 (522) T ss_pred HhccCCCCCCcccccccccCcccceEeecCCCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCcccccc Confidence 1 11110 011111111222222 2345678888889999888888887777655544333 33334466 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccccceeeEEeCCCCCCCHHHHHHHHHHH--h Q lcl|Aclame:pro 355 KSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS---GNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--T 429 (479) Q Consensus 355 ~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~---~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~ 429 (479) .||++++++.+.+.+++.++++.++.+|+++++.|+.++... ++......+++|.|+++++.|..+.++..+++ + T Consensus 387 kTAtEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~~~~~~~~~~v~a 466 (522) T protein:vir:47 387 KTATEIVSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRHAELDYWAKMVAA 466 (522) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHHHHHHHHHHHHhc Confidence 799999999999999999999999999999999999877643 34445566799999999999999999988885 6 Q ss_pred ccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCC---CCCCcCCC Q lcl|Aclame:pro 430 GIVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNN---QDGVIDET 479 (479) Q Consensus 430 g~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~---~~~~~det 479 (479) |++|+++++.+++++++ +++|++||++|+.++.+......+. +.+.+||- T Consensus 467 G~~s~e~~i~~~~g~~eeea~~el~ri~~E~~~~~~~~~~~~~~~~~~~~~~d~~ 521 (522) T protein:vir:47 467 GFSTKKRAIGKTLNISGVEAEKELNAINSELLPMNDAELAIYGMHDQNEEKADDK 521 (522) T ss_pred CCCCHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccccCCCC Confidence 99999999999877876 5679999999877654443333222 22333333 No 69 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=100.00 E-value=1.6e-47 Score=277.14 Aligned_cols=461 Identities=12% Similarity=0.083 Sum_probs=302.5 Q ss_pred CCcccCcHHHHHHHHh---ccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceee Q lcl|Aclame:pro 2 LNIYISETDLIKVQLK---KESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 78 (479) |+....=.+.+..-.. ..+...+.+.+.-.+......|+.++++||+|+++..+... .....+..++.+ T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~~~~--------~~~~~~~~~~~s 72 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYIN--------SQGKIQERDYMT 72 (517) T ss_pred CchHHHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHHHhcCCCccccccc--------ccccccccceee Confidence 2222111222222111 22333333322223444456788899999999997553211 122233445788 Q ss_pred cchHHHHHHHHHhhhhccCeeecCCch-----------hHHHHHHHH-HhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCC Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGNPIVFNADDD-----------NLTKLLNDL-LGEEFDDTITELYLNASNKGVEWLHPYINRKG 146 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~~~~~~~~~~-----------~~~~~~~~~-~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~ 146 (479) +|+++.|+..+|+++|+++++++.++. ..++.|+.+ .+|+|...+.+.+..++..|.+++.+|+|. + T Consensus 73 l~~~~~i~~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~-~ 151 (517) T protein:vir:98 73 LNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-G 151 (517) T ss_pred cCcHHHHHHHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEeC-C Confidence 999999999999999999999877643 245667654 568899999999999999999999999984 7 Q ss_pred ceEEEEEccceeEEEEcCCCCCceEEEEEE--EeeecccCceEEEEEEEeCCcEE------E-----EEEcCCcc-cccc Q lcl|Aclame:pro 147 EFKYVIIPAEEAIPIWDSKRQRELVAFIRF--YYIEDIDGNKIKRVEYYTENDIT------Y-----FIERGNSF-IQEF 212 (479) Q Consensus 147 ~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~y~~~~i~------~-----~~~~~~~~-~~~~ 212 (479) +++|.+++|++++|+-.+.. +...+++.+ +...+..+..+++++.|..+++. + |....... ...+ T Consensus 152 ~~~I~~v~ad~~~Pl~~~~~-~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v 230 (517) T protein:vir:98 152 EIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRI 230 (517) T ss_pred eeEEEEEcCCeeEEEEecCC-CeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCccccccc Confidence 89999999999999633332 233333322 22333334467788999877532 1 22111111 1111 Q ss_pred ccccccccccccccccccccccccccccceEEecC---------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 213 LYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN---------NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVI 283 (479) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n---------~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~ 283 (479) ..... +.++. ....-+++.+++|++|++ ++.|+|+|+++++++|++|..+|+++++++....++ T Consensus 231 ~L~~~--~e~l~-----~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~~i 303 (517) T protein:vir:98 231 PLEEL--YEGMQ-----EKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTV 303 (517) T ss_pred ccccc--ccCCC-----cceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCcce Confidence 11100 11111 112334566666777754 246999999999999999999999999999988887 Q ss_pred eeeecCCccchh--------hHHHHhhcccceecC-CCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccc--cc Q lcl|Aclame:pro 284 YVLKEYPGTSLQ--------EFIDNIRYYKSIKVD-GGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQ--NT 352 (479) Q Consensus 284 l~~~g~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~--~~ 352 (479) .+...+-....+ -+..+......+..+ +++.++..++++..+++.+.++.+-+.|...++.+...++ .. T Consensus 304 ~vp~~~l~~~~~~~g~~~~~~~d~~~~~y~~~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~~~ 383 (517) T protein:vir:98 304 FVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) T ss_pred ecChhhhccccCCCCcccCCCCCcccceeeeccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCccccccccc Confidence 774332111100 011111222222222 2334566667888899999999988888777766654444 34 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccccceeeEEeCCCCCCCHHHHHHHHHHH- Q lcl|Aclame:pro 353 GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKI---SGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS- 428 (479) Q Consensus 353 g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~- 428 (479) |..||+++++..+.+.+++.++++.++.+|++++++++.+... .++......+++|.|+++++.|..+.++..+++ T Consensus 384 ~~kTATEi~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~~~v 463 (517) T protein:vir:98 384 SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHHHHH Confidence 5578999999999999999999999999999999999877654 334444556799999999999999999988885 Q ss_pred -hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 429 -TGIVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 429 -~g~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) +|++|+++++.++.++++ +++|++||++|+.+..+.....+.++.-.+|+- T Consensus 464 ~aG~ms~~~~i~~~~g~~eeeA~~e~~~i~~E~~~~~~~~~~~~~~~~~~gd~e 517 (517) T protein:vir:98 464 TFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) T ss_pred hcCCCCHHHHHHHhCCCChHHHHHHHHHHHHhccccCCCCccccccCCCCCCCC Confidence 789999999988766665 467899999888755444333333322222222 No 70 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=100.00 E-value=1.8e-47 Score=276.87 Aligned_cols=455 Identities=15% Similarity=0.051 Sum_probs=284.9 Q ss_pred CCcccCcHHHHHHHHhccChH-HHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccccccc-ccccccccccCcceeec Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKESTI-NLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLL-DGAKVDDFTKVNNKAIN 79 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~-~~~~~~~~~~~~~ri~~ 79 (479) |++. |.++.+...--+..+. .-.+++ ..+.++|.++...-.+ +++.. -....-.+....+++++ T Consensus 1 ~~~~-~~~~~~i~~w~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~ 66 (518) T protein:vir:78 1 MGVW-SVMTRFIKGWLNGKPNGSEPELI------------PKYLPLVPDNQKEWSK-DSYLTSLWAQGYVPTVHDKLMNS 66 (518) T ss_pred Ccch-hhHHHHHHHhhcCCCCccchhcc------------HHHhhhcccchhhhhh-hhhhhhhcccCCCCccccccccC Confidence 5553 3333333333332222 122222 2222222222110000 00000 00000112334567899 Q ss_pred chHHHHHHHHHhhhhccCeeecC------CchhHHHHHHHH-HhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEE Q lcl|Aclame:pro 80 NYHKLLVDQKVGYSVGNPIVFNA------DDDNLTKLLNDL-LGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVI 152 (479) Q Consensus 80 n~~~~iv~~~a~~l~g~~~~~~~------~~~~~~~~~~~~-~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~ 152 (479) |+++.|++..|+++|+++++++. +++..++.++.+ .+|+|...+.+.+..+++.|.+++.++++ +|+++|.+ T Consensus 67 ~l~~~i~~~~A~ll~~e~~~i~v~~~~~~d~e~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d-~~~~~i~~ 145 (518) T protein:vir:78 67 GTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISV 145 (518) T ss_pred ChHHHHHHHHHHhhcCCCceEEecCccccCcHHHHHHHHHHHHhccHHHHHHHHHHHhhccCceEEEEEEE-CCeeEEEE Confidence 99999999999999999998754 456677888775 56889999999999999999999999997 58899999 Q ss_pred EccceeEEEEcCCCCCceEEEEEEEeeeccc-CceEEEEEEEeCCcEEEEEEcCCcccccccc----------------c Q lcl|Aclame:pro 153 IPAEEAIPIWDSKRQRELVAFIRFYYIEDID-GNKIKRVEYYTENDITYFIERGNSFIQEFLY----------------D 215 (479) Q Consensus 153 ~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~----------------~ 215 (479) ++|.+++|+|.++. +..++.+......+ +..+++++.|..+.+.+.....+........ . T Consensus 146 v~ad~~~P~~~~g~---~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~ 222 (518) T protein:vir:78 146 HSSSQFWIDFKNNE---PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLP 222 (518) T ss_pred EcCCeeEEEeecCc---EEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCcccccccccccc Confidence 99999999998754 33333333333333 2345667777655443322211111110000 0 Q ss_pred cccccccccccccccccccccccccceEEec-C---------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceee Q lcl|Aclame:pro 216 EYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-N---------NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYV 285 (479) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-n---------~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~ 285 (479) ..........+.......+++ ...|++.+. | ++.|+|+|+++++++|++|.++|+++++++....++++ T Consensus 223 ~~l~~~~~~~~~~e~~~~~tg-~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v 301 (518) T protein:vir:78 223 EQITSYLHTNDIQLNHSVSIG-LKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAA 301 (518) T ss_pred cccccccccccCccceeeccC-CccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHhCCceeee Confidence 000000000111111112233 345655553 2 23499999999999999999999999999998888877 Q ss_pred eecCC-----c---cchhhHHHHhhcccceecC--CCCc----ceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccc Q lcl|Aclame:pro 286 LKEYP-----G---TSLQEFIDNIRYYKSIKVD--GGGG----VDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQN 351 (479) Q Consensus 286 ~~g~~-----~---~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~ 351 (479) ...+- + .....+..+......+... .+++ ++.++++++.+++...++.+.+.|...++.++..++. T Consensus 302 ~~~~l~~~~~~~~~~~~~~fd~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~ 381 (518) T protein:vir:78 302 SERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNL 381 (518) T ss_pred chhHhccCCCCCCCccccccCCCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhhcCc Confidence 43221 1 1111122222223333222 2222 5667788999999998888888887766655444432 Q ss_pred -cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----ccccceeeEEeCCCCCCCHHHHHHHH Q lcl|Aclame:pro 352 -TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNK-----SYDYKTVQITFNHSMIINEAEKIDMA 425 (479) Q Consensus 352 -~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~-----~~~~~~i~i~f~~~~p~d~~e~a~~~ 425 (479) .+..||+++++..+++.+++.++++.++.+|++++++++.+++...+. ..+...++|.|++.++.|..+.++.+ T Consensus 382 ~~~~~TATei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~~~ 461 (518) T protein:vir:78 382 GNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTL 461 (518) T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHHHHHHH Confidence 346899999999999999999999999999999999999988865432 23445789999999999999999998 Q ss_pred HHH--hccCChHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHh--hhhccCCCCCCC Q lcl|Aclame:pro 426 AKS--TGIVSDETIVSN-HPWVED--VNDELERLKKQEDTQKE--YDDLIPNNQDGV 475 (479) Q Consensus 426 ~k~--~g~is~et~~~~-l~~~~d--~~~El~~i~~E~~~~~~--~~~~~~~~~~~~ 475 (479) +++ +|++|+++++++ .|+++| +++|++||++|++.... ..+...-+.+|+ T Consensus 462 ~~~v~aGimS~e~~i~~~~~~~~deea~~e~~ri~~E~~~~~~~~p~~~~g~~~~~g 518 (518) T protein:vir:78 462 NNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) T ss_pred HHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCccccCCCCCCC Confidence 874 699999999987 466765 56899999999875432 222222233333 No 71 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=100.00 E-value=9.1e-46 Score=267.51 Aligned_cols=466 Identities=13% Similarity=0.126 Sum_probs=309.9 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |. |.--.=....++. ....++...|.. ..+.|+.+|+.|.+||.|++..+..... .+. . +-..++.+| T Consensus 1 ~~--~~~~~~~~~~~~~-~g~~~~p~~v~~-~d~~Rl~aY~l~~~~y~n~~~~~~~~lr----g~~-~---~~~r~~~~p 68 (527) T protein:vir:10 1 MG--QDKRQYGSTQQLR-AGEANFPNAVTD-FDKARLASYRLYEDMYLTNTSDYQVILR----GGD-E---GDQRPIYVP 68 (527) T ss_pred CC--ccccccCCCcCcC-CccccCcccCCH-HHHHHHHHHHHHHHHhcCchhheeeecC----Ccc-c---cccceeeeh Confidence 21 1110111122332 223334444543 5677889999999999998754432111 011 0 111235566 Q ss_pred hHHHHHHHHHhhhhccCeee--cCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCC----CceEEEEE Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGNPIVF--NADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRK----GEFKYVII 153 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~~~~~--~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~----~~~~i~~~ 153 (479) -.+.|+...-.+ .+.|..+ +..++.++..++.|. .|++..++.+..+++.+.|.+.+++-+|+. ++++++.+ T Consensus 69 s~~~~~~~~~~~-~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~~v~~~ 147 (527) T protein:vir:10 69 NGEKLIEAKMRF-LGQGLKWEFSKKDAKVDDAIKVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) T ss_pred hhHHhhCCccee-eccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCceEeec Confidence 666666655433 3344432 334567888888874 589999999999999999998888777742 47999999 Q ss_pred ccceeEEEEcCCCCCceEEE--EEEEeeecccCceEEEEEE----EeC--------CcEEEEEE---cCCcccccccccc Q lcl|Aclame:pro 154 PAEEAIPIWDSKRQRELVAF--IRFYYIEDIDGNKIKRVEY----YTE--------NDITYFIE---RGNSFIQEFLYDE 216 (479) Q Consensus 154 ~p~~~~~~~d~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~----y~~--------~~i~~~~~---~~~~~~~~~~~~~ 216 (479) ||.+.|++.|+...+.+..+ +.-|...+.....+..+.+ |.- .+-..|.. .-+.|....+... T Consensus 148 DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~~e~p~ 227 (527) T protein:vir:10 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPL 227 (527) T ss_pred CcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeecccccccccccc Confidence 99999999888766666554 3335555444433221110 110 11111110 0011100000000 Q ss_pred ccccccccccccccccccccccccceEEecC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc Q lcl|Aclame:pro 217 YGKMTDIQEGHFRINNKEQGWGKVPFIPFKN-----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG 291 (479) Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~ 291 (479) ............+....+++++.||||+|.| +.+|+|+++++++++|++|.++|+.+.++.+.+.|+.+++|+.. T Consensus 228 ~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~tg~~~ 307 (527) T protein:vir:10 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) T ss_pred chhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeeeccccc Confidence 0000011122344678899999999999976 34799999999999999999999999999999999999999864 Q ss_pred cchhhHH--HHhhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccc---cccccHHHHHHHHHH Q lcl|Aclame:pro 292 TSLQEFI--DNIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQN---TGDKSGVALKFLYSL 366 (479) Q Consensus 292 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~---~g~~Sg~Ai~~~~~~ 366 (479) .+..+.. ..+..+.++.+++++++..+......+.++.|++.|.+.|+.+|.+|...++. .++.||.|+++.+++ T Consensus 308 vd~~G~~~~~~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~SG~ALeL~L~P 387 (527) T protein:vir:10 308 RDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSA 387 (527) T ss_pred ccccCCcCccccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcHHHHHHHHHHH Confidence 4332222 23556788889999999888877788899999999999999999999998883 346799999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCC---Cc-cccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHH Q lcl|Aclame:pro 367 LDLKCSKTEKKFKKAIRELLW-FVCEYLKISGN---KS-YDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVS 439 (479) Q Consensus 367 l~~k~~~~~~~~~~~l~~~~~-li~~~~~~~~~---~~-~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~ 439 (479) |.+++.+++..++-..++..+ .+..++....+ .+ .....+.++|.+++|.|.++.++.+.++ +|++|.+||++ T Consensus 388 Llar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~aGi~S~~tAv~ 467 (527) T protein:vir:10 388 ILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNSEKRFNQLLQLWEAGLIPAKKLTE 467 (527) T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHHcCchhHHHHHH Confidence 999999999998888876543 44443333222 22 2234779999999999999999999886 78999999988 Q ss_pred hC---CCCCCHHHHHHHHHHHHHHHHhhhh----ccCCC---CCCC-cCCC Q lcl|Aclame:pro 440 NH---PWVEDVNDELERLKKQEDTQKEYDD----LIPNN---QDGV-IDET 479 (479) Q Consensus 440 ~l---~~~~d~~~El~~i~~E~~~~~~~~~----~~~~~---~~~~-~det 479 (479) +| ++++|+++|+++|.++++.++.... ..... +.|- .+|+ T Consensus 468 ~L~~~~g~eD~E~E~~~I~~era~~a~a~a~A~~~~~a~~~~~~g~~~~~~ 518 (527) T protein:vir:10 468 ELSKIMGFELTEEDFKQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEED 518 (527) T ss_pred HHHhccCCCChHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCc Confidence 76 7789999999999999876543322 22211 1122 2222 No 72 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=100.00 E-value=1.8e-45 Score=265.88 Aligned_cols=466 Identities=13% Similarity=0.125 Sum_probs=309.8 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |. |.--.=....++. ....++...|.. ..+.|+.+|+.|.+||.|++..+..... .+. . +-..++.+| T Consensus 1 ~~--~~~~~~~~~~~~~-~g~~~~p~~v~~-~d~~Rl~aY~l~~~~y~n~~~~~~~~lr----g~~-~---~~~r~~~~p 68 (527) T protein:vir:10 1 MG--QDKRQYGSTQQLR-AGEANFPNAVTD-FDKARLASYRLYEDMYLTNTSDYQVILR----GGD-E---GDQRPIYVP 68 (527) T ss_pred CC--ccccccCCCcCcC-CccccCcccCCH-HHHHHHHHHHHHHHHhcCchhheeeecC----Ccc-c---cccceeeeh Confidence 21 1110111122332 223334444543 5677889999999999998754432111 011 0 111235566 Q ss_pred hHHHHHHHHHhhhhccCeee--cCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCC----CceEEEEE Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGNPIVF--NADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRK----GEFKYVII 153 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~~~~~--~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~----~~~~i~~~ 153 (479) -.+.|+...-.+ .+.|..+ +..++.++..++.|. .|++..++.+..+++.+.|.+.+++-+|+. ++++++.+ T Consensus 69 s~~~~~~~~~~~-~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~~v~~~ 147 (527) T protein:vir:10 69 NGEKLIEAKMRF-LGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) T ss_pred hhHHhhCCccee-eccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCceEeec Confidence 666666655433 3344432 334567888888874 589999999999999999998888777742 47999999 Q ss_pred ccceeEEEEcCCCCCceEEE--EEEEeeecccCceEEEEEE----EeC--------CcEEEEEE---cCCcccccccccc Q lcl|Aclame:pro 154 PAEEAIPIWDSKRQRELVAF--IRFYYIEDIDGNKIKRVEY----YTE--------NDITYFIE---RGNSFIQEFLYDE 216 (479) Q Consensus 154 ~p~~~~~~~d~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~----y~~--------~~i~~~~~---~~~~~~~~~~~~~ 216 (479) ||.+.|++.|+...+.+..+ +.-|...+.....+..+.+ |.- .+-..|.. .-+.|....+... T Consensus 148 DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~~e~p~ 227 (527) T protein:vir:10 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPL 227 (527) T ss_pred CcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeecccccccccccc Confidence 99999999888766666554 3335555444433221110 110 11111110 0011100000000 Q ss_pred ccccccccccccccccccccccccceEEecC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc Q lcl|Aclame:pro 217 YGKMTDIQEGHFRINNKEQGWGKVPFIPFKN-----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG 291 (479) Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~ 291 (479) ............+....+++++.||||+|.| +.+|+|+++++++++|++|.++|+.+.++.+.+.|+.+++|+.. T Consensus 228 ~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~tg~~~ 307 (527) T protein:vir:10 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) T ss_pred chhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeeeccccc Confidence 0000011122344678899999999999976 34799999999999999999999999999999999999999864 Q ss_pred cchhhHH--HHhhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccc---cccccHHHHHHHHHH Q lcl|Aclame:pro 292 TSLQEFI--DNIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQN---TGDKSGVALKFLYSL 366 (479) Q Consensus 292 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~---~g~~Sg~Ai~~~~~~ 366 (479) .+..+.. ..+..+.++.+++++++..+......+.++.|++.|.+.|+.+|.+|...++. .++.||.|+++.+++ T Consensus 308 vd~~G~~~~~~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~SG~ALeL~L~P 387 (527) T protein:vir:10 308 RDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSA 387 (527) T ss_pred ccccCCcCccccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcHHHHHHHHHHH Confidence 4332222 23556788889999999888877788899999999999999999999998883 346799999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCC---Cc-cccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHH Q lcl|Aclame:pro 367 LDLKCSKTEKKFKKAIRELLW-FVCEYLKISGN---KS-YDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVS 439 (479) Q Consensus 367 l~~k~~~~~~~~~~~l~~~~~-li~~~~~~~~~---~~-~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~ 439 (479) |.+++.+++..++-..++..+ .+..++....+ .+ .....+.++|.+++|.|.++.++.+.++ +|++|.+||++ T Consensus 388 Llar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~aGiiS~etAv~ 467 (527) T protein:vir:10 388 ILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTE 467 (527) T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHHcCchhHHHHHH Confidence 999999999998888876543 44443333222 22 2234779999999999999999999886 78999999988 Q ss_pred hC---CCCCCHHHHHHHHHHHHHHHHhhhh----ccCCC---CCCC-cCCC Q lcl|Aclame:pro 440 NH---PWVEDVNDELERLKKQEDTQKEYDD----LIPNN---QDGV-IDET 479 (479) Q Consensus 440 ~l---~~~~d~~~El~~i~~E~~~~~~~~~----~~~~~---~~~~-~det 479 (479) +| ++++|+++|+++|.++++.++.... ..... +.|- .+|+ T Consensus 468 ~L~~~~g~eD~E~E~~~I~~era~~a~a~a~a~~~~~a~~~~~~g~~~~~~ 518 (527) T protein:vir:10 468 ELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEED 518 (527) T ss_pred HHHhccCCCchHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCc Confidence 76 7789999999999999876543332 22211 1122 2222 No 73 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=100.00 E-value=1.4e-39 Score=233.51 Aligned_cols=456 Identities=10% Similarity=0.065 Sum_probs=288.9 Q ss_pred CcHHHH----HHH-HhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecch Q lcl|Aclame:pro 7 SETDLI----KVQ-LKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNY 81 (479) Q Consensus 7 ~~~~~~----~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~ 81 (479) |.-+.= ... +.+..+.| |. ...+.|..+|+.|.+||.|++..+...+.. . + ..-+..|. T Consensus 1 m~~~~~q~~p~~~~fp~~~a~w----V~-~~D~~RlaaY~ly~d~y~n~~~el~~il~G----~-----d--r~~~~~ps 64 (563) T protein:vir:74 1 MPYNHKQYDPAKPFLRGGDDNI----VD-ENDKNRVRAYDLYENIYLNSAETLKLVLRG----D-----D--SVPILMPS 64 (563) T ss_pred CCccccccCCCccccccccccc----CC-HHHHHHHHHHHHHHHhhcCchhhhhhhcCC----C-----c--eeeeccch Confidence 221111 112 22333333 32 244558899999999999998554311100 0 0 01134567 Q ss_pred HHHHHHHHHhhhhccCeeecCCc--------hhHHHHHHHH-HhcCHHHHHHHHHHHHHhCCeEEEEEEeCCC----Cce Q lcl|Aclame:pro 82 HKLLVDQKVGYSVGNPIVFNADD--------DNLTKLLNDL-LGEEFDDTITELYLNASNKGVEWLHPYINRK----GEF 148 (479) Q Consensus 82 ~~~iv~~~a~~l~g~~~~~~~~~--------~~~~~~~~~~-~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~----~~~ 148 (479) ++++|++.+.| +|+|++++.+. +.++.+++.| ..+++..++.+..+++.+.|.+.+++-+|++ +++ T Consensus 65 ~r~~V~~~~~~-Lg~~~~~~Ve~~~~de~~~~avq~~Lr~~~~~e~l~~~~~~~~r~a~vlGDgvf~l~wDp~K~~g~R~ 143 (563) T protein:vir:74 65 GRKIVEAVHRF-LGVGFDYLVEPDMGDEGIRQSLNAYFRTTFKREAIKAKFTSNKRWGLIRGDAHFYIHADPNKKAGERI 143 (563) T ss_pred HHHHHHHHHHh-cCCCcEEecCccccCcchHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccccccCCCc Confidence 88999996655 59999986432 2344566666 4588999999999999999998888777742 589 Q ss_pred EEEEEccceeEEEEcCCCCCce--EEEEEEEeeecccCceEEEEEE--Ee--CCcE--EEEEEcCCcccc---ccccc-- Q lcl|Aclame:pro 149 KYVIIPAEEAIPIWDSKRQREL--VAFIRFYYIEDIDGNKIKRVEY--YT--ENDI--TYFIERGNSFIQ---EFLYD-- 215 (479) Q Consensus 149 ~i~~~~p~~~~~~~d~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~--y~--~~~i--~~~~~~~~~~~~---~~~~~-- 215 (479) ++..+||.+.||+-|++..... +.+..-|...+...+....+.- |. +... ..+......|.. ..... T Consensus 144 rv~~vDP~~~fp~~dpd~v~g~~~v~v~~~~~~pdd~~~~~~r~~~~~~~lndeg~~~~~~~~dae~w~lg~wd~r~~~~ 223 (563) T protein:vir:74 144 SVDEVDPRQIFLIEDGSTVVGFHMVDIVQDFRSPDDPSKKLARRRTFRRVRNDEGMFTGRISSELTHWTLGNWDDRGAIS 223 (563) T ss_pred eEeecCCceeeeccCCCCcccceeeecccCCCCCcchhccceeeeeeeeeeCCCCCccceeeeccchhccccccccCccc Confidence 9999999999996555433221 2222244444333332322221 11 1111 111111111110 00000 Q ss_pred ----cccccccccccccccccccccccccceEEecC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeee Q lcl|Aclame:pro 216 ----EYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN-----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL 286 (479) Q Consensus 216 ----~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~ 286 (479) .............++...|++++.||+|+|.| +.+|+|++++++++++++|..+|+.+.++.++..|+.++ T Consensus 224 ~~~~~~~~~~~~~~~d~e~~~LP~pi~~iPiv~~~tip~~~s~WG~S~La~ll~~~~eLn~~~Td~s~i~~~tG~pi~vl 303 (563) T protein:vir:74 224 DEQARRKEQVRSAQHDEEEEELPEPISQLPLYRWRNKPPQNSSWGTSQLEGMETLAYALNQSLTDEDATIVFQGLGMYVT 303 (563) T ss_pred hhhhcccchhhhhhhhchhhhccccccCccEEEcCCCCCcccccchhhHHHHHHHHHHHhhhhhHHHHHHHhcCCCeEEe Confidence 00000011112224566799999999999866 347999999999999999999999999999999999999 Q ss_pred ecCCccchh---hHHHHhhcccceecCCCCc---ceeeecCCCHHHHHHHHHHHHH-HHHHHhCCCCCccc--ccc-ccc Q lcl|Aclame:pro 287 KEYPGTSLQ---EFIDNIRYYKSIKVDGGGG---VDKLEINIPVEAKKELLDRLEK-NIIIFGQGVNPESQ--NTG-DKS 356 (479) Q Consensus 287 ~g~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~-~i~~~s~~~~~~~~--~~g-~~S 356 (479) .+....+.. -...++..+.++.++++.. ...+..-.+.+.++.|++.+.. .|+.+|.+|...++ +.+ ..| T Consensus 304 ~~~~p~d~~~g~~~~w~vgpG~i~El~~~~~~g~l~~v~g~~~l~~~q~Hm~~l~eral~~~s~tPavA~G~vD~~~~~S 383 (563) T protein:vir:74 304 NASAPVDPNTGELTDWNIGPMQIVEIAGNRNDNYFERVSGVQDVSPFQDHMKWIDEKGIAEGSGTPEVAIGRVDVTSAES 383 (563) T ss_pred ccccccccccccccccccCCceeEeccCCccccceeeecchhhhHHHHHHHHHHHHHHHHhhccCcceeecccccccccc Confidence 875432211 1123356788888887654 4444444566889999998766 88999999998888 444 479 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh----------cCCCccccc-eeeEEeCCCCCCCHHHH Q lcl|Aclame:pro 357 GVALKFLYSLLDLKCSKTEKKFKKAIRE----LLWFVCEYLKI----------SGNKSYDYK-TVQITFNHSMIINEAEK 421 (479) Q Consensus 357 g~Ai~~~~~~l~~k~~~~~~~~~~~l~~----~~~li~~~~~~----------~~~~~~~~~-~i~i~f~~~~p~d~~e~ 421 (479) |.||+..+.+|.+++.+|+..+..++++ .+++++.+... .+..+.... .++|+|.+.+|.|..+. T Consensus 384 GiALeL~L~PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~~~~~~~~v~ivf~p~~P~d~~~v 463 (563) T protein:vir:74 384 GISLELQLKPLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASADLLNECSVVCIFADPMPVNKTQV 463 (563) T ss_pred hhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccccccccccCCceEEEEEeCCCCCccHHHH Confidence 9999999999999999999877777766 44444433222 222333333 47899999999999999 Q ss_pred HHHHHHH--hccCChHHHHHhC---CCCC-CHHHHHHHHHHHHH-----HHHhhhhccCC---CCCCCcCCC Q lcl|Aclame:pro 422 IDMAAKS--TGIVSDETIVSNH---PWVE-DVNDELERLKKQED-----TQKEYDDLIPN---NQDGVIDET 479 (479) Q Consensus 422 a~~~~k~--~g~is~et~~~~l---~~~~-d~~~El~~i~~E~~-----~~~~~~~~~~~---~~~~~~det 479 (479) ++.+..+ +|++|.+||+.+| |+.. |++.|+++|+.++- ++++.++.... .+.|-+|+. T Consensus 464 v~~~~tl~~aGiiSretAv~~L~~~g~~~pdae~e~~~ie~~~i~~~~~a~a~ad~~~~~~a~~~~g~~~~~ 535 (563) T protein:vir:74 464 TQDTLLLQQAHLILRKMAVAKLRSIGWEYPEVDDQGNALTDDDIADMLLAEAEADASLGLSAMDNGGAGEQQ 535 (563) T ss_pred HHHHHHHHHcCchhHHHHHHHHHhCCCCCCcHHHHHhhcCHHHHHHHHHHHhhccCcccceecccCCCCccc Confidence 9988765 7899999998877 6543 67777777766542 22333333221 222222222 No 74 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=100.00 E-value=1.5e-30 Score=184.15 Aligned_cols=425 Identities=11% Similarity=0.074 Sum_probs=272.3 Q ss_pred CCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccc----cCccee Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFT----KVNNKA 77 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~----~~~~ri 77 (479) || .... |.--.....+++++++.|.|...+......++.... .+... +...-+ T Consensus 1 m~------------V~~~----------hp~y~a~~~~W~~~rd~~~G~~~~r~~g~~YLpk~~-~E~~~~Y~~rl~rA~ 57 (452) T protein:vir:94 1 MP------------IETK----------HPEYLAYENDWIDCRVASLGQREVKKKGVRFLPKLS-GQTDDMYNAYKQRAL 57 (452) T ss_pred CC------------CCCc----------CHHHHHHHHHHHHHHHHhcChHHHHcCCcccCCCCC-CCCHHHHHHHHhhcc Confidence 11 1111 111122345678888888876544322111221111 11101 111123 Q ss_pred ecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCC-ceEEEEEccc Q lcl|Aclame:pro 78 INNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKG-EFKYVIIPAE 156 (479) Q Consensus 78 ~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~-~~~i~~~~p~ 156 (479) -.|+++.+++..++++|.+||+++.++. ...+..+-.+++++.++..+.+.++.+|+++++|.++..| +|.+..++|. T Consensus 58 ~~n~~~~t~~~~~G~vf~k~p~~~~p~~-l~~~~~D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy~~~~~~~ 136 (452) T protein:vir:94 58 FYSITSKTLSALSGMVLDQPPVITHPDA-MSKYFEDQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPYISVYTTE 136 (452) T ss_pred CCchHHHHHHHHhchhhcCCceecccHH-HHHHHhcccCCCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceEEEEechh Confidence 4799999999999999999999876533 3333334557899999999999999999999999998775 7999999999 Q ss_pred eeEEEEcCCCCCceEEEEEEEeee--ccc-C---ceEEEEEEEe--CCcEEEEEEc--CCcccccccccccccccccccc Q lcl|Aclame:pro 157 EAIPIWDSKRQRELVAFIRFYYIE--DID-G---NKIKRVEYYT--ENDITYFIER--GNSFIQEFLYDEYGKMTDIQEG 226 (479) Q Consensus 157 ~~~~~~d~~~~~~~~~~i~~~~~~--~~~-~---~~~~~~~~y~--~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 226 (479) +++- |+......+...+...... +.+ + +....+.+++ ++.+..++.. .++... ... T Consensus 137 ~Ii~-W~~~~~g~l~~v~lre~~~~~d~~d~f~~~~~~~yRvL~l~~g~~~v~~~~~~~~~~~~-------------~~~ 202 (452) T protein:vir:94 137 NILN-WEEDEDGRLLMVVLREFYTVRDTADRYVQNIRVRYRCLELVDGLLQITVHETQDGKVWE-------------LAK 202 (452) T ss_pred hhcC-ccccccCCeeEEEEEEEEEEecCCCcccceeEEEEEEEEEeCCeEEEEEEEccCCceee-------------ecc Confidence 9875 5533334444333222221 221 1 2233333433 4433332222 211100 011 Q ss_pred ccccccccccccccceEEecCCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhh Q lcl|Aclame:pro 227 HFRINNKEQGWGKVPFIPFKNNE----KCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIR 302 (479) Q Consensus 227 ~~~~~~~~~~~g~vPvv~~~n~~----~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~ 302 (479) +...+...|+++.||||.+.... .+.+.|.++..+--.+.+..|++.+.+...++|++++.|..... ...+. T Consensus 203 ~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~pPLl~LA~ln~~hy~~~sd~~~~l~~~~~P~l~~~g~~~~~----~i~iG 278 (452) T protein:vir:94 203 TSTIQNVGVTMDYIPFFCITPSGLSMTPAKPPMIDIVDINYSHYRTSADLEHGRHFTGLPTPWITGAESQS----TMHIG 278 (452) T ss_pred ceeecCCCcccceeEEEEEcCCCCCCCCCccchHHHHHHHHHHhcchhHHHHHHHHcccceeEeecCcCCC----ceEec Confidence 23446678999999999886543 35677899999999999999999999999999999999865321 12345 Q ss_pred cccceecCC-CCcceeeecCCCH-HHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 303 YYKSIKVDG-GGGVDKLEINIPV-EAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKK 380 (479) Q Consensus 303 ~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~ 380 (479) .+.++.+++ +++++|++.+.+. +..++.++.+++.+...+.-. +.....++.|++|.........+........++. T Consensus 279 ~~~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~~m~~~Ga~l-l~~~~~~~~s~ea~~~~~~~~~s~L~~~a~~~e~ 357 (452) T protein:vir:94 279 STKAWVIPEVAAKVGFLEFTGQGLQSLEKALSEKQAQLASLSARL-IDNSTRGSEATETVKLRYMSETASLKSVTRAVEA 357 (452) T ss_pred ccccccCCCCCCcceEEccCchhHHHHHHHHHHHHHHHHHHHHHh-hccCCCcchHHHHHHHHHHHhhHHHHHHHHHHHH Confidence 566778886 8889999988654 778999999999998876532 2233456678988888777778888888899999 Q ss_pred HHHHHHHHHHHHHHhcCCCccccceeeEEeCC--CCCCCHHHHHHHHHHH--hccCChHHHHHhC--CCCCCHHHHHHHH Q lcl|Aclame:pro 381 AIRELLWFVCEYLKISGNKSYDYKTVQITFNH--SMIINEAEKIDMAAKS--TGIVSDETIVSNH--PWVEDVNDELERL 454 (479) Q Consensus 381 ~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~--~~p~d~~e~a~~~~k~--~g~is~et~~~~l--~~~~d~~~El~~i 454 (479) ++.+++++++.+++... ++.|..+. ..+.-..+.++++.++ +|.+|++|++..| .++-|+++|.+++ T Consensus 358 al~~~l~~~a~w~g~~~-------~~~v~~n~dF~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~gvl~~~~e~~~i 430 (452) T protein:vir:94 358 LLNKAYSCIMDMESMGG-------TLNIKLNSAFLDSKLTAAELKAWVEAYLSGGISKEIYIHALKVGKVLPPPGESMGV 430 (452) T ss_pred HHHHHHHHHHHHcCCCC-------ceEEEeccccccccCCHHHHHHHHHHHhcCCCcHHHHHHHHHhCCCCCCccCHHHH Confidence 99999999999877421 22333221 2222234456665554 7899999998766 3355777888888 Q ss_pred HHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 455 KKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 455 ~~E~~~~~~~~~~~~~~~~~~~det 479 (479) ..|..+....... .....+++. T Consensus 431 ~~E~~~~~~~~~~---~~~~~~~~~ 452 (452) T protein:vir:94 431 IPDPPAPEPSPSN---TPPNPSSKA 452 (452) T ss_pred HHHhhccCcccCC---CCCCCccCC Confidence 8886654322222 222233333 No 75 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=99.96 E-value=8.5e-29 Score=174.47 Aligned_cols=437 Identities=14% Similarity=0.094 Sum_probs=274.9 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccccccccccccccc----ccCcce Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDF----TKVNNK 76 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~----~~~~~r 76 (479) |.++=++.-.. . |.--.....+++++++.|.|...+...-..++.... .+.. .+...- T Consensus 1 m~~~~~~~v~~-------~----------h~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~~-~E~~~~Y~~rl~rA 62 (513) T protein:vir:97 1 MADKDPKSPAT-------T----------SGAYDQMLPRWHVIETLLGGTEAMREAGETYLPRHQ-EETDKGYQERLASA 62 (513) T ss_pred CCCCCCCCCCc-------C----------CHHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCCC-CCCHHHHHHHHhcc Confidence 44432221100 0 111122345678888888876433211111111111 0110 011112 Q ss_pred eecchHHHHHHHHHhhhhccCeeecCCc-hhHHH-HHHHH--HhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCC------ Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVFNADD-DNLTK-LLNDL--LGEEFDDTITELYLNASNKGVEWLHPYINRKG------ 146 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~~~~~-~~~~~-~~~~~--~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~------ 146 (479) +-.|+++.+++..++++|.+||+++.+. +.... +++.. .+++++.+++.+++.++.+|+++++|..+..+ T Consensus 63 ~~~n~~~~tl~~l~G~vf~k~p~~~~~~p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~ 142 (513) T protein:vir:97 63 VLLNMVEQTLDTLSGKPFSEPIKLNEDVPKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQ 142 (513) T ss_pred cCCChHHHHHHHHhhhhhhcCcccCcCchHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchh Confidence 4579999999999999999999987543 23332 44443 45789999999999999999999999876532 Q ss_pred ------------ceEEEEEccceeEEEEcC--CCC-CceEEEEEEEeeeccc---CceEEEEEEEeCCcEEEEEEcCCcc Q lcl|Aclame:pro 147 ------------EFKYVIIPAEEAIPIWDS--KRQ-RELVAFIRFYYIEDID---GNKIKRVEYYTENDITYFIERGNSF 208 (479) Q Consensus 147 ------------~~~i~~~~p~~~~~~~d~--~~~-~~~~~~i~~~~~~~~~---~~~~~~~~~y~~~~i~~~~~~~~~~ 208 (479) +|.+..++|.+++- |+. .+. ..+..++..-...+.+ .+.+..+.+++++.+..|+...++. T Consensus 143 ~~T~Ade~~~~~rPy~~~~~~e~Iin-W~~~~v~G~~~L~~v~l~E~~~~~Dgf~~~~~~q~rvL~~g~~~v~r~~~~~~ 221 (513) T protein:vir:97 143 PRTLADDRREGLRPYWVMIKPECLLF-ARSEVINGVEVLQHVRIIEHYMEQDGFAEVCKRRIRVLEPGLVQLWEPVKKSN 221 (513) T ss_pred HHhHHHHHhhccCceEEEecHhhhcC-cceeccCcceeeeeEEEEEEEeecCCCcceEEEEEEEEeCceEEEEEeecCCC Confidence 38899999999875 332 122 2344333222222223 2345556678887776665543321 Q ss_pred ccccccccccccccccccccccccccccccccceEEecCCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccee Q lcl|Aclame:pro 209 IQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE----KCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIY 284 (479) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~----~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l 284 (479) . ....+..+....|+++.||||++.... .+.+-|.++..+-.++-+..|++.+++...++|++ T Consensus 222 ~-------------~~~e~~~~~~g~~~l~~IP~v~~~~~~~~~~~~~pPLl~LA~ln~~hy~~~Sd~~~il~~~~~P~l 288 (513) T protein:vir:97 222 A-------------QKEEWALADEWATGLNYVPLVTFYADRQGFMMGKPPLLDLAHLNVAHWQSASDQRHILTVSRFPIL 288 (513) T ss_pred c-------------cccceEEecCCCCcCCceeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhhHHHHHHhccccee Confidence 1 112355667788999999999997543 25567889999999999999999999999999999 Q ss_pred eeecCCccchhhHHHHhhcccceecCC-CCcceeeecCCCH-HHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHH Q lcl|Aclame:pro 285 VLKEYPGTSLQEFIDNIRYYKSIKVDG-GGGVDKLEINIPV-EAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKF 362 (479) Q Consensus 285 ~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~ 362 (479) ++.|......++ ..+..+.++.+++ +++++|++.+.+. +..+..++.++++|..++..+ -....++.||++.+. T Consensus 289 ~~~G~~~~~~~~--i~iG~~~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~qm~~~Ga~l--l~~~~~~~Ta~a~~~ 364 (513) T protein:vir:97 289 ACSGASGEDSDP--VVVGPNKVLYNPDPAGRFYYVEHTGQAIAAGRTDLKDLEEQMAGYGAEF--LKRKTGGQTATARAL 364 (513) T ss_pred eeecCCcCCCCc--eEeeccccccCCCCCCcceeeccCchhHHHHHHHHHHHHHHHHHHHHHh--hccCCccccHHHHHH Confidence 999875543322 2344556677775 7889999998654 668899999999998877543 223456799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeC-CCCCCC-HHHHHHHHHHH--hccCChHHHH Q lcl|Aclame:pro 363 LYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFN-HSMIIN-EAEKIDMAAKS--TGIVSDETIV 438 (479) Q Consensus 363 ~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~-~~~p~d-~~e~a~~~~k~--~g~is~et~~ 438 (479) ..+...+.+......++.++.+++++++.+++... + .++|..+ +....+ ..+.++++.++ +|.+|++|.+ T Consensus 365 ~~~~~~S~L~~~a~~le~al~~~l~~~a~wlg~~~----~--~~~v~in~dF~~~~~~~~~~~al~~a~~~G~is~~t~~ 438 (513) T protein:vir:97 365 DSAEATSDLSAMTGLFEDALAQALDITADWLRLGP----N--GGTVELVKDYDLEEMDAPGLQALQVAREKRDISRKTYL 438 (513) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----C--ccEEEeccccCcccCCHHHHHHHHHHHhCCCCCHHHHH Confidence 99999999999999999999999999999987532 1 1223322 222222 23455665554 7899999987 Q ss_pred HhC---CCCC---CHHHHHHHHHHHHHHHH-hh------hhccCCCCCC--CcCCC Q lcl|Aclame:pro 439 SNH---PWVE---DVNDELERLKKQEDTQK-EY------DDLIPNNQDG--VIDET 479 (479) Q Consensus 439 ~~l---~~~~---d~~~El~~i~~E~~~~~-~~------~~~~~~~~~~--~~det 479 (479) +.| +.+. |.+++.+.+.++-++.. .. ....++...+ ..+++ T Consensus 439 ~~L~r~gvl~~d~d~~~~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 494 (513) T protein:vir:97 439 NGLRLRGVLPEDFDEDEDWEELMEEISEAMGRAGLDLDPAQKNPPEGGEGEGEGEG 494 (513) T ss_pred HHHHhccCCCccCCHHHHHHHHHHhhhhccCCCCccccccCCCCCCCCCCCCCCCC Confidence 654 3332 34555555555432221 10 1111111111 11111 No 76 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=99.95 E-value=9.3e-27 Score=163.29 Aligned_cols=443 Identities=12% Similarity=0.043 Sum_probs=263.9 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccc------ccc--cccc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGA------KVD--DFTK 72 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~------~~~--~~~~ 72 (479) |-|+ ... |.--.....+++.+++.+.|...+..+...++.... ..+ -..+ T Consensus 1 m~~V------------~~~----------hp~y~~~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~e~~~~e~~~~Y~~r 58 (501) T protein:vir:95 1 MPNV------------SFI----------RPELGKLLPLYYLIRDAIAGEPTVKGARTTYLPMPNAEDQSKENKARYEAY 58 (501) T ss_pred CCCC------------CCC----------CHHHHHHHHHHHHHHHHhcChHHHHhcccccCcCCCCCCCcccchHHHHHH Confidence 2221 011 111122345677788888887544222111221100 000 0011 Q ss_pred CcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHH--HhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCC---- Q lcl|Aclame:pro 73 VNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDL--LGEEFDDTITELYLNASNKGVEWLHPYINRKG---- 146 (479) Q Consensus 73 ~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~--~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~---- 146 (479) ...-+-.|+++.+++..++++|.++|+++.+ +....+++.. .+++++.+++.+++.++.+|+++++|..+..+ T Consensus 59 l~rA~~~n~~~~t~~~l~G~vf~k~p~~~~p-~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~ 137 (501) T protein:vir:95 59 LKRAVFYNVARRTLFGLVGQVFMRDPVVKVP-ALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGG 137 (501) T ss_pred hhccccCchHHHHHHHHhhhhhcCCcceeCc-HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCccc Confidence 1112457999999999999999999998633 4455566554 45789999999999999999999999876532 Q ss_pred -----------ceEEEEEccceeEEEEcCC--C-CCceEEEEEEEeeecccC----ceEEEEEEEeCC--cE---EEEEE Q lcl|Aclame:pro 147 -----------EFKYVIIPAEEAIPIWDSK--R-QRELVAFIRFYYIEDIDG----NKIKRVEYYTEN--DI---TYFIE 203 (479) Q Consensus 147 -----------~~~i~~~~p~~~~~~~d~~--~-~~~~~~~i~~~~~~~~~~----~~~~~~~~y~~~--~i---~~~~~ 203 (479) +|.+..++|.+++- |+.. . ...+..++........++ +.+..+.+.+.+ +. ..|+. T Consensus 138 ~t~a~~~~~~~rPy~~~~~~~~Iin-W~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~~~g~~~~~v~r~ 216 (501) T protein:vir:95 138 ASIADLEAGRIRPTLYVYSPTEIIN-WRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLDEEGYYVHEIWRE 216 (501) T ss_pred ccHHHHHhccCCcEEEEecHhhhcC-cceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeCCCceEEEEEEEe Confidence 38899999999865 3322 1 223443332222222222 233334344332 22 22333 Q ss_pred cCCccccccccccccccccccccccccccccccccccceEEecCCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 204 RGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE----KCVSDLTFYKSLIDIYDNNISTLADNLDEI 279 (479) Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~----~g~s~~~~v~~lid~~~~~~s~~~~~~~~~ 279 (479) ...+...... .. .........+...+...|+++.||||.+.... .+.+.|.++..+--..-+..|++.+.+... T Consensus 217 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~lA~lni~hy~~ssd~~~~l~~~ 294 (501) T protein:vir:95 217 PQPTKADGSK-IP-KGNYQQYVVYKPTDAQGKRLTEIPFMFIGSENNDSNPDNPNFYDLASLNMAHYRNSADYEESCYIV 294 (501) T ss_pred cCCcccCcce-ec-CCcccccceeeeeccCCCcCCeeeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhHHHHHHHHc Confidence 3222110000 00 00011122334445667999999999885432 245667888888777778889999999999 Q ss_pred ccceeeeecCCccchhh---HHHHhhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccccc Q lcl|Aclame:pro 280 QEVIYVLKEYPGTSLQE---FIDNIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKS 356 (479) Q Consensus 280 ~~p~l~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~S 356 (479) ++|+++++|.+.+..+. ....+.....+.++.+++++|++.+.+.- .+..++.+++.|...+... .....++.| T Consensus 295 ~~P~l~i~G~~~~~~~~~~~~~i~~G~~~~~~lP~~~~~~~ie~~~~~i-~~~~l~~l~~~m~~~Ga~l--l~~~~~~~T 371 (501) T protein:vir:95 295 GQPTPVLIGLTEEWVTNVLKGSVNFGSRGGIPLPVGADAKLLQASENTM-LKEAMDTKERQMVALGAKL--VEQKEVQRT 371 (501) T ss_pred ccceeeeeCCcccccccCCCCceeecccccccCCCCCceeEEecChhhH-HHHHHHHHHHHHHHHHHhh--ccCCccchh Confidence 99999999876532221 11223445567788999999999865433 3677888888888876432 234557789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeC-CCCCCC-HHHHHHHHHHH--hccC Q lcl|Aclame:pro 357 GVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFN-HSMIIN-EAEKIDMAAKS--TGIV 432 (479) Q Consensus 357 g~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~-~~~p~d-~~e~a~~~~k~--~g~i 432 (479) |+|.+.......+........++.++.+++++++.+++.... .++|..+ +..+.. ..+.++++.++ +|.+ T Consensus 372 a~~~~~~~~~~~S~L~~~a~~le~al~~~l~~~a~w~g~~~~------~~~v~i~~df~~~~~~~~~~~al~~~~~~G~i 445 (501) T protein:vir:95 372 ATEAELEAASEGSTLSSATKNVSAAFEWALKWAARWVGQADS------GVKFELNTDFDIARMTPDERRSLVEEWQKGAI 445 (501) T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC------ceEEEEecccccccCCHHHHHHHHHHHhCCCC Confidence 999999999999999999999999999999999999775321 1233322 222222 34456666554 7899 Q ss_pred ChHHHHHh---CCCCC-CHHHHHHHHHHHHHHHHhh---hhccCCCCCCCcCCC Q lcl|Aclame:pro 433 SDETIVSN---HPWVE-DVNDELERLKKQEDTQKEY---DDLIPNNQDGVIDET 479 (479) Q Consensus 433 s~et~~~~---l~~~~-d~~~El~~i~~E~~~~~~~---~~~~~~~~~~~~det 479 (479) |.+|+++. .+.++ +.+.|.++|..|.++.... .......+ |+++=. T Consensus 446 s~~t~~~~L~~~~v~~~~~~~e~e~i~~~~~~~~~~~~~~~~~~~~~-gg~~~~ 498 (501) T protein:vir:95 446 TFEEMRTGLRKAGVATEDDSKAKEKIAKDTAEAMALATPANVPGDGS-GGDNVG 498 (501) T ss_pred cHHHHHHHHHhCCCCChhHHHHHHHHHhhhcCcccccccCCCCCCCc-cccccc Confidence 99999654 45443 4456677776664432111 11111111 111100 No 77 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=99.93 E-value=6e-25 Score=153.36 Aligned_cols=452 Identities=11% Similarity=0.039 Sum_probs=267.0 Q ss_pred CCCcccCcHHHHHHHHh---------------ccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLK---------------KESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGA 65 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~ 65 (479) |..-- +.+..... ..+..++ .. .|.--.....+++.+++.+.|...+..+...++.... T Consensus 1 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~m~dV-~~-~hp~y~a~~~~W~~ird~~~G~~~~r~~g~~YLP~~~ 74 (535) T protein:vir:80 1 MARKR----TTIRRDVQSKVLIPPQAPPTSGLGPSLPNV-GY-QRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPS 74 (535) T ss_pred CCcch----hhhhhhhhhhcccCCCCcCCCCCCCCCCCC-Cc-CCHHHHHHHHHHHHHHHHhcChHHHHhcccccCCCCC Confidence 32211 11211111 0000110 00 1122233456778888888887544332222222110 Q ss_pred c----ccc----cccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHH--HhcCHHHHHHHHHHHHHhCCe Q lcl|Aclame:pro 66 K----VDD----FTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDL--LGEEFDDTITELYLNASNKGV 135 (479) Q Consensus 66 ~----~~~----~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~--~~n~~~~~~~~~~~~~~~~G~ 135 (479) . .+. ..+...-+-.|+++.+++..++++|.++++++.+ +....+++.. .+++++.+++.+++.++.+|+ T Consensus 75 ~~~~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l~G~vfrk~p~~~~p-~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~ 153 (535) T protein:vir:80 75 VDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGR 153 (535) T ss_pred cccCCcCCHHHHHHHHhhccCCChhHHHHHHHhchhhcCCcceecc-HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCe Confidence 0 000 0011112457999999999999999999988543 4455555544 457899999999999999999 Q ss_pred EEEEEEeCCCC-------------ceEEEEEccceeEEEEcCCC---CCceEEEEEEEeeec-cc---CceEEEEEEEeC Q lcl|Aclame:pro 136 EWLHPYINRKG-------------EFKYVIIPAEEAIPIWDSKR---QRELVAFIRFYYIED-ID---GNKIKRVEYYTE 195 (479) Q Consensus 136 ~~~~v~~d~~~-------------~~~i~~~~p~~~~~~~d~~~---~~~~~~~i~~~~~~~-~~---~~~~~~~~~y~~ 195 (479) ++++|..+..+ +|.+..++|.+++- |+... ...+..++....+.. .+ .+.+..+.++.. T Consensus 154 ~~iLVD~P~~~~~~t~ade~~~~~rPy~~~y~ae~Iin-W~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~~q~RvL~~ 232 (535) T protein:vir:80 154 AAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIIN-WRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQL 232 (535) T ss_pred EEEEEeecCCCCcccHHHHHhcCCCcEEEEechhhccC-ccccccCCccceeEEEEEEEEEecCCCcccceeEEEEEEEe Confidence 99999876654 38899999999875 33221 223443332222221 11 233334444444 Q ss_pred C--cE---EEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCC----CCCchHHHHHHHHHHHH Q lcl|Aclame:pro 196 N--DI---TYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE----KCVSDLTFYKSLIDIYD 266 (479) Q Consensus 196 ~--~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~----~g~s~~~~v~~lid~~~ 266 (479) + +. ..|+.++..... .....+...+...|+++.||||.+.... .+.+.|.++..+.-.+- T Consensus 233 ~~~G~y~v~~~~~~~~~~~~-----------~~~~~~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy 301 (535) T protein:vir:80 233 NAEGNYQVERWRRETQEEMY-----------YSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHY 301 (535) T ss_pred cCCceEEEEEEEeecCCccc-----------cccceeecccCCCcccCeeEEEEeecCCCCCCCCccchHHHHHHHHHHh Confidence 2 22 223322221110 0111123345677999999999885432 24566889999988888 Q ss_pred HHHHHHHHHHHHhccceeeeecCCccchhhH----HHHhhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 267 NNISTLADNLDEIQEVIYVLKEYPGTSLQEF----IDNIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFG 342 (479) Q Consensus 267 ~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s 342 (479) +..|++.+.+...++|++++.|......++. ...+....++.++++++++|++...+.-+. +.++.+++.|..++ T Consensus 302 ~~ssd~~~il~~~~~P~l~i~G~~~~~~~~~~~~~~i~iG~~~~~~lP~~~~~~~~e~~~~~~a~-~~l~~~e~qM~~lG 380 (535) T protein:vir:80 302 RNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIAMG 380 (535) T ss_pred hchhHHHHHHHHhcCceeeeecCchhhhhcCCCCcceEecCcccccCCCCCCcceeeeccchhHH-HHHHHHHHHHHHHH Confidence 9999999999999999999999764332221 122344566778999999999887654443 46778888887765 Q ss_pred CCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeC-CCCCCC-HHH Q lcl|Aclame:pro 343 QGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFN-HSMIIN-EAE 420 (479) Q Consensus 343 ~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~-~~~p~d-~~e 420 (479) ...- ....++.++++.+...+...+........++.++.+++++++.+++... +...++|..+ +....+ ..+ T Consensus 381 a~ll--~~~~~~~Ta~~a~~~~~~~~S~L~~~a~~le~al~~aL~~~A~w~G~~~----~~~~~~i~~n~dF~~~~ld~~ 454 (535) T protein:vir:80 381 ANLL--VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIV----NDETVEYNLNTDFPAARLTPN 454 (535) T ss_pred HHhh--ccCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----CCCceEEEeccccccccCCHH Confidence 4331 2335677777777788888888999999999999999999999876421 1123333332 222222 234 Q ss_pred HHHHHHHH--hccCChHHHHHhC---CCCC---CHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 421 KIDMAAKS--TGIVSDETIVSNH---PWVE---DVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 421 ~a~~~~k~--~g~is~et~~~~l---~~~~---d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) .++++.++ +|.||++|++..| +.++ +.++|+.+|+.|-..... .....+.....++.| T Consensus 455 ~~~all~~~~~G~Is~et~~~~L~r~gvl~~~~~~eee~~ri~~E~~~~~~-~~g~~~d~~~~g~~~ 520 (535) T protein:vir:80 455 ERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTA-AAGKVGDAASGGTNK 520 (535) T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhCCCCCcccchHHHHHHHHhhhhhccc-cCCCCCCCCCCCCCc Confidence 55555554 7899999997654 4332 346777888776443221 112122222223322 No 78 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=99.92 E-value=6.6e-25 Score=153.14 Aligned_cols=437 Identities=11% Similarity=0.027 Sum_probs=257.1 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccccccccccc--ccc--cccCcce Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAK--VDD--FTKVNNK 76 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~--~~~--~~~~~~r 76 (479) |++.- -.+.+-..- |.--.....+++.+++.|.|.... .....+.....+ .+. ..+...- T Consensus 1 ~~~~~----------~~~~~V~~~-----hp~y~a~~~~W~~ird~~~G~~~~-~~r~~yl~~~~~~~~e~~Y~~rl~rA 64 (489) T protein:vir:78 1 MLTEN----------GQGSGVKTK-----HREWLHYAPKWQKVRHALAGELVS-YLRNVGLNEPDKAYGEARQAEYEAGG 64 (489) T ss_pred CccCC----------CccCCCCcc-----CHHHHHHHHHHHHHHHHhcCcccc-cccCCCCCCCCCCCChHHHHHHHhcc Confidence 33321 111111111 222233456788899999995321 111111111110 000 0011112 Q ss_pred eecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHH--HhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCC-------- Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDL--LGEEFDDTITELYLNASNKGVEWLHPYINRKG-------- 146 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~--~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~-------- 146 (479) +-.|+++.+++..++++|.+||+++.+ +....+++.. .+++++.+++.+++.++.+|+++++|..+..+ T Consensus 65 ~~~n~~~~tl~~l~G~vfrk~p~~~~p-~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~ade~ 143 (489) T protein:vir:78 65 IVYNFTRRTLSGMVGSVMRKEPEINIP-KELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAAEQN 143 (489) T ss_pred ccCChHHHHHHHHhchhhcCCcceecc-HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHHHHH Confidence 457999999999999999999988644 3355566544 35789999999999999999999999987665 Q ss_pred ----ceEEEEEccceeEEEE-cCCC-CCceEEEEEEEee--ec----ccCceEEEEEEEeCCc-----EEEEEEcCCccc Q lcl|Aclame:pro 147 ----EFKYVIIPAEEAIPIW-DSKR-QRELVAFIRFYYI--ED----IDGNKIKRVEYYTEND-----ITYFIERGNSFI 209 (479) Q Consensus 147 ----~~~i~~~~p~~~~~~~-d~~~-~~~~~~~i~~~~~--~~----~~~~~~~~~~~y~~~~-----i~~~~~~~~~~~ 209 (479) +|.+..++|.+++-.- +..+ ...+..++..... .+ ...+.+..+.+++.+. +..|+....+.. T Consensus 144 ~~~~rPy~~~~~~~~IinW~~~~v~G~~~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~~~~g~~~~~~~r~~~~g~~ 223 (489) T protein:vir:78 144 AGLLNPTIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYNEPGNEFETKYGEQYRVLDIDSDGNYRQRLFRFDAEGGA 223 (489) T ss_pred HhcCCcEEEEechhhhcCceeeeeCCccceeEEEEEEeEEeecCCCCccceeEEEEEEEecCCCcceEEEEEEeecCCcc Confidence 5889999999986531 1111 2234433322221 11 1123455566666542 222333322211 Q ss_pred cccccccccccccccccccccccccccccccceEEecCCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceee Q lcl|Aclame:pro 210 QEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE----KCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYV 285 (479) Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~----~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~ 285 (479) .. .......+...|+++.||||.+.... .+.+-|.++..+--..-+..|++.+++...++|+++ T Consensus 224 ~~------------~~~~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~ 291 (489) T protein:vir:78 224 QE------------DVVEIYPDLGESLRGVIPFTFIGATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLF 291 (489) T ss_pred cc------------eeeEEeccCCCCccCeeeEEEEecCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceee Confidence 10 00011224567899999999986432 245668888888888889999999999999999999 Q ss_pred eecCCccchhhHH------HHhhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHH Q lcl|Aclame:pro 286 LKEYPGTSLQEFI------DNIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVA 359 (479) Q Consensus 286 ~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~A 359 (479) +.|.......... ..+.....+.++.++.+++++.+.+.. ..+.++.+++.+..++...- ...++.||++ T Consensus 292 i~G~d~~~~~~~~~~~~~~i~~g~~~~~~lp~~~~~~~ie~~~~~~-~r~~l~~le~qm~~lGa~l~---~~~~~~Ta~~ 367 (489) T protein:vir:78 292 IYPGENLTPQAFKEANPNGIKFGSRRGHNLGYGGSAQLIQAGENNL-ARQNMLDKEQQAIQIGAQLI---TPTQQITAQS 367 (489) T ss_pred eecCccCCcccccccCccceeeCCcccccCCCCCCcceeccCcchH-HHHHHHHHHHHHHHHhhhhc---cCCcchhHHH Confidence 9986433221111 112334456678889999999886544 36677777777777643221 2345789999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHH Q lcl|Aclame:pro 360 LKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETI 437 (479) Q Consensus 360 i~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~ 437 (479) .+.......+........++.++.+++++++.+++....... ...+...|... +. ..+.++++.++ +|.+|.+|+ T Consensus 368 ~~~~~~~~~S~L~~~a~~~e~al~~~l~~~a~w~G~~~~~~~-~i~~n~dF~~~-~~-d~~~~~al~~~~~~G~is~~t~ 444 (489) T protein:vir:78 368 ARIQRGADTSVMATIARNVSQAYTDALRWVAVMLGKPEDTEV-EFRLNMDFFLE-PM-TAQDRAAWMADINAGLLPATAY 444 (489) T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCce-EEEeecccCcc-cC-CHHHHHHHHHHHhcCCCCHHHH Confidence 999999999999999999999999999999999775321110 11122233211 11 23346655554 789999998 Q ss_pred HHhC---CCCCC-HHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 438 VSNH---PWVED-VNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 438 ~~~l---~~~~d-~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) +..| +.+++ .+.+.++|.+| . .+.....++...+++ T Consensus 445 ~~~L~~~gv~d~~~e~~~~ei~~~----~--~~~~~~~~g~~~~~~ 484 (489) T protein:vir:78 445 YAALRKAGVTDWTDADIKDAVADQ----P--LPVATEVQGEIPQSA 484 (489) T ss_pred HHHHHhCCCCCccHHHHHHHHhhc----C--CCcccCCcccCCCCc Confidence 7654 33322 12222333321 1 111111111111111 No 79 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=99.92 E-value=1.9e-24 Score=150.69 Aligned_cols=441 Identities=10% Similarity=0.020 Sum_probs=257.7 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccc--cccc--cccCcce Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGA--KVDD--FTKVNNK 76 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~--~~~~--~~~~~~r 76 (479) |+++- -.+.+-..- |.--.....+++.+++.|.|.. .......++.... ..+. ..+...- T Consensus 1 ~~~~~----------~~~~~V~~~-----hp~y~a~~~~W~~ird~~~G~~-~~~~r~~yl~~~~~~~~e~~Y~~rl~rA 64 (491) T protein:vir:95 1 MLTAN----------GQGSGVKTK-----HREWLHYAPKWQKVRHALAGDL-VGYLRNVGLNEPDKAYGEARQAEYEAGG 64 (491) T ss_pred CcccC----------CccCCCCcc-----CHHHHHHHHHHHHHHHHhcCcc-hhhcccCCCcCCCCCCCHHHHHHHHhcc Confidence 33322 111111111 2222334567888999999853 2111111111100 0010 0011112 Q ss_pred eecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHH--HhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCC-------- Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDL--LGEEFDDTITELYLNASNKGVEWLHPYINRKG-------- 146 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~--~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~-------- 146 (479) +-.|+++.+++..++++|.++|+++.+ +....+++.. .+++++.+++.+++.++.+|+++++|..+..+ T Consensus 65 ~~~n~~~~tl~~l~G~vfrk~p~~~~p-~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~Ade~ 143 (491) T protein:vir:95 65 IVYNFTRRTLSGMVGSVMRKEPEINIP-KELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETAAATAAEQN 143 (491) T ss_pred cCCChHHHHHHHHhchhhcCCceeecc-HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCeEEEEEecCCCcccCHHHHH Confidence 457999999999999999999998644 3355566654 35789999999999999999999999887654 Q ss_pred ----ceEEEEEccceeEEEE-cCCC-CCceEEEEEEEee--ecc----cCceEEEEEEEeC---C--cEEEEEEcCCccc Q lcl|Aclame:pro 147 ----EFKYVIIPAEEAIPIW-DSKR-QRELVAFIRFYYI--EDI----DGNKIKRVEYYTE---N--DITYFIERGNSFI 209 (479) Q Consensus 147 ----~~~i~~~~p~~~~~~~-d~~~-~~~~~~~i~~~~~--~~~----~~~~~~~~~~y~~---~--~i~~~~~~~~~~~ 209 (479) +|.+..++|.+++-.- +... ...+..++..... .+. ..+....+.++.. + .+..|+....+.. T Consensus 144 ~~~~rPy~~~~~~~~IinW~~~~v~g~~~L~~v~l~E~~~~~d~~~~f~~~~~~qyRvL~l~~~g~~~~~v~r~~~~g~~ 223 (491) T protein:vir:95 144 AGLLNPTIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYHEPGNEFETKYGEQYRVLDIDTDGNYRQRLFRFDAEGGA 223 (491) T ss_pred HhcCCcEEEEechhhhcCceeeeeCCceeeeEEEEEEeEEeecCCCCcccceEEEEEEEeecCCCceEEEEEEEcCCCcc Confidence 4889999999986531 1111 2234443332221 111 1233444444433 2 1222333222211 Q ss_pred cccccccccccccccccccccccccccccccceEEecCCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceee Q lcl|Aclame:pro 210 QEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE----KCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYV 285 (479) Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~----~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~ 285 (479) . ....+...+...|+++.||||.+.... .+.+-|.++..+--..-+..|++.+.+...++|+++ T Consensus 224 ~------------~~~~~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~ 291 (491) T protein:vir:95 224 Q------------EEVVEIYPDLGESLRGVIPFTFIGATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLF 291 (491) T ss_pred e------------eeeeeeeecCCCcccCeeEEEEEecCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceee Confidence 1 011122234567899999999986432 245668888888888888999999999999999999 Q ss_pred eecCCccchhhHHH------HhhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhC-CCCCcccccccccHH Q lcl|Aclame:pro 286 LKEYPGTSLQEFID------NIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQ-GVNPESQNTGDKSGV 358 (479) Q Consensus 286 ~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~-~~~~~~~~~g~~Sg~ 358 (479) +.|.+....+.... .+.....+.++.++++++++.+.+.- .+..++.++..+...+. .. ...++.||+ T Consensus 292 ~~G~d~~~~~~~~~~~~~~i~~g~~~~~~lP~~~~~~~ie~~~~~~-~~~~l~~~e~qm~~~Ga~l~----~~~~~~Ta~ 366 (491) T protein:vir:95 292 IYPGDNLTPQSFKEANPNGIKFGSRCGHNLGYGGSAQLIQAGENNL-ARQNMLDKEQQAIQIGAQLI----TPSQQITAE 366 (491) T ss_pred eecCcccCcchhhccCcceeEecCcCCcCCCCCCccceeecCcchH-HHHHHHHHHHHHHHHHHHhc----cCCcchhHH Confidence 99865433222111 12223356678889999999875543 36667777777766543 22 123578999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHH Q lcl|Aclame:pro 359 ALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDET 436 (479) Q Consensus 359 Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et 436 (479) +.+.......+........++.++.+++++++.+++....... ...+...|.... . ..+.++++.++ +|.+|.++ T Consensus 367 ~~~~~~~~~~S~L~~~a~~~e~al~~~l~~~a~w~G~~~~~~v-~i~~n~dF~~~~-~-~~~~~~all~~~~~G~is~~t 443 (491) T protein:vir:95 367 SARIQRGADTSVMATIARNVSQAYTDALRWVAMMLGKPEDSEV-EFQLNMDFFLQP-M-TAQDRAAWMADINAGLLPATA 443 (491) T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCce-EEEeeccccccc-C-CHHHHHHHHHHHhcCCCCHHH Confidence 9999999999999999999999999999999999775321110 011222232111 1 23356666554 78999999 Q ss_pred HHHhC---CCCC-CHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 437 IVSNH---PWVE-DVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 437 ~~~~l---~~~~-d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) .+..| +.++ +.++++++|++|.-.- ........+-.+..+.| T Consensus 444 ~~~~L~~~~vl~~~~e~~~~~ie~~~~~~-~~~~~~~~~~~~~~~~~ 489 (491) T protein:vir:95 444 YYAALRKAGVTDWTDEDILNAIEDAPLPS-GAVTQVAGEIPQAAQQQ 489 (491) T ss_pred HHHHHHhCCCCCccHHHHHHHHHhcCCCC-Cccccccccchhhhhhc Confidence 87654 3332 3455666775542110 00001111111111122 No 80 >protein:vir:96783 Length: 488 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224240;genbank:gi:62362375;genbank:GeneID:3345722 Probab=99.90 E-value=1.7e-23 Score=145.40 Aligned_cols=433 Identities=9% Similarity=0.028 Sum_probs=248.7 Q ss_pred CCCc-c------cCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhcc--CCcccccccccccccccccccc Q lcl|Aclame:pro 1 MLNI-Y------ISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYG--NTDVNNKRRYYLLDGAKVDDFT 71 (479) Q Consensus 1 ~~~~-~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g--~~~~~~~~~~~~~~~~~~~~~~ 71 (479) |+.. | .|+-+...-+.....+.|-. +...-.. .. ......|-.- .++...........+....... T Consensus 1 ~~~~~~~~~~~~~m~V~~~hp~y~a~~~~W~~--~~d~g~~-~~--k~~g~~YLPk~~~~~~~~~~d~~y~~~~~~~~~~ 75 (488) T protein:vir:96 1 MLKCLYIKHRGFFMLTPIYHPDYLVNAPQWLR--NLDCVMD-NI--KRKKQTYLPNLGAIPPEAKTDPKVTALAAKIEKD 75 (488) T ss_pred CceeEEEeecceeecccccCHHHHHHhhhhhH--hhhhhhH-HH--HHhhhhcCCCCCCccccccCcchhhhhhccchhh Confidence 3321 1 33333334444444444421 1111111 00 0111222110 0000000000000000000000 Q ss_pred cCcc---e-eecchHHHHHHHHHhhhhccCeeecCCc-hhHHHHHHHH--HhcCHHHHHHHHHHHHHhCCeEEEEEEeCC Q lcl|Aclame:pro 72 KVNN---K-AINNYHKLLVDQKVGYSVGNPIVFNADD-DNLTKLLNDL--LGEEFDDTITELYLNASNKGVEWLHPYINR 144 (479) Q Consensus 72 ~~~~---r-i~~n~~~~iv~~~a~~l~g~~~~~~~~~-~~~~~~~~~~--~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~ 144 (479) ..++ | +-.|+++..++..++++|.++|+++.++ +....+++.. .+++++.+++.+++.++.+|+++++|..++ T Consensus 76 y~~~~~~rA~~~n~~~~tl~~l~G~vfrk~p~~~~~~~~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~ 155 (488) T protein:vir:96 76 WEDLTWRLANYVNIVNPTMNAITGAVMRREPEFDTMDNPVLIGLRDNIDGKGNGIDQECKQALNALQWGSRCGWLVRSHP 155 (488) T ss_pred hHhhhhhccccCchhHHHHHHhcchhhccCceeccCCcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCC Confidence 0000 1 2359999999999999999999987654 5677777755 458899999999999999999999999876 Q ss_pred CC-----------ceEEEEEccceeEEEEcCC--C-CCceEEEEEEEeeecccC-----ceEEEEEEEeCCcEEEEEEcC Q lcl|Aclame:pro 145 KG-----------EFKYVIIPAEEAIPIWDSK--R-QRELVAFIRFYYIEDIDG-----NKIKRVEYYTENDITYFIERG 205 (479) Q Consensus 145 ~~-----------~~~i~~~~p~~~~~~~d~~--~-~~~~~~~i~~~~~~~~~~-----~~~~~~~~y~~~~i~~~~~~~ 205 (479) .+ +|.+..++|.+++-. +.. + ...+..++..-.+.+.++ +....+-.++++.+..++... T Consensus 156 ~~~T~ade~~~~~rPy~~~~~a~~IinW-~~~~v~G~~~L~~v~lrE~~~~~D~~~~~~~~~~~~~~l~~g~~~v~~~~~ 234 (488) T protein:vir:96 156 ESATMADWNKGKKLPTAAFYDALHIIDW-EVEYIDGEEKLTYLSLLEDYQERDGGTYVSKQRLINHRLVDGLCEFQEVTD 234 (488) T ss_pred CcCCHHHHHHhcCCcEEEEechhhhcCc-ceeccCCceeeEEEEEEEEEEeccCCCcccceEEEEEEEECcEEEEEEEec Confidence 54 488999999998753 321 2 223444332222222222 223333345555544444433 Q ss_pred CccccccccccccccccccccccccccccccccccceEEecCCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 206 NSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE----KCVSDLTFYKSLIDIYDNNISTLADNLDEIQE 281 (479) Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~----~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~ 281 (479) +... ..+.......|+++.||||++.... .+.+-|.++..+--+.-+..|++.+.+...++ T Consensus 235 ~~~~---------------~e~~~~~~g~~~l~~IP~v~~~~~~~~~~~~~pPLldLA~lnl~Hy~~ssd~~~il~~~~~ 299 (488) T protein:vir:96 235 DEYS---------------DEWTPVLINSKQSDTIPFFLASSQSNEWCIDSTPLTSLAEISLSIYVMNAYSNKAMILANE 299 (488) T ss_pred CCcc---------------cceEeecCCCcccCeeEEEEEecCCCCCCCCCCchHHHHHHHHHHHhhhhHHHHHHHhcCC Confidence 3221 1122334567899999999996432 25567889999988888999999999999999 Q ss_pred ceeeeecCCccchhhHHHHhhcccc------eecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccc Q lcl|Aclame:pro 282 VIYVLKEYPGTSLQEFIDNIRYYKS------IKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDK 355 (479) Q Consensus 282 p~l~~~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~ 355 (479) |++++.+.+ ...+ ........++ ....+.|+++|++.+.+.- .++.++.+++.+..++...- ...++. T Consensus 300 p~lv~~~~~-~~~~-~~~~~~~~g~~~~~~~~~~~~~g~~~~~e~~~~~l-~~~~l~~l~~qm~~~Ga~l~---~~~~~~ 373 (488) T protein:vir:96 300 AKWMVDMGD-MNKT-MASEMNPLGFTLAGRMPYYVKNGDVKVIQAQFSPE-TENKVEKLFEQAVKVGASLF---TQQSNE 373 (488) T ss_pred ceeeeccCC-CCcc-cccccccceeeecccccccccCCceeecCCchhHH-HHHHHHHHHHHHHHHhHhhc---cCCCcc Confidence 999874332 2211 1111111111 1122456778877664433 36678888888877654221 123457 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeC-CCCCCC-HHHHHHHHHHH--hcc Q lcl|Aclame:pro 356 SGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFN-HSMIIN-EAEKIDMAAKS--TGI 431 (479) Q Consensus 356 Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~-~~~p~d-~~e~a~~~~k~--~g~ 431 (479) ||++.+.......+........+++++.+++++++.+++...... +...+++..+ +..... ..+.++++.++ +|. T Consensus 374 Ta~~~~~~~~~~~S~L~~~a~~le~al~~~l~~~A~w~g~~~~~~-~~~~~~~~in~dF~~~~ld~~~~~al~~~~~~G~ 452 (488) T protein:vir:96 374 TATGAAIRSGSSTASMATLGNNVEDTVRNMLRFIMRYFEGTNLYV-NPDELVFKLNRDYFDVEVNPQMLQVAYAAMMEGN 452 (488) T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-CccceEEEeccCCCCccCCHHHHHHHHHHHhcCC Confidence 999999999999999999999999999999999999988754321 1122333332 222222 34456666665 789 Q ss_pred CChHHHHHhC---CCCC---CHHHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 432 VSDETIVSNH---PWVE---DVNDELERLKKQEDTQKEYD 465 (479) Q Consensus 432 is~et~~~~l---~~~~---d~~~El~~i~~E~~~~~~~~ 465 (479) ||++|.+..| +.++ +.++|.++|+++ .--. T Consensus 453 Is~~t~~~~L~~~gvl~~d~~~e~~~~~ie~~----g~~~ 488 (488) T protein:vir:96 453 LPQVSWFELLKRARVVRGDMSKEEFDEHIAEL----GFGM 488 (488) T ss_pred CCHHHHHHHHHhCCcCCccCCHHHHHHHHhhc----CCCC Confidence 9999997654 3332 244555555432 1101 No 81 >protein:vir:93630 Length: 776 # NCBI annotation: Bcep22gp51 # Family: family:all:487 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944280;genbank:gi:38640357;genbank:GeneID:2658279 Probab=99.83 E-value=7.9e-20 Score=125.32 Aligned_cols=461 Identities=13% Similarity=0.101 Sum_probs=230.3 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHH-------HhhH--HHHHHHHHHhccCCcccccccccccccccccccc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYIL-------KHRP--EKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFT 71 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~--~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~ 71 (479) |-+.+.-+.+.- ....+.....+.+.+++. .++. .....-.+||.|+|-... .. ...+.. T Consensus 23 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw~~~-~~------~~l~~~- 91 (776) T protein:vir:93 23 SPGEDAAQREKP---ANPLDSEQAVELHSRLLSYYRQELSRQQDNRAEMAVDEDYYDNIQWSQD-EI------DELKER- 91 (776) T ss_pred CCCCcccchhcc---cCCCCCHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCHH-HH------HHHHhc- Confidence 223332222221 223333333333333222 2111 123456789999973211 00 111111 Q ss_pred cCcceeecchHHHHHHHHHhhhhccCee--ecCC---chhHH----HHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEE Q lcl|Aclame:pro 72 KVNNKAINNYHKLLVDQKVGYSVGNPIV--FNAD---DDNLT----KLLNDLL-GEEFDDTITELYLNASNKGVEWLHPY 141 (479) Q Consensus 72 ~~~~ri~~n~~~~iv~~~a~~l~g~~~~--~~~~---~~~~~----~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~ 141 (479) ..-.+.+|.++.+|+.+.++...+.+. +.+. +.+.. .+++.+. .|+++.....+..+++++|.+|+.|+ T Consensus 92 -g~p~~~~N~i~~~i~~v~g~~~~nr~~~~~~p~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~~~af~d~~~~G~G~~~v~ 170 (776) T protein:vir:93 92 -GQAPTVYNVISQSVNWIIGSEKRGRSDFKVLPRRKDGGKAAERKTALLKYLSDVNHTPFERSMAFEETTKAGIGWLESQ 170 (776) T ss_pred -CCceEEecchHHHHHHHHHHHHhCCcceEEecCChhHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhhhcCcceEEEE Confidence 223478999999999999999887554 3332 23333 3444443 47899999999999999999999998 Q ss_pred eCCC--C-ceEEEEEccceeEEEEcCCCCC----ceEEEEEE-Ee-e---------------------------e----- Q lcl|Aclame:pro 142 INRK--G-EFKYVIIPAEEAIPIWDSKRQR----ELVAFIRF-YY-I---------------------------E----- 180 (479) Q Consensus 142 ~d~~--~-~~~i~~~~p~~~~~~~d~~~~~----~~~~~i~~-~~-~---------------------------~----- 180 (479) ++.+ + .+++.+++|.+++. |+.... ...++++. |. . . T Consensus 171 ~d~~~~~~~~~~~~~~p~~i~~--Dp~a~~~D~sDar~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (776) T protein:vir:93 171 VQDENDGEPIYAGAESWRNILW--DSTYRRLDMDDCRYIFRVKWVDLDVMLAIFPERAAQLRAAAVDNFETWGTDDIDGD 248 (776) T ss_pred eeccCCCCceEeeccChhheee--ccccccCCHHHHhhhhhhccCCHHHHHHhcCCchHHHHHhhhhcccccchhccccc Confidence 8764 3 45567788888764 543210 11111110 00 0 0 Q ss_pred --------------------cccCceEEEEEEEeCCcEEEEEEcCC-ccccccccccc---------------------c Q lcl|Aclame:pro 181 --------------------DIDGNKIKRVEYYTENDITYFIERGN-SFIQEFLYDEY---------------------G 218 (479) Q Consensus 181 --------------------~~~~~~~~~~~~y~~~~i~~~~~~~~-~~~~~~~~~~~---------------------~ 218 (479) ....+.+..+++|....+...+..+. +.......+.. . T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~E~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 328 (776) T protein:vir:93 249 DAMDSPEYERSMNSVTAGAVAYARKRVRMIEAWFRMPVRVQRLKGRNSDFRGEVFDPNDERHVLEVESGRAVLAVSPMMR 328 (776) T ss_pred ccccccccccccccccccccccCCCeEEEEEEEEeeeeehhhcccccccccceeecccchHHHHHhhcCceeehheeeee Confidence 00112344566665443322211110 00000000000 0 Q ss_pred cccccccccc--ccccccccccccceEEecC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc Q lcl|Aclame:pro 219 KMTDIQEGHF--RINNKEQGWGKVPFIPFKN-----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG 291 (479) Q Consensus 219 ~~~~~~~~~~--~~~~~~~~~g~vPvv~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~ 291 (479) ...-...+.. .....+.+.+++|+|++.. +..|.|.+..+++.++.+|...|.+.+.+. +.++++..|... T Consensus 329 v~~~~~~g~~~l~~~~~p~~~~~~Pfv~~~~~~~~~~~~~~G~v~~~~d~Q~~~N~~~s~~~~~l~--~~~~~~~~gav~ 406 (776) T protein:vir:93 329 MHCAIMTTRDLMWAGPSPYRHNRYPFTPIWGFRRARDGMPYGVIRFMRGMQDDVNKRLSKALYILS--TNKVLMEEGAVD 406 (776) T ss_pred eEEEEEecchhhhccCCCCCCCccceEEecCceecccccccchHHhhhHHHHHHHHHHHHHHHhhc--CCceeecccccc Confidence 0000011111 1233445568899998865 335789999999999999999999988763 455556555432 Q ss_pred cchhhHHH-HhhcccceecCCCC--cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc-ccHHHHHHHHHHH Q lcl|Aclame:pro 292 TSLQEFID-NIRYYKSIKVDGGG--GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD-KSGVALKFLYSLL 367 (479) Q Consensus 292 ~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~-~Sg~Ai~~~~~~l 367 (479) +.+++.. ..+.+.++.+..++ ..++.....-..++...++.+...|..+++..+...|..+| .||+|+..+.... T Consensus 407 -~~d~~~~~~~rp~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGi~~~~~G~~~n~~Sg~ai~~~~~~~ 485 (776) T protein:vir:93 407 -DIDEFRREAARPDAVMTVKNGKLGAVKMDVDRDLAPAHLELASRSIQMIQQVGGVTDEMLGRTTNAVSGVAIQARQEQG 485 (776) T ss_pred -chHHHHHhcccCCceeeeCCccccccccccCcCccHHHHHHHHHHHHHHHHhhCcChHHhCCCcchhhHHHHHHHHHHH Confidence 2333332 23456667665544 33443333234567888888999999998888777776555 7999999888888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----------ccc----------------ceeeEEeCCCCCCCHHH Q lcl|Aclame:pro 368 DLKCSKTEKKFKKAIRELLWFVCEYLKISGNKS-----------YDY----------------KTVQITFNHSMIINEAE 420 (479) Q Consensus 368 ~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~-----------~~~----------------~~i~i~f~~~~p~d~~e 420 (479) ........+.|..+++++.++++.++....... ..+ .+|.|.=.+..+.-..+ T Consensus 486 ~~~~~~~~dn~~~~~~~~~~~~l~li~~~~~~~r~~ri~~~~~~~~~v~in~~~~~nd~~~~~~dv~v~~~~~~~s~r~~ 565 (776) T protein:vir:93 486 SVATNKLFDNLRLAFQQHGEKELSLIEQYMTEEKQFRITNSRGNPEYVTVNDGLPENDITRTKADFIIDEAEWRATMRQA 565 (776) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEEeecCCCcceEEecccchhhhhccceeeEEEeecccchhHHHH Confidence 888888888888888888877776655421100 000 12222222222222333 Q ss_pred HHHHHHHHhccCChHH-------HHHhCCCCCCHHHHHHHHHHHHH---------------------HHHhhhhc-cCCC Q lcl|Aclame:pro 421 KIDMAAKSTGIVSDET-------IVSNHPWVEDVNDELERLKKQED---------------------TQKEYDDL-IPNN 471 (479) Q Consensus 421 ~a~~~~k~~g~is~et-------~~~~l~~~~d~~~El~~i~~E~~---------------------~~~~~~~~-~~~~ 471 (479) ..+.++.+.+.+..+. +++..++ .+.++-.+++.+... ......+. .... T Consensus 566 ~~~~l~ql~~~~~p~~~~~~~~~~~e~~d~-p~~~e~~~~l~~~~~~~~p~q~~~~~e~~~~qq~q~~~~q~q~~~~~a~ 644 (776) T protein:vir:93 566 AVAELMEVIGKMPPEIALTMLDLLVENMDI-PNRDELVKRIRAVNGQKDPDQDEPTPEEIAREQAQQQQQQYNDALAIAT 644 (776) T ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcCc-cchHHHHHHHHHhhcccccchhhcchhHHHHHHHhhHHHHHHHHHhhhh Confidence 3444444433332221 1222221 111111222221110 00000000 0000 Q ss_pred CCC-----CcCCC Q lcl|Aclame:pro 472 QDG-----VIDET 479 (479) Q Consensus 472 ~~~-----~~det 479 (479) ... ...++ T Consensus 645 ~~~~qa~a~~~~a 657 (776) T protein:vir:93 645 LEEQQAKARKAAA 657 (776) T ss_pred hhHhhHHHHHHHH Confidence 000 00000 No 82 >protein:vir:108295 Length: 711 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552284;genbank:gi:160700609;genbank:GeneID:5758811 Probab=99.78 E-value=8.1e-18 Score=114.27 Aligned_cols=465 Identities=13% Similarity=0.074 Sum_probs=237.2 Q ss_pred CC-CcccCcHHHHH---HHHhccChHHHHHHHHHHHHH----hh-----HHHHHHHHHHhccCCcccccccccccccccc Q lcl|Aclame:pro 1 ML-NIYISETDLIK---VQLKKESTINLVKVIEHYILK----HR-----PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKV 67 (479) Q Consensus 1 ~~-~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~----~~-----~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~ 67 (479) |. ..|-++-..+. .-....+..+..+.+.++... +. +.....-.+||.|+|-... .. ... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw~~~-~~------~~l 73 (711) T protein:vir:10 1 MAKKQKKSRVEQLYAKKAKVYAKNNDDDRALLATARERARDGATYWKDNWEAAEDDLKFLGGEQWPSQ-VR------TER 73 (711) T ss_pred CCcccccccccchhHHHHHhcccCcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCCCHH-HH------HHH Confidence 44 34444432221 111222233333333322221 11 2224455789999873211 00 111 Q ss_pred cccccCcceeecchHHHHHHHHHhhhhccCeee--cC-------------------------CchhHHHH----HHHH-H Q lcl|Aclame:pro 68 DDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVF--NA-------------------------DDDNLTKL----LNDL-L 115 (479) Q Consensus 68 ~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~--~~-------------------------~~~~~~~~----~~~~-~ 115 (479) +...+ -.+.+|.++.+|+.++++...+.+.+ .+ ++.+..+. ++.+ . T Consensus 74 ~~~g~--p~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ae~l~~~~~~~~~ 151 (711) T protein:vir:10 74 ELEQR--PCLVNNVLPTFVDQVLGDQRQNRPAIKVSSTEVTRVPDAESGEDTTLKISNVAGKNDYELAEVFTGLIKNIEY 151 (711) T ss_pred HhcCC--CcEEEcchHHHHHHHhhhHhhCCcceEEecccccchhhhhhhhccccccccCCChhHHHHHHHHHHHHHHHHH Confidence 11222 24688999999999999998877654 22 12233333 3333 3 Q ss_pred hcCHHHHHHHHHHHHHhCCeEEEEEEeCC------CCceEEEEE-ccceeEEEEcCCCC------CceEEEEEEEeee-c Q lcl|Aclame:pro 116 GEEFDDTITELYLNASNKGVEWLHPYINR------KGEFKYVII-PAEEAIPIWDSKRQ------RELVAFIRFYYIE-D 181 (479) Q Consensus 116 ~n~~~~~~~~~~~~~~~~G~~~~~v~~d~------~~~~~i~~~-~p~~~~~~~d~~~~------~~~~~~i~~~~~~-~ 181 (479) .|+.+.....+..+++++|.+|+.|+.|. +|.++|..+ +|.+++ ||+... ...++ .+.|... + T Consensus 152 ~~~~~~~~s~af~d~~~~G~G~~ev~~d~~~~d~~~~e~~i~~v~~p~~v~--~Dp~a~~~D~sDar~~~-~~~~~~~~~ 228 (711) T protein:vir:10 152 NCDAETEYDIAFQGAVESGMGYLRVRSDYLADDSFEQDLIIEAIQNQFSVT--IDPDAKKRDRSDMNWCL-IDDTMSKEK 228 (711) T ss_pred hcChhHHHHHHHHHhhhcCcceEEEEecccCCCCCCCCeEEeeecChhhee--eCccccccChhhhccee-eeecCCHHH Confidence 47888888999999999999999886542 478888777 698864 565321 11122 2222211 0 Q ss_pred ------------------------ccCceEEEEEEEeCCcEEEEEE-cCCcccccccc---------------------- Q lcl|Aclame:pro 182 ------------------------IDGNKIKRVEYYTENDITYFIE-RGNSFIQEFLY---------------------- 214 (479) Q Consensus 182 ------------------------~~~~~~~~~~~y~~~~i~~~~~-~~~~~~~~~~~---------------------- 214 (479) .+.+.+...++|......+... .+.+....... T Consensus 229 ~~~~yp~~a~~~~~~~~~~~~~~~~~~~~vrv~E~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 308 (711) T protein:vir:10 229 FKALYPDATAEPVYEDSVADYDTWFTEKSVRVSEYFTREPVIREIALLSDGRSFWLDALEDIVDELLEAGISIVRTRKVK 308 (711) T ss_pred HHHhCCchhhhhhhcccccccCcccCcceeeEEEEEeeeeeeeEEEeecCCceeccCcchhHHHHHHhcCchhhhhhhhc Confidence 0012234455554433222111 11110000000 Q ss_pred ccccccccccccccccccccccccccceEEecC-------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeee- Q lcl|Aclame:pro 215 DEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN-------NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL- 286 (479) Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-------~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~- 286 (479) .....+....+.....+..+.+.+++|+|+|.- ...+.|.+..+++.++.+|...|.+...+...+.+.++. T Consensus 309 ~~~v~~~~~~G~~~L~~~~p~~~~~~P~vp~~g~r~~~d~~~~~~G~vr~~~d~Qr~~N~~~s~~~~~l~~~~~~~~~~~ 388 (711) T protein:vir:10 309 TFKTYWRKITGANVLEGPVEIPSTTIPVIPVWGKSLIIKKKEIFRSIIRHSKDAQRMANYWDSAATETVALAPKAPFIGS 388 (711) T ss_pred eeeEEEEEEecceeecCCCCCCCCcccEEEEeeeeeccccccccchhhhhhhhhHHHHHHHHHHHHHHHHhcCCCceeec Confidence 000000011111222234455668899887742 223567899999999999999999999999988866655 Q ss_pred ecCCccchhh-HHH-HhhcccceecCCCC----cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc-cccHHH Q lcl|Aclame:pro 287 KEYPGTSLQE-FID-NIRYYKSIKVDGGG----GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG-DKSGVA 359 (479) Q Consensus 287 ~g~~~~~~~~-~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-~~Sg~A 359 (479) .|.. .+.++ +.. ..+.+.++.+..+. .+++...+.-..++...++.....|-..++..+...|..+ +.||+| T Consensus 389 ~gai-~~~~~~~~e~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~i~~~tGi~~~~~G~~~n~~Sg~a 467 (711) T protein:vir:10 389 EGNV-EGREDEWEQANTKNFSLLTYIPQYQGDPGPRRQPPAAVPAAELTLGQNSVEKIKSTMGMYDASLGAMGNETSGRA 467 (711) T ss_pred Cccc-CChHHHHHhccccCCCeeEecccccCcCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCChHHcCCCccchHHHH Confidence 4433 23333 222 23455666665443 3555554555677888888889999888887776666554 479999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CC-cccc------------------------- Q lcl|Aclame:pro 360 LKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG----------NK-SYDY------------------------- 403 (479) Q Consensus 360 i~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~----------~~-~~~~------------------------- 403 (479) +..+..............+..+.+++.++++.++.... .. ..++ T Consensus 468 i~~~q~qg~~~l~~~~dn~~~~~~~~g~~ll~li~~~~~~er~~rI~ged~~~~~v~ln~~~~~~~~G~~~~~nDi~~g~ 547 (711) T protein:vir:10 468 IIARQRQGDRGSFAFIDNLTKSIRRVGKILVEMIPHIYDTERVVRLKFPDETEDFVKLNEQIFDEESGEWVTIHDLNVQK 547 (711) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCcceEEecccccccccccceeeeccceee Confidence 99988888888887788888888777777766544321 10 0000 Q ss_pred ceeeEEeCCCCCCCHHHHHHHHHHHhccCChH------HHHHhCCCCCCHHHHHHHH--------------------HHH Q lcl|Aclame:pro 404 KTVQITFNHSMIINEAEKIDMAAKSTGIVSDE------TIVSNHPWVEDVNDELERL--------------------KKQ 457 (479) Q Consensus 404 ~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~e------t~~~~l~~~~d~~~El~~i--------------------~~E 457 (479) .+|.|.=.+..+.-..+.+..++.+.+.+|.- .+++.+++ .+.++-.+++ .++ T Consensus 548 ~Dv~i~~~p~~~s~r~~~~~~l~ql~~~~p~~~~~~~~~il~~~d~-p~~~el~e~lr~~~~~~~~~~~~~~~~qq~~~e 626 (711) T protein:vir:10 548 YDVVVTTGPAFATQRIEAAEAMIQFAQAVPSAAAVMADLIAQNMDW-PGADVIAERLKKIVPPNVLSKDEREAIEEDMPE 626 (711) T ss_pred eEEEEeeccCchhHHHHHHHHHHHHHhhcchhhhHHHHHHHHhcCC-CCHHHHHHHHHhhcCcccCcchhhhHHHHHHHH Confidence 12233333444444444555555554444321 12232222 1111111111 111 Q ss_pred HHHHHh-hh-h--ccC-----CCCCCCcCCC Q lcl|Aclame:pro 458 EDTQKE-YD-D--LIP-----NNQDGVIDET 479 (479) Q Consensus 458 ~~~~~~-~~-~--~~~-----~~~~~~~det 479 (479) +++... .. + ... .+.....-++ T Consensus 627 ~qq~~~~~q~~~~~~q~~~~qa~ae~~~Aqa 657 (711) T protein:vir:10 627 QTEPTPEQQVEMAKSQADMAQAEADTAQAQA 657 (711) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 111000 00 0 000 0000000000 No 83 >protein:vir:10117 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859247;genbank:gi:32171003;genbank:GeneID:2653343 Probab=99.76 E-value=8.9e-17 Score=108.57 Aligned_cols=460 Identities=13% Similarity=0.070 Sum_probs=227.5 Q ss_pred CCCcc-cCc--H-HHHHHHHhccChHHHHHHHHHHHHHhh--HHHHHHHHHHhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIY-ISE--T-DLIKVQLKKESTINLVKVIEHYILKHR--PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~-~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |-+-- +|. + +.++..+. ..+...+..-+..+. +.......+||.|+|-... .... .....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~~~-~~~~------l~~~g~-- 67 (714) T protein:vir:10 1 MKNETNTMATKNDNGATPRFS----QRQLQALCSDIDSQPKWRDAANKACAYYDGDQLPPE-VLQV------LKDRGQ-- 67 (714) T ss_pred CCcccccccCCCCcchhHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHH-HHHH------HHhcCC-- Confidence 22211 000 0 01111111 112222222222222 2234567889999873211 1111 111122 Q ss_pred ceeecchHHHHHHHHHhhhhccCeee--cC---Cch--hH----HHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEe Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVF--NA---DDD--NL----TKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYI 142 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~--~~---~~~--~~----~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~ 142 (479) -.+.+|.++.+|+..+++...+.+.+ .+ ++. +. +.+++.+. .++.+.....+..+++++|.+|+.++. T Consensus 68 p~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~ 147 (714) T protein:vir:10 68 PMTIHNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRR 147 (714) T ss_pred CcEEeccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEecc Confidence 24688999999999999998887654 33 211 23 33444444 478999999999999999999999988 Q ss_pred CCC---CceEEEEEccceeEEEEcCCC------CCceEEEEEEEee-ec------------------------------- Q lcl|Aclame:pro 143 NRK---GEFKYVIIPAEEAIPIWDSKR------QRELVAFIRFYYI-ED------------------------------- 181 (479) Q Consensus 143 d~~---~~~~i~~~~p~~~~~~~d~~~------~~~~~~~i~~~~~-~~------------------------------- 181 (479) +.| +.++|..++|.+++ ||+.. ....++ .+.|.. .. T Consensus 148 ~~d~~~~~i~i~~v~p~~v~--~Dp~a~~~D~sDar~~~-~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~ 224 (714) T protein:vir:10 148 NSDPFGPEFKVSTVSRNEVF--WDWLSREADLSDCRWLM-RRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQ 224 (714) T ss_pred ccCCCCCCeEEEecchhhee--eccccccCChhhcccee-eeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccccc Confidence 754 56899999999976 45422 111222 111211 00 Q ss_pred -----------------------ccCceEEEEEEEeCCcEEEEEEcC-Ccccccccc-------------------cccc Q lcl|Aclame:pro 182 -----------------------IDGNKIKRVEYYTENDITYFIERG-NSFIQEFLY-------------------DEYG 218 (479) Q Consensus 182 -----------------------~~~~~~~~~~~y~~~~i~~~~~~~-~~~~~~~~~-------------------~~~~ 218 (479) .+...+..+++|........+... ++....... .... T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~r 304 (714) T protein:vir:10 225 PSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSR 304 (714) T ss_pred ccccccchhhhccccccccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccce Confidence 001223444555433222211111 110000000 0000 Q ss_pred cccccccccccc--ccccccccccceEEecCCC---CC--CchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc Q lcl|Aclame:pro 219 KMTDIQEGHFRI--NNKEQGWGKVPFIPFKNNE---KC--VSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG 291 (479) Q Consensus 219 ~~~~~~~~~~~~--~~~~~~~g~vPvv~~~n~~---~g--~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~ 291 (479) .......+.... .+.|-+.+++|+|++.... .| .|.+..+++.++.+|...|.+...+ .++..++..|... T Consensus 305 v~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~ 382 (714) T protein:vir:10 305 IREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQ 382 (714) T ss_pred EEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCccc Confidence 000011111112 2233344567777765432 22 3678899999999999999988866 4555555555543 Q ss_pred cchhhHHHH-hhcccceecCCCC--------cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc-ccHHHHH Q lcl|Aclame:pro 292 TSLQEFIDN-IRYYKSIKVDGGG--------GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD-KSGVALK 361 (479) Q Consensus 292 ~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~-~Sg~Ai~ 361 (479) ....++... .+.+.++.++.+. .++......-..++...++.....|-.+++..+...|..+| .||+|+. T Consensus 383 ~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~ 462 (714) T protein:vir:10 383 LSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAIS 462 (714) T ss_pred ccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHH Confidence 333333322 3344555554321 12332223334667778888888888888877766666554 6999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCcc-c-----------------------cceee Q lcl|Aclame:pro 362 FLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS----------GNKSY-D-----------------------YKTVQ 407 (479) Q Consensus 362 ~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~----------~~~~~-~-----------------------~~~i~ 407 (479) .+-.............+..+.+++.++++.+.... ++.+. . ..+|. T Consensus 463 ~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~ 542 (714) T protein:vir:10 463 NLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIA 542 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEE Confidence 88777777777777777777777777666544321 11000 0 01222 Q ss_pred EEeCCCCCCCHHHHHHHHHHHhccCChH-------HHHHhCCCCCCHHHHHHHHHHHHH--------------HHHhhhh Q lcl|Aclame:pro 408 ITFNHSMIINEAEKIDMAAKSTGIVSDE-------TIVSNHPWVEDVNDELERLKKQED--------------TQKEYDD 466 (479) Q Consensus 408 i~f~~~~p~d~~e~a~~~~k~~g~is~e-------t~~~~l~~~~d~~~El~~i~~E~~--------------~~~~~~~ 466 (479) |.=.+..|....+.++.++.+.+.++.+ ..++.+++ .+.++-+++|.+-.. +.....+ T Consensus 543 i~~~p~~~t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~-p~~~el~~~ir~~~~~~~~~~~~~~e~q~~~~~~q~ 621 (714) T protein:vir:10 543 LAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDV-PQKQEFVERIRAALGTPKSPDEMTPEEQEVAAQQQA 621 (714) T ss_pred EeeccCchHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCC-CCHHHHHHHHHHHcCCCCCccccchhhHHHHHHHHH Confidence 3333444444555666666665544433 34455443 344444455533100 0000000 Q ss_pred ---cc----CCCCCCCcC----CC Q lcl|Aclame:pro 467 ---LI----PNNQDGVID----ET 479 (479) Q Consensus 467 ---~~----~~~~~~~~d----et 479 (479) .. ..+...... ++ T Consensus 622 ~~~~q~~lq~~~~~a~~~k~eae~ 645 (714) T protein:vir:10 622 LQQQQAELQMREMAGRVAKLEADA 645 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Confidence 00 000000000 00 No 84 >protein:vir:9950 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859080;genbank:gi:32170835;genbank:GeneID:2653184 Probab=99.76 E-value=8.9e-17 Score=108.57 Aligned_cols=460 Identities=13% Similarity=0.070 Sum_probs=227.5 Q ss_pred CCCcc-cCc--H-HHHHHHHhccChHHHHHHHHHHHHHhh--HHHHHHHHHHhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIY-ISE--T-DLIKVQLKKESTINLVKVIEHYILKHR--PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~-~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |-+-- +|. + +.++..+. ..+...+..-+..+. +.......+||.|+|-... .... .....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~~~-~~~~------l~~~g~-- 67 (714) T protein:vir:99 1 MKNETNTMATKNDNGATPRFS----QRQLQALCSDIDSQPKWRDAANKACAYYDGDQLPPE-VLQV------LKDRGQ-- 67 (714) T ss_pred CCcccccccCCCCcchhHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHH-HHHH------HHhcCC-- Confidence 22211 000 0 01111111 112222222222222 2234567889999873211 1111 111122 Q ss_pred ceeecchHHHHHHHHHhhhhccCeee--cC---Cch--hH----HHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEe Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVF--NA---DDD--NL----TKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYI 142 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~--~~---~~~--~~----~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~ 142 (479) -.+.+|.++.+|+..+++...+.+.+ .+ ++. +. +.+++.+. .++.+.....+..+++++|.+|+.++. T Consensus 68 p~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~ 147 (714) T protein:vir:99 68 PMTIHNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRR 147 (714) T ss_pred CcEEeccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEecc Confidence 24688999999999999998887654 33 211 23 33444444 478999999999999999999999988 Q ss_pred CCC---CceEEEEEccceeEEEEcCCC------CCceEEEEEEEee-ec------------------------------- Q lcl|Aclame:pro 143 NRK---GEFKYVIIPAEEAIPIWDSKR------QRELVAFIRFYYI-ED------------------------------- 181 (479) Q Consensus 143 d~~---~~~~i~~~~p~~~~~~~d~~~------~~~~~~~i~~~~~-~~------------------------------- 181 (479) +.| +.++|..++|.+++ ||+.. ....++ .+.|.. .. T Consensus 148 ~~d~~~~~i~i~~v~p~~v~--~Dp~a~~~D~sDar~~~-~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~ 224 (714) T protein:vir:99 148 NSDPFGPEFKVSTVSRNEVF--WDWLSREADLSDCRWLM-RRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQ 224 (714) T ss_pred ccCCCCCCeEEEecchhhee--eccccccCChhhcccee-eeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccccc Confidence 754 56899999999976 45422 111222 111211 00 Q ss_pred -----------------------ccCceEEEEEEEeCCcEEEEEEcC-Ccccccccc-------------------cccc Q lcl|Aclame:pro 182 -----------------------IDGNKIKRVEYYTENDITYFIERG-NSFIQEFLY-------------------DEYG 218 (479) Q Consensus 182 -----------------------~~~~~~~~~~~y~~~~i~~~~~~~-~~~~~~~~~-------------------~~~~ 218 (479) .+...+..+++|........+... ++....... .... T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~r 304 (714) T protein:vir:99 225 PSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSR 304 (714) T ss_pred ccccccchhhhccccccccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccce Confidence 001223444555433222211111 110000000 0000 Q ss_pred cccccccccccc--ccccccccccceEEecCCC---CC--CchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc Q lcl|Aclame:pro 219 KMTDIQEGHFRI--NNKEQGWGKVPFIPFKNNE---KC--VSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG 291 (479) Q Consensus 219 ~~~~~~~~~~~~--~~~~~~~g~vPvv~~~n~~---~g--~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~ 291 (479) .......+.... .+.|-+.+++|+|++.... .| .|.+..+++.++.+|...|.+...+ .++..++..|... T Consensus 305 v~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~ 382 (714) T protein:vir:99 305 IREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQ 382 (714) T ss_pred EEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCccc Confidence 000011111112 2233344567777765432 22 3678899999999999999988866 4555555555543 Q ss_pred cchhhHHHH-hhcccceecCCCC--------cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc-ccHHHHH Q lcl|Aclame:pro 292 TSLQEFIDN-IRYYKSIKVDGGG--------GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD-KSGVALK 361 (479) Q Consensus 292 ~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~-~Sg~Ai~ 361 (479) ....++... .+.+.++.++.+. .++......-..++...++.....|-.+++..+...|..+| .||+|+. T Consensus 383 ~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~ 462 (714) T protein:vir:99 383 LSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAIS 462 (714) T ss_pred ccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHH Confidence 333333322 3344555554321 12332223334667778888888888888877766666554 6999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCcc-c-----------------------cceee Q lcl|Aclame:pro 362 FLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS----------GNKSY-D-----------------------YKTVQ 407 (479) Q Consensus 362 ~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~----------~~~~~-~-----------------------~~~i~ 407 (479) .+-.............+..+.+++.++++.+.... ++.+. . ..+|. T Consensus 463 ~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~ 542 (714) T protein:vir:99 463 NLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIA 542 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEE Confidence 88777777777777777777777777666544321 11000 0 01222 Q ss_pred EEeCCCCCCCHHHHHHHHHHHhccCChH-------HHHHhCCCCCCHHHHHHHHHHHHH--------------HHHhhhh Q lcl|Aclame:pro 408 ITFNHSMIINEAEKIDMAAKSTGIVSDE-------TIVSNHPWVEDVNDELERLKKQED--------------TQKEYDD 466 (479) Q Consensus 408 i~f~~~~p~d~~e~a~~~~k~~g~is~e-------t~~~~l~~~~d~~~El~~i~~E~~--------------~~~~~~~ 466 (479) |.=.+..|....+.++.++.+.+.++.+ ..++.+++ .+.++-+++|.+-.. +.....+ T Consensus 543 i~~~p~~~t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~-p~~~el~~~ir~~~~~~~~~~~~~~e~q~~~~~~q~ 621 (714) T protein:vir:99 543 LAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDV-PQKQEFVERIRAALGTPKSPDEMTPEEQEVAAQQQA 621 (714) T ss_pred EeeccCchHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCC-CCHHHHHHHHHHHcCCCCCccccchhhHHHHHHHHH Confidence 3333444444555666666665544433 34455443 344444455533100 0000000 Q ss_pred ---cc----CCCCCCCcC----CC Q lcl|Aclame:pro 467 ---LI----PNNQDGVID----ET 479 (479) Q Consensus 467 ---~~----~~~~~~~~d----et 479 (479) .. ..+...... ++ T Consensus 622 ~~~~q~~lq~~~~~a~~~k~eae~ 645 (714) T protein:vir:99 622 LQQQQAELQMREMAGRVAKLEADA 645 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Confidence 00 000000000 00 No 85 >protein:vir:3296 Length: 714 # NCBI annotation: putative portal protein # Family: family:all:487 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049512;genbank:gi:9632518;genbank:GeneID:1262005 Probab=99.76 E-value=8.9e-17 Score=108.57 Aligned_cols=460 Identities=13% Similarity=0.070 Sum_probs=227.5 Q ss_pred CCCcc-cCc--H-HHHHHHHhccChHHHHHHHHHHHHHhh--HHHHHHHHHHhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIY-ISE--T-DLIKVQLKKESTINLVKVIEHYILKHR--PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~-~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |-+-- +|. + +.++..+. ..+...+..-+..+. +.......+||.|+|-... .... .....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~~~-~~~~------l~~~g~-- 67 (714) T protein:vir:32 1 MKNETNTMATKNDNGATPRFS----QRQLQALCSDIDSQPKWRDAANKACAYYDGDQLPPE-VLQV------LKDRGQ-- 67 (714) T ss_pred CCcccccccCCCCcchhHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHH-HHHH------HHhcCC-- Confidence 22211 000 0 01111111 112222222222222 2234567889999873211 1111 111122 Q ss_pred ceeecchHHHHHHHHHhhhhccCeee--cC---Cch--hH----HHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEe Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVF--NA---DDD--NL----TKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYI 142 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~--~~---~~~--~~----~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~ 142 (479) -.+.+|.++.+|+..+++...+.+.+ .+ ++. +. +.+++.+. .++.+.....+..+++++|.+|+.++. T Consensus 68 p~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~ 147 (714) T protein:vir:32 68 PMTIHNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRR 147 (714) T ss_pred CcEEeccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEecc Confidence 24688999999999999998887654 33 211 23 33444444 478999999999999999999999988 Q ss_pred CCC---CceEEEEEccceeEEEEcCCC------CCceEEEEEEEee-ec------------------------------- Q lcl|Aclame:pro 143 NRK---GEFKYVIIPAEEAIPIWDSKR------QRELVAFIRFYYI-ED------------------------------- 181 (479) Q Consensus 143 d~~---~~~~i~~~~p~~~~~~~d~~~------~~~~~~~i~~~~~-~~------------------------------- 181 (479) +.| +.++|..++|.+++ ||+.. ....++ .+.|.. .. T Consensus 148 ~~d~~~~~i~i~~v~p~~v~--~Dp~a~~~D~sDar~~~-~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~ 224 (714) T protein:vir:32 148 NSDPFGPEFKVSTVSRNEVF--WDWLSREADLSDCRWLM-RRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQ 224 (714) T ss_pred ccCCCCCCeEEEecchhhee--eccccccCChhhcccee-eeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccccc Confidence 754 56899999999976 45422 111222 111211 00 Q ss_pred -----------------------ccCceEEEEEEEeCCcEEEEEEcC-Ccccccccc-------------------cccc Q lcl|Aclame:pro 182 -----------------------IDGNKIKRVEYYTENDITYFIERG-NSFIQEFLY-------------------DEYG 218 (479) Q Consensus 182 -----------------------~~~~~~~~~~~y~~~~i~~~~~~~-~~~~~~~~~-------------------~~~~ 218 (479) .+...+..+++|........+... ++....... .... T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~r 304 (714) T protein:vir:32 225 PSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSR 304 (714) T ss_pred ccccccchhhhccccccccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccce Confidence 001223444555433222211111 110000000 0000 Q ss_pred cccccccccccc--ccccccccccceEEecCCC---CC--CchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc Q lcl|Aclame:pro 219 KMTDIQEGHFRI--NNKEQGWGKVPFIPFKNNE---KC--VSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG 291 (479) Q Consensus 219 ~~~~~~~~~~~~--~~~~~~~g~vPvv~~~n~~---~g--~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~ 291 (479) .......+.... .+.|-+.+++|+|++.... .| .|.+..+++.++.+|...|.+...+ .++..++..|... T Consensus 305 v~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~ 382 (714) T protein:vir:32 305 IREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQ 382 (714) T ss_pred EEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCccc Confidence 000011111112 2233344567777765432 22 3678899999999999999988866 4555555555543 Q ss_pred cchhhHHHH-hhcccceecCCCC--------cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc-ccHHHHH Q lcl|Aclame:pro 292 TSLQEFIDN-IRYYKSIKVDGGG--------GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD-KSGVALK 361 (479) Q Consensus 292 ~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~-~Sg~Ai~ 361 (479) ....++... .+.+.++.++.+. .++......-..++...++.....|-.+++..+...|..+| .||+|+. T Consensus 383 ~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~ 462 (714) T protein:vir:32 383 LSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAIS 462 (714) T ss_pred ccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHH Confidence 333333322 3344555554321 12332223334667778888888888888877766666554 6999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCcc-c-----------------------cceee Q lcl|Aclame:pro 362 FLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS----------GNKSY-D-----------------------YKTVQ 407 (479) Q Consensus 362 ~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~----------~~~~~-~-----------------------~~~i~ 407 (479) .+-.............+..+.+++.++++.+.... ++.+. . ..+|. T Consensus 463 ~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~ 542 (714) T protein:vir:32 463 NLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIA 542 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEE Confidence 88777777777777777777777777666544321 11000 0 01222 Q ss_pred EEeCCCCCCCHHHHHHHHHHHhccCChH-------HHHHhCCCCCCHHHHHHHHHHHHH--------------HHHhhhh Q lcl|Aclame:pro 408 ITFNHSMIINEAEKIDMAAKSTGIVSDE-------TIVSNHPWVEDVNDELERLKKQED--------------TQKEYDD 466 (479) Q Consensus 408 i~f~~~~p~d~~e~a~~~~k~~g~is~e-------t~~~~l~~~~d~~~El~~i~~E~~--------------~~~~~~~ 466 (479) |.=.+..|....+.++.++.+.+.++.+ ..++.+++ .+.++-+++|.+-.. +.....+ T Consensus 543 i~~~p~~~t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~-p~~~el~~~ir~~~~~~~~~~~~~~e~q~~~~~~q~ 621 (714) T protein:vir:32 543 LAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDV-PQKQEFVERIRAALGTPKSPDEMTPEEQEVAAQQQA 621 (714) T ss_pred EeeccCchHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCC-CCHHHHHHHHHHHcCCCCCccccchhhHHHHHHHHH Confidence 3333444444555666666665544433 34455443 344444455533100 0000000 Q ss_pred ---cc----CCCCCCCcC----CC Q lcl|Aclame:pro 467 ---LI----PNNQDGVID----ET 479 (479) Q Consensus 467 ---~~----~~~~~~~~d----et 479 (479) .. ..+...... ++ T Consensus 622 ~~~~q~~lq~~~~~a~~~k~eae~ 645 (714) T protein:vir:32 622 LQQQQAELQMREMAGRVAKLEADA 645 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Confidence 00 000000000 00 No 86 >protein:vir:817 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050550;genbank:gi:9633447;genbank:GeneID:1262279 Probab=99.76 E-value=8.9e-17 Score=108.57 Aligned_cols=460 Identities=13% Similarity=0.070 Sum_probs=227.5 Q ss_pred CCCcc-cCc--H-HHHHHHHhccChHHHHHHHHHHHHHhh--HHHHHHHHHHhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIY-ISE--T-DLIKVQLKKESTINLVKVIEHYILKHR--PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~-~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |-+-- +|. + +.++..+. ..+...+..-+..+. +.......+||.|+|-... .... .....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~~~-~~~~------l~~~g~-- 67 (714) T protein:vir:81 1 MKNETNTMATKNDNGATPRFS----QRQLQALCSDIDSQPKWRDAANKACAYYDGDQLPPE-VLQV------LKDRGQ-- 67 (714) T ss_pred CCcccccccCCCCcchhHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHH-HHHH------HHhcCC-- Confidence 22211 000 0 01111111 112222222222222 2234567889999873211 1111 111122 Q ss_pred ceeecchHHHHHHHHHhhhhccCeee--cC---Cch--hH----HHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEe Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVF--NA---DDD--NL----TKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYI 142 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~--~~---~~~--~~----~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~ 142 (479) -.+.+|.++.+|+..+++...+.+.+ .+ ++. +. +.+++.+. .++.+.....+..+++++|.+|+.++. T Consensus 68 p~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~ 147 (714) T protein:vir:81 68 PMTIHNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRR 147 (714) T ss_pred CcEEeccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEecc Confidence 24688999999999999998887654 33 211 23 33444444 478999999999999999999999988 Q ss_pred CCC---CceEEEEEccceeEEEEcCCC------CCceEEEEEEEee-ec------------------------------- Q lcl|Aclame:pro 143 NRK---GEFKYVIIPAEEAIPIWDSKR------QRELVAFIRFYYI-ED------------------------------- 181 (479) Q Consensus 143 d~~---~~~~i~~~~p~~~~~~~d~~~------~~~~~~~i~~~~~-~~------------------------------- 181 (479) +.| +.++|..++|.+++ ||+.. ....++ .+.|.. .. T Consensus 148 ~~d~~~~~i~i~~v~p~~v~--~Dp~a~~~D~sDar~~~-~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~ 224 (714) T protein:vir:81 148 NSDPFGPEFKVSTVSRNEVF--WDWLSREADLSDCRWLM-RRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQ 224 (714) T ss_pred ccCCCCCCeEEEecchhhee--eccccccCChhhcccee-eeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccccc Confidence 754 56899999999976 45422 111222 111211 00 Q ss_pred -----------------------ccCceEEEEEEEeCCcEEEEEEcC-Ccccccccc-------------------cccc Q lcl|Aclame:pro 182 -----------------------IDGNKIKRVEYYTENDITYFIERG-NSFIQEFLY-------------------DEYG 218 (479) Q Consensus 182 -----------------------~~~~~~~~~~~y~~~~i~~~~~~~-~~~~~~~~~-------------------~~~~ 218 (479) .+...+..+++|........+... ++....... .... T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~r 304 (714) T protein:vir:81 225 PSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSR 304 (714) T ss_pred ccccccchhhhccccccccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccce Confidence 001223444555433222211111 110000000 0000 Q ss_pred cccccccccccc--ccccccccccceEEecCCC---CC--CchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc Q lcl|Aclame:pro 219 KMTDIQEGHFRI--NNKEQGWGKVPFIPFKNNE---KC--VSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG 291 (479) Q Consensus 219 ~~~~~~~~~~~~--~~~~~~~g~vPvv~~~n~~---~g--~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~ 291 (479) .......+.... .+.|-+.+++|+|++.... .| .|.+..+++.++.+|...|.+...+ .++..++..|... T Consensus 305 v~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~ 382 (714) T protein:vir:81 305 IREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQ 382 (714) T ss_pred EEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCccc Confidence 000011111112 2233344567777765432 22 3678899999999999999988866 4555555555543 Q ss_pred cchhhHHHH-hhcccceecCCCC--------cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc-ccHHHHH Q lcl|Aclame:pro 292 TSLQEFIDN-IRYYKSIKVDGGG--------GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD-KSGVALK 361 (479) Q Consensus 292 ~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~-~Sg~Ai~ 361 (479) ....++... .+.+.++.++.+. .++......-..++...++.....|-.+++..+...|..+| .||+|+. T Consensus 383 ~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~ 462 (714) T protein:vir:81 383 LSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAIS 462 (714) T ss_pred ccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHH Confidence 333333322 3344555554321 12332223334667778888888888888877766666554 6999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCcc-c-----------------------cceee Q lcl|Aclame:pro 362 FLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS----------GNKSY-D-----------------------YKTVQ 407 (479) Q Consensus 362 ~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~----------~~~~~-~-----------------------~~~i~ 407 (479) .+-.............+..+.+++.++++.+.... ++.+. . ..+|. T Consensus 463 ~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~ 542 (714) T protein:vir:81 463 NLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIA 542 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEE Confidence 88777777777777777777777777666544321 11000 0 01222 Q ss_pred EEeCCCCCCCHHHHHHHHHHHhccCChH-------HHHHhCCCCCCHHHHHHHHHHHHH--------------HHHhhhh Q lcl|Aclame:pro 408 ITFNHSMIINEAEKIDMAAKSTGIVSDE-------TIVSNHPWVEDVNDELERLKKQED--------------TQKEYDD 466 (479) Q Consensus 408 i~f~~~~p~d~~e~a~~~~k~~g~is~e-------t~~~~l~~~~d~~~El~~i~~E~~--------------~~~~~~~ 466 (479) |.=.+..|....+.++.++.+.+.++.+ ..++.+++ .+.++-+++|.+-.. +.....+ T Consensus 543 i~~~p~~~t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~-p~~~el~~~ir~~~~~~~~~~~~~~e~q~~~~~~q~ 621 (714) T protein:vir:81 543 LAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDV-PQKQEFVERIRAALGTPKSPDEMTPEEQEVAAQQQA 621 (714) T ss_pred EeeccCchHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCC-CCHHHHHHHHHHHcCCCCCccccchhhHHHHHHHHH Confidence 3333444444555666666665544433 34455443 344444455533100 0000000 Q ss_pred ---cc----CCCCCCCcC----CC Q lcl|Aclame:pro 467 ---LI----PNNQDGVID----ET 479 (479) Q Consensus 467 ---~~----~~~~~~~~d----et 479 (479) .. ..+...... ++ T Consensus 622 ~~~~q~~lq~~~~~a~~~k~eae~ 645 (714) T protein:vir:81 622 LQQQQAELQMREMAGRVAKLEADA 645 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Confidence 00 000000000 00 No 87 >protein:vir:2764 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612881;genbank:gi:20065798;genbank:GeneID:935623 Probab=99.76 E-value=8.9e-17 Score=108.57 Aligned_cols=460 Identities=13% Similarity=0.070 Sum_probs=227.5 Q ss_pred CCCcc-cCc--H-HHHHHHHhccChHHHHHHHHHHHHHhh--HHHHHHHHHHhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIY-ISE--T-DLIKVQLKKESTINLVKVIEHYILKHR--PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~-~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |-+-- +|. + +.++..+. ..+...+..-+..+. +.......+||.|+|-... .... .....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~~~-~~~~------l~~~g~-- 67 (714) T protein:vir:27 1 MKNETNTMATKNDNGATPRFS----QRQLQALCSDIDSQPKWRDAANKACAYYDGDQLPPE-VLQV------LKDRGQ-- 67 (714) T ss_pred CCcccccccCCCCcchhHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHH-HHHH------HHhcCC-- Confidence 22211 000 0 01111111 112222222222222 2234567889999873211 1111 111122 Q ss_pred ceeecchHHHHHHHHHhhhhccCeee--cC---Cch--hH----HHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEe Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVF--NA---DDD--NL----TKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYI 142 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~--~~---~~~--~~----~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~ 142 (479) -.+.+|.++.+|+..+++...+.+.+ .+ ++. +. +.+++.+. .++.+.....+..+++++|.+|+.++. T Consensus 68 p~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~ 147 (714) T protein:vir:27 68 PMTIHNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRR 147 (714) T ss_pred CcEEeccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEecc Confidence 24688999999999999998887654 33 211 23 33444444 478999999999999999999999988 Q ss_pred CCC---CceEEEEEccceeEEEEcCCC------CCceEEEEEEEee-ec------------------------------- Q lcl|Aclame:pro 143 NRK---GEFKYVIIPAEEAIPIWDSKR------QRELVAFIRFYYI-ED------------------------------- 181 (479) Q Consensus 143 d~~---~~~~i~~~~p~~~~~~~d~~~------~~~~~~~i~~~~~-~~------------------------------- 181 (479) +.| +.++|..++|.+++ ||+.. ....++ .+.|.. .. T Consensus 148 ~~d~~~~~i~i~~v~p~~v~--~Dp~a~~~D~sDar~~~-~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~ 224 (714) T protein:vir:27 148 NSDPFGPEFKVSTVSRNEVF--WDWLSREADLSDCRWLM-RRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQ 224 (714) T ss_pred ccCCCCCCeEEEecchhhee--eccccccCChhhcccee-eeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccccc Confidence 754 56899999999976 45422 111222 111211 00 Q ss_pred -----------------------ccCceEEEEEEEeCCcEEEEEEcC-Ccccccccc-------------------cccc Q lcl|Aclame:pro 182 -----------------------IDGNKIKRVEYYTENDITYFIERG-NSFIQEFLY-------------------DEYG 218 (479) Q Consensus 182 -----------------------~~~~~~~~~~~y~~~~i~~~~~~~-~~~~~~~~~-------------------~~~~ 218 (479) .+...+..+++|........+... ++....... .... T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~r 304 (714) T protein:vir:27 225 PSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSR 304 (714) T ss_pred ccccccchhhhccccccccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccce Confidence 001223444555433222211111 110000000 0000 Q ss_pred cccccccccccc--ccccccccccceEEecCCC---CC--CchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc Q lcl|Aclame:pro 219 KMTDIQEGHFRI--NNKEQGWGKVPFIPFKNNE---KC--VSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG 291 (479) Q Consensus 219 ~~~~~~~~~~~~--~~~~~~~g~vPvv~~~n~~---~g--~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~ 291 (479) .......+.... .+.|-+.+++|+|++.... .| .|.+..+++.++.+|...|.+...+ .++..++..|... T Consensus 305 v~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~ 382 (714) T protein:vir:27 305 IREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQ 382 (714) T ss_pred EEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCccc Confidence 000011111112 2233344567777765432 22 3678899999999999999988866 4555555555543 Q ss_pred cchhhHHHH-hhcccceecCCCC--------cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc-ccHHHHH Q lcl|Aclame:pro 292 TSLQEFIDN-IRYYKSIKVDGGG--------GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD-KSGVALK 361 (479) Q Consensus 292 ~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~-~Sg~Ai~ 361 (479) ....++... .+.+.++.++.+. .++......-..++...++.....|-.+++..+...|..+| .||+|+. T Consensus 383 ~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~ 462 (714) T protein:vir:27 383 LSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAIS 462 (714) T ss_pred ccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHH Confidence 333333322 3344555554321 12332223334667778888888888888877766666554 6999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCcc-c-----------------------cceee Q lcl|Aclame:pro 362 FLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS----------GNKSY-D-----------------------YKTVQ 407 (479) Q Consensus 362 ~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~----------~~~~~-~-----------------------~~~i~ 407 (479) .+-.............+..+.+++.++++.+.... ++.+. . ..+|. T Consensus 463 ~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~ 542 (714) T protein:vir:27 463 NLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIA 542 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEE Confidence 88777777777777777777777777666544321 11000 0 01222 Q ss_pred EEeCCCCCCCHHHHHHHHHHHhccCChH-------HHHHhCCCCCCHHHHHHHHHHHHH--------------HHHhhhh Q lcl|Aclame:pro 408 ITFNHSMIINEAEKIDMAAKSTGIVSDE-------TIVSNHPWVEDVNDELERLKKQED--------------TQKEYDD 466 (479) Q Consensus 408 i~f~~~~p~d~~e~a~~~~k~~g~is~e-------t~~~~l~~~~d~~~El~~i~~E~~--------------~~~~~~~ 466 (479) |.=.+..|....+.++.++.+.+.++.+ ..++.+++ .+.++-+++|.+-.. +.....+ T Consensus 543 i~~~p~~~t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~-p~~~el~~~ir~~~~~~~~~~~~~~e~q~~~~~~q~ 621 (714) T protein:vir:27 543 LAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDV-PQKQEFVERIRAALGTPKSPDEMTPEEQEVAAQQQA 621 (714) T ss_pred EeeccCchHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCC-CCHHHHHHHHHHHcCCCCCccccchhhHHHHHHHHH Confidence 3333444444555666666665544433 34455443 344444455533100 0000000 Q ss_pred ---cc----CCCCCCCcC----CC Q lcl|Aclame:pro 467 ---LI----PNNQDGVID----ET 479 (479) Q Consensus 467 ---~~----~~~~~~~~d----et 479 (479) .. ..+...... ++ T Consensus 622 ~~~~q~~lq~~~~~a~~~k~eae~ 645 (714) T protein:vir:27 622 LQQQQAELQMREMAGRVAKLEADA 645 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Confidence 00 000000000 00 No 88 >protein:vir:8846 Length: 705 # NCBI annotation: putative portal protein # Family: family:all:1548 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775254;genbank:gi:27476052;genbank:GeneID:2700600 Probab=99.72 E-value=1.6e-15 Score=101.68 Aligned_cols=441 Identities=12% Similarity=0.121 Sum_probs=210.3 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHH-------HHhhHHHHHHHHHHhccCCcccccccccccccccccccccC Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYI-------LKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKV 73 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~ 73 (479) |+-.= ...+.+...+...|...+ .++.........+||.|+..-.. ... T Consensus 1 ~~k~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~y~g~~~~~~---------------~~~ 56 (705) T protein:vir:88 1 MAKRR---------KIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNE---------------RPG 56 (705) T ss_pred CCccc---------ccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCcc---------------cCC Confidence 44330 111233333333333322 22222234556789999852211 112 Q ss_pred cceeecchHHHHHHHHHhhhh----cc--CeeecC---CchhHHHHH----HHH--HhcCHHHHHHHHHHHHHhCCeEEE Q lcl|Aclame:pro 74 NNKAINNYHKLLVDQKVGYSV----GN--PIVFNA---DDDNLTKLL----NDL--LGEEFDDTITELYLNASNKGVEWL 138 (479) Q Consensus 74 ~~ri~~n~~~~iv~~~a~~l~----g~--~~~~~~---~~~~~~~~~----~~~--~~n~~~~~~~~~~~~~~~~G~~~~ 138 (479) ..+++.+.....|+.....|. +. .+++.+ +|....+.+ +.+ ..|+....+..++++++++|.+++ T Consensus 57 ~s~~~~~~v~~~v~~~~~~l~~~~~~~~~~~~~~p~~~~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~dal~~g~gi~ 136 (705) T protein:vir:88 57 KSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVV 136 (705) T ss_pred CCccccHHHHHHHHHHHHHHHHhhcCCCceEEEeeCChhHHHHHHHHHHHHhHHHhhccchhHHHHHHHHHHhhcCCeEE Confidence 345677777878888877664 22 234433 333333333 322 235556667899999999999999 Q ss_pred EEEeCCC------------------------------------------------CceEEEEEccceeEEEEcCCCCCce Q lcl|Aclame:pro 139 HPYINRK------------------------------------------------GEFKYVIIPAEEAIPIWDSKRQREL 170 (479) Q Consensus 139 ~v~~d~~------------------------------------------------~~~~i~~~~p~~~~~~~d~~~~~~~ 170 (479) .||++.. |++++..|+|.++++-.+....... T Consensus 137 kv~we~~~~~~~e~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~V~p~d~~~dp~a~~~~d~ 216 (705) T protein:vir:88 137 KVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDA 216 (705) T ss_pred EeccccccchhhhhhccCChhhhhhhhhhhhhhcccccccccceeeeEEeeeeecCceeeeeccHHHceecCCCCCcccC Confidence 9988432 5678889999998753222111222 Q ss_pred EEEEEEEeee--cc-----cCce---EEE--------------------------EEEEeCCc---EEE---EE---EcC Q lcl|Aclame:pro 171 VAFIRFYYIE--DI-----DGNK---IKR--------------------------VEYYTEND---ITY---FI---ERG 205 (479) Q Consensus 171 ~~~i~~~~~~--~~-----~~~~---~~~--------------------------~~~y~~~~---i~~---~~---~~~ 205 (479) .+.++.+... +. +... ... ...++... +.. |. ..+ T Consensus 217 ~~~~~~~~~t~~dl~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~~~~~~~~~~~~~~~~r~v~~~E~y~~~d~~~ 296 (705) T protein:vir:88 217 RFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDG 296 (705) T ss_pred cEEEEEEeccHHHHHhhcCChhHhhhhhcccccchhhhhhhccccccccccccccccccccCCceeEEEEEeeeEecccC Confidence 2222211111 10 0000 000 00000000 000 00 000 Q ss_pred CccccccccccccccccccccccccccccccccccceEEe-----cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 206 NSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPF-----KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQ 280 (479) Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~-----~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~ 280 (479) .+..... .....+..... .-++|.+||+.+ +.+.+|.|.++.+.++++.+|...+.+.+.+...+ T Consensus 297 d~~~~~~--------~~~~~g~~il~--~~~~~~~PF~~~~~~p~~~~~~G~g~~~~~~d~Q~~~n~~~~~~~d~~~~~~ 366 (705) T protein:vir:88 297 DGISELR--------RILYVGDYIIS--NEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTN 366 (705) T ss_pred CcceeeE--------EEEEeCccccc--cccCCCCCEEEecceeecCccccCChHHHHhHHHHHHHHHHHHHHHHHHhcc Confidence 0000000 00000111111 124566677654 45667999999999999999999999999999999 Q ss_pred cceeeeecCCccchhhHHHHhhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-----ccc Q lcl|Aclame:pro 281 EVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-----GDK 355 (479) Q Consensus 281 ~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-----g~~ 355 (479) +|.+.+..... ..++ .-....+.++.....+.+.++..+.-.......++.+...+...++.++...|.. ++. T Consensus 367 ~~~~~~~~g~v-~~~d-~~~~~pg~vv~~~~~~~i~~~~~~~~~~~~~~ll~~~~~~~~~~tGi~~~~~G~~~~~~~~~~ 444 (705) T protein:vir:88 367 QGRSVVLDGQV-NLED-LLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQ 444 (705) T ss_pred CCceecccccc-Cccc-ccccCCCeeEEecCCCccccccCCcCcHHHHHHHHHHHHHHHHhhCCchHHcCCCcccccchh Confidence 98766532211 1112 2234566677777667777776665556677788999999999999998776522 356 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCc-----------c------ccceeeEEeCCCCCCC Q lcl|Aclame:pro 356 SGVALKFLYSLLDLKCSKTEKKFKK-AIRELLWFVCEYLKISGNKS-----------Y------DYKTVQITFNHSMIIN 417 (479) Q Consensus 356 Sg~Ai~~~~~~l~~k~~~~~~~~~~-~l~~~~~li~~~~~~~~~~~-----------~------~~~~i~i~f~~~~p~d 417 (479) |+.|+...............+.|.+ ++++++++++.++....... . ...++.+.-... ..+ T Consensus 445 Ta~~i~~~~~~~~~r~~~~~r~~a~~~~~~l~~~~~~li~~~~~~~~~~ri~g~~v~v~~~~~~~~~~v~v~v~~~-~~~ 523 (705) T protein:vir:88 445 AAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIG-NMN 523 (705) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeccchhccchHhhccCCceEEeeccc-cch Confidence 8888888888888888888888854 56666666666554432111 0 011222222111 112 Q ss_pred HHHHHHHHHHH----hc---------cCChHHH-------HHhCCCCCCHHH------HHHHHHHHHH-------HHHhh Q lcl|Aclame:pro 418 EAEKIDMAAKS----TG---------IVSDETI-------VSNHPWVEDVND------ELERLKKQED-------TQKEY 464 (479) Q Consensus 418 ~~e~a~~~~k~----~g---------~is~et~-------~~~l~~~~d~~~------El~~i~~E~~-------~~~~~ 464 (479) ..+....+..+ .. +++.... .+.++ ..++.+ .++....+.+ +.... T Consensus 524 ~eq~~a~l~~ll~~~q~l~~~~~~~~~~~~~~~~~~~~el~e~~~-~k~~~~~~~~~~~~e~~~~~~~~~q~e~~~~~~~ 602 (705) T protein:vir:88 524 KDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAG-YKDPDRFWTNPNSPEALQAKAIREQKEAQPKPED 602 (705) T ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhcChHHHHHHHHHHHHhhh-hhhHHHHhhhhhhHHHHHHHHhhhhhhhhHHHHH Confidence 22221111111 01 1111111 11111 111100 0000000000 00000 Q ss_pred hhccCCCCCCCcCC-C Q lcl|Aclame:pro 465 DDLIPNNQDGVIDE-T 479 (479) Q Consensus 465 ~~~~~~~~~~~~de-t 479 (479) .........-..+. . T Consensus 603 ~~~q~e~~k~q~e~~~ 618 (705) T protein:vir:88 603 IKAQADAQRAQSDALA 618 (705) T ss_pred HHHHHHHHHHHHHHHH Confidence 00000000000000 0 No 89 >protein:vir:104437 Length: 714 # NCBI annotation: putative phage portal protein # Family: family:all:487 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794061;genbank:gi:116222006;genbank:GeneID:4397502 Probab=99.70 E-value=2e-15 Score=101.17 Aligned_cols=457 Identities=14% Similarity=0.071 Sum_probs=228.1 Q ss_pred CCCcccCcHHHH--HHHHhccChHHHHHHHHHHHHHhh--HHHHHHHHHHhccCCcccccccccccccccccccccCcce Q lcl|Aclame:pro 1 MLNIYISETDLI--KVQLKKESTINLVKVIEHYILKHR--PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNK 76 (479) Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~r 76 (479) |.+- ++++... .....+.+...+..+. ..+..+. +....+-.+||.|+|-.. ... .......+ -. T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~r~~a~~d~~fy~G~Qw~~-~~~------~~l~~~g~--p~ 69 (714) T protein:vir:10 1 MKNE-INTTAMKNDHGSTPRFSQRQLLSLC-SDIDSQPLWRDAANKACAYYDGDQLAP-EVI------QVLKDRGQ--PM 69 (714) T ss_pred CCcC-cCcccCCCcchhhhhhhHHHHHHHH-HHHhhhHHHHHHHHHHHHhhcCCCCCH-HHH------HHHHhcCC--Cc Confidence 4331 1111111 0011112222222222 2222222 123456788999987321 111 11111222 24 Q ss_pred eecchHHHHHHHHHhhhhccCeee--cC---Cch--hHHH----HHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCC Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVF--NA---DDD--NLTK----LLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINR 144 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~--~~---~~~--~~~~----~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~ 144 (479) +.+|.++.+|+..+++...+.+.+ .+ +++ +..+ +++.+. .++.+.....+..+++++|.+|+.++.+. T Consensus 70 ~~~N~i~~~v~~v~g~~~~nr~~~~v~pr~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~d~ 149 (714) T protein:vir:10 70 TIHNLIAPTVDGVLGMEAKTRTDLIVMSDDPNDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNS 149 (714) T ss_pred EEeccHHHHHHHHHHHHHhCCcceEEecCCCChhhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcccceEEeeecc Confidence 688999999999999998887654 33 111 2233 344443 47899999999999999999999998876 Q ss_pred C---CceEEEEEccceeEEEEcCCCC------CceEEEEEEEee------------------------------------ Q lcl|Aclame:pro 145 K---GEFKYVIIPAEEAIPIWDSKRQ------RELVAFIRFYYI------------------------------------ 179 (479) Q Consensus 145 ~---~~~~i~~~~p~~~~~~~d~~~~------~~~~~~i~~~~~------------------------------------ 179 (479) + +.++|..++|.+++. |+... ...++..++... T Consensus 150 d~~~~~i~i~~v~p~~v~~--Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fp~~a~~i~~~~~~~~~~~~~~~~~~~~~~ 227 (714) T protein:vir:10 150 EPFGPEFKVSTVSRNEVFW--DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSP 227 (714) T ss_pred CCCCCCeEEEecChhheee--ccccccCChhhhhhhhhhccCCHHHHHHhcCCchhhhhccchhhcCcccchhhhhhccc Confidence 5 679999999999774 54221 111111100000 Q ss_pred -------------e-----cccCceEEEEEEEeCCcEEEEEEcCCcccccccccc---------------------cccc Q lcl|Aclame:pro 180 -------------E-----DIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDE---------------------YGKM 220 (479) Q Consensus 180 -------------~-----~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~---------------------~~~~ 220 (479) . ..+.+.+..+++|............... ..+.++. .... T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~rV~v~E~w~k~~~~~~~~~~~~g-~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~ 306 (714) T protein:vir:10 228 LMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNG-RVVAFDKNNLMQAVAVASGRVQVKVGRVSRIR 306 (714) T ss_pred ccccchhhcccccccccccccCcceEEEEEEEEeEEEEEEeecCCCC-CeeeeCccCHHHHHHHHhccceecccceeeEE Confidence 0 0112335566666554333322211100 0000000 0000 Q ss_pred ccccccccc--cccccccccccceEEecCCC---C--CCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccc Q lcl|Aclame:pro 221 TDIQEGHFR--INNKEQGWGKVPFIPFKNNE---K--CVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTS 293 (479) Q Consensus 221 ~~~~~~~~~--~~~~~~~~g~vPvv~~~n~~---~--g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~ 293 (479) .....+... ....|-+.+++|+|++.-.. . ..|.+..+++.++.+|...|.+...+ .+...++..|..... T Consensus 307 ~~~~~g~~~L~~~~~p~p~~~fp~vP~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~gav~~~ 384 (714) T protein:vir:10 307 EAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLS 384 (714) T ss_pred EEEEecchhhhcCCCCCCCCceeeEEecceeeeccCccceehhhhhhHHHHHHHHHHHHHHHH--hCCceeecccccccc Confidence 011111111 22334455667887775432 2 34778899999999999999988876 344445555554433 Q ss_pred hhhHHHH-hhcccceecCCC--------CcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc-ccHHHHHHH Q lcl|Aclame:pro 294 LQEFIDN-IRYYKSIKVDGG--------GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD-KSGVALKFL 363 (479) Q Consensus 294 ~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~-~Sg~Ai~~~ 363 (479) ...+... .+.+.++.++.+ +.++......-..++...++.....|-.+++..+...+..+| .||+|+..+ T Consensus 385 d~~~~e~~~rp~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAI~~r 464 (714) T protein:vir:10 385 DNDLMEQLERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAISNL 464 (714) T ss_pred HHHHHHhccCCCCeEEecccccccCCccccccccCCCCCcHHHHHHHHHHHHHHHHhhCCCHHHcCCCcchhHHHHHHHH Confidence 3333332 233455555322 112322222234567788888888898898877776666554 699999988 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CCccc--c----------------------ceeeEE Q lcl|Aclame:pro 364 YSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG----------NKSYD--Y----------------------KTVQIT 409 (479) Q Consensus 364 ~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~----------~~~~~--~----------------------~~i~i~ 409 (479) ..............+..+.+++.++++.+....- ..+.. . .+|.+. T Consensus 465 ~~qg~~~l~~~~dnl~~~~~~~g~~ll~li~~~~~~~rv~RI~~e~~~~~~~~~~~~n~~~~~~~~~nDi~~~~~dv~i~ 544 (714) T protein:vir:10 465 VEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALA 544 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcccceeEeeccccCCccccccceeeeEEEEEe Confidence 8877777777777777788777777766544311 00000 0 011111 Q ss_pred eCCCCCCCHHHHHHHHHHHhccCCh-------HHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCC---- Q lcl|Aclame:pro 410 FNHSMIINEAEKIDMAAKSTGIVSD-------ETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDE---- 478 (479) Q Consensus 410 f~~~~p~d~~e~a~~~~k~~g~is~-------et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~de---- 478 (479) =.+..+.-..+.++.++.+.+.++. ...++.+.+ .+.++-+++|.+-..... + .....+...+ T Consensus 545 ~~p~~~s~r~~~~~~l~ql~~~~~p~~~~~~~~~~le~~d~-p~~~ei~~~ir~~~~~~~---~--~~~~~~e~q~~q~~ 618 (714) T protein:vir:10 545 PVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDV-PQKQEFVERIRAALGTPK---S--PDEMTPEEQEVAAQ 618 (714) T ss_pred eccCcHHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCC-cCHHHHHHHHHHHcCCCC---C--ccccCcchhHHHHH Confidence 1233333344445555554433332 233444432 333444455532210000 0 0000000000 Q ss_pred ----------------------C Q lcl|Aclame:pro 479 ----------------------T 479 (479) Q Consensus 479 ----------------------t 479 (479) + T Consensus 619 ~~~~~~~q~~l~~~e~~a~~~k~ 641 (714) T protein:vir:10 619 QQALQQQQAELQMREMAGRVAKL 641 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH Confidence 0 No 90 >protein:vir:105619 Length: 772 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164304;genbank:gi:56692922;genbank:GeneID:3197230 Probab=99.70 E-value=1.9e-16 Score=106.80 Aligned_cols=463 Identities=11% Similarity=0.051 Sum_probs=224.8 Q ss_pred CCcccCcHHHHHHHH----hccChHHHHHHHHHHHHHhhH--HHHHHHHHHhccCCcccccccccccccccccccccCcc Q lcl|Aclame:pro 2 LNIYISETDLIKVQL----KKESTINLVKVIEHYILKHRP--EKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNN 75 (479) Q Consensus 2 ~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (479) |.+.++...-.+-.. ...+...+..+. ..++.+.. ....+-.+||.|+|-... .+.. .+.. ..- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~r~~a~~d~~fy~G~QW~~~-~~~~------l~~~--g~p 70 (772) T protein:vir:10 1 MQITENDRQYLNGLPPAGDTPLTVDEYADIN-YEIEDQPAWRAVADKEMDYADGNQLDTE-LLRR------QQAL--GIP 70 (772) T ss_pred CCcchhhHHhhccCCcccccccCHHHHHHHH-HHHhccHHHHHHHHHHHHhhcCCCCCHH-HHHH------HHhc--CCC Confidence 455544433333211 122233333322 22333222 223456779999873211 1111 1112 222 Q ss_pred eeecchHHHHHHHHHhhhhccCeee--cCC----chhHH----HHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCC Q lcl|Aclame:pro 76 KAINNYHKLLVDQKVGYSVGNPIVF--NAD----DDNLT----KLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINR 144 (479) Q Consensus 76 ri~~n~~~~iv~~~a~~l~g~~~~~--~~~----~~~~~----~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~ 144 (479) .+.+|.++.+|+..+++...+.+.+ .+. +.+.. .+++.+. .++++.....+..+++++|.+|+.++.+. T Consensus 71 ~~~~N~i~~~v~~v~g~~~~nr~d~~v~Pr~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~Gw~e~~~~~ 150 (772) T protein:vir:10 71 PAVEDLIGPALLSLQGYEAVTRTDWRVTPNGDVGGQEVADALNYRLNTAERQSGADRACSEAFRPQIACGIGWVEVSRES 150 (772) T ss_pred cEEEcchHHHHHHHHHHHHhcCcceEEecCCCchHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhhcCceeEEecccc Confidence 4788999999999999998887654 332 22323 3344443 47899999999999999999999998876 Q ss_pred C---CceEEEEEccceeEEEEcCCCCCce---EEEE-EEEee-------------------------------------- Q lcl|Aclame:pro 145 K---GEFKYVIIPAEEAIPIWDSKRQREL---VAFI-RFYYI-------------------------------------- 179 (479) Q Consensus 145 ~---~~~~i~~~~p~~~~~~~d~~~~~~~---~~~i-~~~~~-------------------------------------- 179 (479) + +.++|..++|.+++ ||+...... .+++ ..|-. T Consensus 151 d~~~~~i~i~~v~p~~v~--~Dp~a~~D~sDar~~~~~~~~~~d~~~~~fp~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (772) T protein:vir:10 151 DPFKFPYRCRPIRRDEIH--WDMKCGDDWEACRFLRRQRWLSPDRIALVFPEHAELIGMVGKYGSTWWGQPDLGMMEGGT 228 (772) T ss_pred CCCCCCeEEEeeCcccce--ecCCCCCCHHHhhhhhhhccCCHHHHHHhCCCchhHHHhhhhhcccccCccccccccccc Confidence 5 46789999999966 566432111 1111 00000 Q ss_pred ---------------------ecccCceEEEEEEEeCCcEEEEEEcCCccc-ccccc-------------------cccc Q lcl|Aclame:pro 180 ---------------------EDIDGNKIKRVEYYTENDITYFIERGNSFI-QEFLY-------------------DEYG 218 (479) Q Consensus 180 ---------------------~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~-~~~~~-------------------~~~~ 218 (479) .+.+.+.+..+++|......+.+....... ..... .... T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rVrv~E~w~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~~~~~~~~~r 308 (772) T protein:vir:10 229 STGLHNAWNEARAWTVQEDHWYNPTSKEICLVELWYRRWVQVHVLKSPDGRVVEYDPNNLAHNIALASGRISPKKVTVSR 308 (772) T ss_pred ccccccccchhhccccccccccccCCceEEEEEEeeeeeeeeeeeccCCCceEeeCcccHHHHHHHhhcccchheeeeeE Confidence 000113355566655443332222111100 00000 0000 Q ss_pred cccccccccccc--ccccccccccceEEecCCC-----CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc Q lcl|Aclame:pro 219 KMTDIQEGHFRI--NNKEQGWGKVPFIPFKNNE-----KCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG 291 (479) Q Consensus 219 ~~~~~~~~~~~~--~~~~~~~g~vPvv~~~n~~-----~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~ 291 (479) .......+.... ...|-+.+.+|+|++.-.. ...|.+..+++.++.+|...|.+...+...+ ...-.|... T Consensus 309 v~~~~~~g~~~L~~~~~p~~~~~fP~vP~~g~r~~~~g~~~G~vr~~kd~Qr~~N~~~S~~~~~l~~~~--~~~~~gav~ 386 (772) T protein:vir:10 309 VRRSYWLGPHCLHDGPTPYTHRHFPYVPFFGFREDATGIPYGYVRGMKYAQDSLNSGVSKLRWGMSVAR--VERTKGAVA 386 (772) T ss_pred EEEEEEecceeeccCCCCCCCCccceEEEeeeEeccCCcccchhhhhhhHHHHHHHHHHHHHHHHhccc--ccccCCCcc Confidence 000111122222 3344455678888775321 2347888999999999999999988776544 223333322 Q ss_pred cchhhHHHHh-hcccceecCCCC----c--ceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc-ccHHHHHHH Q lcl|Aclame:pro 292 TSLQEFIDNI-RYYKSIKVDGGG----G--VDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD-KSGVALKFL 363 (479) Q Consensus 292 ~~~~~~~~~~-~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~-~Sg~Ai~~~ 363 (479) ...+++.... +.+.++.++.+. + ++......-..++...++.....|-.+++..+...+..+| .||+|+..+ T Consensus 387 ~~d~~~~e~~arp~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGv~~~~lG~~~na~SGvAi~~r 466 (772) T protein:vir:10 387 MTDAQFRRQIARPDADIVLDENHMAKPGARFDVKRDYTLTDQHFQMLQDNRATIERVSNITAGFQGRKGTATSGIQEQQQ 466 (772) T ss_pred chhHHHHHhccCCCCeEEeCCccccCCCCCccccCCccccHHHHHHHHHHHHHHHHHhCCCHHHcCCCcchhhHHHHHHH Confidence 2222333333 334455555432 2 2333333334667778888888888888877766666555 699999988 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CCcc---c------------------cce------- Q lcl|Aclame:pro 364 YSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG----------NKSY---D------------------YKT------- 405 (479) Q Consensus 364 ~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~----------~~~~---~------------------~~~------- 405 (479) -.............+..+.+++.++++.+....- +... . ..+ T Consensus 467 q~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~y~~er~~RI~~~d~~~~~~~v~in~~~~d~~tg~~~~~NDi~~g~yD 546 (772) T protein:vir:10 467 IEQSNQSIGRIMDNFRAGRTLVGELLLAMIVEDIGQERTEVVIEGDAVTADRVVVLNEPQRDPQTGAAYLSNDLLRTRIK 546 (772) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCCCCceEEeccceecccccccceeccceeeeEE Confidence 7777777777777777777777666665544311 1000 0 001 Q ss_pred eeEEeCCCCCCCHHHHHHHHHHHhccCChHHH-------HHhCCCCCCHHHHHHHHHHHHH-----------------HH Q lcl|Aclame:pro 406 VQITFNHSMIINEAEKIDMAAKSTGIVSDETI-------VSNHPWVEDVNDELERLKKQED-----------------TQ 461 (479) Q Consensus 406 i~i~f~~~~p~d~~e~a~~~~k~~g~is~et~-------~~~l~~~~d~~~El~~i~~E~~-----------------~~ 461 (479) |.|.=.+..+.=..+.++.+..+.+.++.+.. ++.+. +...++-.++|++-.. +. T Consensus 547 v~i~~~p~~~t~r~~~~~~m~ql~~~~~P~~~~~~~~~~le~~D-~p~~~ei~~~ir~~~~~~~peq~~~~~~q~~qq~~ 625 (772) T protein:vir:10 547 VALEDVPSTNSYRGQQLNAMSEAVKSMPPQYQAAVLPFLVSLMD-VPFKRDVVEAIRAVDQQQTPEQIQQQIDQAVQDAL 625 (772) T ss_pred EEeeccccchHHHHHHHHHHHHHHhccChhHHHHHHHHHHhhcC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHHHHH Confidence 11111111111123344444444443444322 12221 1112222222222100 00 Q ss_pred Hhhhhcc-C--CCCCCCcCCC Q lcl|Aclame:pro 462 KEYDDLI-P--NNQDGVIDET 479 (479) Q Consensus 462 ~~~~~~~-~--~~~~~~~det 479 (479) ....... . ....-...+. T Consensus 626 ~~~~~el~~~q~~a~~~~~~A 646 (772) T protein:vir:10 626 AKAGNDIKLRELEIKERKADS 646 (772) T ss_pred HHHHHHHHHHHHHHHHHHHHH Confidence 0000000 0 0000000000 No 91 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.68 E-value=1.9e-16 Score=106.80 Aligned_cols=413 Identities=12% Similarity=0.049 Sum_probs=204.7 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCC-ccccccccccc---ccccccccccCcce Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNT-DVNNKRRYYLL---DGAKVDDFTKVNNK 76 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~-~~~~~~~~~~~---~~~~~~~~~~~~~r 76 (479) |.++=....-.+... ...+...+..+=.|.. +......+... .........+ T Consensus 1 ~~~~~~a~~~~~~~~--------------------a~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~l~~lY~---- 56 (461) T protein:vir:80 1 MYSIDKAKQAKIDSK--------------------IVNRNDFMVGHGKANSRDKLTRQTPGNGQKLDLKACENLYA---- 56 (461) T ss_pred Cccchhhhhhhhhhh--------------------hhhhhHHHhhcCCcchhhhhhccccCcccccCHHHHHHHHH---- Confidence 333222211111100 0000000000000110 00000000000 0000000111 Q ss_pred eecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCc---eEEEE Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGE---FKYVI 152 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~---~~i~~ 152 (479) ...+++.+|+.+++.++.+++.+++++++..+.++.++ +-++...+.++++.+..||.+++++...+... ..... T Consensus 57 -~~~l~r~iVd~~a~d~~r~g~~i~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~p 135 (461) T protein:vir:80 57 -SNSIAMNIVDIISEDMVRAGWSLKTDNKEMKKNIESKWRKLKTKDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTA 135 (461) T ss_pred -hCCccchhhccchHHhhcCCeeeecCCHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccEEEEEEeecCCccccCccCC Confidence 34778999999999999999999998877766665544 45788889999999999999998886532211 11111 Q ss_pred Ecccee--E---EEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccc Q lcl|Aclame:pro 153 IPAEEA--I---PIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGH 227 (479) Q Consensus 153 ~~p~~~--~---~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (479) +.|... + .+|+.. .+.. . ....+..+..+ +.+ ..|...+........ . . T Consensus 136 l~~~~~~~~~~l~~~~~~---~i~~-~--~~~~dp~sp~f-----g~P---~~y~i~~~~~~~~~~---------~---~ 189 (461) T protein:vir:80 136 IDPKTIKSIPYINTFNTQ---KVTQ-L--YLNQDMFSEHF-----GEV---EFFEVNRVSQLGEEI---------L---S 189 (461) T ss_pred cccccccceeEEEecccc---ccch-h--hhcccCcCccc-----ccc---eEEEEeccccccccc---------c---c Confidence 112110 0 001100 0000 0 00001011111 111 111111100000000 0 0 Q ss_pred cccccccccccccceEEecC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccc---hhhHHH Q lcl|Aclame:pro 228 FRINNKEQGWGKVPFIPFKN-----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTS---LQEFID 299 (479) Q Consensus 228 ~~~~~~~~~~g~vPvv~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~---~~~~~~ 299 (479) .........+..-++++|.+ ..+|+|.++.+.+.+.+++.+.-.....+.....+.+...+..... ...... T Consensus 190 ~~~~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~~~~~~~~~~~ 269 (461) T protein:vir:80 190 GTTASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLYDIITVMDTSLWSVGQILYDFAFKVYKTDDIDALNKDDKANLTA 269 (461) T ss_pred cccCccceEEccccEEEecCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecchHHhhhchHHHHHHH Confidence 00000011122234555544 2359999999999999999998888888877777776665432111 111111 Q ss_pred ---Hhh-cccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccc---cccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 300 ---NIR-YYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQN---TGDKSGVALKFLYSLLDLKCS 372 (479) Q Consensus 300 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~---~g~~Sg~Ai~~~~~~l~~k~~ 372 (479) ... ...++.++++.+.+. .+.+..++...++.+...|...+.+|-.-..+ .+++||+.= .......+. T Consensus 270 ~~~~~~~~~g~~~~d~~e~~e~--~~~~lsgl~~~l~~~~~~iaa~s~iP~t~L~G~s~g~~asge~D---~~~yyd~i~ 344 (461) T protein:vir:80 270 MLDFMFRTEALAIIKGDEQLTK--ESTNVSGMKDLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQYD---VMNYYARVS 344 (461) T ss_pred HHHHhcCCceEEEEcCCcceEE--EecCcCCHHHHHHHHHHHHhhhhcCCeeeeecccCCccccchHH---HHHHHHHHH Confidence 111 223344555555444 44556678889999999999999988654332 345666652 223445566 Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhc-CCCccccceeeEEeCCCCCCCHHHHHHHHHHH---------hccCChHHHHHhC Q lcl|Aclame:pro 373 KTE-KKFKKAIRELLWFVCEYLKIS-GNKSYDYKTVQITFNHSMIINEAEKIDMAAKS---------TGIVSDETIVSNH 441 (479) Q Consensus 373 ~~~-~~~~~~l~~~~~li~~~~~~~-~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~---------~g~is~et~~~~l 441 (479) .++ ..++..+++++++++.-.... ...+++..++++.|++..+.+..|.|+...+. +|++|.+++.+.+ T Consensus 345 ~~qe~~l~p~le~l~~~i~~s~~~~~~~~~p~~~~~~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l 424 (461) T protein:vir:80 345 SIQENRLRPQLEYLTRLLMWASDDCGPSIDPDSFEWAIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNGVLDPDEVKETR 424 (461) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH Confidence 555 568899999999887643332 23455667899999999999999998865442 4789988876533 Q ss_pred ----CCCCC-----HHHHHHHHHHHHHHHHhhhhccCCCCCCCc Q lcl|Aclame:pro 442 ----PWVED-----VNDELERLKKQEDTQKEYDDLIPNNQDGVI 476 (479) Q Consensus 442 ----~~~~d-----~~~El~~i~~E~~~~~~~~~~~~~~~~~~~ 476 (479) +..++ ...|++.+.++ ....+.++++.+ T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~e~~~g 461 (461) T protein:vir:80 425 FGRFGLENSSKFSGDSAEIDKLAKL-------VYDAYAKKNADG 461 (461) T ss_pred HHhcCCCCCccCCCCCchhhhhhhh-------ccccccccCCCC Confidence 11111 11222222211 111111222222 No 92 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=99.66 E-value=1.7e-14 Score=96.08 Aligned_cols=447 Identities=11% Similarity=0.048 Sum_probs=218.6 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhH--HHH----------HHHHHHhccCCccccccccccccccccc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRP--EKY----------KQGEEYYYGNTDVNNKRRYYLLDGAKVD 68 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~----------~~~~~yy~g~~~~~~~~~~~~~~~~~~~ 68 (479) |..+.+..+-....+..+. ...+.+.++++.+.... ++. ..+.+||.|...-.. . . T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~~~~~~y~~~~~~~~~---------~--~ 70 (651) T protein:vir:80 3 LATTTTDKNRQTYDETHDV-SSYVKKEYKRFCDARQVCEETWLEAWGMYLSTPEAQDYLRDQVLRSV---------G--D 70 (651) T ss_pred ccccccchhhhhhhhhHHH-HHHHHHHHHHHHHHhhhhhhhHHHHHHhhcccHHHHHhhcccccccc---------C--C Confidence 6666555543332222221 22244444433332111 112 234566666431110 0 0 Q ss_pred ccccCcceeecchHHHHHHHHHhhhhcc----C--eeecC-Cch----hHHHHHHHHH-----hcCHHHHHHHHHHHHHh Q lcl|Aclame:pro 69 DFTKVNNKAINNYHKLLVDQKVGYSVGN----P--IVFNA-DDD----NLTKLLNDLL-----GEEFDDTITELYLNASN 132 (479) Q Consensus 69 ~~~~~~~ri~~n~~~~iv~~~a~~l~g~----~--~~~~~-~~~----~~~~~~~~~~-----~n~~~~~~~~~~~~~~~ 132 (479) +...-.+++..|.....|+.....|+.. + +.+.. ++. ...++++.+. .++|......+..++++ T Consensus 71 ~~~~~rs~~~~~~v~~~ve~~~~~l~~~~~~~~~~~~~~p~~~~d~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~l~ 150 (651) T protein:vir:80 71 VNADWRHKITTGKAFEAIETIHAYLMSATFPNKNWFDVVPAKPGQDNLLVSRLIKRYVQDKLTEGKFRAAYANFLRQLLI 150 (651) T ss_pred CCCCCCccccChhHHHHHHHHHHHHHHhhcCCCceeEeccCCchhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhcc Confidence 1111224678899999998887777542 1 22222 121 2233344332 45788888899999999 Q ss_pred CCeEEEEEEeCC-------------------------------CCceEEEEEccceeEEEEcCCCCC--ceEEEEEEEee Q lcl|Aclame:pro 133 KGVEWLHPYINR-------------------------------KGEFKYVIIPAEEAIPIWDSKRQR--ELVAFIRFYYI 179 (479) Q Consensus 133 ~G~~~~~v~~d~-------------------------------~~~~~i~~~~p~~~~~~~d~~~~~--~~~~~i~~~~~ 179 (479) +|.+++.|+++. .|.|++..++|.++++ |++... ...++++.+.. T Consensus 151 ~G~~i~kv~we~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~v~p~~~~~--dp~a~~~~d~~~v~~~~~t 228 (651) T protein:vir:80 151 TGNSVLALPWRVETAEVKKKVQVRTPLFEDEPTFEVVSEEREVKSSPDFEVLDMFDCFY--DPNVTDPNRGAFIRKLTKT 228 (651) T ss_pred cCceEEEEeecceeeeeehheeccccccccccceeeeccceeeeceeEEEEecHHHeee--cCCCcCccccceeeeeeee Confidence 999999998753 1568899999999886 554321 12222232221 Q ss_pred ecc------cC----------------------------------------ceEEEEEEEeCCcEEEEEEcCCccccccc Q lcl|Aclame:pro 180 EDI------DG----------------------------------------NKIKRVEYYTENDITYFIERGNSFIQEFL 213 (479) Q Consensus 180 ~~~------~~----------------------------------------~~~~~~~~y~~~~i~~~~~~~~~~~~~~~ 213 (479) ... +| ..+..+++|. ++..++.+... T Consensus 229 ~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~v~E~~~-----~~d~e~~~~~~--- 300 (651) T protein:vir:80 229 KADILNLLSEGYYYGVDPLDVVEHKCKDTSDTKQDMLSTFQGVTTSLWSPHQNVELLEYWG-----DIHLENKTYHD--- 300 (651) T ss_pred HHHHHHHHhcccccchhhHHHHhhhccccccCCccccccccCCCccccccccceEEEEEEE-----EeeccCCceEE--- Confidence 100 00 0111122221 11111111100 Q ss_pred cccccccccccccccccccccccc-cccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeee Q lcl|Aclame:pro 214 YDEYGKMTDIQEGHFRINNKEQGW-GKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLK 287 (479) Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~-g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~ 287 (479) ......+........+++ ..+|++.+. ...+|+|.++.+.+.+..+|.+...+.+.+...+.|.+.+. T Consensus 301 ------~~v~~~g~~il~~~~~~~~~~~Pf~~~~~~~~~~~~yG~g~~~~~~~~q~~ln~l~~~~ld~~~~~~~~~~~v~ 374 (651) T protein:vir:80 301 ------VVVTIMGNEVLRFEQNPYWCGRPFVIGTYIPTARQPYAMGALQPNLGMLHELNIITNQRLDNLELAIDQMYTLR 374 (651) T ss_pred ------EEEEEcCcEEecccccCCCCCCCeeeecceecCccccCCChHHHHhHHHHHHHHHHHHHHHHHHHHhCCcEEec Confidence 000001111111112221 234665543 35679999999999999999999999999999999997765 Q ss_pred cCCccchhhHHHHhhcccceecCCCCcceeeecCC-CHHHHHHHHHHHHHHHHHHhCCCCCcccc----cccccHHHHHH Q lcl|Aclame:pro 288 EYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEINI-PVEAKKELLDRLEKNIIIFGQGVNPESQN----TGDKSGVALKF 362 (479) Q Consensus 288 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~s~~~~~~~~~----~g~~Sg~Ai~~ 362 (479) ..+....++. ....++++.....+++.++.... +.......++.+...+...++.+.+..+. .++.||+++.. T Consensus 375 ~d~~~~~~~l--~~~pg~vi~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~gv~~~~~g~~~~~~~~~TAteI~~ 452 (651) T protein:vir:80 375 SDGLLQPEDV--YTEPGKVFLVSDHGDLQPLANQSSNFSITYQESSFLESTIDKNFGTGNYVGANAARSGERVTAAEVAA 452 (651) T ss_pred CCccccHHHh--hcCCCceEEecCCCCceeeccCcccchhHHHHHHHHHHHHHHHhcCChHHhCCCccchhhccHHHHHH Confidence 3322222222 24567778788888888887643 44556678888988888888887765543 34568888888 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCc-----------------cccceeeEEeC--CCCCCCHHHHH Q lcl|Aclame:pro 363 LYSLLDLKCSKTEKKFKK-AIRELLWFVCEYLKISGNKS-----------------YDYKTVQITFN--HSMIINEAEKI 422 (479) Q Consensus 363 ~~~~l~~k~~~~~~~~~~-~l~~~~~li~~~~~~~~~~~-----------------~~~~~i~i~f~--~~~p~d~~e~a 422 (479) ....+........+.|.. +++.+++.++.++...+..+ ....++++.+. ..-+....+.. T Consensus 453 ~~~~~~~~l~~v~~~l~~e~l~pl~~r~l~l~~~~~~~~~~~ri~~~~~~~~~~~~i~~~dl~~~~~iv~~g~~~~~~r~ 532 (651) T protein:vir:80 453 VREAGGNRLSGIHKHIEETSLLVLLEKVMHLVQQFTDQPGMVRVAGDEAGAYEYYELDVEDLQKEVRLVPIGSDHVIERK 532 (651) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccceeecccccccccccccCccceeeeeeeeeccHHHHHHHH Confidence 877777777777777765 55656655555544322110 00112333222 11111122222 Q ss_pred HHHHHH------hccCC---h-----H---HHHHhCCCCCCHHH--------------HHHHHHHHHHHHHhhhhccCCC Q lcl|Aclame:pro 423 DMAAKS------TGIVS---D-----E---TIVSNHPWVEDVND--------------ELERLKKQEDTQKEYDDLIPNN 471 (479) Q Consensus 423 ~~~~k~------~g~is---~-----e---t~~~~l~~~~d~~~--------------El~~i~~E~~~~~~~~~~~~~~ 471 (479) ..+.++ .+..+ . . ..++.+|. .++.. +....+.+.. ...+...+... T Consensus 533 ~~~~~l~~~~q~~~~~p~~~~~~~~~~~~~~l~~~~g~-~~~~~~l~~~~q~~~~~~~~~~~~q~~~~-~~~a~~~~~~~ 610 (651) T protein:vir:80 533 QYIEDRLTFIQAVAQVPEMGQLVDYKRILVDLLQHWGF-EEPEAYLKQQDQQAPANPQEALLSQAKDV-GGQAMSNMLQN 610 (651) T ss_pred HHHHHHHHHHHhhccCCccchhhhHHHHHHHHHHHcCC-CCcHHhcCCCccchhhhhhHHHHhhHHHH-HHHHHHHHHHH Confidence 222221 11111 1 1 12233442 22221 0000001000 00011111101 Q ss_pred CCCCcCCC Q lcl|Aclame:pro 472 QDGVIDET 479 (479) Q Consensus 472 ~~~~~det 479 (479) +-+...++ T Consensus 611 ~~~~~~~~ 618 (651) T protein:vir:80 611 QLQADGGT 618 (651) T ss_pred HHHHHHHH Confidence 11111222 No 93 >protein:vir:95449 Length: 584 # NCBI annotation: hypothetical protein ORF047 # Family: family:all:1548 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294640;genbank:gi:149408206;genbank:GeneID:5237016 Probab=99.62 E-value=9.9e-15 Score=97.36 Aligned_cols=452 Identities=13% Similarity=0.098 Sum_probs=233.1 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhh--HHHHHHHHHHhccCCcccccccccccccccccccccCcceee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHR--PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 78 (479) |++.-..-...+. .--....+...........+ ..+.+.+++||.+-..-.. ... +.. ..+++- T Consensus 1 ~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~r~~~~~~w~el~~y~~a~~~~~~-----~~~----~~~--~r~~~~ 66 (584) T protein:vir:95 1 MSVKVAELNSLLV---RDSSAQWVAYLWDRFNNQRRQKIEEWKELRNYVFATDTTTT-----SNQ----GLP--WKNSTT 66 (584) T ss_pred CCcchhhhhhhcc---ccchHHHHHHHHHHHHhhhchhhccCHHHHHHHHhhhhhhh-----hhc----ccc--cccccc Confidence 3332222121111 11223344444443322211 2234778888887432111 000 111 124677 Q ss_pred cchHHHHHHHHHhhhhccC------eee---cCCc--hhHHHHHHHH-----HhcCHHHHHHHHHHHHHhCCeEEEEEEe Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGNP------IVF---NADD--DNLTKLLNDL-----LGEEFDDTITELYLNASNKGVEWLHPYI 142 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~~------~~~---~~~~--~~~~~~~~~~-----~~n~~~~~~~~~~~~~~~~G~~~~~v~~ 142 (479) +|.+...++.+..+++.-= +.+ ..++ ....++++.+ ...++...+..+++++.++|.|+..+.+ T Consensus 67 ~~k~~~~~~~i~~~l~~~~Fp~~~w~~~v~~~~~~~~~~~~~ai~~~i~dkl~e~~~~~~~~~~i~d~~~~G~~~~k~~~ 146 (584) T protein:vir:95 67 LPKLCQIRDNLHSNYFSSLFPNDDWLRWVGYGKGDSTKTKAKAIQAYMSNKCRESHFRTEVSKLIYDYIDYGNAFATVSF 146 (584) T ss_pred hhHHHHHHHHHHHHHHHhhcCccceeeeecCCCchhhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhhccCCceEEEEeE Confidence 8888888888877774331 111 1122 2224555544 3358899999999999999999999987 Q ss_pred CCC-------------CceEEEEEccceeEEEEcCCCC--CceEEEEEEEee---------------------------- Q lcl|Aclame:pro 143 NRK-------------GEFKYVIIPAEEAIPIWDSKRQ--RELVAFIRFYYI---------------------------- 179 (479) Q Consensus 143 d~~-------------~~~~i~~~~p~~~~~~~d~~~~--~~~~~~i~~~~~---------------------------- 179 (479) ... .++++..++|.+++ ||++.. ....+.+|.+.+ T Consensus 147 ~~~~~e~~e~~~v~~~~~prieriSP~d~~--~Dpsa~~i~d~~fivrs~~T~~~L~~l~~~~~~~~y~~d~v~~~~~~~ 224 (584) T protein:vir:95 147 EAKYKEMTDGTLVPDYIGPRLVRISPLDIV--FNPLATSISDTFKIVRSVKTKGELMRLAQDEPEQSYWLEALKRREEIC 224 (584) T ss_pred eecceeeeccccccccccceEEeeChhhee--ecCCCCCccchhhhhhhhhhHHHHHHHHhhcCccccchHHHHHHHHhc Confidence 543 26899999999888 576652 112222222211 Q ss_pred --------ecccCc-------eEEEEEEEeCCcEEEEEEcCCccc-cccccccccccccccccc-cccccccccccccce Q lcl|Aclame:pro 180 --------EDIDGN-------KIKRVEYYTENDITYFIERGNSFI-QEFLYDEYGKMTDIQEGH-FRINNKEQGWGKVPF 242 (479) Q Consensus 180 --------~~~~~~-------~~~~~~~y~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~vPv 242 (479) .+.++- .....+.|.++.+.-+..-+.-+. .............+..+. ......+.++|.+|+ T Consensus 225 ~~~~~~~~~~~~~~~~~~~d~~~~~~ey~~~~~V~vl~~~g~~~~~~~~e~~~~~iv~v~~g~~iIR~~~np~~~~~~PF 304 (584) T protein:vir:95 225 RHLGGYSVEDFDKAAGFDVDGFGNLYEYYMSDWVEILEFYGDYHDKETGELQTNRIITVVDRSTEVRNESIPTWFGSAPI 304 (584) T ss_pred cCCCCCcccccccccccccccccccccccCCceeEEEeecccccccccCCCcccceEEEEeccEEEEeeecCCCCCCCCE Confidence 000000 001122222222222111110000 000000000111111111 112355677899999 Q ss_pred EEecC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCccee Q lcl|Aclame:pro 243 IPFKN-----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDK 317 (479) Q Consensus 243 v~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (479) +...- +-+|.|..+-+.++++.+|.+.-.+.+.+..+..|.+...+... + ...+.+..+.....+++++ T Consensus 305 ~~~~~~p~~~s~yG~gi~~ll~d~Q~~lna~~r~~iDnl~l~~~pv~k~~~~~~----~--~~~~pg~~~~~~~~~~~q~ 378 (584) T protein:vir:95 305 YHVGWRFRPDNLWAMGPLDNLVGMQYRIDHLENAKADAVDLIIQPPLKIIGEVE----E--FVWGPGAEIHLDQGGDVQE 378 (584) T ss_pred EEEcceeeeccccCCCchhhhhhHHHHHhHHHHHHHHHHHHhcCcceeeccccc----h--hcccCCceeecCCCCCcce Confidence 87653 45799999999999999999999999999999999766554321 1 2345677888888889999 Q ss_pred eecCC-CHHHHHHHHHHHHHHHHHHhCCCCCcccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH Q lcl|Aclame:pro 318 LEINI-PVEAKKELLDRLEKNIIIFGQGVNPESQN--TGDKSGVALKFLYSLLDLKCSKTEKKFKKAI-RELLWFVCEYL 393 (479) Q Consensus 318 ~~~~~-~~~~~~~~~~~l~~~i~~~s~~~~~~~~~--~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l-~~~~~li~~~~ 393 (479) +.++. +..+....+..+...+...++.|....|. .++.|+..+.+...++..-...+.+.|..++ ++++.++.++. T Consensus 379 ~~p~a~~~~s~~~~lq~~e~~me~~sGvp~~~~G~~~~~~~TAtg~s~l~naa~~~~r~~~~~f~~~ll~~l~~ll~~~~ 458 (584) T protein:vir:95 379 IAKNVNYIINADNQIQMLEDRMELYAGAPREAMGIRTPGEKTAFEVQQLGNAAGRIFQEKVTTFEVELLEPVLNAMLETA 458 (584) T ss_pred ecCchhhhhHHHHHHHHHHHHHHhhhCCChhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 98874 44555566888888888899999877664 3456777788888888888888888888877 77778877663 Q ss_pred HhcC-CCcc----------------ccceeeEEe--CCCCCCCHHHHHHHHHHHh------------ccCChHHH---H- Q lcl|Aclame:pro 394 KISG-NKSY----------------DYKTVQITF--NHSMIINEAEKIDMAAKST------------GIVSDETI---V- 438 (479) Q Consensus 394 ~~~~-~~~~----------------~~~~i~i~f--~~~~p~d~~e~a~~~~k~~------------g~is~et~---~- 438 (479) .... ..+. .-.+++-.| ......-..+.++..+.+. +.++.... + T Consensus 459 ~~nmd~~~~vr~~n~e~~~~~f~~i~r~Dl~g~~~~va~Ga~~~~~keq~~q~l~~ilq~~~~~~i~p~~~~~~l~~~la 538 (584) T protein:vir:95 459 TRNMDGSDVIRVMDTDLGVKEFMSVTREDITANGKIRPIGARHFGKQAQDLQNLVGIFNSQIGQMILPHTSGKALATFVD 538 (584) T ss_pred HhhccccCceeeeccccccccccccChhhhccCeeEEeehhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHH Confidence 3211 0000 001111111 1111111122233222221 11222221 1 Q ss_pred --HhCCC---CC-C----HHHHHHHHHHHHHHHHhhhhccCCCCCCCc Q lcl|Aclame:pro 439 --SNHPW---VE-D----VNDELERLKKQEDTQKEYDDLIPNNQDGVI 476 (479) Q Consensus 439 --~~l~~---~~-d----~~~El~~i~~E~~~~~~~~~~~~~~~~~~~ 476 (479) .++|. .+ + .+.|.+....+-++......+++. .|.- T Consensus 539 dl~~~p~~~~~~~~~~~~~Q~~~q~~~~~~q~~~~~~~~~~~--~~~~ 584 (584) T protein:vir:95 539 DVTGLQGYEIFRPNVAVAEQAETQSLVAQAQEDLQLQAQMPA--EGAI 584 (584) T ss_pred HHhCCCcccccCCCcccchhHHHHhhhHHHHHHHHHHHhhhh--ccCC Confidence 22332 11 1 222333322222222222222221 1211 No 94 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.60 E-value=4.7e-13 Score=88.16 Aligned_cols=417 Identities=10% Similarity=-0.004 Sum_probs=228.6 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccccccccccccccc---c------cCc-ceee Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDF---T------KVN-NKAI 78 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~---~------~~~-~ri~ 78 (479) |+.|+..+.-.++..-.+.. +.....+-|.|-..-.... ......-.+.. . ++. .-.. T Consensus 1 mn~~dr~i~~~sP~~~~~R~----------~ar~~~~~y~aa~~~r~~~--~~~~~~s~~~~~~~~~~~lr~RaRdl~rN 68 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARL----------RSRAVIQAYEAVKTTRTHK--ARRENRTADQLSQYGAVSLREQARYLDNN 68 (502) T ss_pred CchHhhHHhhcChHHHHHHH----------hhHHHHhhccccCcccccC--CCCCCCChHHHHHHHHHHHHHHHHHHHhc Confidence 55555555544443222221 1112223355432111000 00000000000 0 000 0013 Q ss_pred cchHHHHHHHHHhhhhcc-Ceeec----CCc--------hhHHHHHHHHHh-------cCHHHHHHHHHHHHHhCCeEEE Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGN-PIVFN----ADD--------DNLTKLLNDLLG-------EEFDDTITELYLNASNKGVEWL 138 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~-~~~~~----~~~--------~~~~~~~~~~~~-------n~~~~~~~~~~~~~~~~G~~~~ 138 (479) .+|++.+|+..+..+.|. ++++. ..+ +.+...|+.|-. .+|......+.+..+..|.+|+ T Consensus 69 n~~a~~av~~~~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~ 148 (502) T protein:vir:79 69 HDLVIGVFDKLEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFA 148 (502) T ss_pred ChHHHHHHHHHHHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEE Confidence 589999999999999997 55443 222 223344555543 3688888889999999999999 Q ss_pred EEEeCCCCc--------eEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccc Q lcl|Aclame:pro 139 HPYINRKGE--------FKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQ 210 (479) Q Consensus 139 ~v~~d~~~~--------~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~ 210 (479) ...+++.+. +++..++|+.+-.-+++ ...+..+|++ +..|..+ .+.++..+- +.. T Consensus 149 ~~~~~~~~~~~~g~~~~l~lq~iepd~l~~~~~~--~~~i~~GVe~----d~~Gr~~-aY~i~~~hP-------gd~--- 211 (502) T protein:vir:79 149 QMVSGRINSLTPSAGVHFWLEALEPDFIPMTSDE--SNRLNQGVFV----DDWGRPE-KYLVYKSRP-------VSG--- 211 (502) T ss_pred EEeecccCccCCCcccceEEEEecchhcCCCCCC--CCeeEeeeEE----CCCCceE-EEEEeecCC-------CCC--- Confidence 987765432 58999999987432222 2345555542 2223322 222221110 000 Q ss_pred ccccccccccccccccccccccccccccccc---eEEecC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 211 EFLYDEYGKMTDIQEGHFRINNKEQGWGKVP---FIPFKN-----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEV 282 (479) Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vP---vv~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p 282 (479) ....+.+|| |+++.. ...|.|.|..++..+..++.............+.. T Consensus 212 ----------------------~~~~~~rvpA~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~~~dael~~a~i~A~~ 269 (502) T protein:vir:79 212 ----------------------RQMETKEVDAERMLHLKFVRRLHQMRGTSLLSGVLIRLSALKEYEDSELTAARIAAAL 269 (502) T ss_pred ----------------------cccceeEechhheEEeecccCCccccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhh Confidence 001122333 455543 23599999999999998888776666555555544 Q ss_pred eeeeecCCccc---------hhhHHHHhhccccee-cCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcc-cc Q lcl|Aclame:pro 283 IYVLKEYPGTS---------LQEFIDNIRYYKSIK-VDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPES-QN 351 (479) Q Consensus 283 ~l~~~g~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~-~~ 351 (479) ...++...+.. .......+..+.++. +..+.++++..++.+...+..++..+.+.|....++|-... ++ T Consensus 270 ~~fi~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D 349 (502) T protein:vir:79 270 GMYIRKGDGQSYEPDGNGSKENERELTIQPGIIYDDLKPGEEIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARN 349 (502) T ss_pred eeeeecCCCcccccccCCCCCccccccccCCccccccCCCceeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcc Confidence 44444221111 111112344555554 68888999999888888899999998888877776663222 22 Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccc-----cceeeEEeCCC--CCCCHHHHHH Q lcl|Aclame:pro 352 TGDKSGVALKFLYSLLDLKCSKTEKKFKKAI-RELLWFVCEYLKISGNKSYD-----YKTVQITFNHS--MIINEAEKID 423 (479) Q Consensus 352 ~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l-~~~~~li~~~~~~~~~~~~~-----~~~i~i~f~~~--~p~d~~e~a~ 423 (479) ++ .|-.++++........+...+..|...+ +.+++..+...-..|..+.. .....+.|..+ ...|....++ T Consensus 350 ~s-~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~ 428 (502) T protein:vir:79 350 YN-GTYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQAVASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKEAE 428 (502) T ss_pred cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhcceeeecCCccccChHHHHH Confidence 33 3777778887778777877777666544 33455444433333433221 12346677333 3357777677 Q ss_pred HHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhcc---CC------CCCC---CcCCC Q lcl|Aclame:pro 424 MAAKS--TGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLI---PN------NQDG---VIDET 479 (479) Q Consensus 424 ~~~k~--~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~---~~------~~~~---~~det 479 (479) +..++ +|+.|.+..+...| .|+++.++++.+|++...+..-.. +. ...+ ..++| T Consensus 429 a~~~~i~~Gl~t~~~~~a~~G--~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~e~~~~ 496 (502) T protein:vir:79 429 AWKIQIRGGAATESDWVRAGG--RNPDDVKRRRKAEIDENRKLDLVFDTDPASDKGGSSAATKRQEPQHT 496 (502) T ss_pred HHHHHHHcCCCCHHHHHHHcC--CCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 66554 78999999999987 489999999998887654442111 00 0000 11111 No 95 >protein:vir:77597 Length: 725 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063735;genbank:gi:51236726;genbank:GeneID:2944241 Probab=99.57 E-value=3.8e-14 Score=94.15 Aligned_cols=451 Identities=10% Similarity=-0.009 Sum_probs=210.9 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhH--HHHHHHHHHhccCCcccccccccccccccccccccCcceee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRP--EKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 78 (479) |.+ .+.....+...+...+..+.. .....-.+||.|+|-...- . ...+...++ . T Consensus 1 m~d-------------~~~~~~~~~~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw~~~~-~------~~l~~q~rp----~ 56 (725) T protein:vir:77 1 MAD-------------NENRLESILSRFDADWTASDEARREAKNDLFFSRVSQWDDWL-S------QYTTLQYRG----Q 56 (725) T ss_pred CCc-------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCCCHHH-H------HHHHhcCCC----c Confidence 333 111122233333322222221 2345567899998743210 0 111222233 5 Q ss_pred cchHHHHHHHHHhhhhccCeee--cCC---chhHHH----HHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeC---CC Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGNPIVF--NAD---DDNLTK----LLNDLL-GEEFDDTITELYLNASNKGVEWLHPYIN---RK 145 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~~~~~--~~~---~~~~~~----~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d---~~ 145 (479) +|.++.+|+.+.++-..+.+.+ .+. +.+..+ +++.+. .++.+...+.+..+++++|.+|+-|..| ++ T Consensus 57 ~N~i~~~i~~v~g~~~~nr~d~~v~P~~~~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d 136 (725) T protein:vir:77 57 FDVVRPVVRKLVSEMRQNPIDVLYRPKDGARPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQS 136 (725) T ss_pred cccHHHHHHHHHhhHHhCCcceEEecCCccHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhcCcceeeeeecccCCC Confidence 6999999999999988776543 332 333333 344443 4788888899999999999999888543 22 Q ss_pred ---CceEEEEE----ccceeEEEEcCCCCC------ceEEEEEEEeee-----------------------------ccc Q lcl|Aclame:pro 146 ---GEFKYVII----PAEEAIPIWDSKRQR------ELVAFIRFYYIE-----------------------------DID 183 (479) Q Consensus 146 ---~~~~i~~~----~p~~~~~~~d~~~~~------~~~~~i~~~~~~-----------------------------~~~ 183 (479) +.++|..+ +|.+++ ||+.... +.+ +++.|... ..+ T Consensus 137 ~~~~~~~i~~~~~~~~~~~v~--~Dp~a~~~D~sDar~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (725) T protein:vir:77 137 PTSNNQVIRREPIHSACSHVI--WDSNSKLMDKSDARHC-TVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLT 213 (725) T ss_pred CCCCceeeEEeecccChhhce--eCchhhccChhhHHHH-HHHhcCCHHHHHHHHhhCCcchhhcccccccccccccccC Confidence 34444443 344444 4543211 111 11111111 011 Q ss_pred CceEEEEEEEeCCcEEEEE--EcC--Ccccccccccc------------------------ccccccccccccccccccc Q lcl|Aclame:pro 184 GNKIKRVEYYTENDITYFI--ERG--NSFIQEFLYDE------------------------YGKMTDIQEGHFRINNKEQ 235 (479) Q Consensus 184 ~~~~~~~~~y~~~~i~~~~--~~~--~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 235 (479) .+.+..+++|....+...+ ... ++......... ...+....+...+.+..+. T Consensus 214 ~d~vrv~E~~~r~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~rv~~~~~~g~~~l~~~~~~ 293 (725) T protein:vir:77 214 QDTIQIAEFYEVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLI 293 (725) T ss_pred CCeeEEEEEEEEEEEeeEEEEecCCCCcceeecChhhHHHHHHHhhhcCchhhhhcccceeeeeEeeecCceeeccCCcC Confidence 2445566766654433222 111 11110000000 0000111111122233445 Q ss_pred cccccceEEecCC-------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeee-ecCCccchhhHHHHh-hcccc Q lcl|Aclame:pro 236 GWGKVPFIPFKNN-------EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL-KEYPGTSLQEFIDNI-RYYKS 306 (479) Q Consensus 236 ~~g~vPvv~~~n~-------~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~-~g~~~~~~~~~~~~~-~~~~~ 306 (479) +-+.+|+|++.-. ..+.|.+.++++.++.+|...|.+...+-..+.-.... .+.. ....+..... ..... T Consensus 294 ~~~~~P~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~ 372 (725) T protein:vir:77 294 AGEHIPIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQI-AGFEHMYDGNDDYPYY 372 (725) T ss_pred CCCccceEEEeeeeeccCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhccccccccchhhh-hHHHHHHHhccCCcee Confidence 5566777765422 22338888999999999999999988887655443222 1211 1111111111 11000 Q ss_pred ----eecCCC----CcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc-ccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 307 ----IKVDGG----GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD-KSGVALKFLYSLLDLKCSKTEKK 377 (479) Q Consensus 307 ----~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~-~Sg~Ai~~~~~~l~~k~~~~~~~ 377 (479) +...++ +.+.....+.-..++...++.....|-..++..+...|..+| .||+|+..+-......+...... T Consensus 373 ~~~~~~~~~g~~~~~~i~~~~~~~lp~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~~SG~ai~~rq~qg~~~~~~~~Dn 452 (725) T protein:vir:77 373 LLNRTDENSGDLPTQPLAYYENPEVPQANAYMLEAATSAVKEVATLGVDTEAVNGGQVAFDTVNQLNMRADLETYVFQDN 452 (725) T ss_pred cccccccCCCcccccCccccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH Confidence 111111 122233322223456668888888888888877666666555 79999999988888888888888 Q ss_pred HHHHHHHHHHHHHHHHHhc----------CCC-ccc------------------------cceeeEEeCCCCCCCHHHHH Q lcl|Aclame:pro 378 FKKAIRELLWFVCEYLKIS----------GNK-SYD------------------------YKTVQITFNHSMIINEAEKI 422 (479) Q Consensus 378 ~~~~l~~~~~li~~~~~~~----------~~~-~~~------------------------~~~i~i~f~~~~p~d~~e~a 422 (479) +..+.+++.++++.+.... +.. ... ..++.|.=.+..+.=..+.+ T Consensus 453 l~~~~~~~g~~lL~lI~~~~~~~rv~RI~~ed~~~~~v~in~~~~~~~~G~~~~~NDi~g~~Dv~v~~~p~~~s~r~~~~ 532 (725) T protein:vir:77 453 LATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKDVQLMAEVVDLATGEKQVLNDIRGRYECYTDVGPSFQSMKQQNR 532 (725) T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecccccccccchhHhhhhhccceeeEEeeccchHHHHHHHH Confidence 8888888777666654331 110 000 02223332333332233444 Q ss_pred HHHHHHhccCCh------HHHHHhCCC--CCCHHHHHHHHHHHHHHHHhhhhccCCC----------------------- Q lcl|Aclame:pro 423 DMAAKSTGIVSD------ETIVSNHPW--VEDVNDELERLKKQEDTQKEYDDLIPNN----------------------- 471 (479) Q Consensus 423 ~~~~k~~g~is~------et~~~~l~~--~~d~~~El~~i~~E~~~~~~~~~~~~~~----------------------- 471 (479) ..++.+...++. ..+...++. ....++.++++.++........+..+.+ T Consensus 533 ~~l~qll~~~~~~~~~~~~~l~~~~~l~d~~~~~e~~erirkq~~~~~~~q~~~~~e~q~~~~~qq~~~~q~~~e~~q~q 612 (725) T protein:vir:77 533 AEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQ 612 (725) T ss_pred HHHHHHHHhccccchhHHHHHHHhhccccchHHHHHHHHHHhhhhhhhccCCCChhhHHHHHHHHHHHHHhHHHHHHHHH Confidence 444444333321 112222221 1112233444443221111100000000 Q ss_pred ---CCCCcC--CC Q lcl|Aclame:pro 472 ---QDGVID--ET 479 (479) Q Consensus 472 ---~~~~~d--et 479 (479) ..+..+ .+ T Consensus 613 ~~~~~~qa~~~ka 625 (725) T protein:vir:77 613 GVLLQGQAELAKA 625 (725) T ss_pred HHHHHHHHHHHHH Confidence 000000 00 No 96 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.56 E-value=1.1e-12 Score=86.08 Aligned_cols=427 Identities=9% Similarity=0.002 Sum_probs=226.7 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCC--c-cc--cccccccccc--ccccc--cccCc-ce Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNT--D-VN--NKRRYYLLDG--AKVDD--FTKVN-NK 76 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~--~-~~--~~~~~~~~~~--~~~~~--~~~~~-~r 76 (479) |.|-.......-. +.........||.|.. . .. +.+.....+. ...-. ..++. .- T Consensus 1 ~~~p~~~~~~~~~----------------~~~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~lr~RaRdl~ 64 (533) T protein:vir:34 1 MKTPTIPTLLGPD----------------GMTSLREYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTRGNARADDLV 64 (533) T ss_pred CCCchhhhhhccc----------------ccchHHHHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHH Confidence 3333332211100 0011122234554321 1 00 0010000000 00000 00000 00 Q ss_pred eecchHHHHHHHHHhhhhccCeeecCC------------c----hhHHHHHHHHHhc-----------CHHHHHHHHHHH Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVFNAD------------D----DNLTKLLNDLLGE-----------EFDDTITELYLN 129 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~~~~------------~----~~~~~~~~~~~~n-----------~~~~~~~~~~~~ 129 (479) ...+|++-+|+..+..+.|.+++..+. + +.+...|+.|-.+ +|...+..+++. T Consensus 65 rNn~~a~~av~~~~~nvVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~ 144 (533) T protein:vir:34 65 RNNGYAANAIQLHQDHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAM 144 (533) T ss_pred hcChHHHHHHHHHHHHhhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHH Confidence 135899999999999999999987642 1 2233445555321 477777889999 Q ss_pred HHhCCeEEEEEEeCCCC----ceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcC Q lcl|Aclame:pro 130 ASNKGVEWLHPYINRKG----EFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERG 205 (479) Q Consensus 130 ~~~~G~~~~~v~~d~~~----~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~ 205 (479) .++.|.+|+...+.+.+ .+++..++|+.+.--++......+..+|++ +..|..+ -+.++.... . T Consensus 145 ~~~dGE~f~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~----d~~Gr~~-aY~i~~~~~-------~ 212 (533) T protein:vir:34 145 HAFNGELFVQATWDTSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQI----NDSGAAL-GYYVSEDGY-------P 212 (533) T ss_pred HHhCCceEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCceEeeeEE----CCCCCeE-EEEEeecCC-------C Confidence 99999999998776543 368999999987644443334456666643 2233322 222221110 0 Q ss_pred CccccccccccccccccccccccccccccccccccceEEecC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 206 NSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN-----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQ 280 (479) Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~ 280 (479) +... ..+..+. .....+.-=|+++.. ...|.|.|..++..+..++.............+ T Consensus 213 ~~~~---------------~~~~~~~-~~~~v~a~~VlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A 276 (533) T protein:vir:34 213 GWMP---------------QKWTWIP-RELPGGRASFIHVFEPVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKA 276 (533) T ss_pred Cccc---------------cccceee-eeeccChhHeeeeccccCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 0000 0000000 000111111444433 246999999999988888877666555555444 Q ss_pred cceeeeecCCc-------------cch-hhH--------------HHHhhcccceecCCCCcceeeecCCCHHHHHHHHH Q lcl|Aclame:pro 281 EVIYVLKEYPG-------------TSL-QEF--------------IDNIRYYKSIKVDGGGGVDKLEINIPVEAKKELLD 332 (479) Q Consensus 281 ~p~l~~~g~~~-------------~~~-~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (479) .-...++...+ .+. +.. ...+..+.+..+..+.++++.+.+.+...+..+.. T Consensus 277 ~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~ 356 (533) T protein:vir:34 277 MYAATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAPVRLGGAKVPHLMPGDSLNLQTAQDTDNGYSVFEQ 356 (533) T ss_pred hheeeeecCCCcccccccccCCCcccccccccccchhhhhccCcceeeccCceeeecCCCCeeeecCCCCCCCCHHHHHH Confidence 33333332110 000 000 01245566777888889999998888888889999 Q ss_pred HHHHHHHHHhCCCCCc-ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcc------cc- Q lcl|Aclame:pro 333 RLEKNIIIFGQGVNPE-SQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAI-RELLWFVCEYLKISGNKSY------DY- 403 (479) Q Consensus 333 ~l~~~i~~~s~~~~~~-~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l-~~~~~li~~~~~~~~~~~~------~~- 403 (479) .+.+.|....+.|-.. .++++++|-.++++........+...+..|...+ +.+++..+...-..+..+. ++ T Consensus 357 ~~lr~iAaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~ 436 (533) T protein:vir:34 357 SLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMGRRKFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQ 436 (533) T ss_pred HHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCccCCCch Confidence 8888877766655332 2345667777888888888777777777666544 3344433332222333221 11 Q ss_pred ----ceeeEEeC--CCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhc---cC--- Q lcl|Aclame:pro 404 ----KTVQITFN--HSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDL---IP--- 469 (479) Q Consensus 404 ----~~i~i~f~--~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~---~~--- 469 (479) ....+.|. .....|....+++.... +|+.|.+..+...| .|+++.++++.+|++...+..=. .+ T Consensus 437 ~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G--~D~~ev~~q~a~e~~~~~~~gl~~~~~~~~~ 514 (533) T protein:vir:34 437 EARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRG--DDYQEIFAQQVRETMERRAAGLKPPAWAAAA 514 (533) T ss_pred hhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCCCCCCCCCcC Confidence 12356673 33335777777766654 78999999999987 48999999999888765543110 01 Q ss_pred CC-------CCCCcCCC Q lcl|Aclame:pro 470 NN-------QDGVIDET 479 (479) Q Consensus 470 ~~-------~~~~~det 479 (479) .. +++..|.+ T Consensus 515 ~~s~~~~~~~~~~~~~~ 531 (533) T protein:vir:34 515 FESGLRQSTEEEKSDSR 531 (533) T ss_pred ccCCCCCCCCCCcccCC Confidence 11 11111111 No 97 >protein:vir:100920 Length: 725 # NCBI annotation: Gp1 # Family: family:all:487 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006406;genbank:gi:46358698;genbank:GeneID:2777070 Probab=99.54 E-value=9.3e-14 Score=92.02 Aligned_cols=452 Identities=11% Similarity=0.003 Sum_probs=209.3 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhH--HHHHHHHHHhccCCcccccccccccccccccccccCcceee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRP--EKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 78 (479) |++. +.....+...+...+..+.. .....-.+||.|+|-...- . ...+...++ . T Consensus 1 m~d~-------------~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~QW~~~~-~------~~l~~q~rp----~ 56 (725) T protein:vir:10 1 MADN-------------ENRLESILSRFDADWTASDEARREAKNDLFFSRVSQWDDWL-S------QYTTLQYRG----Q 56 (725) T ss_pred CCch-------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHH-H------HHHHhcCCC----c Confidence 3331 11112222222222222221 2345667899998743210 1 111222233 4 Q ss_pred cchHHHHHHHHHhhhhccCeee--cC---CchhHHH----HHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeC---CC Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGNPIVF--NA---DDDNLTK----LLNDLL-GEEFDDTITELYLNASNKGVEWLHPYIN---RK 145 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~~~~~--~~---~~~~~~~----~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d---~~ 145 (479) +|.++.+|+.++++-..+.+.+ .+ ++.+..+ +++.+. .++.+...+.+..+++++|.+|+.|..| ++ T Consensus 57 ~N~i~~~v~~v~g~e~~nr~d~~v~p~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~ev~~d~~~~d 136 (725) T protein:vir:10 57 FDVVRPVVRKLVSEMRQNPIDVLYRPKDGASPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQS 136 (725) T ss_pred ccchHHHHHHHHhhHHhCCcceEEecCCcchHHHHHHHHHHHHHHHHhcCcchHHhHHHHHHhhcCcceeeeeccccCCC Confidence 6999999999999988776543 33 2333333 334443 4788888899999999999999888533 32 Q ss_pred ---CceEEEEE----ccceeEEEEcCCCC------CceEEEEEEEeee-----------------------------ccc Q lcl|Aclame:pro 146 ---GEFKYVII----PAEEAIPIWDSKRQ------RELVAFIRFYYIE-----------------------------DID 183 (479) Q Consensus 146 ---~~~~i~~~----~p~~~~~~~d~~~~------~~~~~~i~~~~~~-----------------------------~~~ 183 (479) +.+.|..+ +|.+++ ||+... ...+ +++.|... ... T Consensus 137 ~~~~~~~i~~~~i~~~~~~v~--~Dp~a~~~D~sDar~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 213 (725) T protein:vir:10 137 PTSNNQVIRREPIHSACSHVI--WDSNSKLMDKSDARHC-TVIHSMSQNGWDDFAEKYDLDADNIPSFQNPNDWVFPWLT 213 (725) T ss_pred CCCCceeeeeeecccCHhHcc--cCchhhccChhhhhhh-hhhccCCHHHHHHHHHhCCCcccccccccccccccccccC Confidence 34444443 344444 554321 1111 12222110 001 Q ss_pred CceEEEEEEEeCCcEEE--EEEcC--Ccccccccccc------------------------ccccccccccccccccccc Q lcl|Aclame:pro 184 GNKIKRVEYYTENDITY--FIERG--NSFIQEFLYDE------------------------YGKMTDIQEGHFRINNKEQ 235 (479) Q Consensus 184 ~~~~~~~~~y~~~~i~~--~~~~~--~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 235 (479) .+.+..+++|....+.. +.... ++......... ...+....+...+.+..+. T Consensus 214 ~~~vrv~E~~~r~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~~~~ 293 (725) T protein:vir:10 214 QDTIQIAEFYEVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLI 293 (725) T ss_pred CCeEEEEEEEEEEEEeeEEEEeccCCCCceeecchhhhHHHHHHhhcccchhhhhccceeeEEEEEeecchhhhcCCCCC Confidence 12334445544332211 11111 11111100000 0001111111222233344 Q ss_pred cccccceEEecCC-------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhccccee Q lcl|Aclame:pro 236 GWGKVPFIPFKNN-------EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIK 308 (479) Q Consensus 236 ~~g~vPvv~~~n~-------~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~ 308 (479) +-+.+|+|+|.-. ..+-|.+.++++.++.+|...|.+...+...+...+...........+..........+. T Consensus 294 ~~~~fP~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~~~ 373 (725) T protein:vir:10 294 AGEHIPIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYL 373 (725) T ss_pred CCCceeEEEEEeeeeccCCcceeeeeeccchhHHHHHHHHHHHHHHHHHhcCCccccccHhhhhHHHHHHhccCCceeee Confidence 5566777766421 223388999999999999999999988876554433321111111111111111111111 Q ss_pred c-----CCC----CcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc-ccHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 V-----DGG----GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD-KSGVALKFLYSLLDLKCSKTEKKF 378 (479) Q Consensus 309 ~-----~~~----~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~-~Sg~Ai~~~~~~l~~k~~~~~~~~ 378 (479) . .++ +.+++...+.-..++...++.....|..+++..+...|..+| .||+|+..+-.............+ T Consensus 374 ~~~~~~~~g~~~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~~SG~ai~~rq~qg~~~l~~~~Dnl 453 (725) T protein:vir:10 374 LNRTDENNGEMPTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGGQVAYDTVNQLNMRADLETYVFQDNL 453 (725) T ss_pred cccccccCcccccccCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhCcCchhhHHHHHHHHHHHHHHHHHHHHHHH Confidence 1 111 122232322334567778888899999998877766666554 699999988888877777777777 Q ss_pred HHHHHHHHHHHHHHHHhc----------CCC---cc--------c--------------cceeeEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 379 KKAIRELLWFVCEYLKIS----------GNK---SY--------D--------------YKTVQITFNHSMIINEAEKID 423 (479) Q Consensus 379 ~~~l~~~~~li~~~~~~~----------~~~---~~--------~--------------~~~i~i~f~~~~p~d~~e~a~ 423 (479) ..+.+++.++++.+.... +.. .+ + ..++.|.=.+..+.-..+.+. T Consensus 454 ~~~~~~~g~~lL~lI~~~~~~er~~RI~~edg~~~~v~in~~~~d~~~G~~v~~Ndi~g~~Dv~v~~~p~~~s~r~~~~~ 533 (725) T protein:vir:10 454 ATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNRS 533 (725) T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeEeccccccccccchhhhhccccceeEEEeeccCcHHHHHHHHH Confidence 777777766666553321 110 00 0 023333333333333444555 Q ss_pred HHHHHhccCCh------HHHHHhCCC--CCCHHHHHHHHHHHHHHHHhhhhccCCCC----------------------- Q lcl|Aclame:pro 424 MAAKSTGIVSD------ETIVSNHPW--VEDVNDELERLKKQEDTQKEYDDLIPNNQ----------------------- 472 (479) Q Consensus 424 ~~~k~~g~is~------et~~~~l~~--~~d~~~El~~i~~E~~~~~~~~~~~~~~~----------------------- 472 (479) .++.+...++. ..++..++. ....++-.++|.++...........+... T Consensus 534 ~l~qll~~~~~~~~~~~~~l~~~~~~~d~~~~~e~~erirkq~~~~~~~~~~~~e~~q~~~e~qq~~~~q~~~e~~q~~~ 613 (725) T protein:vir:10 534 EILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQG 613 (725) T ss_pred HHHHHHHhccccchhHHHHHHHHhhcCCchhHHHHHHHHHhhhhhhccCCccccchhHHHHHHHHHHHhhhHHHHHHHHH Confidence 55554433331 122222222 22223334444432211110000000000 Q ss_pred ---CC------CcCCC Q lcl|Aclame:pro 473 ---DG------VIDET 479 (479) Q Consensus 473 ---~~------~~det 479 (479) .. ..-|+ T Consensus 614 ~~~~~qae~~ka~aE~ 629 (725) T protein:vir:10 614 VLLQGQAELAKAQNQT 629 (725) T ss_pred HHHHHHHHHHHHHHHH Confidence 00 00000 No 98 >protein:vir:9263 Length: 725 # NCBI annotation: 1 # Family: family:all:487 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720327;genbank:gi:24371585;genbank:GeneID:955785 Probab=99.52 E-value=6.4e-14 Score=92.92 Aligned_cols=452 Identities=10% Similarity=-0.030 Sum_probs=204.7 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhh--HHHHHHHHHHhccCCcccccccccccccccccccccCcceee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHR--PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 78 (479) |.+. ......+...+...+..+. +.....-.+||.|+|-... .. ...+...++ . T Consensus 1 m~d~-------------~~~~~~~~~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw~~~-~~------~~l~~q~rp----~ 56 (725) T protein:vir:92 1 MADN-------------ENRLESILSRFDADWTASDEARREAKNDLFFSRISQWDDW-LS------QYTTLQYRG----Q 56 (725) T ss_pred CCch-------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHH-HH------HHHHhcCCC----c Confidence 3331 1111222222222222222 1234566789999874221 01 111222233 4 Q ss_pred cchHHHHHHHHHhhhhccCeee--cC---CchhHHH----HHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeC---CC Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGNPIVF--NA---DDDNLTK----LLNDLL-GEEFDDTITELYLNASNKGVEWLHPYIN---RK 145 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~~~~~--~~---~~~~~~~----~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d---~~ 145 (479) +|.++.+|+.+.++-..+.+.+ .+ ++.+..+ +++.+. .++.+...+.+..+++++|.+|+-|..| ++ T Consensus 57 ~N~i~~~i~~v~g~e~~nr~d~~v~P~~~~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d 136 (725) T protein:vir:92 57 FDVVRPVVRKLVSEMRQNPIDVLYRPKDGASPDAADVLMGMYRTDMRHNTAKIAVNVAVREQIESGVGAWRLVTDYEDQS 136 (725) T ss_pred ccchHHHHHHHHhhHHhCCcceEEecCCccHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhcCcceeeeeecccCCC Confidence 6999999999999987776543 33 2333333 334443 4788888999999999999999888543 22 Q ss_pred ---CceEEEEEc---cc-eeEEEEcCCCCC------ceEEEEEEEeee-----------------------------ccc Q lcl|Aclame:pro 146 ---GEFKYVIIP---AE-EAIPIWDSKRQR------ELVAFIRFYYIE-----------------------------DID 183 (479) Q Consensus 146 ---~~~~i~~~~---p~-~~~~~~d~~~~~------~~~~~i~~~~~~-----------------------------~~~ 183 (479) +.++|...+ |. +++ ||+.... +.++ ++.|... ..+ T Consensus 137 ~~~~~~~i~~~~i~~~~~~V~--~Dp~a~~~D~sDar~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (725) T protein:vir:92 137 PTSNNQVIRREPIHSACSHVI--WDSNSKLMDKSDSRHCT-VIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLT 213 (725) T ss_pred CCCCceeeEEeeccCChhhcc--cCchhhccChhhHHHHH-HHhcCCHHHHHHHHhhcCcchhhhhhcccCCcccccccC Confidence 345554432 22 232 4543211 0111 1111110 001 Q ss_pred CceEEEEEEEeCCcEEEEE--EcC--Ccccccccccc------------------------ccccccccccccccccccc Q lcl|Aclame:pro 184 GNKIKRVEYYTENDITYFI--ERG--NSFIQEFLYDE------------------------YGKMTDIQEGHFRINNKEQ 235 (479) Q Consensus 184 ~~~~~~~~~y~~~~i~~~~--~~~--~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 235 (479) .+.+..+++|....+.... ... ++......... ...+....+...+.+..+. T Consensus 214 ~d~vrv~e~~~r~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~~~~ 293 (725) T protein:vir:92 214 QDTIQIAEFYEVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLI 293 (725) T ss_pred CCeEEEEEEEEEEEEeeeEEeecCCCCCceeecChhhHHHHHHHHhccCchhhhhccceeeeEeeeeecchhhhcCCCCC Confidence 2344555666544332211 111 11111100000 0011111122222233344 Q ss_pred cccccceEEecCC-------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhccccee Q lcl|Aclame:pro 236 GWGKVPFIPFKNN-------EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIK 308 (479) Q Consensus 236 ~~g~vPvv~~~n~-------~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~ 308 (479) +-+.+|+|+|.-. ..+.|.+.++++.++.+|...|.+...+-..+...+...-..................+. T Consensus 294 ~~~~~P~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 373 (725) T protein:vir:92 294 AGEHIPIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYL 373 (725) T ss_pred CCCceeeEEEEeeeeccCCcccccceeccchhHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHhccCccceee Confidence 5566777766422 223388999999999999999999888876555433321111111111111111111111 Q ss_pred c---C-CC-----CcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc-cccHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 V---D-GG-----GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG-DKSGVALKFLYSLLDLKCSKTEKKF 378 (479) Q Consensus 309 ~---~-~~-----~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-~~Sg~Ai~~~~~~l~~k~~~~~~~~ 378 (479) . . .+ +.+++...+.-..++...++.....|..+++..+-..|..+ +.||+|+..+-.............+ T Consensus 374 ~~~~~~~~g~~~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~~SG~ai~~rq~qg~~~l~~~~Dnl 453 (725) T protein:vir:92 374 LNRTDENNGEMPTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGGQVAYDTVNQLNMRADLETYVFQDNL 453 (725) T ss_pred ccccccccccccccCCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhccCchhhHHHHHHHHHHHHHHHHHHHHHHH Confidence 1 1 11 12233333333456777888888999888887766555544 4799999988877777777777777 Q ss_pred HHHHHHHHHHHHHHHHhcC----------CC-ccc------------------------cceeeEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 379 KKAIRELLWFVCEYLKISG----------NK-SYD------------------------YKTVQITFNHSMIINEAEKID 423 (479) Q Consensus 379 ~~~l~~~~~li~~~~~~~~----------~~-~~~------------------------~~~i~i~f~~~~p~d~~e~a~ 423 (479) ..+.++..++++.+..... .. ... ..++.|.=.+..+.-..+.+. T Consensus 454 ~~~~~~~g~~lL~lI~~~~~~~r~~RI~~edg~~~~v~in~~~~~~~~G~~~~~Ndi~g~~Dv~v~~~p~~~s~r~~~~~ 533 (725) T protein:vir:92 454 ATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNRA 533 (725) T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCcceEEeccccccccccchhhhhccccceeeEEeeccChHHHHHHHHH Confidence 7777776666665433211 00 000 022223223333332334444 Q ss_pred HHHHHhccCChH------HHHHhCC--CCCCHHHHHHHHHHHHHHHHhhhhcc-----------CCCCCCCcCCC Q lcl|Aclame:pro 424 MAAKSTGIVSDE------TIVSNHP--WVEDVNDELERLKKQEDTQKEYDDLI-----------PNNQDGVIDET 479 (479) Q Consensus 424 ~~~k~~g~is~e------t~~~~l~--~~~d~~~El~~i~~E~~~~~~~~~~~-----------~~~~~~~~det 479 (479) .++.+...++.- ++...++ .....++..+++.++..+.....+.. .........++ T Consensus 534 ~l~ql~~~~~~~~~~~~~~l~~~~~~~d~~~~~e~~erirkq~~~~~~~~~~~~e~~q~~~~~qqa~~~q~~~e~ 608 (725) T protein:vir:92 534 EILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAM 608 (725) T ss_pred HHHHHHHhcccchhHHHHHHHHHhhcccchHHHHHHHHHHhhhchhccCCccchhhhHHHHHHHHHHHhhhHHHH Confidence 444443333211 1112221 11112233344432211100000000 00000000000 No 99 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.52 E-value=1.5e-12 Score=85.41 Aligned_cols=432 Identities=11% Similarity=0.061 Sum_probs=227.1 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhH-HHHHHHHHHhcc--CCc-cc--ccccccccccc-ccc-c--c Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRP-EKYKQGEEYYYG--NTD-VN--NKRRYYLLDGA-KVD-D--F 70 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~yy~g--~~~-~~--~~~~~~~~~~~-~~~-~--~ 70 (479) |++ .....+.. ....+. .+...-...|+| .+. .. +.+.....+.. ... . . T Consensus 1 m~~-------------------~~~r~~~~-~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr 60 (553) T protein:vir:63 1 MTK-------------------VTVRKLSE-VTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIAD 60 (553) T ss_pred Ccc-------------------hhhhhhcc-cccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHHH Confidence 111 11111110 111111 111111123443 211 11 11111000000 000 0 0 Q ss_pred ccCc-ceeecchHHHHHHHHHhhhhccCeeecCC-------------c----hhHHHHHHHHHhc-----------CHHH Q lcl|Aclame:pro 71 TKVN-NKAINNYHKLLVDQKVGYSVGNPIVFNAD-------------D----DNLTKLLNDLLGE-----------EFDD 121 (479) Q Consensus 71 ~~~~-~ri~~n~~~~iv~~~a~~l~g~~~~~~~~-------------~----~~~~~~~~~~~~n-----------~~~~ 121 (479) .++. .-...+|++-+|+..+..+.|.+++..+. + +.+...|+.|-.+ +|.. T Consensus 61 ~RaRdL~rNn~~a~~av~~~~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~ 140 (553) T protein:vir:63 61 ARGRDMADNDGFTNGAVGYQRDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTG 140 (553) T ss_pred HHHHHHHhcChHHHHHHHHHHHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHH Confidence 0000 00135899999999999999999886532 1 2233445556321 4777 Q ss_pred HHHHHHHHHHhCCeEEEEEEeCCC-C---ceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEe--C Q lcl|Aclame:pro 122 TITELYLNASNKGVEWLHPYINRK-G---EFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYT--E 195 (479) Q Consensus 122 ~~~~~~~~~~~~G~~~~~v~~d~~-~---~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~--~ 195 (479) .+..+++..+..|.+|+...+.+. | .+++..++|+.+..-++......+..+|.+ +..|.. ..+.++. + T Consensus 141 ~q~l~~r~~~~dGE~~~~~~~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~----d~~Gr~-vaY~i~~~hP 215 (553) T protein:vir:63 141 LIRLGVVGYVKTGEVLATAEWDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQY----DKRGRP-QGYWIQVAHP 215 (553) T ss_pred HHHHHHHHHHhCCceEEEeeeccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEE----CCCCce-EEEEeeccCC Confidence 788899999999999988766543 2 368899999988655554444556666643 223332 2233332 2 Q ss_pred CcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecC-----CCCCCchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 196 NDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN-----NEKCVSDLTFYKSLIDIYDNNIS 270 (479) Q Consensus 196 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~s~~~~v~~lid~~~~~~s 270 (479) +..+........+.. +. .....+.-=|+++.. ...|.|.|..++..+..++.... T Consensus 216 gd~~~~~~~~~~~~r-------------------~~-~~~~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~d 275 (553) T protein:vir:63 216 GDLYQMAPDMYKWKF-------------------VQ-QSKPWGRRQVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKE 275 (553) T ss_pred Cccccccccccceee-------------------ec-cccccChhHheecccccCCCcccCCchHHHHHHHHHHHhHHHH Confidence 222211111111000 00 000111111233322 34699999999999888888766 Q ss_pred HHHHHHHHhccceeeee-cCCccchhh-----------------------------HHHHhhcccceecCCCCcceeeec Q lcl|Aclame:pro 271 TLADNLDEIQEVIYVLK-EYPGTSLQE-----------------------------FIDNIRYYKSIKVDGGGGVDKLEI 320 (479) Q Consensus 271 ~~~~~~~~~~~p~l~~~-g~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 320 (479) .........+.-...++ +.+.+...+ ....+..+.+..+..+.++++.++ T Consensus 276 aeL~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p 355 (553) T protein:vir:63 276 MSLQNAVINASYAAAIESELPPEFIHSQMSGGSPNADMVGIFGKYMDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPM 355 (553) T ss_pred HHHHHHHHhhhheeeeecCCChhhhhhhcccccccccccccccccccccccccccccceeecCceeeecCCCCeeeecCC Confidence 66555555444333333 211110000 011345566777888889999998 Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCc-ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC Q lcl|Aclame:pro 321 NIPVEAKKELLDRLEKNIIIFGQGVNPE-SQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAI-RELLWFVCEYLKISGN 398 (479) Q Consensus 321 ~~~~~~~~~~~~~l~~~i~~~s~~~~~~-~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l-~~~~~li~~~~~~~~~ 398 (479) +.+...+..+.+.+.+.|....++|-.. .++++++|-.++++........+...+..|...+ +.+++..+...-..+. T Consensus 356 ~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~ 435 (553) T protein:vir:63 356 GTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANYSSIQAGIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGE 435 (553) T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC Confidence 8888888899888888877766655322 2345566777788777777777777777666544 3345544443333333 Q ss_pred Ccccc--------------ceeeEEeCCCCC--CCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 399 KSYDY--------------KTVQITFNHSMI--INEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELERLKKQEDT 460 (479) Q Consensus 399 ~~~~~--------------~~i~i~f~~~~p--~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~~El~~i~~E~~~ 460 (479) .+... ..+.+.|..+-. .|....+++.... +|+.|.+..+...| .|+++.++++.+|++. T Consensus 436 i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~~A~~~~i~~G~~t~~~~~a~~G--~D~~~v~~q~a~e~~~ 513 (553) T protein:vir:63 436 VPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKETQAAVMRIDAGLSTYEREIARLG--GDFRKSFAQRAREDAL 513 (553) T ss_pred ccCCCcccchhhcchhhhhhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhC--CCHHHHHHHHHHHHHH Confidence 22111 123566744333 4766667766554 78999999999997 4889889999888876 Q ss_pred HHhhhhc---cCC-------------CCCCCcCCC Q lcl|Aclame:pro 461 QKEYDDL---IPN-------------NQDGVIDET 479 (479) Q Consensus 461 ~~~~~~~---~~~-------------~~~~~~det 479 (479) ..+..-. .+. .+++..+++ T Consensus 514 ~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (553) T protein:vir:63 514 LKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAAQT 548 (553) T ss_pred HHHcCCCCCCCCccccCCCcccCCCCCCCCCCCCc Confidence 5444110 110 011111111 No 100 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.51 E-value=3.5e-12 Score=83.37 Aligned_cols=424 Identities=10% Similarity=-0.012 Sum_probs=226.5 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCc---cccc--ccccccccc-ccc---ccc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTD---VNNK--RRYYLLDGA-KVD---DFT 71 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~---~~~~--~~~~~~~~~-~~~---~~~ 71 (479) |-+.-++- -....-......||.|... .... +.....+.. ... -.. T Consensus 1 ~~~~~~~~-------------------------~~~~~~~~~~~~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~ 55 (530) T protein:vir:38 1 MKIPSLVG-------------------------PDGKTSLREYAGYHGGGGGFGGQLRGWNPPSESADAALLPNYSRGNA 55 (530) T ss_pred Cccceeec-------------------------CccccchHHHhhhhcccCCCCCcccccccCCCCHHHHHHHHHHHHHH Confidence 10000000 0001112334456654211 1100 000000000 000 000 Q ss_pred cCc-ceeecchHHHHHHHHHhhhhccCeeecCC------------c----hhHHHHHHHHHh-----------cCHHHHH Q lcl|Aclame:pro 72 KVN-NKAINNYHKLLVDQKVGYSVGNPIVFNAD------------D----DNLTKLLNDLLG-----------EEFDDTI 123 (479) Q Consensus 72 ~~~-~ri~~n~~~~iv~~~a~~l~g~~~~~~~~------------~----~~~~~~~~~~~~-----------n~~~~~~ 123 (479) ++. .-...+|++.+|+..+..+.|.+++..+. + +.+..+|+.|-. .+|...+ T Consensus 56 RaRdl~rNn~~a~~av~~~~~nvVG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q 135 (530) T protein:vir:38 56 RADDLVRNNGYAANAVQLHQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMI 135 (530) T ss_pred HHHHHHhcChHHHHHHHHHHHHhhCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHH Confidence 000 00135899999999999999999876542 2 223345555532 2577778 Q ss_pred HHHHHHHHhCCeEEEEEEeCCCC----ceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEE Q lcl|Aclame:pro 124 TELYLNASNKGVEWLHPYINRKG----EFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDIT 199 (479) Q Consensus 124 ~~~~~~~~~~G~~~~~v~~d~~~----~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~ 199 (479) ..+.+..++.|.+|+...+++++ .+++..++|+.+---++......+..+|.+ +..|..+ .+.++..+. T Consensus 136 ~l~~r~~~~dGE~~~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~----d~~Gr~~-aY~i~~~~~-- 208 (530) T protein:vir:38 136 REGVAMHAFNGELCVQATWDSDSTRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKI----NDSGAAL-GYYVSDDGY-- 208 (530) T ss_pred HHHHHHHhhCCceEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCeeEeeeEE----CCCCceE-EEEEeeccC-- Confidence 88999999999999998776543 368999999987544443344456666643 2233322 222221100 Q ss_pred EEEEcCCccccccccccccccccccccccccccccccccccceEEecCC-----CCCCchHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 YFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNN-----EKCVSDLTFYKSLIDIYDNNISTLAD 274 (479) Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~-----~~g~s~~~~v~~lid~~~~~~s~~~~ 274 (479) .+.... .+..+ ......+.--|+++... ..|.|.|..++..+..++........ T Consensus 209 ----~~~~~~----------------~~~~~-~~~~~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~ 267 (530) T protein:vir:38 209 ----PGWMAQ----------------NWTYI-PRELPGGRPSFIHVFEPMEDGQTRGANAFYSVMEQMKMLDTLQNTQLQ 267 (530) T ss_pred ----CCcccc----------------cccee-eeeeccChhHeEeeccccCCCcccCCchHHHHHHHHHHHhHHHHHHHH Confidence 000000 00000 00112222235555443 35899999999998888877666555 Q ss_pred HHHHhccceeeeecCCc-------------cchhh---------------HHHHhhcccceecCCCCcceeeecCCCHHH Q lcl|Aclame:pro 275 NLDEIQEVIYVLKEYPG-------------TSLQE---------------FIDNIRYYKSIKVDGGGGVDKLEINIPVEA 326 (479) Q Consensus 275 ~~~~~~~p~l~~~g~~~-------------~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (479) .....+.-...++...+ .+... ....+..+.+..+..+.++++.+++.+... T Consensus 268 ~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~ 347 (530) T protein:vir:38 268 SAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAPVRLGGARVPHLLPGDSLNLQSAQDTDNG 347 (530) T ss_pred HHHHhhhheeeeeccCCccccccccccCCcccccccccccchhhhhcccccceeccCceeeecCCCCeeeeeCCCCCCCC Confidence 55554443333332110 00000 001245566677788889999999888888 Q ss_pred HHHHHHHHHHHHHHHhCCCCCcc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcc--- Q lcl|Aclame:pro 327 KKELLDRLEKNIIIFGQGVNPES-QNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAI-RELLWFVCEYLKISGNKSY--- 401 (479) Q Consensus 327 ~~~~~~~l~~~i~~~s~~~~~~~-~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l-~~~~~li~~~~~~~~~~~~--- 401 (479) +..+.+.+.+.|....+.|-... ++++++|-.+.++........+...+..|...+ ..+++..+...-..+..+. T Consensus 348 ~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~av~~G~i~~p~~ 427 (530) T protein:vir:38 348 YSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAYFMGRRKFVASRQACQMFLCWLEEAIVRRVVTLPSK 427 (530) T ss_pred HHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCccCCCC Confidence 89999888888877666663322 345666777888888888888877777666543 4444433332222232221 Q ss_pred ---cc-----ceeeEEeC--CCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhcc- Q lcl|Aclame:pro 402 ---DY-----KTVQITFN--HSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLI- 468 (479) Q Consensus 402 ---~~-----~~i~i~f~--~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~- 468 (479) ++ ....+.|. .....|....+++.... +|+.|.+..+...| .|+++.++++.+|++...+..=.. T Consensus 428 ~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G--~D~~~v~~q~a~e~~~~~~~Gl~~~ 505 (530) T protein:vir:38 428 ARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRG--DDYQEIFAQQVRESMERRAAGLNPP 505 (530) T ss_pred CCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcC--CCHHHHHHHHHHHHHHHHHcCCCCC Confidence 11 12346663 33335777767766554 78999999999987 489999999998887654431000 Q ss_pred -----------CCCCCCCcCCC Q lcl|Aclame:pro 469 -----------PNNQDGVIDET 479 (479) Q Consensus 469 -----------~~~~~~~~det 479 (479) ...++...|++ T Consensus 506 ~~~~~~~~~~~~~~~~~~~d~~ 527 (530) T protein:vir:38 506 AWAAAAFEAGVKKSNEEEQDGA 527 (530) T ss_pred CCcccccCCCCCCCCCCCCCCC Confidence 00111111111 No 101 >protein:vir:105429 Length: 708 # NCBI annotation: gene 3 protein # Family: family:all:487 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958179;genbank:gi:41057281;genbank:GeneID:2716676 Probab=99.51 E-value=3.3e-13 Score=89.02 Aligned_cols=459 Identities=12% Similarity=0.068 Sum_probs=207.9 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHH--HHHHh--ccCCcccccccccccccccccccccCcce Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQ--GEEYY--YGNTDVNNKRRYYLLDGAKVDDFTKVNNK 76 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~yy--~g~~~~~~~~~~~~~~~~~~~~~~~~~~r 76 (479) |++. +..+.. .+.+.+....+.+..-|... -.+|| .|+|-... ....+.+.++. ..+ -. T Consensus 1 m~~~--------~~~~~~----~~~~~~~~~~~~~~~~r~~~~~D~~f~~~~G~QW~~~-~~~~l~~~~q~--~gr--P~ 63 (708) T protein:vir:10 1 MAET--------LEKKHE----RIMLRFDRAYSPQKEVREKCIEATRFARVPGGQWEGA-TAAGTKLDEQF--EKY--PK 63 (708) T ss_pred Cchh--------HHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCCCHH-HHHHHHHhhhh--cCC--Cc Confidence 2211 111111 11112221122112222222 23355 47763211 01111111110 011 13 Q ss_pred eecchHHHHHHHHHhhhhccCeee--cCC----chhHHH----HHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCC- Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVF--NAD----DDNLTK----LLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINR- 144 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~--~~~----~~~~~~----~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~- 144 (479) +.+|.++.+|+.++++-..+.+.+ .+. +.+..+ +++.+. .++.+.....+..+++++|.+|+.+..|. T Consensus 64 ~~~N~i~~~v~~v~g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~d~i~~G~Gw~~~~~d~~ 143 (708) T protein:vir:10 64 FEINKVATELNRIIAEYRNNRITVKFRPGDREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLV 143 (708) T ss_pred eEEcchHHHHHHHHHHHHhCCcceEEEcCCCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhhcccceeeeeeccc Confidence 678999999999999998887654 322 223333 344443 47899999999999999999999885531 Q ss_pred --C------CceEEEE-Ecc-ceeEEEEcCCCCC----ceEE-EEEEEeee--------------------------ccc Q lcl|Aclame:pro 145 --K------GEFKYVI-IPA-EEAIPIWDSKRQR----ELVA-FIRFYYIE--------------------------DID 183 (479) Q Consensus 145 --~------~~~~i~~-~~p-~~~~~~~d~~~~~----~~~~-~i~~~~~~--------------------------~~~ 183 (479) . .++++.. .+| ..++ ||+.... ...+ +++.|-.. ... T Consensus 144 ~e~d~~~~~~~i~i~~~~~p~~~v~--~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~~p~~a~~~~d~~~~~~~~~~~~~ 221 (708) T protein:vir:10 144 NEYDPMDDRQRIAIEPIYDPSRSVW--FDPDAKKYDKSDALWAFCMYSLSPEKYEAEYGKKPPTSLDVTSMTSWEYNWFG 221 (708) T ss_pred cccCCCCCccccceEEeecchhhcc--cCccccccChhhhhhhhhccCCCHHHHHHhCCCCcccccccccCCCccccccC Confidence 1 1233322 334 2332 4433210 0011 11111110 000 Q ss_pred CceEEEEEEEeCCcEEE----EEEcCCcccccccccc------------------------ccccccccccccccccccc Q lcl|Aclame:pro 184 GNKIKRVEYYTENDITY----FIERGNSFIQEFLYDE------------------------YGKMTDIQEGHFRINNKEQ 235 (479) Q Consensus 184 ~~~~~~~~~y~~~~i~~----~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 235 (479) .+.+...++|....... +....++......... ...+.............+- T Consensus 222 ~d~v~v~ey~~r~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~le~~~~~ 301 (708) T protein:vir:10 222 ADVIYIAKYYEVRKESVDVISYRHPITGEIATYDSDQVEDIEDELAIAGFHEVARRSVKRRRVYVSVVDGDGFLEKPRRI 301 (708) T ss_pred CCceEEEEeeeEEEEEEEEEEEecCCCCceeeecchhhhhHHHHHHhcccchhheeeeeeEEEEEEeecchhhhccCCCC Confidence 12334445544332211 1111111110000000 0000111122222345667 Q ss_pred cccccceEEecCC-------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchh-hHHHHhhcccce Q lcl|Aclame:pro 236 GWGKVPFIPFKNN-------EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQ-EFIDNIRYYKSI 307 (479) Q Consensus 236 ~~g~vPvv~~~n~-------~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~-~~~~~~~~~~~~ 307 (479) +++.+|+|++.-. ..+.|.+.++++.++.+|...|.+...+........++......... +........... T Consensus 302 p~~~fP~vP~~g~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~ 381 (708) T protein:vir:10 302 PGEHIPLIPVYGKRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEARNKKRPAF 381 (708) T ss_pred CCCceeeEEEeeeeeccCCCcccceeecccchhHHHHHHHHHHHHHHHHhcCCcccccChhhhhhHHHHHhhccccchhh Confidence 7888999987532 12247788999999999999999998887776654443221111111 111111111110 Q ss_pred -e----cCCCC-------cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 308 -K----VDGGG-------GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTE 375 (479) Q Consensus 308 -~----~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~ 375 (479) . ....| .......+.-..++...++.....|-.+++..+...+..+|.||+||..+-........... T Consensus 382 ~~~~~~~~~~G~~~~~~~~~~~~q~~~~~~~~~~l~q~~~~~i~~vsG~~~~~lG~~sn~SG~aI~~rq~qg~~~l~~~~ 461 (708) T protein:vir:10 382 LPLREVRDKSGNIIAGATPAGYTQPAVMNQALAALLQQTSADIQEVTGGSQAMQQMPSNIAQETVNNLMNRADMASFIYL 461 (708) T ss_pred hccccccccccccccccCCccccCCccchHHHHHHHHHHHHHHHHHhCcChhHccCccchHHHHHHHHHHHHHHHHHHHH Confidence 0 01111 11222333334567777888888888888877666665667899999998888888888888 Q ss_pred HHHHHHHHHHHHHHHHHHHhc----------CCC-c----------cc---------------cceeeEEeCCCCCCCHH Q lcl|Aclame:pro 376 KKFKKAIRELLWFVCEYLKIS----------GNK-S----------YD---------------YKTVQITFNHSMIINEA 419 (479) Q Consensus 376 ~~~~~~l~~~~~li~~~~~~~----------~~~-~----------~~---------------~~~i~i~f~~~~p~d~~ 419 (479) ..+..+.++..++++.+.... +.. . .+ ..+|.|.=.+..+.-.. T Consensus 462 Dnl~~~~~~~g~~lL~li~~~y~~er~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~yDv~i~~~p~~~s~r~ 541 (708) T protein:vir:10 462 DNMAKSLKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTARRD 541 (708) T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceEEecceeccCCCcceeeeeccceeeEEEEEecccCchhHHH Confidence 888888877777766654431 110 0 00 01223333344444455 Q ss_pred HHHHHHHHHhccCChH---H------HHHhCCCCCCHHHHHHHHHHHH---------------------HHHH-hhhhcc Q lcl|Aclame:pro 420 EKIDMAAKSTGIVSDE---T------IVSNHPWVEDVNDELERLKKQE---------------------DTQK-EYDDLI 468 (479) Q Consensus 420 e~a~~~~k~~g~is~e---t------~~~~l~~~~d~~~El~~i~~E~---------------------~~~~-~~~~~~ 468 (479) +.++.++.+.+.++.. + +++.+. +...++-+++|.+.. +++. ..+... T Consensus 542 ~~~~~l~qll~~~~p~~~~~~~~~~~~l~~~D-~p~~~ei~erir~~~~~~~~~~~~~~ee~q~~~~~q~~~q~q~~~~~ 620 (708) T protein:vir:10 542 ATVSVLTNVLSSMLPTDPMRPAIQGIILDNID-GEGLDDFKEYNRNQLLISGIAKPRNEKEQQIVQQAQMAAQSQPNPEM 620 (708) T ss_pred HHHHHHHHHHHhcCCCchhhHHHHHHHHHhcC-CcChHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHH Confidence 6666666654433321 1 122222 122222233332210 0000 000000 Q ss_pred -CCC---------CCCCcCCC Q lcl|Aclame:pro 469 -PNN---------QDGVIDET 479 (479) Q Consensus 469 -~~~---------~~~~~det 479 (479) ..+ .....-++ T Consensus 621 ~e~qa~~~~~qAe~~ka~a~a 641 (708) T protein:vir:10 621 VLAQAQMVAAQAEAQKATNET 641 (708) T ss_pred HHHHHHHHHHHHHHHHHHHHH Confidence 000 00000001 No 102 >protein:vir:3520 Length: 720 # NCBI annotation: P19 # Family: family:all:487 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050980;genbank:gi:9633566;genbank:GeneID:1262313 Probab=99.49 E-value=4.8e-13 Score=88.13 Aligned_cols=453 Identities=11% Similarity=0.028 Sum_probs=204.2 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHH---HHHHhhHHH--HHHHHHHhc--cCCcccccccccccccccccccccC Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEH---YILKHRPEK--YKQGEEYYY--GNTDVNNKRRYYLLDGAKVDDFTKV 73 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~--~~~~~~yy~--g~~~~~~~~~~~~~~~~~~~~~~~~ 73 (479) |++... ..+.++... ..+.+..-| ...-.+||. |++-... .....+ .......+| T Consensus 1 ma~~~~---------------~~l~~~~~~~~~~~~~~~~~r~~~~~d~~f~~~~G~QW~~~--~~~~~~-~~l~~~~~P 62 (720) T protein:vir:35 1 MAETLQ---------------KRHEQIMRKFDRAHSPQEAVREKCLEATRFARVPGGQWEGA--TAAGSE-LGKHFEKYP 62 (720) T ss_pred CchHHH---------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCCCCCCHH--HHHHHH-HHHhhCCCC Confidence 332211 112222221 111111122 223456665 6652110 000000 000111222 Q ss_pred cceeecchHHHHHHHHHhhhhccCeee--cCC----chhHHH----HHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEe Q lcl|Aclame:pro 74 NNKAINNYHKLLVDQKVGYSVGNPIVF--NAD----DDNLTK----LLNDLL-GEEFDDTITELYLNASNKGVEWLHPYI 142 (479) Q Consensus 74 ~~ri~~n~~~~iv~~~a~~l~g~~~~~--~~~----~~~~~~----~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~ 142 (479) .+.+|.++.+|+..+++...+.+.+ .+. +.+..+ +++.+. .|+.+.....+..+++++|.+|+.|.. T Consensus 63 --~~~~N~i~~~v~~v~g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~v~~ 140 (720) T protein:vir:35 63 --KFEINKISTELNRIISEYRHNRITVKFRPGDKTASEALANKLNGLFRADYEETDGGEACDNAFDDGSTGGFGCFRLTT 140 (720) T ss_pred --eEEEccHHHHHHHHHhHHHhCCCceEEEcCCCcchHHHHHHHHHHHHHHHHhcCchHHHhHHHHHhhhccceeEEeee Confidence 3567999999999999997776543 332 223233 334443 478888899999999999999999976 Q ss_pred CC----C-----CceEEEEE-cc-ceeEEEEcCCCCC----ceE-EEEEEEee-------------------------ec Q lcl|Aclame:pro 143 NR----K-----GEFKYVII-PA-EEAIPIWDSKRQR----ELV-AFIRFYYI-------------------------ED 181 (479) Q Consensus 143 d~----~-----~~~~i~~~-~p-~~~~~~~d~~~~~----~~~-~~i~~~~~-------------------------~~ 181 (479) |- + +.+++..+ +| ..++ ||+.... ... .+++.|-. .. T Consensus 141 d~~~~~d~~~~~~~i~i~~v~~~~~~v~--~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~d~ 218 (720) T protein:vir:35 141 NLVNALDPMDERQRICLEPIYDPARSVW--FDPDAKKYDKSDAEWAFCMYSLSAEKYKAEYNKDPATLMSGIERSWDYDW 218 (720) T ss_pred cccccCCCCcccceeeEecccCchhhee--ecccccccChhhhhhhhhhcCCCHHHHHHhCCCccccccccccccccccc Confidence 42 1 12334332 22 3333 4543211 011 11212211 00 Q ss_pred ccCceEEEEEEEeCCcEEE--EE--EcCCccccccccc------------------------cccccccccccccccccc Q lcl|Aclame:pro 182 IDGNKIKRVEYYTENDITY--FI--ERGNSFIQEFLYD------------------------EYGKMTDIQEGHFRINNK 233 (479) Q Consensus 182 ~~~~~~~~~~~y~~~~i~~--~~--~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~ 233 (479) .+.+.+..+++|....+.. +. ...++........ ....+..+.......... T Consensus 219 ~~~~~v~i~E~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~~~g~~~l~~~~ 298 (720) T protein:vir:35 219 YDVDVVYIAKYYEVKKESVDVVSFQNPLTSETVTYDSDQLELVEDELADIGFIEAARRTIKRRRVYVSVVDGEGFLEKAQ 298 (720) T ss_pred cCCCceEEEEeeEEEEEEEEEEEeecCCCCCeeecCCccHHHHHHHHhhhccccccccceeEEEEEEEeeccchhcccCC Confidence 1123345556655443211 11 1111111000000 000000111112223345 Q ss_pred cccccccceEEecCCC-------CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcc-- Q lcl|Aclame:pro 234 EQGWGKVPFIPFKNNE-------KCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYY-- 304 (479) Q Consensus 234 ~~~~g~vPvv~~~n~~-------~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~-- 304 (479) +-+++.+|+|+|.-.+ ...|.+.++++.++.+|...|.+.+.+... +...-.|.. ....++....... T Consensus 299 ~~p~~~fP~vP~~g~r~~~d~~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~--~~~~~~~a~-~~~~~~~~~~a~~~~ 375 (720) T protein:vir:35 299 RIPGEHIPLIPVYGKRWFIDDIERVEGHIAKAMDAQRLYNLQVSMLADSATQD--TGSIPIVGK-SQIKTLEKYWANRNK 375 (720) T ss_pred CCCCCccceEEEEeeeeccCCCcccceeeecchhHHHHHHHHHHHHHHHHHcC--CccccccCc-chHHHHHHHhhcccc Confidence 5677889999875321 124778899999999999999999888543 333333322 2233333222111 Q ss_pred --cce-ec----CCC-------CcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 305 --KSI-KV----DGG-------GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLK 370 (479) Q Consensus 305 --~~~-~~----~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k 370 (479) .+. .+ ... +.+.+.....-..+....++.-...|-.+++..+-..+..+|.||+|+..+-...... T Consensus 376 ~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGi~~~~lG~~sn~SG~Ai~~rq~qg~~~ 455 (720) T protein:vir:35 376 NRPAFLPLNEIVDKQGNIIAPPTPVGYTQPQPLNQAMAALLQQTGADIQEVTGSSQAMQPMPSNIAKETVNHLMHRSDMS 455 (720) T ss_pred ccccccccccccccCcccccCCCcccccCCCCCchHHHHHHHHHHHHHHHHhCCChHHcCcccchHHHHHHHHHHHHHHH Confidence 000 01 111 1233333333345566777777788888887776666666789999999887777777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----------CC--Cc-c-------------------cc----ceeeEEeCCCC Q lcl|Aclame:pro 371 CSKTEKKFKKAIRELLWFVCEYLKIS----------GN--KS-Y-------------------DY----KTVQITFNHSM 414 (479) Q Consensus 371 ~~~~~~~~~~~l~~~~~li~~~~~~~----------~~--~~-~-------------------~~----~~i~i~f~~~~ 414 (479) .......+..+.++..++++.+.... +. .+ . +. .+|.+.=.+.. T Consensus 456 ~~~~~Dnl~~~~~~~g~~lL~lI~~~y~~er~~RI~~ed~~~~~v~~n~~~~d~~~g~~v~~NDi~~g~yDv~v~~~p~~ 535 (720) T protein:vir:35 456 SFIYLDNMAKSLKRAGEVWLSMAREVYGSDRQVRIVNADGTDDIALMSVVINDNQTGQVVAMNDLSSGRYDVTVDVGPSY 535 (720) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceEeechhhhccCCCceeeeecceeeeeEEEEecccCc Confidence 77777777777776666665543321 11 00 0 00 12222223344 Q ss_pred CCCHHHHHHHHHHHhccCChHH---------HHHhCCCCCCHHHHHHHHHHHHHHHH--------------hhhh----- Q lcl|Aclame:pro 415 IINEAEKIDMAAKSTGIVSDET---------IVSNHPWVEDVNDELERLKKQEDTQK--------------EYDD----- 466 (479) Q Consensus 415 p~d~~e~a~~~~k~~g~is~et---------~~~~l~~~~d~~~El~~i~~E~~~~~--------------~~~~----- 466 (479) +.-..+.++.++.+.+.++.+. .++.+++ ...++-.+++.+...... ...+ T Consensus 536 ~s~req~~~~m~qll~~~~p~~~~~~~~~~~ile~~d~-p~~~e~~erirk~~~~~~~~~~~~~e~qq~~a~~qq~~qq~ 614 (720) T protein:vir:35 536 TARRDATVSVLTNLLAGMLPQDPMRQVLQGIILDNMEG-EGLDEFKEYNRKQLLTQGVVKPRNTEEEQMVAQMIQQAQQP 614 (720) T ss_pred ccHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCc-hhHHHHHHHHHhhcchhcccCccChhHHHHHHHHHHHHHhH Confidence 4434455555655544333221 1222221 112222233322110000 0000 Q ss_pred -----ccCCCCCCC------------cCCC Q lcl|Aclame:pro 467 -----LIPNNQDGV------------IDET 479 (479) Q Consensus 467 -----~~~~~~~~~------------~det 479 (479) ......... ..++ T Consensus 615 ~~e~~~aqa~l~qaqae~~kaqa~~~~~qa 644 (720) T protein:vir:35 615 NAELVAAQGVLMQGQAEVQKAKNEELAIQV 644 (720) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 000000000 0000 No 103 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.49 E-value=5.7e-12 Score=82.23 Aligned_cols=426 Identities=12% Similarity=0.048 Sum_probs=215.9 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccc-cccccccccccccc---c--cccC-cceeecch Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVN-NKRRYYLLDGAKVD---D--FTKV-NNKAINNY 81 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~-~~~~~~~~~~~~~~---~--~~~~-~~ri~~n~ 81 (479) |+.+...+....... +-.....-|+|-.... .+............ . ..+. ..-...+| T Consensus 1 m~~~~~~~~a~~~~~---------------~~~~~~~~y~aa~~~~~~~~~~~~s~d~~~~~~~~~lr~RaRdl~rNn~~ 65 (495) T protein:vir:10 1 MNMTPSGYQSLASGL---------------LVPVGASAYEGASGGHRWQDIGDYGPDTAVASGIQTLRARSHHNVRNNPW 65 (495) T ss_pred CCcccccccccchhh---------------hhHHHhhhhhccccCcccCCCCCCChhHHHHHHHHHHHHHHHHHHhcChH Confidence 222222211111110 0011112243321110 00000000000000 0 0000 00013589 Q ss_pred HHHHHHHHHhhhhccCeeecC--Cchh----HHHHHHHHHh-------cCHHHHHHHHHHHHHhCCeEEEEEEeCC--CC Q lcl|Aclame:pro 82 HKLLVDQKVGYSVGNPIVFNA--DDDN----LTKLLNDLLG-------EEFDDTITELYLNASNKGVEWLHPYINR--KG 146 (479) Q Consensus 82 ~~~iv~~~a~~l~g~~~~~~~--~~~~----~~~~~~~~~~-------n~~~~~~~~~~~~~~~~G~~~~~v~~d~--~~ 146 (479) ++-+|+..+..+.|.+++... ++++ +..+|+.|-. .+|......+++..+..|.+|+...+.+ +| T Consensus 66 a~~av~~~~~~vVG~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g 145 (495) T protein:vir:10 66 ATNAVATWVAAAVGNGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEG 145 (495) T ss_pred HHHHHHHHHHhhcCCCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCC Confidence 999999999999999988654 4444 4445555643 2677788889999999999998876543 33 Q ss_pred ---ceEEEEEccceeE-EEEcC--CCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEE-cCCccccccccccccc Q lcl|Aclame:pro 147 ---EFKYVIIPAEEAI-PIWDS--KRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIE-RGNSFIQEFLYDEYGK 219 (479) Q Consensus 147 ---~~~i~~~~p~~~~-~~~d~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~-~~~~~~~~~~~~~~~~ 219 (479) .+++..++|+.+. +.-+. .+...+..+|.+ +..|..+ .+.++..+--..+.. ....+ T Consensus 146 ~~~~~~lqliepd~l~~~~~~~~~~~g~~i~~GIe~----d~~Gr~v-aY~i~~~hpgd~~~~~~~~~~----------- 209 (495) T protein:vir:10 146 LSVPLQLQIIEPDMLASDIPDETLPSGGYVKGGIRF----SNGGKRK-AYCFYRNHPAESSLIGDPVDT----------- 209 (495) T ss_pred CccceEEEEechhhcCCCCCCCCCCCCCEEEeceEE----CCCCceE-EEEEeecCCCcccccccccce----------- Confidence 3689999999974 32221 223345666643 2233322 122221110000000 00000 Q ss_pred cccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeec-CCccchhh-- Q lcl|Aclame:pro 220 MTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKE-YPGTSLQE-- 296 (479) Q Consensus 220 ~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g-~~~~~~~~-- 296 (479) .-++. ...-|.| |. ......|.|.|..+..| ..++.............+.-...++. .+.....+ T Consensus 210 -~rvpA-----~~vlH~f---~~--r~gQ~RGis~la~i~~l-~~l~~y~dael~~a~i~A~~~~fi~~~~~~~~~~~~~ 277 (495) T protein:vir:10 210 -VWIKA-----EHVLHVT---VL--TVRSDAGAPWFQLLLRL-NELDQYEDAELVRKKTAALFAAFIQEATADSTGGPTI 277 (495) T ss_pred -eeech-----hheEecc---cc--CCCcccCcchhHHHHHH-HHhhHHHHHHHHHHHHhhhheeeeecCCCcccccccc Confidence 00000 1122332 10 12334588988877764 44444444333333333333333332 11111000 Q ss_pred ----------HHHHhhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCc-ccccccccHHHHHHHHH Q lcl|Aclame:pro 297 ----------FIDNIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPE-SQNTGDKSGVALKFLYS 365 (479) Q Consensus 297 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~-~~~~g~~Sg~Ai~~~~~ 365 (479) ....+..+.+..+..+.++++.+++-+...+..+...+.+.|....+.|-.. .++++++|-.++++... T Consensus 278 ~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~ 357 (495) T protein:vir:10 278 GQPKRSKGGKRITGLNPGTLQYLQPGQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLL 357 (495) T ss_pred CccccccCcccceecCCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHH Confidence 1123455667778888999999988788888888888888776666655322 23445566777887777 Q ss_pred HHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhcCCCccc-c-----ceeeEEeCCC--CCCCHHHHHHHHHHH--hccCC Q lcl|Aclame:pro 366 LLDLKCSKTEK-KFKK-AIRELLWFVCEYLKISGNKSYD-Y-----KTVQITFNHS--MIINEAEKIDMAAKS--TGIVS 433 (479) Q Consensus 366 ~l~~k~~~~~~-~~~~-~l~~~~~li~~~~~~~~~~~~~-~-----~~i~i~f~~~--~p~d~~e~a~~~~k~--~g~is 433 (479) .....+...+. .+-. ..+.+++..+...-..|..+.. + ....+.|..+ .-.|....+++.... +|+.| T Consensus 358 e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s 437 (495) T protein:vir:10 358 EFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAVVIPDYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAP 437 (495) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCCC Confidence 77777766554 4444 3344555544443344433221 1 1245667433 335777777766654 79999 Q ss_pred hHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhc---cCC--C-----CCCCcCCC Q lcl|Aclame:pro 434 DETIVSNHPWVEDVNDELERLKKQEDTQKEYDDL---IPN--N-----QDGVIDET 479 (479) Q Consensus 434 ~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~---~~~--~-----~~~~~det 479 (479) .+..+...| .|+++.++++.+|++...+..=. .+. . +++..+++ T Consensus 438 ~~~~~a~~G--~D~~~v~~q~a~e~~~~~~~Gl~~~~~p~~~~~~~~~~~~~~~~~ 491 (495) T protein:vir:10 438 ISDKQAERG--YDMEELFDMISDANQLIDEYDLRLDSDPRYVNGSGAEQKSVMEAA 491 (495) T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCCccCCCCCCCCCC Confidence 999999987 48899999998888765544210 010 0 01111111 No 104 >protein:vir:105520 Length: 706 # NCBI annotation: phage portal protein # Family: family:all:487 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516189;genbank:gi:89885992;genbank:GeneID:3964380 Probab=99.47 E-value=1.4e-12 Score=85.52 Aligned_cols=457 Identities=10% Similarity=0.039 Sum_probs=206.3 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhh--HHHHHHHHHHh--ccCCcccccccccccccccccccccCcce Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHR--PEKYKQGEEYY--YGNTDVNNKRRYYLLDGAKVDDFTKVNNK 76 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~yy--~g~~~~~~~~~~~~~~~~~~~~~~~~~~r 76 (479) |++-. .+.+ ..+...+....+.+. +.+...-.+|| .|+|-... ....+.+.++. ..++ . T Consensus 1 m~e~~---~~~~---------~~~~~~~~~~~~~~~~~r~~~~~d~~f~~~~G~QW~~~-~~~~l~~~~q~--~grP--~ 63 (706) T protein:vir:10 1 MAESR---QKQH---------ERVMLRFDRAWSPQQVVREKCIEATRFVRVPGGQWEGA-TVAGTKLDEQF--EKYP--K 63 (706) T ss_pred CCcch---HHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCCHH-HHHHHHhhhhh--cCCC--c Confidence 33211 1111 111111221112111 12223344666 46662221 11111111111 0122 4 Q ss_pred eecchHHHHHHHHHhhhhccCeee--cC----CchhHHH----HHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCC- Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVF--NA----DDDNLTK----LLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINR- 144 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~--~~----~~~~~~~----~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~- 144 (479) +.+|..+.+|+..+++...+.+.+ .+ ++.+..+ +++.+. .++.+.....+..+++++|.+|+.+..|- T Consensus 64 ~~~N~i~~~v~~v~g~~~~nr~~~~v~P~~~~~d~~~Ae~l~~l~~~~~~~~~~~~a~s~Af~d~i~~G~G~~ev~~d~~ 143 (706) T protein:vir:10 64 FEINKVATELNRIISEYRNNRISVKFRPGDNAASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTTSFV 143 (706) T ss_pred eEecchHHHHHHHhhHHHhCCCceEEecCCCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCcceEEeeeccc Confidence 788999999999999998776554 32 1223333 344443 47899999999999999999999885441 Q ss_pred --------CCceEEEEE-ccceeEEEEcCCCC----CceEEE-EEEEeeec-------------------------ccCc Q lcl|Aclame:pro 145 --------KGEFKYVII-PAEEAIPIWDSKRQ----RELVAF-IRFYYIED-------------------------IDGN 185 (479) Q Consensus 145 --------~~~~~i~~~-~p~~~~~~~d~~~~----~~~~~~-i~~~~~~~-------------------------~~~~ 185 (479) ++.+++..+ +|.+. ++||+... ....++ .+.|...+ ...+ T Consensus 144 ~~~d~~~~~~~i~i~~v~~p~~~-v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~fp~~~~~~~~~~~~~~~~d~~~~d 222 (706) T protein:vir:10 144 NEYDPMDERQRIAVEPIYDPARS-VWFDPDAKKYDKSDALWAFCMYSVSLEKYQSEYDKAPTSLDRVGSVSWQYDWFTPD 222 (706) T ss_pred cccCCCCCCccceeeeeccchhc-eecCchhcccChhhcceEeeeecCCHHHHHHhcCCChhhhhhhccccccccccCCC Confidence 123444433 56532 23565321 111111 22111110 0011 Q ss_pred eEEEEEEEeCCcE----EEEEEcCCccccccccccc------------------------cccccccccccccccccccc Q lcl|Aclame:pro 186 KIKRVEYYTENDI----TYFIERGNSFIQEFLYDEY------------------------GKMTDIQEGHFRINNKEQGW 237 (479) Q Consensus 186 ~~~~~~~y~~~~i----~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~ 237 (479) .+...++|..... .+|.....+.......... ..+..+.......+..+-+. T Consensus 223 ~~~~~eyy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~g~~~l~~~~p~~~ 302 (706) T protein:vir:10 223 VVYIAKYYEVRKESVDVISYRQPLTQEIATYDSEQIADIQDELEQAGFEEIGRRSVKRRRIYVAVVDGDGFLEKPRRIPG 302 (706) T ss_pred cceecccccccceeEEEEEeeccccCCceeeccchhhhhHHHHhhCCchhhhhcccceeeEEEEeeccccccccCCCCCC Confidence 2233444443321 1111111110000000000 00000111111122334455 Q ss_pred cccceEEecCCC-------CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhccc----- Q lcl|Aclame:pro 238 GKVPFIPFKNNE-------KCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYK----- 305 (479) Q Consensus 238 g~vPvv~~~n~~-------~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~----- 305 (479) +++|+|++.-.+ ...|.+.++++.++.+|...|.+.+.+.....- .-.|. .++.+++........ T Consensus 303 ~~~P~vP~~g~r~~~d~~~~~~G~vr~~~d~Q~~~N~~~s~~~~~~~~~~~~--~~~~~-~~~i~~~~~~~~~~~~~~~~ 379 (706) T protein:vir:10 303 EHIPLIPVYGKRWFIDDVERVEGHIAKAMDPQRLYNLQVSMLADAAAQDPGQ--TPIVD-MEQIRGLEQHWEGRNRKRPA 379 (706) T ss_pred CccceEEEeeccccccccCcccceeccchhhHHHHHHHHHHHHHHHHhcCCc--ccccc-hhHHHHHHHHhhhccccccc Confidence 888998875422 234778899999999999999999887554432 22221 122222221111100 Q ss_pred ceecC----CCC-------cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 306 SIKVD----GGG-------GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKT 374 (479) Q Consensus 306 ~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~ 374 (479) .+.+. .+| ...+...+.-..++...++.....|..+++..+...+..+|.||+|+..+-.......... T Consensus 380 ~l~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vsGi~~~~lG~~sn~SG~Ai~~rq~qg~~~~~~~ 459 (706) T protein:vir:10 380 FLPLRTVTDKTGNVVAPANVAGYTQAPVLNQALAALLQQTSADIQEVTGSSQAMQQMPSNVARETVNSLLNRSDMASFIY 459 (706) T ss_pred chhcccccCCCCcccccccccccCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHcCCccchHHHHHHHHHHHHHHHHHHH Confidence 00010 111 1122222223345677788888888888887777766667899999999988888888888 Q ss_pred HHHHHHHHHHHHHHHHHHHHhc----------CCCcc----------------------cc----ceeeEEeCCCCCCCH Q lcl|Aclame:pro 375 EKKFKKAIRELLWFVCEYLKIS----------GNKSY----------------------DY----KTVQITFNHSMIINE 418 (479) Q Consensus 375 ~~~~~~~l~~~~~li~~~~~~~----------~~~~~----------------------~~----~~i~i~f~~~~p~d~ 418 (479) ...+..+.++..++++.+.... +.... +. .+|.|.=.+..+.-. T Consensus 460 ~Dnl~~~~~~~g~~lL~li~~~y~~~R~~RI~~ed~~~~~v~in~~~~d~~~G~~~~~nDi~~g~yDv~i~~~p~~~t~r 539 (706) T protein:vir:10 460 LDNMAKSLKRAGEIWLSMAREIYGSDREVRIVHEDGTDDIALMNAAVLDNQTGRVVALNDLSTGRYDVSVDVGPSYSARR 539 (706) T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCccceeeccceeccccCceeeeecceeeeEEEEEecccCcchHH Confidence 8888888888877766654421 11000 00 122222234444445 Q ss_pred HHHHHHHHHHhcc-CCh--HH------HHHhCCCCCCHHHHHHHHHHH----------------------HHHHHhhhhc Q lcl|Aclame:pro 419 AEKIDMAAKSTGI-VSD--ET------IVSNHPWVEDVNDELERLKKQ----------------------EDTQKEYDDL 467 (479) Q Consensus 419 ~e~a~~~~k~~g~-is~--et------~~~~l~~~~d~~~El~~i~~E----------------------~~~~~~~~~~ 467 (479) .+..+.++.+.+. .+. .+ +++.+.+ ...++-.++|++. +.+....+.. T Consensus 540 ~~~~~~m~el~~~~~p~~~~~~~l~~~~~~~~d~-p~~~e~~e~irk~~~~q~~~~~~~~~eq~~~~q~qq~q~~q~~~~ 618 (706) T protein:vir:10 540 DATVNALTQLLQGMLPQDPMRPALMGIIIDNMEG-EGLDDFKAFNRRQLLTQGIVKPRNQQEQAIVQQAQQAQATQPDPN 618 (706) T ss_pred HHHHHHHHHHHHhcCCcchhhHHHHHHHHhhcCc-cchHHHHHHHHHhhcccCCccccchhHHHHHHHHHHHHHHHHHHH Confidence 5566666655432 221 11 2232221 1111222232210 0000000000 Q ss_pred c-------C-CC--CCCCcCCC Q lcl|Aclame:pro 468 I-------P-NN--QDGVIDET 479 (479) Q Consensus 468 ~-------~-~~--~~~~~det 479 (479) + . .+ ......++ T Consensus 619 ~~~~~aq~~~~qA~~~k~~a~~ 640 (706) T protein:vir:10 619 MLLAQAQMVVAQAEAQKSQNET 640 (706) T ss_pred HHHHHHHHHHHHHHHHHHHHHH Confidence 0 0 00 00000111 No 105 >protein:vir:172 Length: 708 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112077;genbank:gi:13559867;genbank:GeneID:920970 Probab=99.47 E-value=1.1e-12 Score=86.26 Aligned_cols=459 Identities=12% Similarity=0.049 Sum_probs=202.4 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHh---hHHHHHHH-HHHhccCCcccccccccccccccccccccCcce Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKH---RPEKYKQG-EEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNK 76 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~-~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~r 76 (479) |++.-. .+ ...+...+......+ +....... .+||.|+|-... ....+.+.++.. .+ -. T Consensus 1 ma~~~~----~~--------~~~~~~r~~~~~~~~~~~r~~~~~d~~f~~y~G~Qw~~~-~~~~l~~~~q~~--~r--P~ 63 (708) T protein:vir:17 1 MAETLE----KK--------HERIMLRFDRAYSPQQEVREKCIEATRFARVPGGQWEGA-TAAGTKLDEQFE--KY--PK 63 (708) T ss_pred CchhHH----HH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCCCHH-HHHHHHhhhhhc--CC--Cc Confidence 222110 00 011111121111111 11111122 368999873211 011111111110 11 13 Q ss_pred eecchHHHHHHHHHhhhhccCeee--cCC----chhHHH----HHHHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeC-- Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVF--NAD----DDNLTK----LLNDLL-GEEFDDTITELYLNASNKGVEWLHPYIN-- 143 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~--~~~----~~~~~~----~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d-- 143 (479) +.+|.++.+|+.++++-..+.+.+ .+. +.+..+ +++.+. .|+.+.....+..+++++|.+|+.+..| T Consensus 64 ~~~N~i~~~i~~v~g~e~~nr~d~~v~p~~~~~d~~~Ae~l~~l~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~~~~d~~ 143 (708) T protein:vir:17 64 FEINKVATELNRIIAEYRNNRITVKFRPGDREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLV 143 (708) T ss_pred eEEcchHHHHHHHHhhHhhCCcceEEecCCCcchHHHHHHHHHHHHHHHHhcCchhHHhHHHHHhhhcccceeeeeeccc Confidence 678999999999999987776543 332 223333 334443 4789999999999999999999887432 Q ss_pred -CC------CceEEEEE--ccceeEEEEcCCCCCc----eE-EEEEEEee--------------------------eccc Q lcl|Aclame:pro 144 -RK------GEFKYVII--PAEEAIPIWDSKRQRE----LV-AFIRFYYI--------------------------EDID 183 (479) Q Consensus 144 -~~------~~~~i~~~--~p~~~~~~~d~~~~~~----~~-~~i~~~~~--------------------------~~~~ 183 (479) ++ .++.|..+ ++.+++ ||+..... .. .+++.|-. ...+ T Consensus 144 ~e~d~~~~~~~i~i~~~~~~~~~v~--~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~~~~~~ 221 (708) T protein:vir:17 144 NEYDPMDDRQRIAIEPIYDPSRSVW--FDPDAKKYDKSDALWAFCMYSLSPEKYEAEYGKKPPASLDVTSMTSWEYDWFD 221 (708) T ss_pred ccCCCCCCccccceEeeccchhhee--cCccccccChhhhhhhhhhccCCHHHHHHhCccccchhhhhhhhccccccccC Confidence 21 23444443 334554 56543110 00 01111110 0111 Q ss_pred CceEEEEEEEeCCcE--EEEE--EcCCc-cccccc-----------------------cccccccccccccccccccccc Q lcl|Aclame:pro 184 GNKIKRVEYYTENDI--TYFI--ERGNS-FIQEFL-----------------------YDEYGKMTDIQEGHFRINNKEQ 235 (479) Q Consensus 184 ~~~~~~~~~y~~~~i--~~~~--~~~~~-~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 235 (479) .+.+..+++|..... ..+. ...++ ...... ......+.............+- T Consensus 222 ~d~vrv~e~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~l~~~~~~ 301 (708) T protein:vir:17 222 ADVIYIAKYYEVRKESVDVISYRHPITGEIATYDSDQVEDIEDELAIAGFQEVARRSVKRRRVYVSVVDGDGFLEKPRRI 301 (708) T ss_pred CCeEEEEEEEEEeeeeeEEEEEecCccCceeeeCccchhhHHHHHHhcccccceeeeeeEEEEEEEeecccccccCCCCC Confidence 233444455432211 1111 11111 100000 0000011111222223345566 Q ss_pred cccccceEEecCCC---CC----CchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccch-hhHHHHhhc---- Q lcl|Aclame:pro 236 GWGKVPFIPFKNNE---KC----VSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSL-QEFIDNIRY---- 303 (479) Q Consensus 236 ~~g~vPvv~~~n~~---~g----~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~-~~~~~~~~~---- 303 (479) +++.+|+|++...+ .| .|.+.++++.++.+|...|.+...+.......+++........ ......... T Consensus 302 p~~~fP~vP~~g~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~a~~g~~~~~~~~~~~~~~~ 381 (708) T protein:vir:17 302 PGEHIPLIPVYGKRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEARNKKRPAF 381 (708) T ss_pred CCCccceEEEecccccccCCCcccchhhhchhHHHHHHHHHHHHHHHHHhcCCcceeechhhhhhhHHhhhhcccchhhh Confidence 77889998875321 22 3677899999999999999999888766554443321110000 011010000 Q ss_pred -------ccceecCCCC-cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 -------YKSIKVDGGG-GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTE 375 (479) Q Consensus 304 -------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~ 375 (479) +.+..+..++ .......+.-..++...++.....|-..++..+...+..+|.||+|+..+-........... T Consensus 382 ~~~~~~~~~~g~v~~~a~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGi~d~~~G~~sn~SG~Ai~~rq~qg~~~~~~~~ 461 (708) T protein:vir:17 382 LPLREVRDKYGNIIAGATPAGYTQPAVMNQALAALLQQTSADIQEVTGGSQAMQQMPSNIAQETVNNLMNRADMASFIYL 461 (708) T ss_pred hhhhccCCcccccccccCCcccCCCccccHHHHHHHHHHHHHHHHhcCCChHHccCccchHHHHHHHHHHHHHHHHHHHH Confidence 0000111111 11122222223567777888888888888877777776678999999988877777777777 Q ss_pred HHHHHHHHHHHHHHHHHHHhcC----------CC-cc----------c--------c-------ceeeEEeCCCCCCCHH Q lcl|Aclame:pro 376 KKFKKAIRELLWFVCEYLKISG----------NK-SY----------D--------Y-------KTVQITFNHSMIINEA 419 (479) Q Consensus 376 ~~~~~~l~~~~~li~~~~~~~~----------~~-~~----------~--------~-------~~i~i~f~~~~p~d~~ 419 (479) ..+..+.++..++++.+....- .. .. + . .+|.|.=.+..+.-.. T Consensus 462 Dnl~~~~~~~g~~lL~lI~~~y~~~R~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~~Dv~v~~~p~~~t~r~ 541 (708) T protein:vir:17 462 DNMAKSLKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTARRD 541 (708) T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecceeccCCCccceeeccceeeeeeEEEecccCchhHHH Confidence 7777777777666665543311 00 00 0 0 0122221223333233 Q ss_pred HHHHHHHHHhccCChH---H------HHHhCCCCCCHHHHHHHHHHHHH---------------------HH-Hh----- Q lcl|Aclame:pro 420 EKIDMAAKSTGIVSDE---T------IVSNHPWVEDVNDELERLKKQED---------------------TQ-KE----- 463 (479) Q Consensus 420 e~a~~~~k~~g~is~e---t------~~~~l~~~~d~~~El~~i~~E~~---------------------~~-~~----- 463 (479) +..+.++++.+.++.. + +++.+++ ...++-.++|.+... ++ .. T Consensus 542 ~~~~~l~qll~~~~~~~~~~~~~~~l~l~~~D~-p~~~ei~e~ir~~~~~~~~~~~~~~e~~q~~~q~qq~~q~q~~~~~ 620 (708) T protein:vir:17 542 ATVSVLTNVLSSMLPADPMRPAIQGIILDNIDG-EGLDDFKEYNRNQLLISGIAKPRNEKEQQIVQQAQMAAQSQPNPEM 620 (708) T ss_pred HHHHHHHHHHHhcCCccchhHHHHHHHHHhcCC-CChHHHHHHHHHHhhccccccCcchhhHHHHHHHHHHHHHHHHHHH Confidence 4455555543332211 1 2222221 112222222221110 00 00 Q ss_pred --hhhcc-C--CCCCCCcCCC Q lcl|Aclame:pro 464 --YDDLI-P--NNQDGVIDET 479 (479) Q Consensus 464 --~~~~~-~--~~~~~~~det 479 (479) ..... . .+.....-++ T Consensus 621 ~eaqa~~~~~qAe~~ka~aea 641 (708) T protein:vir:17 621 VLAQAQMVAAQAEAQKATNET 641 (708) T ss_pred HHHHHHHHHHHHHHHHHHHHH Confidence 00000 0 0000000001 No 106 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.46 E-value=9.1e-12 Score=81.12 Aligned_cols=429 Identities=9% Similarity=0.030 Sum_probs=234.7 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccc------cccccccccc-c--c-ccc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNN------KRRYYLLDGA-K--V-DDF 70 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~------~~~~~~~~~~-~--~-~~~ 70 (479) |-..=.. ++.+... |. .....+........+.|++-..-.. ++.....+.. . . .-. T Consensus 1 ~~r~~~~-~~~~dr~------------i~-~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~lr 66 (505) T protein:vir:96 1 MKRAEKK-PSLAQRM------------VN-WAWYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASLV 66 (505) T ss_pred CCCCccc-cchhhcc------------cc-hhhhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHHH Confidence 2222111 1122111 11 1111111122233345654321111 0100000000 0 0 000 Q ss_pred ccCc-ceeecchHHHHHHHHHhhhhc-cCeeecCC--------chhHH----HHHHHHHh---------cCHHHHHHHHH Q lcl|Aclame:pro 71 TKVN-NKAINNYHKLLVDQKVGYSVG-NPIVFNAD--------DDNLT----KLLNDLLG---------EEFDDTITELY 127 (479) Q Consensus 71 ~~~~-~ri~~n~~~~iv~~~a~~l~g-~~~~~~~~--------~~~~~----~~~~~~~~---------n~~~~~~~~~~ 127 (479) .++. .-...++++-+|+..+..+.| .+++..+. +++.+ ..|+.|-. .+|...+..+. T Consensus 67 ~RaRdL~rNn~~a~~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~ 146 (505) T protein:vir:96 67 QRAREQSINNPYAKRFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWM 146 (505) T ss_pred HHHHHHHhcChHHHHHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHH Confidence 0000 001358999999999999999 58876542 33333 44555532 14777778899 Q ss_pred HHHHhCCeEEEEEEeCCCC--ceEEEEEccceeEEEEcCC--CCCceEEEEEEEeeecccCceEEEEEEEeC--CcEEEE Q lcl|Aclame:pro 128 LNASNKGVEWLHPYINRKG--EFKYVIIPAEEAIPIWDSK--RQRELVAFIRFYYIEDIDGNKIKRVEYYTE--NDITYF 201 (479) Q Consensus 128 ~~~~~~G~~~~~v~~d~~~--~~~i~~~~p~~~~~~~d~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~--~~i~~~ 201 (479) +..+..|.+|+.......+ .+++..++|+.+-.-++.. ....+..+|++ +..|..+ .+.++.. +..+. T Consensus 147 r~~~~dGE~f~~~~~~~~~~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~----d~~Gr~~-aY~i~~~hPgd~~~- 220 (505) T protein:vir:96 147 ETLARDGEVLVREHRGYPNKWGYALQILECDRLDLNYNADLQNGNRIRMSIEL----DAWERPV-AYHLLVNHPGDNSY- 220 (505) T ss_pred HHHhhCCceEEEEeecCCCCcceEEEEechhhcCCCCCcccCCcCeEEeceEE----CCCCceE-EEEEeecCCCcccc- Confidence 9999999999888765433 3689999999975333221 12334555643 2233322 2222211 11110 Q ss_pred EEcCCccccccccccccccccccccccccccccccccccc---eEEecC-----CCCCCchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 202 IERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVP---FIPFKN-----NEKCVSDLTFYKSLIDIYDNNISTLA 273 (479) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vP---vv~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~~ 273 (479) .. ......+.+|| |+++.. ...|.|.|..++..+..++....... T Consensus 221 ~~---------------------------~~~~~~~~rvpa~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael 273 (505) T protein:vir:96 221 CY---------------------------HYAGQTYERVPADEIIHTFVPWRPHQNRGIPWTHASMVELHHIGEYRKSEM 273 (505) T ss_pred cc---------------------------ccccccccccCHhHhhhhhcccCCccccCcchHHHHHHHHHHHhHHHHHHH Confidence 00 00011223333 233332 23699999999999998888777766 Q ss_pred HHHHHhccceeeeecCCccch-------hhHHHHhhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 274 DNLDEIQEVIYVLKEYPGTSL-------QEFIDNIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVN 346 (479) Q Consensus 274 ~~~~~~~~p~l~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~ 346 (479) ......+.-..+++...+... ......+..+.+..+..+.++++.+++.+...+..+...+.+.|....+.|- T Consensus 274 ~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iaaglgi~y 353 (505) T protein:vir:96 274 IAAELGAKKVGFYEQDPEAYDQPPEDDQGEIVEEVEAGTYQLLPYGIRFKEHKIDHPHTNFGAFVKSSLRGVAAGMGPAY 353 (505) T ss_pred HHHHHhhhheeeeecCCccCCCccccccCccccccCCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCH Confidence 666665554444443221111 1112345567777788899999999988888899999998888877766663 Q ss_pred Ccc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccccc----eeeEEeCCCC--CCCH Q lcl|Aclame:pro 347 PES-QNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAI-RELLWFVCEYLKISGNKSYDYK----TVQITFNHSM--IINE 418 (479) Q Consensus 347 ~~~-~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l-~~~~~li~~~~~~~~~~~~~~~----~i~i~f~~~~--p~d~ 418 (479) ... ++++++|-.++++........+...+..|...+ +.+++..+..+-..|..+.... ...+.|..+- -.|. T Consensus 354 e~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP 433 (505) T protein:vir:96 354 NRLAHDLEGVNFSSLRSGELDERDLYKLLQFFVVTELLERVAGNLISMSLLTQALPLNMVDIDRLSQYAFQPRGWDWVDP 433 (505) T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCccchhhceeeeccCCccccCh Confidence 322 345667777888888888888888877776543 4455654544444444332211 2356674332 2577 Q ss_pred HHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhcc------------CCCCCCCcCC Q lcl|Aclame:pro 419 AEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLI------------PNNQDGVIDE 478 (479) Q Consensus 419 ~e~a~~~~k~--~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~------------~~~~~~~~de 478 (479) ...+++.... +|+.|.+..+...| .|+++.++++.+|++...+..-.. +..+.+.+|| T Consensus 434 ~Ke~~a~~~~i~~G~~t~~~~~a~~G--~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~d~ 505 (505) T protein:vir:96 434 AKDSKAHSESIKNRTRSRSSIIRAAG--DDPEDVFDEIAWEEQLMRDKGVNPTPPEQESKDATTDEEDDSASDD 505 (505) T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHcC--CCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 7777766554 79999999999987 489999999998887654432100 0111112222 No 107 >protein:vir:102668 Length: 547 # NCBI annotation: Hypothetical protein # Family: family:all:481 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024419;genbank:gi:48696640;genbank:GeneID:2948135 Probab=99.43 E-value=2e-11 Score=79.29 Aligned_cols=447 Identities=10% Similarity=0.037 Sum_probs=222.7 Q ss_pred cChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhcc-- Q lcl|Aclame:pro 19 ESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGN-- 96 (479) Q Consensus 19 ~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~-- 96 (479) .+...|.+..+.+ ..+|.+.....+++|+ +-+|++..+............+.+.++.-+.+...++.+|+.|++- T Consensus 1 ~~~~~l~~r~~~l-~~~R~~~e~~w~e~~~--~~lP~~~~~~~~~~~~~~~~~~~~~~i~dst~~~a~~~Las~L~~~lt 77 (547) T protein:vir:10 1 MENSKIVKRLDFL-KTDRKNVEQIWDCIRK--YIMPMRSDFFSDLRSEGSINWNQNREVFDSTAGDGLETLSSSLHGSLT 77 (547) T ss_pred CCHHHHHHHHHHH-HHHhhHHHHHHHHHHH--HhcccccccccCCCCCcccccccccccccchHHHHHHHHHHHHHHhhc Confidence 6667777777654 3345444444445544 2223322111111111111123445667788888888888877643 Q ss_pred C-----eeecCCc------hhHHHHH--------HHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCC--CceEEEEEcc Q lcl|Aclame:pro 97 P-----IVFNADD------DNLTKLL--------NDLLGEEFDDTITELYLNASNKGVEWLHPYINRK--GEFKYVIIPA 155 (479) Q Consensus 97 ~-----~~~~~~~------~~~~~~~--------~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~--~~~~i~~~~p 155 (479) | +++...+ .+....+ ..+..++|.....++.++..++|.+.+++..|++ +.++++.++. T Consensus 78 Pp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~i~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~d~~~~~~~r~~~~pl 157 (547) T protein:vir:10 78 SPATKWFELAFRDKELNSDDECRKWLENATHDVYSALQDSNFNLEANETYIDLCGYGNAIMVEEEDEDEEGSVVFQSSPI 157 (547) T ss_pred CCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEeccCCCCCCceeEEEeec Confidence 1 2233222 2233222 2344578999999999999999999888876643 6788999999 Q ss_pred ceeEEEEcCCCCCceEEEEEEEeeecc---------------------c-CceEEEEEEEeCCcEEEEEEcCCc-----c Q lcl|Aclame:pro 156 EEAIPIWDSKRQRELVAFIRFYYIEDI---------------------D-GNKIKRVEYYTENDITYFIERGNS-----F 208 (479) Q Consensus 156 ~~~~~~~d~~~~~~~~~~i~~~~~~~~---------------------~-~~~~~~~~~y~~~~i~~~~~~~~~-----~ 208 (479) .++++.-|.. .++..++|.++..-. + +.....+++++.-.... ....+. + T Consensus 158 ~~~~v~~d~~--G~v~~i~r~~~~t~~qi~~~fg~~~l~~~v~~~~~~~~~~~~~~~~v~~~v~~~~-~~~~~~~~~~~~ 234 (547) T protein:vir:10 158 QDSYFEEDSR--GQVVNFYRVFRWTPAQIYDRFGDEGTPEAIIKKAKEASNQAALKQEVVMCVFTRY-DKKQNRNAGTVL 234 (547) T ss_pred ceEEEeeCCC--cCeeeeeeeeeccHHHHHHhcCcccCCHHHHHHHhcCCCcccceEEEEEEEeecc-CCCCCcccccee Confidence 9988766543 455555554433110 0 11111222221100000 000000 0 Q ss_pred ccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 209 IQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVI 283 (479) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~ 283 (479) .....+... .+......... ..+.+|..+|++.+. ++.+|+|-.++..+-+..+|...-......+....|. T Consensus 235 ~~~~~p~~s-~~~e~~~~~~~--l~esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp 311 (547) T protein:vir:10 235 APTERPFGK-KWILKEGAVQL--GEEGGYYEMPAYAIRWRKSAGSQWGFGPSHLALPDVLTANRYVELVLRSSEKVIDPA 311 (547) T ss_pred eccccceeE-EEEEecCceee--eecCCcccCCeeeeeeeecCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCc Confidence 000000000 00011111111 122345667777654 3568999999999999999999999999999999998 Q ss_pred eeeecCCccchhhHHHHhhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHH Q lcl|Aclame:pro 284 YVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFL 363 (479) Q Consensus 284 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~ 363 (479) +.+...+.. . ..+...++++..++..+++.+....+.......++.++..|...-....+...+....||+.+... T Consensus 312 ~~v~~~g~~--~--~~~~~pgg~~~~~~~~~v~pl~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~~~~~~~TAtEV~~r 387 (547) T protein:vir:10 312 IMVTERGLI--S--DIDLGASGLTVVRDMESMKPFESRARFDVSSIQLTDLRSAVRRIYYVDQLQMKDSPAMTATEVQVR 387 (547) T ss_pred eeccccccc--c--cceecCCeeeecCCcccceeeecccchHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccHHHHHHH Confidence 765422111 1 123345666666666778878777777777788888888776544433333334455788887765 Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCcc--------ccceeeEEeCCCCCCCHHH-HH-------HHHH Q lcl|Aclame:pro 364 YSLLDLKCSKTEK-KFKKAIRELLWFVCEYLKISGNKSY--------DYKTVQITFNHSMIINEAE-KI-------DMAA 426 (479) Q Consensus 364 ~~~l~~k~~~~~~-~~~~~l~~~~~li~~~~~~~~~~~~--------~~~~i~i~f~~~~p~d~~e-~a-------~~~~ 426 (479) ...+.....-.-. .-.+.+.-++.-++.++...+..+. ....++|.+..++-+.... .+ +.+. T Consensus 388 ~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l~~~~~~~~~v~~is~Laraq~~~~~~~i~~~~~~v~ 467 (547) T protein:vir:10 388 YELMQRLLGPTLGRLENDFLSPMIQRTFNIRFRAGKLGELPSKLLESGKAAMDIVYTGPLSRAQKIDQAASIERWAGSTA 467 (547) T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHH Confidence 4444444322111 1112222222222333333333221 2345677777666654211 11 1222 Q ss_pred HHhcc-------CChHHHHHh----CCCCC----CHHHHHHHHHHHHHHHHhhhhcc--------CCCCCCCcCCC Q lcl|Aclame:pro 427 KSTGI-------VSDETIVSN----HPWVE----DVNDELERLKKQEDTQKEYDDLI--------PNNQDGVIDET 479 (479) Q Consensus 427 k~~g~-------is~et~~~~----l~~~~----d~~~El~~i~~E~~~~~~~~~~~--------~~~~~~~~det 479 (479) .++++ +....++.. +| ++ -.++|++++.++++++...++.. .....|.++.. T Consensus 468 ~laq~~P~vld~id~d~~~~~~a~~~G-vp~~~irs~eev~~~r~qr~~~~q~~~qaa~~~~~g~~m~~~~~~~a~ 542 (547) T protein:vir:10 468 QLAEINPEVLDIPDWDEMVRMLGSLLG-APQTLMRPKAKVTSIRKNRSQTQQKAEQAAIAEAEGNAMEAQGKGQAA 542 (547) T ss_pred HhhccChhhhhcCCHHHHHHHHHHHhC-CChhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc Confidence 22332 223333332 33 22 12467776666654322221111 11111211111 No 108 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.39 E-value=3.9e-11 Score=77.66 Aligned_cols=430 Identities=9% Similarity=-0.038 Sum_probs=227.1 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCC-ccccc----ccccccccccccc--cccCc-ceeecc Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNT-DVNNK----RRYYLLDGAKVDD--FTKVN-NKAINN 80 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~-~~~~~----~~~~~~~~~~~~~--~~~~~-~ri~~n 80 (479) |+.|+..+.-.++..-.+.. +.....+-|+|-. .-... ..+........-. ..++. .-.-.+ T Consensus 1 Mn~iDr~i~~~sP~~a~~R~----------~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~ 70 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRL----------AAREAIQAYEAARPGRTHKAKRQPLGADTSLQKSAVSMREQCRKLDEDHD 70 (548) T ss_pred CchHHhHhhhcchHHHHHHH----------HhHHHhccccccCccccccccCCCCChHHHHHHHHHHHHHHHHHHHhcCh Confidence 55565555544443222111 1111223345432 11100 0000000000000 00000 001358 Q ss_pred hHHHHHHHHHhhhhcc-CeeecC----Cc--------hhHHHHHHHHHh-------cCHHHHHHHHHHHHHhCCeEEEEE Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGN-PIVFNA----DD--------DNLTKLLNDLLG-------EEFDDTITELYLNASNKGVEWLHP 140 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~-~~~~~~----~~--------~~~~~~~~~~~~-------n~~~~~~~~~~~~~~~~G~~~~~v 140 (479) |++-+|+..++.+.|. ++.+.+ .+ +.+..+|+.|-. .+|......+++..++.|.+|+.. T Consensus 71 ~a~~av~~~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~ 150 (548) T protein:vir:95 71 LVTGLLDRLEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQK 150 (548) T ss_pred HHHHHHHHHHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEe Confidence 8999999999999984 443332 22 123335556643 258888888999999999999988 Q ss_pred EeCCCC--------ceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEe--CCcEEEEEEcCCcccc Q lcl|Aclame:pro 141 YINRKG--------EFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYT--ENDITYFIERGNSFIQ 210 (479) Q Consensus 141 ~~d~~~--------~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~--~~~i~~~~~~~~~~~~ 210 (479) .++..+ .+++..++|+.+-.-++.. ...+..+|.+ +..|..+ .+.++. ++..+... ....+. T Consensus 151 ~~~~~~~~~~g~~~~~~lqliepd~l~~~~~~~-~~~i~~GIE~----D~~Grp~-aY~i~~~hPgd~~~~~-~~~~~~- 222 (548) T protein:vir:95 151 LMGRVPNYTFATSVPFALELLEPDYLPFSYNNL-SKGIVQGIER----DTWRRKR-AYHLLKDHPGNLQTLG-GSLAVK- 222 (548) T ss_pred eecccccccCCcccceEEEEechhhcCCCCCCC-CCceeeeeEE----CCCCceE-EEEEeecCCCcccccc-ccccee- Confidence 775532 2589999999974323322 2345556643 2233322 222222 11111100 000000 Q ss_pred ccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCC Q lcl|Aclame:pro 211 EFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYP 290 (479) Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~ 290 (479) .++ -...-|.|... ......|.|.|..++..+..++.............+.-..+++... T Consensus 223 -----------rvp-----A~~VlHif~~~----r~gQ~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~fi~~~~ 282 (548) T protein:vir:95 223 -----------RVE-----AERIIHIAYRK----RIGQNRGVPMLHAVLIRLADLKDYEESERVAARISAALAMYIKKGN 282 (548) T ss_pred -----------eec-----hhHheeccccc----CCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCC Confidence 000 01112222110 0123459999999999988888877776666665554444444321 Q ss_pred ccc--------hhhHHHHhhcccce-ecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccc-ccccccHHHH Q lcl|Aclame:pro 291 GTS--------LQEFIDNIRYYKSI-KVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQ-NTGDKSGVAL 360 (479) Q Consensus 291 ~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~-~~g~~Sg~Ai 360 (479) ... .......+..+.++ .+..+.++++.+.+.+...+..+...+.+.|.....+|-.... +++ .|-.++ T Consensus 283 ~~~~~~~~~~~~~~~~~~~~pG~iv~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~s-~nYSS~ 361 (548) T protein:vir:95 283 PDSYTVEPGKDRKNRTIPIAPGMVFDDLEPGEDVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAYD-GTYSAQ 361 (548) T ss_pred CccccCCCCcccccccccccCCccccccCCCceeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccc-hhHHHH Confidence 111 00111224445555 3677889999998878888899999888888777666632222 232 467778 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccc-----cceeeEEeCCCC--CCCHHHHHHHHHHH--hc Q lcl|Aclame:pro 361 KFLYSLLDLKCSKTEKKFKKAIRE-LLWFVCEYLKISGNKSYD-----YKTVQITFNHSM--IINEAEKIDMAAKS--TG 430 (479) Q Consensus 361 ~~~~~~l~~k~~~~~~~~~~~l~~-~~~li~~~~~~~~~~~~~-----~~~i~i~f~~~~--p~d~~e~a~~~~k~--~g 430 (479) ++.+..........+..|...+-+ +++..+...-..|..+.. ...+.+.|..+- -.|....+++...+ +| T Consensus 362 R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~wle~a~l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~G 441 (548) T protein:vir:95 362 RQELVEGWLGYDLLQHEFIDYWCRPVYRSWLQMYLLARKERLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAG 441 (548) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHcC Confidence 877777777777777666654433 555544443344433221 123567784332 35777777766654 68 Q ss_pred cCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhcc---CC--CCCCCcCCC Q lcl|Aclame:pro 431 IVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLI---PN--NQDGVIDET 479 (479) Q Consensus 431 ~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~---~~--~~~~~~det 479 (479) +.|.+..+...| .|+++.++++.+|.+...+..=.. +. ...+..+.+ T Consensus 442 l~T~~~~~a~~G--~D~~ev~~q~a~E~~~~~~~GL~~~~~~~~~~~~~~~~~~ 493 (548) T protein:vir:95 442 FADEAEVARARG--RDPRELKKSRETEIKANRAAGLVFSSDAYHQLVKSGMDPV 493 (548) T ss_pred CCCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccCCC Confidence 999999999987 488998999988887654432111 00 001111111 No 109 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.36 E-value=3.9e-12 Score=83.12 Aligned_cols=382 Identities=13% Similarity=0.101 Sum_probs=190.1 Q ss_pred HHHHHHHHHHhccC-Cccc--cccccc--ccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchh---HH Q lcl|Aclame:pro 37 PEKYKQGEEYYYGN-TDVN--NKRRYY--LLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDN---LT 108 (479) Q Consensus 37 ~~~~~~~~~yy~g~-~~~~--~~~~~~--~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~---~~ 108 (479) ....+-+...-.|- +.-. ...... ........... -.+.+++.+|+.++.-++.+++.+++++.+ .. T Consensus 1 ~~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~a~Y-----~~~~l~~~~vd~~a~d~~r~~~~i~~~d~~~~~~~ 75 (437) T protein:vir:52 1 MKFFDGIKSLALKLGSKQEQTYYSPSLSLTDDLVQLEALW-----RDNWIANKVCIKRPEDMVRNWREIYSNDLNSKQLD 75 (437) T ss_pred CchhhhhHhHHhcCCCccccceeecCccccccHHHHHHHH-----HhCchhhHHhhcchHHhhcCCceEecCCCCHHHHH Confidence 11111111111110 0000 000000 00000000000 135788999999999999999999886432 22 Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCC---------Cce-EEEEEccceeEEEEc-CCCCCceEEE-EEE Q lcl|Aclame:pro 109 KLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRK---------GEF-KYVIIPAEEAIPIWD-SKRQRELVAF-IRF 176 (479) Q Consensus 109 ~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~---------~~~-~i~~~~p~~~~~~~d-~~~~~~~~~~-i~~ 176 (479) .+...|..=++...+.++.+.+-.||.+++++..+.. |.+ .+.+++|.++.|..- ..+...+-++ ..+ T Consensus 76 ~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~~~~dp~s~~fg~p~~ 155 (437) T protein:vir:52 76 LFTKFERSLKLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGTKDDDVLSPNFGRYSE 155 (437) T ss_pred HHHHHHHhhcHHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhccccccccccccccccCcceE Confidence 3333444447888888999999999999999877542 222 255555555543211 1111111100 111 Q ss_pred EeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHH Q lcl|Aclame:pro 177 YYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLT 256 (479) Q Consensus 177 ~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~ 256 (479) |.+... +. ...+.+.++.+|... .+| ...+..+|.|.++ T Consensus 156 y~v~~~-~~----~~~iH~SRii~~~~~----------------------------------~~~--~~~~~~~G~s~le 194 (437) T protein:vir:52 156 YSILGG-SQ----SITVHHSRLIILNAN----------------------------------DAP--LSDNDIWGVSDLE 194 (437) T ss_pred EEEecC-Cc----ceeEccceeEEecCc----------------------------------cCC--CccccccCCchHH Confidence 221100 00 001112222222110 012 1123456999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc---cchhh----HHH---Hhh-cccceecCCCCcceeeecCCCHH Q lcl|Aclame:pro 257 FYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG---TSLQE----FID---NIR-YYKSIKVDGGGGVDKLEINIPVE 325 (479) Q Consensus 257 ~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~---~~~~~----~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~ 325 (479) .+.+-+..++.+.-.....+.....+.+.+.|... ...++ ... ..+ ..+++.++.+.+.+.+ +.+.. T Consensus 195 ~~~~~i~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~--~~~~s 272 (437) T protein:vir:52 195 KIIDVLKRFDSASVNVGDLIFESKIDIFKIAGLSDKIAAGMENEVASVISAVQEIKSATNSLLLDAENEYDRK--ELTFT 272 (437) T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCceecchHHHHhcCCcHHHHHHHHHHHHHhcCCCceEEEcCCcceEEE--ecCcC Confidence 99999999998888877777777777666654311 11111 111 112 2345556655554444 45566 Q ss_pred HHHHHHHHHHHHHHHHhCCCCCccccc---ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCcc Q lcl|Aclame:pro 326 AKKELLDRLEKNIIIFGQGVNPESQNT---GDKSGVALKFLYSLLDLKCSKTE-KKFKKAIRELLWFVCEYLKISGNKSY 401 (479) Q Consensus 326 ~~~~~~~~l~~~i~~~s~~~~~~~~~~---g~~Sg~Ai~~~~~~l~~k~~~~~-~~~~~~l~~~~~li~~~~~~~~~~~~ 401 (479) ++...++.....|...+..|-.-..+. |-+||+.=. ...+..+...+ ..+...+++++++++.-+. +..+ T Consensus 273 gl~~~l~~~~~~iaaa~~iP~t~L~G~s~~Glasge~D~---~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~--g~~~- 346 (437) T protein:vir:52 273 GLKDLLTEFRNAVAGAADMPVTILFGQSVSGLASGDEDI---QNYHEAIRRLQETRLRPIFEIIDPLICNELF--GGLP- 346 (437) T ss_pred CHHHHHHHHHHHHHHHhcCchhhhcCcCcccccccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCC- Confidence 777888888889988888886543332 223555432 23344455555 5688889988888765322 2222 Q ss_pred ccceeeEEeCCCCCCCHHHHHHHHHHH---------hccCChHHHHHhC------CCCCCHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 402 DYKTVQITFNHSMIINEAEKIDMAAKS---------TGIVSDETIVSNH------PWVEDVNDELERLKKQEDTQKEYDD 466 (479) Q Consensus 402 ~~~~i~i~f~~~~p~d~~e~a~~~~k~---------~g~is~et~~~~l------~~~~d~~~El~~i~~E~~~~~~~~~ 466 (479) .++++.|++....+..+.|+...+. +|+++.+.+.+.| |.+++ ++++..+ .......+ T Consensus 347 --~~~~~~f~pL~~~s~kekae~~~~~a~a~~~~~~~g~i~~~e~r~~L~~~g~~~~i~~--~~~~~~~---~~~~~~~~ 419 (437) T protein:vir:52 347 --ADWWFEFVPLTTVKQEQQINMLNTFATAANTLIQNGVLNEYQIANELRESGLFANISA--EHIEELK---NADEFAGN 419 (437) T ss_pred --CcceEEeCCcCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCc--ccccccc---CCCCCCCc Confidence 3688999999999998888765432 4778887776654 22221 1111110 00000000 Q ss_pred c-cCCCCCCCcCCC Q lcl|Aclame:pro 467 L-IPNNQDGVIDET 479 (479) Q Consensus 467 ~-~~~~~~~~~det 479 (479) . .+.+..+....+ T Consensus 420 ~~~~~~~~~~~~~~ 433 (437) T protein:vir:52 420 FEEPEKMEGAQVQN 433 (437) T ss_pred cCCCCCCCCCCCCC Confidence 0 000000100001 No 110 >protein:vir:94599 Length: 641 # NCBI annotation: PfWMP4_39 # Family: family:all:1548 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762669;genbank:gi:115304377;genbank:GeneID:5142299 Probab=99.34 E-value=8.6e-11 Score=75.76 Aligned_cols=467 Identities=12% Similarity=0.084 Sum_probs=205.7 Q ss_pred CCcccCcHHHHH---HHHhccChHHHHHHHHHHHHHhhH------HHHHHHHHHhccCCccccccccccccccccccccc Q lcl|Aclame:pro 2 LNIYISETDLIK---VQLKKESTINLVKVIEHYILKHRP------EKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTK 72 (479) Q Consensus 2 ~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (479) |++ .||...|. ..-.+.+...+...|.+.+.+-+- ++.+.+.+||......-..-......... ..... T Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~R~~~e~~W~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 78 (641) T protein:vir:94 1 MTI-EMPTPIIEDKESAKRKLSTDRIGGVVISKWQESRDKRNTVENNWDETYELYRASAIDRQNTRARNFQTTG-ADDAD 78 (641) T ss_pred Ccc-CCCcccccCCcchhhcCCchhHHHHHHHHHHHHHHhhcchHHHHHHHHHHhhcchhhhhhcccccccccc-cchhc Confidence 222 44554442 223355555555555554333221 23456666665432111000000000000 00111 Q ss_pred CcceeecchHHHHHHHHHhhhhcc----C--eeec---CCchhHHHHHHH-----HHhcCHHHHHHHHHHHHHhCCeEEE Q lcl|Aclame:pro 73 VNNKAINNYHKLLVDQKVGYSVGN----P--IVFN---ADDDNLTKLLND-----LLGEEFDDTITELYLNASNKGVEWL 138 (479) Q Consensus 73 ~~~ri~~n~~~~iv~~~a~~l~g~----~--~~~~---~~~~~~~~~~~~-----~~~n~~~~~~~~~~~~~~~~G~~~~ 138 (479) ..+|+..+.+...++.+++.|++- + +++. .++.+..++++. +..+++......+.++++.+|.+++ T Consensus 79 ~r~ki~~~~~~~~~~~l~s~Lm~~~~p~~~wf~~~p~~~ed~~~A~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~g~~iv 158 (641) T protein:vir:94 79 WRHRINTGHTFEVVETLVAYFKGATFPSDDWFDLKGMVPELADAARVVKQLTKTKLEAASIRDIFETYVRNLVLYGVSTY 158 (641) T ss_pred ccccccchhHHHHHHHHhhHHhhhhcCCCceEEEecCCCChHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhcCceEE Confidence 134678888888888888776543 2 2332 233333333333 2346777777899999999999999 Q ss_pred EEEeCC----------------------------CCceEEEEEccceeEEEEcCCCCCceEEEEEEEeee-cc-----c- Q lcl|Aclame:pro 139 HPYINR----------------------------KGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIE-DI-----D- 183 (479) Q Consensus 139 ~v~~d~----------------------------~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~-~~-----~- 183 (479) .++++. ...+++..++|.+++ +|+.....-..++++.... +. + T Consensus 159 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~r~~~v~~~di~--~dps~~~~~~~f~~~r~t~~t~~~l~~eg 236 (641) T protein:vir:94 159 RLGWDTSMERQFKRTFVETGDIFGGWEDVAVNRQRSELRIEPLSPYDVW--LDTSGGKNTGTFVRLRHTREELHELVTSG 236 (641) T ss_pred EeehhhHHHHhhhhhcccchhhcccccccceecccceeeEEecchhhee--ecCCCCcccccceehhhhHHHHHHHHhcC Confidence 987541 122456666676655 4554432212223222111 00 0 Q ss_pred --Cce-EE--EEEEEe---CCc-----------EEEEEEcCCccccccccccccccccccccccccccccc-cccccceE Q lcl|Aclame:pro 184 --GNK-IK--RVEYYT---END-----------ITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQ-GWGKVPFI 243 (479) Q Consensus 184 --~~~-~~--~~~~y~---~~~-----------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~vPvv 243 (479) +.. +. ...-|. ++. +..+...+ .+..+.. ......... .+........+ .|..+|++ T Consensus 237 ~~~~d~v~~~~~~~~~~~~~d~~~d~~~~~~~~~~~~e~~g-d~~~d~~-~~~~~~~~~-~g~~il~~~~~~~~d~~Pf~ 313 (641) T protein:vir:94 237 YYDLDLTQVEQYVDYKFADPDTPKDVNGTDTSGWDIIEYYG-PLLVEGV-QFWCVHAVF-YGKQLIRLSDSKYWCGSPFV 313 (641) T ss_pred CCChhhcchhhcccccccccccccccccccccccceeeeee-eeccCCC-ceeeEEEEE-eCCEEeecccccccCcCCeE Confidence 000 00 000000 000 00000000 0000000 000000001 11111222222 34566877 Q ss_pred Eec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceee Q lcl|Aclame:pro 244 PFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKL 318 (479) Q Consensus 244 ~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (479) .+. .+-+|+|..+.+.+.+..+|.+.-...+.+..+..|.+.+...+..... .-....+.++..+..++++++ T Consensus 314 ~~r~~~~~~~~YG~gp~~~~l~dqk~ln~l~r~~ld~~~~~~~p~~~~~~~~~~~~~--~l~~~PG~ii~~~~~~~v~pl 391 (641) T protein:vir:94 314 TTTLLPDRDSVYGMSVLHPNLGALHVLNVLTNGRLDNLVLHINKMWTLVEDGILKRE--DVKAKPGAVFKVAQHGSLQPI 391 (641) T ss_pred EecceecCCcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeeccccccccc--eeeccCCcceeeCCCCcceee Confidence 554 3457999999999999999999999999999999998866432211111 123345566666666778877 Q ss_pred ecC-CCHHHHHHHHHHHHHHHHHHhCCCCCccc---ccc-cccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH Q lcl|Aclame:pro 319 EIN-IPVEAKKELLDRLEKNIIIFGQGVNPESQ---NTG-DKSGVALKFLYSLLDLKCSKTEKKFKK-AIRELLWFVCEY 392 (479) Q Consensus 319 ~~~-~~~~~~~~~~~~l~~~i~~~s~~~~~~~~---~~g-~~Sg~Ai~~~~~~l~~k~~~~~~~~~~-~l~~~~~li~~~ 392 (479) ... .+.......++.+...+....+...+..+ ..| +.||+++..+......+.....+.|.+ ++..+++-++.+ T Consensus 392 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~TAtEV~~~~~e~~~~l~~i~r~l~~e~l~pll~~~~~~ 471 (641) T protein:vir:94 392 DMGRQDFVVTYQEAQVQESSVYRNTSTGPLIGNAAPRGGERVTAAEIQGVRDAGGNRLSSVHTHIEDSSTLPLLNKVFSL 471 (641) T ss_pred cCCccccchhHHHHHHHHHHHHHhhhhhhhhcccccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 543 33333344555555555444333322221 122 358888887777777777777777763 566666555544 Q ss_pred HHhc-----------------CCCccccceeeEEeCCCCCCCHHH---HHHHHHHHhc------cCCh-----------H Q lcl|Aclame:pro 393 LKIS-----------------GNKSYDYKTVQITFNHSMIINEAE---KIDMAAKSTG------IVSD-----------E 435 (479) Q Consensus 393 ~~~~-----------------~~~~~~~~~i~i~f~~~~p~d~~e---~a~~~~k~~g------~is~-----------e 435 (479) +... +-.+.+..++...|.- .|....+ .++.+..+.+ ..|. + T Consensus 472 ~~~~~~~p~i~R~~~~~~~~~~~~~~~p~~L~~~~~i-v~l~~~q~~~~~~~i~~l~~~~~~~a~~P~v~d~~d~~~~~~ 550 (641) T protein:vir:94 472 LQQFYVTPETIRMYVPEEQMDGFFEVSPEYLHYPYKF-LALGANYVVERERMVTDLLQLLDISGRVPQIGQSLDYALILE 550 (641) T ss_pred HHHhccchhhhhhhchhhhcccCCCCCccceeeeeeE-eecchhHHHHHHHHHHHHHHHHHHhhcChhhhhcCCHHHHHH Confidence 4332 1112222333333321 2333222 2333332222 1221 1 Q ss_pred HHHHhCCCCCCHHH-------HHHHHHHHHH-HHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 436 TIVSNHPWVEDVND-------ELERLKKQED-TQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 436 t~~~~l~~~~d~~~-------El~~i~~E~~-~~~~~~~~~~~~~~~~~det 479 (479) .+++.++. .++.. +-+....+++ ++......+...-.+..|+. T Consensus 551 ~~~~~~g~-~~p~~~ir~~~~~~~~~~~~~~~~q~~~~~~a~~~~~~~~~~a 601 (641) T protein:vir:94 551 DLLRQMRF-TDPMRYIKKAEAPPAAPPIAPAEPGALPPEMMNSVGGGLNDQA 601 (641) T ss_pred HHHHHhCC-CCchhhccCccCchhHHHHHHHHHHHHHHHHHHHHHhhhHHHH Confidence 22232221 11111 1111111111 01100111111111122222 No 111 >protein:vir:3139 Length: 599 # NCBI annotation: hypothetical protein # Family: family:all:1548 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640321;genbank:gi:21234402;genbank:GeneID:956054 Probab=99.33 E-value=8.3e-12 Score=81.34 Aligned_cols=459 Identities=11% Similarity=0.029 Sum_probs=229.4 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHH---HHHH--hhHHHHHHHHHHhccCCcccccccccccccccccccccCcc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEH---YILK--HRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNN 75 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~--~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (479) |+....+.+..+. ....+..+..+++.. +... +..+..+.+++|-.-. +... .... +-+ -.+ T Consensus 1 m~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~r~~~~~~w~e~~~yi~~~-~tr~----t~~~----~~~--w~~ 67 (599) T protein:vir:31 1 MSTDIKTLQKMLE--GRDDDRAFIDELVVLFTNMENARAQKDREDKELMDYIDAT-DTRK----TSNS----KLP--FKN 67 (599) T ss_pred CccchHHHHHHhh--ccCchHHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhh-cccc----cccC----CCC--ccc Confidence 4433222111111 112223333333322 2211 1122356777774321 1110 0000 000 114 Q ss_pred eeecchHHHHHHHHHhhhhccCe------eecC---C--chhHHHHHHHHH-----hcCHHHHHHHHHHHHHhCCeEEEE Q lcl|Aclame:pro 76 KAINNYHKLLVDQKVGYSVGNPI------VFNA---D--DDNLTKLLNDLL-----GEEFDDTITELYLNASNKGVEWLH 139 (479) Q Consensus 76 ri~~n~~~~iv~~~a~~l~g~~~------~~~~---~--~~~~~~~~~~~~-----~n~~~~~~~~~~~~~~~~G~~~~~ 139 (479) ++.+|-.-.+++.+..++++--+ .+.+ + .....++++.+- ..+|......++.+.+.+|.|+.. T Consensus 68 s~t~~k~~~~~~~l~a~~~~~~fp~~~w~d~~~~~~~~~~~~~~~~i~~yi~~Kl~e~~~~~~~~~~v~d~i~~G~~vat 147 (599) T protein:vir:31 68 STTINKLAHLHLMITTSYMEHLLPNRNWVDFVGFDNDSVNAEKREIARSYVRGKVEASNLEGVIERMVDDFAVRGFCVAH 147 (599) T ss_pred ccchHHHHHHHHHHHHHHHhhhcCCccceEeeecCCchhHHHHHHHHHHHhhhhhhhcchHHHHHHHHhhhcccCceeEe Confidence 56667777788888888765432 2221 2 233444555543 357888889999999999999888 Q ss_pred EEeC------CCC-------ceEEEEEccceeEEEEcCCC--CCceEEEEEEEeeec-cc---C---------------- Q lcl|Aclame:pro 140 PYIN------RKG-------EFKYVIIPAEEAIPIWDSKR--QRELVAFIRFYYIED-ID---G---------------- 184 (479) Q Consensus 140 v~~d------~~~-------~~~i~~~~p~~~~~~~d~~~--~~~~~~~i~~~~~~~-~~---~---------------- 184 (479) +.+- +|| .|++..++|..+++ |+.. .....+++|.+.... .. + T Consensus 148 ~~~er~~~~~~d~~v~~~~~~P~~ervsP~Di~~--Dp~A~si~d~~fivRs~~Tk~~L~~l~~~~~~~~y~~d~~~~~~ 225 (599) T protein:vir:31 148 TRHVKRMTVTAENQVIKNYSGTVTERLSPSDVFW--DVTADSLPKAAKCIRQLYTLGSLKREIEEGTFPLMSMEDFQKLR 225 (599) T ss_pred eeEEEcceeecccccccccccceEEeecccceee--CCCCCCCCcceeeeehhhhHHHHHHHhccCCccccchHHHHHHH Confidence 7531 122 48899999988875 6543 233333344443210 00 0 Q ss_pred ceEEEEEEEeCCcEEEEEE---------------cCCcccccccc---------cccc--cccccccccc--cccccccc Q lcl|Aclame:pro 185 NKIKRVEYYTENDITYFIE---------------RGNSFIQEFLY---------DEYG--KMTDIQEGHF--RINNKEQG 236 (479) Q Consensus 185 ~~~~~~~~y~~~~i~~~~~---------------~~~~~~~~~~~---------~~~~--~~~~~~~~~~--~~~~~~~~ 236 (479) +.......+..+....+.. -+..++...++ +... ....+.+... ..+..|.+ T Consensus 226 ~~~~~~~~~~~d~~~~~~g~D~~~~d~~~~~~eY~~~~~VevLeywGd~ydee~d~~~~~~ViTi~g~~~liR~e~np~~ 305 (599) T protein:vir:31 226 EERRTIREALADGYNGRRKFDSLHKKGYGSMMNYINEGVVEVLTFMGDFYDEENDELWNNYEITVIDRKIIGRKQSKDTW 305 (599) T ss_pred hhccCCCccccchhhhhhhccccccccccchhhhcccchhhhhhhhhhhhcccCCccccceEEEEecCcEEeecccCCCC Confidence 0000000111111100000 00000000000 0000 0011111111 23344577 Q ss_pred ccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCC Q lcl|Aclame:pro 237 WGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDG 311 (479) Q Consensus 237 ~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (479) +|..|++... .+-+|.|.+..+.++++.+|.+.-.+.+.+..+..|+++..|... +.......+.++.+.+ T Consensus 306 ~g~~Pyvv~~~~P~~~~~yG~G~l~~~~gaQ~~lN~~~Ng~iD~~~~~l~p~l~~~~dl~----~eD~~~~P~~v~~~~d 381 (599) T protein:vir:31 306 DGSQNLHIAVYEFQKDTLCPIGPLHRLTGMQYKLDKRENFREDLHDRFLHPSLKKVGDVR----EKGMRGGPNHVFEVEE 381 (599) T ss_pred CCCCCeEEEEeeeeccccCCCCCchhcchHHHHHHHHHHHhhhhhhhhhccccccccccc----ccCccCCCCcceeecC Confidence 8888988653 355799999999999999999999999999999999888776521 1112233678888999 Q ss_pred CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH Q lcl|Aclame:pro 312 GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQN--TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRE-LLWF 388 (479) Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~--~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~-~~~l 388 (479) .+++.+..++++..+....+..++..+-..++.|....|. .|..+|..++....+......++.+.|..++-+ +++- T Consensus 382 ~~~vq~~~p~s~~~~a~~~is~~e~~mee~sGvp~~~~G~~~ag~~TA~~is~l~naa~~~~~~~vr~~e~~~lepll~~ 461 (599) T protein:vir:31 382 TGDVQYMTPPAEVLQPDNQLSITLQLMEDLSGAPKESIGQRTAGEKTKFEVQLLDQGQNKVFRRKVKKFERELLTPVLND 461 (599) T ss_pred CCccccccCchhhhhHHHHHHHHHHHHHHhhccchhhcCCcccchhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH Confidence 9999999999888777888888888888899999887774 356788888888888888888888888887644 5553 Q ss_pred HHHHHHhc-CC--------Cc---ccccee-------eEEeCCCCCCCHHHHHHHHHHHhc---------c---CChHHH Q lcl|Aclame:pro 389 VCEYLKIS-GN--------KS---YDYKTV-------QITFNHSMIINEAEKIDMAAKSTG---------I---VSDETI 437 (479) Q Consensus 389 i~~~~~~~-~~--------~~---~~~~~i-------~i~f~~~~p~d~~e~a~~~~k~~g---------~---is~et~ 437 (479) +....... .. .+ ....+| .+.+-+.-..-..+..+..+++.+ + ++++.. T Consensus 462 l~e~~~~f~D~~~tiri~~~e~~~~~f~~i~redl~~~~~~v~~Ga~~v~ere~~~q~l~~il~~~~~q~~~P~~~~k~l 541 (599) T protein:vir:31 462 YLEQGRNHLDASDTIKTFNSELGTATFLDITADDLNLNGQMVAQGATLFAEKANTLQNLNAILGGPLGAALAPHMSRTKL 541 (599) T ss_pred HHHHHHhhcccccceeeecccccceeeEEeehhhhhCCeeeeechhhHHHHHHHHHHHHHHHhcccCCCccchhhHHHHH Confidence 33322211 00 00 001111 111212222234455555555432 2 233221 Q ss_pred ---HH---hCCC--C-C-CH-----HHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 438 ---VS---NHPW--V-E-DV-----NDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 438 ---~~---~l~~--~-~-d~-----~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) +. .+.. + . .+ +.+...++++-++. +-.+.+...-++..-+| T Consensus 542 ~~~l~~~~~l~~~~~~~~~va~~eqq~~~~m~Q~~lq~~-~~~~~~~~~~~~~~~~~ 597 (599) T protein:vir:31 542 FNAVEYLGDLDAYGIFTFGIGVQEDQQLARMAQKSTQQT-EETALTQEEVGGPTTDT 597 (599) T ss_pred HHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHHHHh-HhhhhhhhhcCCCCccc Confidence 11 1211 1 1 11 11111112211111 11122221112222222 No 112 >protein:vir:95821 Length: 763 # NCBI annotation: 94 kDa protein # Family: family:all:1548 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950537;genbank:gi:119952228;genbank:GeneID:5075648 Probab=99.32 E-value=4e-11 Score=77.57 Aligned_cols=441 Identities=11% Similarity=0.040 Sum_probs=185.8 Q ss_pred ccCcHHHH--------HHHHhccChHHHHHHHHHHHHHh------hHHHHHHHHHH--hccCCccccccccccccccccc Q lcl|Aclame:pro 5 YISETDLI--------KVQLKKESTINLVKVIEHYILKH------RPEKYKQGEEY--YYGNTDVNNKRRYYLLDGAKVD 68 (479) Q Consensus 5 ~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~y--y~g~~~~~~~~~~~~~~~~~~~ 68 (479) +++.++.. ...+..-+...+.+.|.+.+... .+.+.....+| |+|+.+.+ . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 67 (763) T protein:vir:95 1 MEQNTDSMVPLPDPSQATKLTSWKNELSLQALKADLDAAKPSHTAMMIKVKEWNDLMRIEGKAKPP-------------K 67 (763) T ss_pred CCcCccCcCCCccccchhcCCCCCChHHHHHHHHHHHhhhcchhHHHHHHHHHHHhhhccccCccc-------------c Confidence 22111111 11112223333333333322221 12233344555 44443211 1 Q ss_pred ccccCcceeecchHHHHHHHHHhhh----hccC--eeecC---Cchh----HHHHHHHH--HhcCHHHHHHHHHHHHHhC Q lcl|Aclame:pro 69 DFTKVNNKAINNYHKLLVDQKVGYS----VGNP--IVFNA---DDDN----LTKLLNDL--LGEEFDDTITELYLNASNK 133 (479) Q Consensus 69 ~~~~~~~ri~~n~~~~iv~~~a~~l----~g~~--~~~~~---~~~~----~~~~~~~~--~~n~~~~~~~~~~~~~~~~ 133 (479) .. -..+++.+-....|+.....| ++.+ |.+.+ +|.+ ...+++.. ..|+-...+..++++++.. T Consensus 68 ~~--grs~vv~~~v~~~ve~~~~~l~~~f~~~~~~~~~~P~~~~D~~~A~q~t~~~n~~~~~~~~~~~~~~~~~~~~l~~ 145 (763) T protein:vir:95 68 VK--GRSQVQPKLVRRQAEWRYSALTEPFLGSNKLFKVTPVTWEDVQGARQNELVLNYQFRTKLNRVSFIDNYVRSVVDD 145 (763) T ss_pred cC--CCccccCHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCcchHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhc Confidence 11 123456666666666555544 3332 34433 2222 22344542 2355445678999999999 Q ss_pred CeEEEEEEeCC--------------------------------------------------------------------- Q lcl|Aclame:pro 134 GVEWLHPYINR--------------------------------------------------------------------- 144 (479) Q Consensus 134 G~~~~~v~~d~--------------------------------------------------------------------- 144 (479) |.+++.|||+. T Consensus 146 ~~gv~k~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (763) T protein:vir:95 146 GTGIVRVGWNREIRKEKQEVPVFSLFPIQTQEQADALQQALQLRTDNPRGYEENVDEAIKESVRFFDETGQATYAVQTGT 225 (763) T ss_pred CcceEEEeeeeeeeeeeeeehhhhhccccchhHHHHHHHHHHhhhhhhccccccccchhhhhhhhccccCcceeeecccc Confidence 99999998741 Q ss_pred ---------CCceEEEEEccceeEEEEcCCCC---CceEEEE-EEEee-eccc--Cc----------------------- Q lcl|Aclame:pro 145 ---------KGEFKYVIIPAEEAIPIWDSKRQ---RELVAFI-RFYYI-EDID--GN----------------------- 185 (479) Q Consensus 145 ---------~~~~~i~~~~p~~~~~~~d~~~~---~~~~~~i-~~~~~-~~~~--~~----------------------- 185 (479) .++|+|..++|.++++ |+... ....+++ +.+.. .+.. +. T Consensus 226 ~~~~~~~~~k~~p~ie~V~p~d~~i--Dp~a~sD~~Da~~~~~~~~~t~~dL~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 303 (763) T protein:vir:95 226 TTTEVEVPLANHPTVEMLNPENIII--DPSCQGDINKAMFAIVSFETCKADLLKEKDRYHNLNKIDWQSSAPVNEPDHAT 303 (763) T ss_pred eeEEEEEEecCceEEEeecHHHhee--cCCCCCchhhCceEeeEEeccHHHHHhccCCccccchhcchhccccccccccc Confidence 1345777899999885 44321 1111212 11111 1110 00 Q ss_pred --------------eEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEec----- Q lcl|Aclame:pro 186 --------------KIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK----- 246 (479) Q Consensus 186 --------------~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~----- 246 (479) .+...++|.. +-..+.+... .....-...........+.+.|++|++.+. T Consensus 304 ~~~~~~~~~d~~~~~V~v~E~y~~-----~d~~gdg~~~------~~~v~~~g~~iL~~~~~p~~~~~~PFv~~~~~p~~ 372 (763) T protein:vir:95 304 TTPQEFQISDPMRKRVVAYEYWGF-----WDIEGNGVLE------PIVATWIGSTLIRLEKNPYPDGKLPFVLIPYMPVK 372 (763) T ss_pred cchhhccCCCcccceEEEEEeeee-----eccCCcceeE------EEEEEEEcCeeeecccccccCCCcCEEEecceeec Confidence 0001111110 0000000000 000000011111122334455677776553 Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeee-ecCCccchhhHHHHhhcccceecCCCCcc----eeeecC Q lcl|Aclame:pro 247 NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL-KEYPGTSLQEFIDNIRYYKSIKVDGGGGV----DKLEIN 321 (479) Q Consensus 247 n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 321 (479) .+.+|.|.++.++++++.+|...+.+.+.+...+.|.+.+ .|.. .. .+ ......+.++.+..+..+ .+...+ T Consensus 373 ~~~~G~gi~~~~~d~Qr~~N~~~~~~~d~l~~~~~~~~~v~~gav-~~-~d-~~~~~pg~v~~v~~g~~~~~~~~~~~~p 449 (763) T protein:vir:95 373 RDMYGEPDAELLGDNQAVLGAVMRGMIDLLGRSANGQRGMPKGML-DA-LN-SRRYREGEDYEYNPTQNPAQMIIEHKFP 449 (763) T ss_pred CcccCCchHHHhhHHHHHHHHHHHHHHHHHHhhcCCcEEeecccc-cc-hh-hhcccCCceEEeeCCCChhhhcccccCC Confidence 4567999999999999999999999999999988886644 3321 11 11 222345556655544332 223222 Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCcccccc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 322 IPVEAKKELLDRLEKNIIIFGQGVNPESQNTG---DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGN 398 (479) Q Consensus 322 ~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g---~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~ 398 (479) .........+..+...+-..++.+..+.+..+ +.++.++...............+.|..+++.+.+.++.++..... T Consensus 450 ~~~~~~~~~l~~~~~~~e~~TGv~~~~~G~~~~~~~~tat~v~~l~qa~~~~~~~~~r~~~~~~k~l~~~~l~Li~q~~d 529 (763) T protein:vir:95 450 ELPQSALTMATLQNQEAESLTGVKAFAGGVTGESYGDVAAGIRGVLDAASKREMAILRRLAKGMSEIGNKIIAMNAVFLA 529 (763) T ss_pred CCcchHHHHHHHHHHHHHHhhCcchhhcCcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC Confidence 22334555566666666667777766554332 234444555555555555666677777777777776666554211 Q ss_pred C---------cc-c--------cceeeEEeCCCCCCCH-HHHHHHHHH----HhccCChHH---HH----HhC--CCC-- Q lcl|Aclame:pro 399 K---------SY-D--------YKTVQITFNHSMIINE-AEKIDMAAK----STGIVSDET---IV----SNH--PWV-- 444 (479) Q Consensus 399 ~---------~~-~--------~~~i~i~f~~~~p~d~-~e~a~~~~k----~~g~is~et---~~----~~l--~~~-- 444 (479) . .+ . ..+|.|.-.. .+. .+.+..+.. +...++... .+ +.. +.. T Consensus 530 ~~rviRI~g~e~v~v~~~~~~~~~DV~V~~~~---as~~~q~~~~l~~ll~~l~~~~~~~~~~~il~~~~d~~~~~~~~~ 606 (763) T protein:vir:95 530 EHEVVRITNEEFVTIKREDLKGNFDLEVDIST---AEVDNQKSQDLGFMLQTIGPNVDQQITLNILAEIADLKRMPKLAH 606 (763) T ss_pred CCcEEEEeCCccccccHHHhcCCcceEEeccc---chHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHhhhchhhhHH Confidence 1 00 0 1123322221 122 122222222 111122111 11 101 000 Q ss_pred --------CCH------HHHHHHHHHHHHHH-Hhhh-hccCCCCCC-CcCCC Q lcl|Aclame:pro 445 --------EDV------NDELERLKKQEDTQ-KEYD-DLIPNNQDG-VIDET 479 (479) Q Consensus 445 --------~d~------~~El~~i~~E~~~~-~~~~-~~~~~~~~~-~~det 479 (479) .++ +.++++++.+.+.. +... ......... ..+.. T Consensus 607 ~lr~~q~~~d~~~q~qaqle~~~~q~e~~~~~akaq~~qaqa~~~~aq~e~~ 658 (763) T protein:vir:95 607 DLRTWQPQPDPVQEQLKQLAVEKAQLENEELRSKIRLNDAQAQKAMAERDNK 658 (763) T ss_pred HHHhcCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 010 00111111111100 0000 000000000 00000 No 113 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.30 E-value=9.5e-12 Score=81.01 Aligned_cols=379 Identities=13% Similarity=0.059 Sum_probs=186.1 Q ss_pred HHHHHHHHHHhccCCcccccc-cccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH Q lcl|Aclame:pro 37 PEKYKQGEEYYYGNTDVNNKR-RYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL 115 (479) Q Consensus 37 ~~~~~~~~~yy~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~ 115 (479) ..+.+-+...+-|-++--... .............. -.+.+++.+|+.+|.-++.+++++++++++ ..+...|. T Consensus 1 ~~~~D~~~n~~~gg~~~~~~~~~~~~~~~~~l~a~Y-----~~~~l~~~~Vd~~aed~~r~g~~i~~~~~~-~~~~~~~~ 74 (422) T protein:vir:10 1 MVKTDSYANIFLGGSDGSEIYGSLQNQAPTILASLY-----ADNALVRRIIDTIPETALAAGFHIDGIDDE-PAFWSRWD 74 (422) T ss_pred CccchhhHHHHcCCCCCccccCcccccCHHHHHHHH-----HhChhhHHHHhhhhHHHhcCCccccCCCHH-HHHHHHHH Confidence 112222222233322100000 00000000000011 135778999999999999999999987654 23444555 Q ss_pred hcCHHHHHHHHHHHHHhCCeEEEEEEeCCC----------Cce-EEEEEccceeEEEEcCCCCCceEEE-EEEEeeeccc Q lcl|Aclame:pro 116 GEEFDDTITELYLNASNKGVEWLHPYINRK----------GEF-KYVIIPAEEAIPIWDSKRQRELVAF-IRFYYIEDID 183 (479) Q Consensus 116 ~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~----------~~~-~i~~~~p~~~~~~~d~~~~~~~~~~-i~~~~~~~~~ 183 (479) +=++...+.++.+.+-.||.+++++-.... |.+ .+.+++|.++.|..-+.+...+-++ ..+|.+.... T Consensus 75 ~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~dp~s~~fg~P~~y~v~~~~ 154 (422) T protein:vir:10 75 DLEMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTREENPRNARFGEPLTYRITTNE 154 (422) T ss_pred HhhHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchhcccCccccccCcceEEEEecCC Confidence 457788889999999999999988876321 112 2445555554432111111111111 1112211110 Q ss_pred CceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccce-EEecCCCCCCchHHH-HHHH Q lcl|Aclame:pro 184 GNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF-IPFKNNEKCVSDLTF-YKSL 261 (479) Q Consensus 184 ~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv-v~~~n~~~g~s~~~~-v~~l 261 (479) +.. ... +.+.++..|.. .. +|- ....++.+|.|.+.. +.+- T Consensus 155 ~~~--~~~-iH~SRli~~~g---------------------------~~-------~p~~~~~~~~~~G~S~l~~~~~~~ 197 (422) T protein:vir:10 155 SDM--FYD-VHYSRIHIIDG---------------------------ER-------IPNVMRRQNDGWGRSVLSSDILDS 197 (422) T ss_pred CCc--cee-eccceeEEeCC---------------------------CC-------chhhhcccCCcccchhHHHHHHHH Confidence 000 000 11111111100 00 111 122345678998876 6687 Q ss_pred HHHHHHHHHHHHHHHHHhccceeeeecCCcc---c--hhhHHH------Hh-hcccceecCC-CCcceeeecCCCHHHHH Q lcl|Aclame:pro 262 IDIYDNNISTLADNLDEIQEVIYVLKEYPGT---S--LQEFID------NI-RYYKSIKVDG-GGGVDKLEINIPVEAKK 328 (479) Q Consensus 262 id~~~~~~s~~~~~~~~~~~p~l~~~g~~~~---~--~~~~~~------~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 328 (479) +..++.+.......+...+...+.+.+.... . ...... .. .....+.+.+ +.+.+. .+.+..++. T Consensus 198 i~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~--~~~~lsgl~ 275 (422) T protein:vir:10 198 IKDYTNCERLATQLLKRKQQAVWKAKGLAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSV--LNSDIGGID 275 (422) T ss_pred HHHHHHHHHHHHHHHHHhccccccchhHHHhcCCccchHHHHHHHHHHHHhcCCccceeEecCCcceEE--EecccCChH Confidence 8888888777777777777666655542111 1 111000 00 1122233333 334444 445566788 Q ss_pred HHHHHHHHHHHHHhCCCCCccccc---c-cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCcccc Q lcl|Aclame:pro 329 ELLDRLEKNIIIFGQGVNPESQNT---G-DKSGVALKFLYSLLDLKCSKTE-KKFKKAIRELLWFVCEYLKISGNKSYDY 403 (479) Q Consensus 329 ~~~~~l~~~i~~~s~~~~~~~~~~---g-~~Sg~Ai~~~~~~l~~k~~~~~-~~~~~~l~~~~~li~~~~~~~~~~~~~~ 403 (479) ..++.....|...+..|-.-..+. | |.||+.-...+.. .++..+ ..+.+.+++++++++. . T Consensus 276 ~~~~~~~~~iaaa~~IP~t~L~G~s~~Glnatgd~d~~~yyd---~i~~~Qe~~l~p~l~~l~~~i~~-----------s 341 (422) T protein:vir:10 276 AFLDKKFDRIVALSGIHEIILKNKNVGGVSSSQNTALETFHK---LVDRKRNAELLPILEFLIPFIVN-----------A 341 (422) T ss_pred HHHHHHHHHHHhhhCCCeeeeccCCcccccccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcc-----------c Confidence 888888999888888885433222 2 3456654333333 344344 5678889988888763 1 Q ss_pred ceeeEEeCCCCCCCHHHHHHHHHHH---------hccCChHHHHHhCCCCCCHHHH-HHHHHHHHHHHHhhhhccCCCCC Q lcl|Aclame:pro 404 KTVQITFNHSMIINEAEKIDMAAKS---------TGIVSDETIVSNHPWVEDVNDE-LERLKKQEDTQKEYDDLIPNNQD 473 (479) Q Consensus 404 ~~i~i~f~~~~p~d~~e~a~~~~k~---------~g~is~et~~~~l~~~~d~~~E-l~~i~~E~~~~~~~~~~~~~~~~ 473 (479) .++++.|++-...++.|.|+...+. +|+++.+.+.+.|....+ ... ...+..+.....+ ...+..++ T Consensus 342 ~~~~~~f~pL~~~sekekaei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~ 418 (422) T protein:vir:10 342 EEWSVEFNPLAQESSKDKAEILEKNVNSIAALIAAGAMDIDEARDTLRTIAP-EVKINDGSVETEVTISE--TSNDPLEV 418 (422) T ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcc-cccCCCCCCccccchhh--cCCCCCCC Confidence 3678999999999999988865542 467888777765521100 000 0000000000000 11111222 Q ss_pred CCcC Q lcl|Aclame:pro 474 GVID 477 (479) Q Consensus 474 ~~~d 477 (479) +.+| T Consensus 419 ~~~d 422 (422) T protein:vir:10 419 PTDD 422 (422) T ss_pred CCCC Confidence 2233 No 114 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.29 E-value=5.9e-11 Score=76.64 Aligned_cols=394 Identities=10% Similarity=0.066 Sum_probs=191.5 Q ss_pred CCCcc-cCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeec Q lcl|Aclame:pro 1 MLNIY-ISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAIN 79 (479) Q Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~ 79 (479) |-.++ ...++.+..........-.... +..||....-+-+ + .....+ .. T Consensus 71 ~ds~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~f~gy-q---------l~alY~-----~~ 120 (765) T protein:vir:96 71 MDSAYGDGPTPAAKAAAGGQNPYVVPTM---------------LQDWYNSQGFIGY-Q---------ACAIIS-----QH 120 (765) T ss_pred ccccccccccchHHHhhhccCccchhhH---------------HHhhhcccCCccH-H---------HHHHHH-----hC Confidence 43333 2223333222222221111111 2223222110000 0 000000 24 Q ss_pred chHHHHHHHHHhhhhccCeeecCCchhH-----HHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCC-CCc------ Q lcl|Aclame:pro 80 NYHKLLVDQKVGYSVGNPIVFNADDDNL-----TKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINR-KGE------ 147 (479) Q Consensus 80 n~~~~iv~~~a~~l~g~~~~~~~~~~~~-----~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~~~------ 147 (479) .+++.+|+.++.-++.+++++++++++. ..+...|..=++...+.++.+.+-.||.+|+++-.+. ++. T Consensus 121 ~l~rkiVd~pAeDa~R~g~~I~~~~~e~~~~~~~~l~~~~~rl~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~l~~PL 200 (765) T protein:vir:96 121 WLVDKACSMSGEDAARNGWELKSDGRKLSDEQSALIARRDMEFRVKDNLVELNRFKNVFGVRIALFVVESDDPDYYEKPF 200 (765) T ss_pred chhhhhhhcchHHhhcCCceeecCccccCHHHHHHHHHHHHHhhHHHHHHHHHHHhhhceeeEEEEEecccCcchhhccc Confidence 7789999999999999999998864322 2222334444678888999999999999988876642 221 Q ss_pred ---------e-EEEEEccceeEEEEc---CCCCCceEEE-EEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccc Q lcl|Aclame:pro 148 ---------F-KYVIIPAEEAIPIWD---SKRQRELVAF-IRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFL 213 (479) Q Consensus 148 ---------~-~i~~~~p~~~~~~~d---~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~ 213 (479) + .|.+++|..+.+.-. ..+....-++ ...|.+ .+. . +.+.++..|... T Consensus 201 ~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg~P~~y~i---~g~-----~-IH~SRli~~~g~--------- 262 (765) T protein:vir:96 201 NPDGIAPGSYKGISQIDPYWAMPQLTAESTADPSAEHFYEPDFWII---SGK-----K-YHRSHLVVVRGP--------- 262 (765) T ss_pred cccccccceeeEEEEechhhcccccchhccccccccccCcceeeee---cCc-----e-eccceEEEecCC--------- Confidence 1 133344443333110 0000000000 000110 000 0 011111111000 Q ss_pred cccccccccccccccccccccccccccceE-EecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcc Q lcl|Aclame:pro 214 YDEYGKMTDIQEGHFRINNKEQGWGKVPFI-PFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGT 292 (479) Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~ 292 (479) . +|-. .-.++.+|+|.++.+.+-+..++.+.-.....+...+...+.+.+.... T Consensus 263 ------------------~-------lpd~lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~v~k~~~~~~l 317 (765) T protein:vir:96 263 ------------------Q-------PPDILKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTSTIHVDVEKAI 317 (765) T ss_pred ------------------C-------chhhhccccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeeechHhhh Confidence 0 1111 0113456999999999999999988877777777777776655443211 Q ss_pred chh-hHHH------Hhh-cccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc---c-cccHHHH Q lcl|Aclame:pro 293 SLQ-EFID------NIR-YYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT---G-DKSGVAL 360 (479) Q Consensus 293 ~~~-~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~---g-~~Sg~Ai 360 (479) ..+ .... ..+ ..+++.++.+.+.+. .+.+...+...++...+.|...+..|-.-..+. | |+||+.= T Consensus 318 ~~~~~l~~r~~~~~~~r~n~g~~~id~ee~~e~--~s~~lsgl~d~l~~~~~~iAaas~IP~t~LfGqsp~GlnATGe~D 395 (765) T protein:vir:96 318 ANEDAFNARLAFWIANRDNHGVKVIGIDETMEQ--FDTNLSDFDSVIMNQYQLVAAIAKTPATKLLGTSPKGFNATGEHE 395 (765) T ss_pred ccHHHHHHHHHHHHHhcCCceeEEecCCcceeE--EecccCCHHHHHHHHHHHHHhhhCCCeeeeccCCcccccCcchHH Confidence 111 1111 111 223445555555444 445666788888999999888888885433222 2 4677753 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHH-------H--hc Q lcl|Aclame:pro 361 KFLYSLLDLKCSKTE-KKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAK-------S--TG 430 (479) Q Consensus 361 ~~~~~~l~~k~~~~~-~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k-------~--~g 430 (479) ..-|.. .+..++ ..+...|++++++++.. +..+ .++++.|++....+..|.|+...+ + +| T Consensus 396 ~~nYyD---~I~s~Qe~~l~p~le~L~~li~~s----~~i~---~d~~i~FnpL~~~sekEkAei~~k~Aea~~~~~~~G 465 (765) T protein:vir:96 396 TISYHE---ELESIQEHIFDPLLERHYLLLAKS----ESID---VQLEIVWNPVDSTTSQQQAELNNKKAATDEIYINSG 465 (765) T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh----cCCC---CcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcC Confidence 222322 333333 56788999999887753 2222 268999999999999998886543 2 47 Q ss_pred cCChHHHHHhCC------CCCCHHHHHH---HHHHHHHHHHhhh--hccCC------------CCCCCcCCC Q lcl|Aclame:pro 431 IVSDETIVSNHP------WVEDVNDELE---RLKKQEDTQKEYD--DLIPN------------NQDGVIDET 479 (479) Q Consensus 431 ~is~et~~~~l~------~~~d~~~El~---~i~~E~~~~~~~~--~~~~~------------~~~~~~det 479 (479) +++...+++.|. +-.....+.+ -+..+..++.+.. +.... ..++.++.. T Consensus 466 vis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~pe~~~~~~~~~~~~~~~~~e~~~~~a~p~~~eg~~~~~ 537 (765) T protein:vir:96 466 VVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSPENLAELEKAGAQSAKAKGEAERAEAQAGAVEGAGDPV 537 (765) T ss_pred CCCHHHHHHHHhccccCCCCCCCccccccccCCCccccccccCCCcccccccCccccccCCCCccCCCCccc Confidence 899988888762 1110111111 0110000000000 00000 000000000 No 115 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.26 E-value=1.3e-11 Score=80.28 Aligned_cols=380 Identities=14% Similarity=0.070 Sum_probs=183.5 Q ss_pred HHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHH Q lcl|Aclame:pro 32 ILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLL 111 (479) Q Consensus 32 ~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~ 111 (479) +..... +-+....-|.++-...+.............. -.+.+++.+|+.+|.-++.++++++++++. ..+. T Consensus 1 ~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Y-----~~~~l~~~~Vd~~aed~~r~g~~i~g~~~~-~~~~ 71 (427) T protein:vir:10 1 MKIVKH---DGYNDIFNGGADGSPKPFFMSDASYHVGSFY-----NDNATAKRIVDVIPEEMVTAGFKMSGVKDE-KEFK 71 (427) T ss_pred CCcccc---chHHHHhhcCCCCcccCccccCchHHHHHHH-----HcCchhhhhhccchHHhhcCCccccCccHH-HHHH Confidence 111111 1112222222111111100000000000011 135778999999999999999999986543 2333 Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCC----------c-eEEEEEccceeEEEEcCCCCCceEEE-EEEEee Q lcl|Aclame:pro 112 NDLLGEEFDDTITELYLNASNKGVEWLHPYINRKG----------E-FKYVIIPAEEAIPIWDSKRQRELVAF-IRFYYI 179 (479) Q Consensus 112 ~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~----------~-~~i~~~~p~~~~~~~d~~~~~~~~~~-i~~~~~ 179 (479) ..|..=++...+.++.+.+-.||.+++++-.+.+. . ..+.+++|.++.|-.-..++..+-++ ..+|.+ T Consensus 72 ~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~dp~s~~fg~P~~y~v 151 (427) T protein:vir:10 72 SLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNARSPRYGEPEIYKV 151 (427) T ss_pred HHHHHhhHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhcccccccccCccccccCcceEEEE Confidence 44544477888899999999999999988664321 1 12444444443332111111111000 111221 Q ss_pred ecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceE-EecCCCCCCchHH-H Q lcl|Aclame:pro 180 EDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFI-PFKNNEKCVSDLT-F 257 (479) Q Consensus 180 ~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~s~~~-~ 257 (479) ....+. ....+.+.++..|... . +|-. ...++.+|.|.+. . T Consensus 152 ~~~~~~---~~~~iH~SRli~~~g~---------------------------~-------~p~~~~~~~~~~G~S~l~~~ 194 (427) T protein:vir:10 152 SPGDNM---QPYLIHHSRVFIADGE---------------------------R-------VAQQARKQNQGWGASVLNKS 194 (427) T ss_pred ecCCCC---cceEEccccEEEecCC---------------------------C-------chhhhcccCCcccchhhhHH Confidence 110000 0000111111111000 0 0110 1124567888875 4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcc---chh--hHHH------Hh-hcccceecCC-CCcceeeecCCCH Q lcl|Aclame:pro 258 YKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGT---SLQ--EFID------NI-RYYKSIKVDG-GGGVDKLEINIPV 324 (479) Q Consensus 258 v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~---~~~--~~~~------~~-~~~~~~~~~~-~~~~~~~~~~~~~ 324 (479) +.+-+..++.+.......+...+...+.++|.... ... .... .. .....+.+.+ +.+ +-+.+.+. T Consensus 195 ~~~~i~~~~~~~~~~~~l~~k~~~~v~k~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~--~e~~~~~l 272 (427) T protein:vir:10 195 LIDAICDYDYCESLATQILRRKQQAVWKVKGLAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEE--YDVLNSDI 272 (427) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHhcCccchHHHHHHHHHHHHhcCcccceeeecCCCc--eeEEeccc Confidence 77777788887777777777777666655543211 111 1011 11 1133333433 233 44445566 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCccccc---c-cccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 325 EAKKELLDRLEKNIIIFGQGVNPESQNT---G-DKSGVALKFLYSLLDLKCSKT-EKKFKKAIRELLWFVCEYLKISGNK 399 (479) Q Consensus 325 ~~~~~~~~~l~~~i~~~s~~~~~~~~~~---g-~~Sg~Ai~~~~~~l~~k~~~~-~~~~~~~l~~~~~li~~~~~~~~~~ 399 (479) ..+...++.....|...+..|-.-..+. | |.||+.=...|... ++.+ +..+.+.+++++++++.- T Consensus 273 sgl~~~~~~~~~~iaaa~~IP~t~L~G~sp~Glnstgd~D~~nyyd~---i~~~Qe~~l~p~l~~l~~~i~~s------- 342 (427) T protein:vir:10 273 SGVPEFLSSKMDRIVSLSGIHEIIIKNKNVGGVSASQNTALETFYKL---VDRKREEDYRPLLEFLLPFIVDE------- 342 (427) T ss_pred CChHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcC------- Confidence 6788888999999888888885433222 2 35666533333333 3333 356888888888886621 Q ss_pred ccccceeeEEeCCCCCCCHHHHHHHHHHH---------hccCChHHHHHhCCCC------CCHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 400 SYDYKTVQITFNHSMIINEAEKIDMAAKS---------TGIVSDETIVSNHPWV------EDVNDELERLKKQEDTQKEY 464 (479) Q Consensus 400 ~~~~~~i~i~f~~~~p~d~~e~a~~~~k~---------~g~is~et~~~~l~~~------~d~~~El~~i~~E~~~~~~~ 464 (479) .++++.|++....++.|.|+...+. +|+++.+.+.+.|-.. .+.. + +..|..++. T Consensus 343 ----~~~~~~f~pL~~~s~kEkaei~~~~a~a~~~~~~~gvi~~~e~r~~L~~~~~~~~~~~~~-~---~~~e~~~~~-- 412 (427) T protein:vir:10 343 ----EEWSIEFEPLSVPSKKEESEITKNNVESVTKAITEQIIDLEEARDTLRSIAPEFKLKDGN-N---INIREPEET-- 412 (427) T ss_pred ----CCcEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhhccccCCCCc-c---ccccccchh-- Confidence 3678999999999999988865442 4788888776654111 0100 0 000100000 Q ss_pred hhccCCCCCCCcCCC Q lcl|Aclame:pro 465 DDLIPNNQDGVIDET 479 (479) Q Consensus 465 ~~~~~~~~~~~~det 479 (479) .+..|...++..||- T Consensus 413 ~e~~p~~~e~~~d~~ 427 (427) T protein:vir:10 413 TEPEPGLGEKLEDEN 427 (427) T ss_pred cCCCCCCCCCCCCCC Confidence 011122222222222 No 116 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.24 E-value=4.6e-11 Score=77.23 Aligned_cols=411 Identities=11% Similarity=0.048 Sum_probs=194.6 Q ss_pred CCCcccCcH------HHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIYISET------DLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |+.+.--.. +-..-.....+......-....... .+-..+..||.... .+..+. .... T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~l---------~a~Y--- 110 (537) T protein:vir:10 47 MMAIRDHAIAMMPKVDGSHPDMAMDGLDVEGGTFSAYANP---NLSEGLVLWYAQQA-FIGHQM---------CALI--- 110 (537) T ss_pred cCCCCCccCcccccccccccchhccccccchhhhhhhccc---cccchhhhhccccC-CccHHH---------HHHH--- Confidence 222211000 0000000000100000000000000 01111122222211 110000 0000 Q ss_pred ceeecchHHHHHHHHHhhhhccCeeecCCch------hHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCC-CCc Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVFNADDD------NLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINR-KGE 147 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~------~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~~~ 147 (479) -...+++.+|+.+|.-++.+++.+++++. ....+...|.+-++...+.++.+.+-.||.+++++..+. |+. T Consensus 111 --~~~~l~r~iVd~~A~d~~r~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~l~~a~~~~rlyG~~~i~i~v~~~D~~ 188 (537) T protein:vir:10 111 --ATHWLVNKACSQMPRDAMRKGYKIISDDGNELDPKDAKFIDRYDRAFNIKKHAIQFVRKGRIFGIRIALFKVDSPDPY 188 (537) T ss_pred --HhCchhhhhhhhhhHHhhcCCceeecCCcccccHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEeecCcCCc Confidence 13578999999999999999999987542 222333445555788888999999999999988887643 332 Q ss_pred eE----------------EEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccc Q lcl|Aclame:pro 148 FK----------------YVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQE 211 (479) Q Consensus 148 ~~----------------i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~ 211 (479) .. +.+++|..+.|..... ...+..+..+...+.|.- .+.. T Consensus 189 ~~~~Pl~~~~i~kg~~k~l~vidp~~~~~~~~~~------------~~~dp~sp~fg~P~~y~v--------~g~~---- 244 (537) T protein:vir:10 189 YYEKPFNIDGVMPGAYKGIVQIDPYWCAPLLDAQ------------ASSNPVSMHFYEPTYWLI--------NGKK---- 244 (537) T ss_pred ccccccccccccccceeEEEEechhhcccccchh------------hhccCCccccCCceeeee--------cCeE---- Confidence 21 2233333332211000 000111111111111110 0000 Q ss_pred cccccccccccccccccccccccccccc-cceEEe-cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC Q lcl|Aclame:pro 212 FLYDEYGKMTDIQEGHFRINNKEQGWGK-VPFIPF-KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY 289 (479) Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-vPvv~~-~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~ 289 (479) .+.++.-|..|. +|-..- .++.+|+|.++.+.+-+..++.+.-..+..+...+.+.+.+.+. T Consensus 245 ----------------iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~~ 308 (537) T protein:vir:10 245 ----------------YHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIMERVYAAERTANEGPMLAMTKRQTVLKVDAA 308 (537) T ss_pred ----------------ecceeEEEecCCCCchhhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeechH Confidence 000011010000 111100 13456999999999999999998888888888888887766553 Q ss_pred Cccchhh-HHH------Hhhc-ccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc---c-cccH Q lcl|Aclame:pro 290 PGTSLQE-FID------NIRY-YKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT---G-DKSG 357 (479) Q Consensus 290 ~~~~~~~-~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~---g-~~Sg 357 (479) .....++ ... ..+. .+++.++.++ -++-+.+.+...+...++...+.|...+..|-.-..+. | |.|| T Consensus 309 ~~l~~~~~~~~r~~~~~~~r~n~g~~~id~e~-e~~e~~~~~lsgl~~~l~~~~~~iAa~~~IP~t~L~G~sp~GlnatG 387 (537) T protein:vir:10 309 QVLANKQQFDETMSWWTATRDNYQVRVVDKDN-EDVVQIDTTLNDLDKVIMNQYQLVCAIARTPAPKMLGTVPTGFNSTG 387 (537) T ss_pred HhhcCHHHHHHHHHHHHhhcCCcceeEecCCC-ceeEEEeccCCCHHHHHHHHHHHHHhhhCCCceeeccCCccccccch Confidence 2111111 111 1112 2344455442 24444455666778888888888888888886533222 2 3566 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHH-------H-- Q lcl|Aclame:pro 358 VALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAK-------S-- 428 (479) Q Consensus 358 ~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k-------~-- 428 (479) +.=...+. ..++.++..++..+++++++++.... +. ..++++.|++....|..|.|+...+ + T Consensus 388 e~D~~~yy---d~I~~~Qe~l~p~l~~l~~ll~~~~~---~~---~~~~~i~f~pL~~~s~kEkAei~~~~a~a~~~~~~ 458 (537) T protein:vir:10 388 DYEEASYH---EECESTQDDMRPLIDRHHQLVCRSHL---RK---RIRVKVEFPPMDAPKESERADTFLKKMQAAKLAFE 458 (537) T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcC---CC---CcceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH Confidence 65443333 34455555678999999988876421 22 2368999999999999998876433 2 Q ss_pred hccCChHHHHHhCCCCC---------CHH-HHHHHHHHHHH-HHHhhhhccCC-----CCCCCcCCC Q lcl|Aclame:pro 429 TGIVSDETIVSNHPWVE---------DVN-DELERLKKQED-TQKEYDDLIPN-----NQDGVIDET 479 (479) Q Consensus 429 ~g~is~et~~~~l~~~~---------d~~-~El~~i~~E~~-~~~~~~~~~~~-----~~~~~~det 479 (479) .|+++.+++++.|.... +.. +..+....+.+ ...+..+..++ ..+..++++ T Consensus 459 ~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (537) T protein:vir:10 459 MGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAEDIDVDDEGKPVRIIEDQPAPSEMFGATSSGESA 525 (537) T ss_pred cCCCCHHHHHHHHhccCccccccccCCCChhhhhcccCCccCCcCCCCCCCCCccccCCCCcccccc Confidence 47899988887764211 000 11111111000 00011111111 111122222 No 117 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.23 E-value=5.1e-11 Score=77.00 Aligned_cols=406 Identities=9% Similarity=0.032 Sum_probs=187.0 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHH---HHHHHHhccCCcccccccccccccccccccccCccee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKY---KQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA 77 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri 77 (479) |-+.|-..+..+.. .....+...+..+-.......| ..+.++|...--+ .+ +.... + - T Consensus 84 ~~~a~~~~~~~~~~----~~~Dgl~n~~~~lG~~~~~s~y~~~~~~~~~~~~~~f~---------gy-ql~al----Y-~ 144 (862) T protein:vir:99 84 MDSAVRSAIKAITG----FAMDDGGGAPVPIGAEGKQSSYAVPEALQDWYLSQGFI---------GH-QACAL----I-A 144 (862) T ss_pred chhhcchhhhhhhh----hhhhcchhhhhhccccccccccccchhccccccccCcc---------cH-HHHHH----H-H Confidence 22222111100000 0000011111111000000000 0111222211000 00 00000 0 1 Q ss_pred ecchHHHHHHHHHhhhhccCeeecCCc-------hhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCC-CCc-- Q lcl|Aclame:pro 78 INNYHKLLVDQKVGYSVGNPIVFNADD-------DNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINR-KGE-- 147 (479) Q Consensus 78 ~~n~~~~iv~~~a~~l~g~~~~~~~~~-------~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~~~-- 147 (479) ...+++.+|+.++.-++.+++++.+.+ +....+...|..-++...+.++.+.+-.||.+++++..+. |+. T Consensus 145 ~~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL~v~~~l~eair~~RLyGga~ililv~~~D~~~L 224 (862) T protein:vir:99 145 QHWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVEFKVKENLIEFNRFKNVFGIRVAIFVVDSEDPDYY 224 (862) T ss_pred hCchhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEEecCcCchhh Confidence 357889999999999999999998632 1222333444445678888888888888998877765432 221 Q ss_pred -------------e-EEEEEccceeEEEE---cCCCCCceEEE-EEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccc Q lcl|Aclame:pro 148 -------------F-KYVIIPAEEAIPIW---DSKRQRELVAF-IRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFI 209 (479) Q Consensus 148 -------------~-~i~~~~p~~~~~~~---d~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~ 209 (479) + .|.+++|..+.+.- ...+...+-++ -..|.+ .+. .+.+.++..|.. T Consensus 225 sqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~I---~g~------~IH~SRliif~g------ 289 (862) T protein:vir:99 225 EKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWII---SGQ------KYHRSHLIIARG------ 289 (862) T ss_pred hcCcCcccccccceeEEEEechhhhcccccccccccccccccCCceeeee---cCe------eeccceeEEecC------ Confidence 1 24445544443310 00000000000 011110 000 011111111110 Q ss_pred cccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC Q lcl|Aclame:pro 210 QEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY 289 (479) Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~ 289 (479) ...+..+. | .++.+|+|.++.+.+.+..++.+.......+..++...+.+.+. T Consensus 290 ---------------------~~vpd~lk--~----ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~v~ktd~l 342 (862) T protein:vir:99 290 ---------------------PQPADILK--P----TYIFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTTAIHTDTA 342 (862) T ss_pred ---------------------CCchhhhh--c----cCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeechhH Confidence 00000000 0 13457999999999999999988888877777777776665544 Q ss_pred Cccchhh-HH------HHhhc-ccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc---c-cccH Q lcl|Aclame:pro 290 PGTSLQE-FI------DNIRY-YKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT---G-DKSG 357 (479) Q Consensus 290 ~~~~~~~-~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~---g-~~Sg 357 (479) .....++ .. ...+. .+++.++.+.+.+. .+.+...+...++...+.|...+..|-.-..+. | |+|| T Consensus 343 ~~l~~ed~l~~r~~~~~~~rdN~Gi~liD~eEe~e~--ls~slSGL~dll~~~~q~IAaas~IP~tiLfGqspaGlnATG 420 (862) T protein:vir:99 343 KAIANEDKFIQRLMFWVRYRDNHAVKVLGTDETMEQ--FDTSLADFDAVIMGQYQLVASIAKTPATKLLGTAPKGFNSTG 420 (862) T ss_pred hhhccHHHHHHHHHHHHhccCcceeEEecCCCceeE--EecccCChHHHHHHHHHHHHhhhCCCceeecccCcccccCch Confidence 2211111 11 11122 23455555544444 445666778888888888888888886533222 3 3567 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHH-------H- Q lcl|Aclame:pro 358 VALKFLYSLLDLKCSKT-EKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAK-------S- 428 (479) Q Consensus 358 ~Ai~~~~~~l~~k~~~~-~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k-------~- 428 (479) +.=...|... +..+ +..+...|++++.++..-+ + .+ .++++.|++....|..|.|+...+ + T Consensus 421 E~D~~nYyD~---I~s~QE~~L~P~LerL~~li~~~l---g-~~---~d~~ieFnpL~~~sekEkAEi~kk~Aea~~~lv 490 (862) T protein:vir:99 421 EFETISYHEE---LESIQEHVYMPFLQRHYLISRLSL---G-IQ---HEIDVVMEPVASMTAQQQADLNKTKAEGGKVLI 490 (862) T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc---C-CC---CcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH Confidence 6433333333 3333 3567888888877654322 1 22 368999999999999998886543 2 Q ss_pred -hccCChHHHHHhC------C--CCCCHHHHH-HHHHHHHHHHHh----hhhccCC--CCCC------CcCCC Q lcl|Aclame:pro 429 -TGIVSDETIVSNH------P--WVEDVNDEL-ERLKKQEDTQKE----YDDLIPN--NQDG------VIDET 479 (479) Q Consensus 429 -~g~is~et~~~~l------~--~~~d~~~El-~~i~~E~~~~~~----~~~~~~~--~~~~------~~det 479 (479) +|+++.+.++.+| + .+++.+.|- .-+..+..+..+ .....+. ...+ ++|+. T Consensus 491 ~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d~~~~~e~~~~~e~~g~a~~~ap~de~~aga~~~~~e~d~~ 563 (862) T protein:vir:99 491 DGGVISPDEERNRIRDDKRSGYNRLTKEDAEETPGASPENLAAYQKAGAAQETASAKETQAGAAVTTAEGDQP 563 (862) T ss_pred hcCCCCHHHHHHHHHhcCCcCCCCCCcccccccCCCCcccccccccCCcccccccccccccccCCccccCCcc Confidence 5789998887753 2 222211110 001111110000 0000000 0000 01111 No 118 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=99.20 E-value=6.5e-10 Score=70.93 Aligned_cols=444 Identities=11% Similarity=0.020 Sum_probs=207.3 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |.+ ++..+. ..+.+..+ .+..+|.+.....+++|+ +-+|++..+............+.+.++.-+ T Consensus 1 m~~----d~~~~~--------~~l~~r~~-~l~~~R~~~e~~w~e~~~--~~lP~~~~~~~~~~~~~~~~~~~~~~~~ds 65 (549) T protein:vir:10 1 MTN----DDAKIL--------QALNADHG-RMKEKRQSYEAVWNDVID--YLMPRLDKFGQLPRPDSEKGRERSQKMFDS 65 (549) T ss_pred CCc----chHHHH--------HHHHHHHH-HHHHHhhhHHHHHHHHHH--HhccccccccccCCCCCCcccccccccccc Confidence 322 111111 12222232 234445554455555554 223332222111111111222334456667 Q ss_pred hHHHHHHHHHhhhhcc--C-----eeecCCch------hHHHHHHH--------H--HhcCHHHHHHHHHHHHHhCCeEE Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGN--P-----IVFNADDD------NLTKLLND--------L--LGEEFDDTITELYLNASNKGVEW 137 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~--~-----~~~~~~~~------~~~~~~~~--------~--~~n~~~~~~~~~~~~~~~~G~~~ 137 (479) .+...++.+|+.|++- | +++...++ .....+.. + ...+|.....++.++...+|.++ T Consensus 66 tg~~a~~~LAs~l~~~ltpp~~~wF~l~~~~~~~~e~~~v~~~l~~ve~~~~~~~~~~~snf~~~~~~~~~~L~~~Gta~ 145 (549) T protein:vir:10 66 TAPLALRNFVAAMDSMITPATQLWHRLKTGNDALNEIASVKAYLQGVVRTLFAARYRWQGGFVTQMGATYQSIGLFGPGA 145 (549) T ss_pred hHHHHHHHHHHHHHhhccCCCCccccccCCccchhhhhHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhhccee Confidence 7778888888777643 2 22333322 12222221 1 24678888899999999999999 Q ss_pred EEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeee-------------------cccCceEEEEEEEeCCcE Q lcl|Aclame:pro 138 LHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIE-------------------DIDGNKIKRVEYYTENDI 198 (479) Q Consensus 138 ~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~-------------------~~~~~~~~~~~~y~~~~i 198 (479) +++..+..+.+++..++..++++--|.. ..+..++|.++.. ..+.+....+++|+. T Consensus 146 l~~~~~~~~~~~f~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~v~~~--- 220 (549) T protein:vir:10 146 LMIEHDVGKGIVYRNVPMQRLWFAENNS--GLIDKTHVQWELTLRQAAQRFGRENLSPSMQSTLEKDPEKSAIFYHA--- 220 (549) T ss_pred eEEeecCCCeeEEEEEEcCeEEEeeCCC--CCeEEEEEEeecCHHHHHHhcCcccCCHHHHHHhhcCCCceEEEEEE--- Confidence 9998877677888999988888766643 4455555544331 011122334444421 Q ss_pred EEEEEcCCc-----cccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 TYFIERGNS-----FIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNN 268 (479) Q Consensus 199 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~ 268 (479) +..... ......+........ .+... ....+|..+|++.+. ++.+|+|-.++..+-+..+|.. T Consensus 221 ---V~pr~~~~~~~~~~~~~pf~sv~~e~--~~~~i--l~esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l 293 (549) T protein:vir:10 221 ---VEPRADRDPRKLDGRNMQFASYWLDE--GRDRI--VQNSGFRTFPFAIGRFYVGTDDVYGGSPAYDAMPDVRMANDM 293 (549) T ss_pred ---eecCCCCCccccccccCceEEEEEEe--cCCEe--eccCCcccCCcceeeeeecCCCccccchHHHHHHHHHHHHHH Confidence 110000 000000000000000 01111 112345566776553 3468999999999999999999 Q ss_pred HHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccce----ecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 269 ISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSI----KVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQG 344 (479) Q Consensus 269 ~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~ 344 (479) .-......+....|.+.+...+.... .....+... ...++..+..+....+....+..++.++..|...-.. T Consensus 294 ~~~~l~~~~~~~~p~~~v~~~g~~~~----~~l~pgg~~~~~~~~~~~~~~~pl~~~~~~~~~~~~i~~~~~rI~~af~~ 369 (549) T protein:vir:10 294 AKTNIRGAQKLVDPPLLANEDGVLDG----FDLRSGALNWGGLNDKGEEMVKPLLTGKQAQIGIEFAQDTRQTINQWFYV 369 (549) T ss_pred HHHHHHHHHHHhcCceeecccccccc----ceeccCCccccccCCCCccceeeeccccchhHHHHHHHHHHHHHHHHHhh Confidence 99999999999999887643221111 112222222 1223334566555556666777778777777654433 Q ss_pred CCCcc-cccccccHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHhcCCCcc-------ccceeeEEeC Q lcl|Aclame:pro 345 VNPES-QNTGDKSGVALKFLYSLLDLKCSK----T-EKKFKKAIRELLWFVCEYLKISGNKSY-------DYKTVQITFN 411 (479) Q Consensus 345 ~~~~~-~~~g~~Sg~Ai~~~~~~l~~k~~~----~-~~~~~~~l~~~~~li~~~~~~~~~~~~-------~~~~i~i~f~ 411 (479) ..+.. .+....||+.+............- . ...+.+-+.+.+.+ +...+..+. +...++|.|. T Consensus 370 d~~~~~~~~~~~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~R~~~i----l~r~g~lP~~p~~l~~~~~~~~i~yi 445 (549) T protein:vir:10 370 TLFQILVDSGDMTATEVLQRAQEKGVLLAPTLGRTQSELLGPMIAREVDI----LAEAGQLPDMPQELIDAGADVDVEYD 445 (549) T ss_pred hhhhhhcCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCCCChhhhcCCceeEEEee Confidence 22221 133457888877654444444322 1 12222333333333 333333221 2335667765 Q ss_pred CCCCCCH-HHHH-------HHHHHHhcc-------CChHHHHHh----CCCCCC---HHHHHHHHHHHHHHHHhhhhcc- Q lcl|Aclame:pro 412 HSMIINE-AEKI-------DMAAKSTGI-------VSDETIVSN----HPWVED---VNDELERLKKQEDTQKEYDDLI- 468 (479) Q Consensus 412 ~~~p~d~-~e~a-------~~~~k~~g~-------is~et~~~~----l~~~~d---~~~El~~i~~E~~~~~~~~~~~- 468 (479) .++-+.. .+.+ +.+..++++ +....++.. +|.-.+ .++|++++.++++++....+.. T Consensus 446 s~La~aq~~~~~~~i~~~~~~~~~laq~~Pe~ld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~~~~~qqq~~~~~~ 525 (549) T protein:vir:10 446 SPLNKAMRAGEGAAILQWLQQLGIVSQFDPAAAKVPNGARIARLLADYGGVPVEAMSTDEELQAQQAAEAQAAQMQQMLA 525 (549) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHhcCCHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHH Confidence 5554421 1111 122222222 222233332 221111 3466666554433222111111 Q ss_pred --C-------C-CCCCCcCCC Q lcl|Aclame:pro 469 --P-------N-NQDGVIDET 479 (479) Q Consensus 469 --~-------~-~~~~~~det 479 (479) . + -+..-.+.| T Consensus 526 ~a~~a~~~a~~~~~~~ta~~~ 546 (549) T protein:vir:10 526 AAPVAAGAIKDLSDAQTAAQT 546 (549) T ss_pred HHHHHHHHHHhhhhhcCCCcc Confidence 0 0 001122333 No 119 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.19 E-value=5.2e-10 Score=71.49 Aligned_cols=426 Identities=11% Similarity=0.053 Sum_probs=202.1 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHH----HHHHhhHHH--HH-HHHHHhccCCccccc---cccccccccccccc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEH----YILKHRPEK--YK-QGEEYYYGNTDVNNK---RRYYLLDGAKVDDF 70 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~~--~~-~~~~yy~g~~~~~~~---~~~~~~~~~~~~~~ 70 (479) |.++--++--+|......+..-.-.+.=.| +...|.... +. ...+=+.+.-..... .............. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~ 80 (532) T protein:vir:94 1 MADTDPTPRPEITYATLQQAQRVDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNALSFVEAT 80 (532) T ss_pred CCCCCCCCCcceehhhhhhHhhhhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccCccccccccccccccc Confidence 888777777777666554443322222111 011111100 00 000000000000000 00000000000000 Q ss_pred ccCcce-----eecchHHHHHHHHHhhhhccCeeecCCch------hHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEE Q lcl|Aclame:pro 71 TKVNNK-----AINNYHKLLVDQKVGYSVGNPIVFNADDD------NLTKLLNDLLGEEFDDTITELYLNASNKGVEWLH 139 (479) Q Consensus 71 ~~~~~r-----i~~n~~~~iv~~~a~~l~g~~~~~~~~~~------~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~ 139 (479) ....+. -...+++.+|+.+|.-++.++++++++++ ....+...|..=++...+.++.+.+-.||.++++ T Consensus 81 ~~~~~~l~a~Y~~~~l~r~~Vd~~aed~~r~~~~i~~~~~~~~~~~~~~~i~~~~~~l~v~~~l~~a~~~~rlyG~a~i~ 160 (532) T protein:vir:94 81 SWPGFPTLALLAQLPEYRTMHETPADECVRAWGKITCSSKDELAADKATRITQKLEQYNVRTLVRTVVIHDQAYGGAHVF 160 (532) T ss_pred ccchHHHHHHHHcCchhhhhhccchHHHhhCCceEeeCCccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhcccceEEE Confidence 001000 13567899999999999999999977432 1222223343336777888899999999999888 Q ss_pred EEeCCCCc--------------------eEEEEEccceeEEE-EcCCCCCceEEE-EEEEeeecccCceEEEEEEEeCCc Q lcl|Aclame:pro 140 PYINRKGE--------------------FKYVIIPAEEAIPI-WDSKRQRELVAF-IRFYYIEDIDGNKIKRVEYYTEND 197 (479) Q Consensus 140 v~~d~~~~--------------------~~i~~~~p~~~~~~-~d~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~y~~~~ 197 (479) +..+.++. ..+.+++|.++.|- |+..+...+-++ ..+|.+. .+ .-+.+.+ T Consensus 161 i~v~~~~~~~~~~~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v~--~g------~~iH~SR 232 (532) T protein:vir:94 161 PHLKMDGDSVPADAPLLLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWIAT--SG------KKIHSSR 232 (532) T ss_pred EEeccCCccccccccccccccccccceeeEEEeechheecccccccccccccccCCceeEEEc--cC------eeeccce Confidence 76643321 12445555555442 111111111110 0111110 00 0111222 Q ss_pred EEEEEEcCCccccccccccccccccccccccccccccccccccceEE-ecCCCCCCchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 198 ITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIP-FKNNEKCVSDLTFYKSLIDIYDNNISTLADNL 276 (479) Q Consensus 198 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~-~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~ 276 (479) +.+|... .+|-.. -.++.+|+|.+..+.+-+..++.+.-.....+ T Consensus 233 li~f~g~----------------------------------~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~ 278 (532) T protein:vir:94 233 IHTVVGR----------------------------------PVGDMLKAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTV 278 (532) T ss_pred EEEecCC----------------------------------CchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 2222110 011110 01234699999999999999988887777767 Q ss_pred HHhccceeeeecCCccc----hhhHHH------Hhhc-ccceecCCC-CcceeeecCCCHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 277 DEIQEVIYVLKEYPGTS----LQEFID------NIRY-YKSIKVDGG-GGVDKLEINIPVEAKKELLDRLEKNIIIFGQG 344 (479) Q Consensus 277 ~~~~~p~l~~~g~~~~~----~~~~~~------~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~ 344 (479) ..++...+.. +..... ...... ..+. .+++.++.+ .+++. .+.+...+...++...+.|...+.. T Consensus 279 ~~~~~~v~k~-~~a~~ls~~~~~~~~~r~~~~~~~~~n~g~~~id~~~e~~e~--~~~~lsgl~~~l~~~~~~iAaa~~I 355 (532) T protein:vir:94 279 KQFSMTNLAT-DMAQLLAPGGAQSLDARLQLFNLYRDNRNIGALDKGTEEIQQ--TNTPLSGLDSLQAQSQEQMAAVSHI 355 (532) T ss_pred HhcCCceeee-chHHhhcchhHHHHHHHHHHHHhhcCCccceEEcCCCceeEE--EecccCCHHHHHHHHHHHHHhHhCC Confidence 6666665543 211111 111111 1111 223444433 33444 4455667788888888988888888 Q ss_pred CCCccccc---c-cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHH Q lcl|Aclame:pro 345 VNPESQNT---G-DKSGVALKFLYSLLDLKCSKTE-KKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEA 419 (479) Q Consensus 345 ~~~~~~~~---g-~~Sg~Ai~~~~~~l~~k~~~~~-~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~ 419 (479) |-.-..+. | |.||+.=... -+..++.++ ..+...+++++++++... .+..+ .++++.|++....+.. T Consensus 356 P~t~LfG~sp~GlnstGe~D~~~---yyd~I~s~Qe~~l~p~le~l~~~l~~s~--~g~~~---~d~~~~f~pL~~~s~k 427 (532) T protein:vir:94 356 PLVKLLGITPNGLNASSDGEIRV---WYDFIAGYQATNLTPLMEWIIDLIQLSE--YGQID---PGLAWEWSPLMELDDK 427 (532) T ss_pred CeeeeecCCcccccccchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCC---CCceEEeCCCCCCCHH Confidence 86533222 2 3456643332 334444444 557888898888886532 22222 3588999999999999 Q ss_pred HHHHHHHH-------H--hccCChHHHHHhCCCCC------C--HHHHHH---HHHHHHHHHH-hhhhccCC----CCCC Q lcl|Aclame:pro 420 EKIDMAAK-------S--TGIVSDETIVSNHPWVE------D--VNDELE---RLKKQEDTQK-EYDDLIPN----NQDG 474 (479) Q Consensus 420 e~a~~~~k-------~--~g~is~et~~~~l~~~~------d--~~~El~---~i~~E~~~~~-~~~~~~~~----~~~~ 474 (479) |.|+...+ + .|++|.+.+.+++..-. + ..++++ .+.++..... ...+..+. ..+. T Consensus 428 EkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (532) T protein:vir:94 428 ELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALNPPATAPQTPNPQPDS 507 (532) T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCCCC Confidence 98876533 2 47899988887764211 1 111221 1111111110 00011110 0112 Q ss_pred CcCCC Q lcl|Aclame:pro 475 VIDET 479 (479) Q Consensus 475 ~~det 479 (479) ..|++ T Consensus 508 ~~d~~ 512 (532) T protein:vir:94 508 EDDQT 512 (532) T ss_pred CCCCC Confidence 33333 No 120 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=99.13 E-value=1.5e-09 Score=69.04 Aligned_cols=441 Identities=10% Similarity=0.042 Sum_probs=204.8 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHH---HHHHHHHhccCCcccccccccccccccccccccCccee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEK---YKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA 77 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri 77 (479) |+ ++. ..+.......+..+. +..+|... .+.+.+|..-. .... +. ........++ T Consensus 1 m~------~~~----~~~~~~~~~k~r~~~-l~~~R~~~e~~w~e~~~~~lP~---~~~~-----~~---~~~~~~~~~~ 58 (535) T protein:vir:15 1 MA------DSK----RTGLGEDGAKATYDR-LTNDRRAYETRAENCAQYTIPS---LFPK-----ES---DNESTDYTTP 58 (535) T ss_pred CC------ccc----hhccchHHHHHHHHH-HHHHhhHHHHHHHHHHHHhccc---ccCC-----CC---Cccccccccc Confidence 33 222 112222333334433 33334333 34444443321 1000 00 0001111234 Q ss_pred ecchHHHHHHHHHhhhhcc--C----eeecCCc-------------hhHHHHH--------HHHHhcCHHHHHHHHHHHH Q lcl|Aclame:pro 78 INNYHKLLVDQKVGYSVGN--P----IVFNADD-------------DNLTKLL--------NDLLGEEFDDTITELYLNA 130 (479) Q Consensus 78 ~~n~~~~iv~~~a~~l~g~--~----~~~~~~~-------------~~~~~~~--------~~~~~n~~~~~~~~~~~~~ 130 (479) .-+-+...++.+|+.|++- | +++...+ .+.+..+ ..+..++|.....++.++. T Consensus 59 ~dst~~~a~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L 138 (535) T protein:vir:15 59 WQAVGARGLNNLASKLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQL 138 (535) T ss_pred ccccHHHHHHHHHHHHHHhhcCCCcccccccChHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH Confidence 4556667777777766543 2 1222221 1122222 2244578999999999999 Q ss_pred HhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecc---------------cCceEEEEEEEeC Q lcl|Aclame:pro 131 SNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDI---------------DGNKIKRVEYYTE 195 (479) Q Consensus 131 ~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~y~~ 195 (479) .++|.+.+++..+..+.++++.++-.++++.-|.. .++...+|.++..-. +.+....+++|+. T Consensus 139 ~~~G~a~l~~~~~~~~~~~f~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~ 216 (535) T protein:vir:15 139 IVAGNALLYLPEPEGSYNPMKLYRLSSYVVQRDAY--GNVLQIVTRDQIAFGALPEDVRSAVEKAGGEKKMDEMVDVYTH 216 (535) T ss_pred HhhCceeEEeecCCCCceeeEEEEcCeeEEeeCCC--CCeeEEEEeEeecHHHHHHHHhHhhhccccccCCCCceeEEEE Confidence 99999998887777677888888877776655443 456556665554300 0011112233321 Q ss_pred CcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 196 NDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNIS 270 (479) Q Consensus 196 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s 270 (479) - +...+++.+.. ................+|..+|++.+. ++.+|+|-.++..+-+..+|...- T Consensus 217 v---~~~~~~~~~~~---------~~e~~g~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~ 284 (535) T protein:vir:15 217 V---YLDEESGDYLK---------YEEVEDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQE 284 (535) T ss_pred E---EEecCCCcEEE---------EEEeeCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHH Confidence 0 01111111110 011111111112233467777877654 356899999999999999999999 Q ss_pred HHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeeec--CCCHHHHHHHHHHHHHHHHHHhCCCCCc Q lcl|Aclame:pro 271 TLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEI--NIPVEAKKELLDRLEKNIIIFGQGVNPE 348 (479) Q Consensus 271 ~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~s~~~~~~ 348 (479) ......+....|.+.+.-.+........ ... .+.+.....++++.+.. ..+.......++.++..|...-....+. T Consensus 285 ~~l~~~~~~~~p~~lv~~~g~~~~~~l~-~~~-~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~~~~ 362 (535) T protein:vir:15 285 AIVKMSMISAKVIGLVNPAGITQPRRLT-KAQ-TGDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFMLNSAV 362 (535) T ss_pred HHHHHHHHHhcCceeecccccccchhcc-cCC-ceeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhcc Confidence 9999999999998765422222211111 111 12233344455666543 3456667777777777775543322222 Q ss_pred ccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceeeEEeCCCCCCC-HHHHHHHH Q lcl|Aclame:pro 349 SQNTGDKSGVALKFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNK-SYDYKTVQITFNHSMIIN-EAEKIDMA 425 (479) Q Consensus 349 ~~~~g~~Sg~Ai~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~~i~i~f~~~~p~d-~~e~a~~~ 425 (479) .-+....||+.+..+.........- ..+.-.+.+.-+++-++.++...+.. ..+...+++.|.-++..- ..+.++.+ T Consensus 363 ~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~yis~La~aqr~~~~~~l 442 (535) T protein:vir:15 363 QRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPELPKEAVEPTISTGLEAIGRGQDLDKL 442 (535) T ss_pred cCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEecHHHHHHHHHHHHHH Confidence 2233456888877644443333321 11122222233333333333333332 233445777776655532 11122222 Q ss_pred ----HHHhcc--------CChHHHHHh----CCCC----CCHHHHHHHHHHHHHHHHhhhhccCC-CCCCCcCCC Q lcl|Aclame:pro 426 ----AKSTGI--------VSDETIVSN----HPWV----EDVNDELERLKKQEDTQKEYDDLIPN-NQDGVIDET 479 (479) Q Consensus 426 ----~k~~g~--------is~et~~~~----l~~~----~d~~~El~~i~~E~~~~~~~~~~~~~-~~~~~~det 479 (479) ..++++ +....++.. +|.- --.++|++++.++++++....+.+.. ...-.+..| T Consensus 443 ~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~~~~eev~~~~~q~~~~~~~~~~a~~~g~~~~~~~~ 517 (535) T protein:vir:15 443 ERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAAQTGIENAAATGGAGVGALAT 517 (535) T ss_pred HHHHHHHHhcChhhhhccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhc Confidence 222222 222233322 2211 11345665555443332222111110 000011111 No 121 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.13 E-value=5.4e-11 Score=76.87 Aligned_cols=385 Identities=13% Similarity=0.063 Sum_probs=184.6 Q ss_pred CCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhh--HHHHHHHHHHhccCCcccccccccccc---cccccccccCcce Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKESTINLVKVIEHYILKHR--PEKYKQGEEYYYGNTDVNNKRRYYLLD---GAKVDDFTKVNNK 76 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~yy~g~~~~~~~~~~~~~~---~~~~~~~~~~~~r 76 (479) |-. ++.++. ..+-+-+...+.++-.... +...... ........ T Consensus 1 ~~~--------------------------~m~~~~~~~~~~D~~~~~~~~~~g~~~-~~~~~~~~~~~~~l~~~Y----- 48 (435) T protein:vir:79 1 MGV--------------------------FMSDKVKAITKEDGYNEIFGSKDGTFR-PNAFYMQRAAFKALSQFY----- 48 (435) T ss_pred CCc--------------------------ccccccccchhhcchhhhhcccccccc-cCcccCCcCCHHHHHHHH----- Confidence 111 111110 1111112222222111100 0000000 00000000 Q ss_pred eecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCC----------C Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRK----------G 146 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~----------~ 146 (479) -...+++.+|+.+|.-++.+++.++++++. ..+...|..=++...+.++.+.+..||.+++++-.... | T Consensus 49 ~~~~l~~~~Vd~~aed~~r~g~~i~g~~~~-~~~~~~~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g 127 (435) T protein:vir:79 49 EEDGMARRIVDVIPEEMVTPGFKVDGVKNE-KSFKSRWDELRLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGA 127 (435) T ss_pred hcCchhhhhhccchHHhhcCCceecCCChH-HHHHHHHHHhhHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCC Confidence 135788999999999999999999876532 22233344336778889999999999999888865321 1 Q ss_pred ce-EEEEEccceeEEEEcCCCCCceEEE-EEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccc Q lcl|Aclame:pro 147 EF-KYVIIPAEEAIPIWDSKRQRELVAF-IRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQ 224 (479) Q Consensus 147 ~~-~i~~~~p~~~~~~~d~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (479) .+ .+.+++|.++.|-.-+.++..+-++ ...|.+....+.. ... +.+.++..|.. T Consensus 128 ~i~~i~v~d~~~i~~~~~~~dp~sp~fg~P~~y~v~~~~~~~--~~~-iH~SRli~~~g--------------------- 183 (435) T protein:vir:79 128 QLEDIRVYDRYQITIHERETNARSVRYGEPKLYKISPGGDIP--EFF-VHYSRICIIDG--------------------- 183 (435) T ss_pred ceeeEEeechhhccchhhccCCcccccCcceEEEEecCCCCC--ceE-EcceeEEEecC--------------------- Confidence 12 2444555444331100111111000 1112221111000 000 11111111110 Q ss_pred ccccccccccccccccceE-EecCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcc---ch-h-hH Q lcl|Aclame:pro 225 EGHFRINNKEQGWGKVPFI-PFKNNEKCVSDL-TFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGT---SL-Q-EF 297 (479) Q Consensus 225 ~~~~~~~~~~~~~g~vPvv-~~~n~~~g~s~~-~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~---~~-~-~~ 297 (479) .. +|-. ...++.+|.|.+ +.+.+-+..++.+.......+...+...+.+++.... .. . .. T Consensus 184 ------~~-------~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~~~~~~~~~ 250 (435) T protein:vir:79 184 ------ER-------VSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLLRRKQQAVWKARDLALMCDDEEGRYAA 250 (435) T ss_pred ------Cc-------chhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHhhcCccchHHH Confidence 00 1111 112456688876 6788888888888888777777766666655543111 10 1 11 Q ss_pred HH------Hhh-cccceecCC-CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc---c-cccHHHHHHHHH Q lcl|Aclame:pro 298 ID------NIR-YYKSIKVDG-GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT---G-DKSGVALKFLYS 365 (479) Q Consensus 298 ~~------~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~---g-~~Sg~Ai~~~~~ 365 (479) .. ..+ .+..+.+.+ +.+.+.+ +.+..++...++.....|...+..|-.-..+. | |.||+.-...|. T Consensus 251 ~~r~~~~~~~~~~~~~~~i~~~~e~~e~~--~~~lsgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~glnstgd~d~~~yy 328 (435) T protein:vir:79 251 RLRLAQVDDESGVGKAIGIDATDEEYEVL--NSDVSGVPEFLQEKIDRIVALTGIHEIIIKNKNTGGVSASQNTALETFY 328 (435) T ss_pred HHHHHHHHHhcCCCCceeEecCCcceEEE--ecccCCHHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHH Confidence 00 111 123333433 3334444 45566788889999999988888886433222 2 356765443343 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH---------hccCChHH Q lcl|Aclame:pro 366 LLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS---------TGIVSDET 436 (479) Q Consensus 366 ~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~---------~g~is~et 436 (479) ...... .+..+.+.+++++++++.- .++++.|++....|+.|.|+...+. .|+++.+. T Consensus 329 d~i~~~--Qe~~l~p~l~~l~~li~~s-----------~d~~~~f~pL~~~sekEkAei~~~~a~a~~~~~~~g~i~~~e 395 (435) T protein:vir:79 329 KLIDRK--RVEDYKPILEFLLPFMISE-----------TEWSIEFEPLSVPSDKDKAEIMAKNVESVVKLKAEQAINLKE 395 (435) T ss_pred HHHHHH--HHHHHHHHHHHHHHHhhcC-----------CCCeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH Confidence 333222 2456788888888876521 3678999999999999988865543 46778776 Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCcCC Q lcl|Aclame:pro 437 IVSNH----PWVEDVNDELERLKKQEDTQKEYDDLI-PNNQDGVIDE 478 (479) Q Consensus 437 ~~~~l----~~~~d~~~El~~i~~E~~~~~~~~~~~-~~~~~~~~de 478 (479) +.+.| +...-.......+. +..+.. ....++++++ T Consensus 396 ~r~~L~~~~~~~~~~~~~~~~~~-------~~~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 396 TRDTLRSICPDLKIMDNDNIELP-------EPEDLDPEPGQEGGLNK 435 (435) T ss_pred HHHHHHHhccccCCCCcccccCC-------ccccCCCCCCCCCCCCC Confidence 65543 11100000111111 111111 2233334444 No 122 >protein:vir:98506 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996583;genbank:gi:45569514;genbank:GeneID:2767834 Probab=99.11 E-value=1.8e-09 Score=68.53 Aligned_cols=448 Identities=10% Similarity=-0.015 Sum_probs=207.6 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |.+- .....+.+..+. +.++|.......+++|+ +-+|++..+...+. ....+.+.++.-+ T Consensus 1 M~~~--------------~~~~~l~~r~~~-l~~~R~~~e~~w~e~~~--~~lP~~~~~~~~~~---~~~~~~~~~~~ds 60 (555) T protein:vir:98 1 MAEQ--------------TERKLLLSRWGQ-LRTERESWMSHWKEISD--YLLPRAGRFFVQDR---NRGEKRHNNILDN 60 (555) T ss_pred CCCc--------------ccHHHHHHHHHH-HHHHhhHHHHHHHHHHH--HhCcccccccCCCC---Ccchhcccccccc Confidence 2211 122234444443 33334443444444444 22232221111111 1112234456667 Q ss_pred hHHHHHHHHHhhhhcc--C-----eeecCCc------hhHHHHH--------HHHHhcCHHHHHHHHHHHHHhCCeEEEE Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGN--P-----IVFNADD------DNLTKLL--------NDLLGEEFDDTITELYLNASNKGVEWLH 139 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~--~-----~~~~~~~------~~~~~~~--------~~~~~n~~~~~~~~~~~~~~~~G~~~~~ 139 (479) -+...++.+|+.|++- | +++...+ .+++..+ ..+..++|.....++.++...+|.+.++ T Consensus 61 t~~~a~~~LAa~L~~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~ 140 (555) T protein:vir:98 61 TGTRALRVLAAGMMAGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSI 140 (555) T ss_pred cHHHHHHHHHHHHHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEE Confidence 7788888888777543 2 2233322 1222222 2344578999999999999999999999 Q ss_pred EEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeec-------------------ccCce-EEEEEEEeCCcEE Q lcl|Aclame:pro 140 PYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIED-------------------IDGNK-IKRVEYYTENDIT 199 (479) Q Consensus 140 v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~-------------------~~~~~-~~~~~~y~~~~i~ 199 (479) +..|..+.+++..++..++++--|.. .++..++|.++..- .+.+. -..+++++. ++ T Consensus 141 ~~~d~~~~~rf~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~--V~ 216 (555) T protein:vir:98 141 VLPDFDAVVYHHSLTAGEYAIAADNQ--GRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHA--IE 216 (555) T ss_pred EecCCCceEEEEEeecceeEEeeCCC--CCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEE--Ee Confidence 88887777889999999988755543 35566565443321 01111 112332211 00 Q ss_pred EEEEcC--CccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 YFIERG--NSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTL 272 (479) Q Consensus 200 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~ 272 (479) . +... +.......+.....+....++... ...-+|..+|++.+. .+.+|+|-.++..+-+..+|...-.. T Consensus 217 p-r~~~~~~~~~~~~~p~~s~~~~~~~d~~~v--l~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~ 293 (555) T protein:vir:98 217 P-RADRDPSKRDDRNMAWKSVYFEPGADETRT--LRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRK 293 (555) T ss_pred e-ccCcCcCCCCccccceEEEEEEeccCCccc--cccCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHH Confidence 0 0000 000000000000000001111111 122245567776554 34689999999999999999988888 Q ss_pred HHHHHHhccceeeeecCCccchhhHHHHhhcccceecCC--CCc-ce-eeecCCCHHHHHHHHHHHHHHHHHHhCCC--- Q lcl|Aclame:pro 273 ADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDG--GGG-VD-KLEINIPVEAKKELLDRLEKNIIIFGQGV--- 345 (479) Q Consensus 273 ~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~l~~~i~~~s~~~--- 345 (479) ...++....|.+.+....... ......+++..... .++ .. ......+.....+.++.++..|...-... T Consensus 294 l~~~~~~~~pp~~v~~~~~~~----~~~~~pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~ 369 (555) T protein:vir:98 294 AQAIDYKSNPPLQLPVSAKNQ----DISTVPGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASFYADLFL 369 (555) T ss_pred HHHHHHHhcCceeeccccccc----cceeccccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHhhcchhh Confidence 888888888877654322111 12223333322221 222 12 22333456667777888888775544322 Q ss_pred CCcccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCc-----cccceeeEEeCCCCCCCHH Q lcl|Aclame:pro 346 NPESQNTGDKSGVALKFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNKS-----YDYKTVQITFNHSMIINEA 419 (479) Q Consensus 346 ~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~~-----~~~~~i~i~f~~~~p~d~~ 419 (479) .+...+....||+.+............- ..+...+.+.-+++-.+.++...+..+ .....++|.+..++-+... T Consensus 370 ~l~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~ 449 (555) T protein:vir:98 370 MLANGTNPQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQR 449 (555) T ss_pred hccCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHH Confidence 1333344457888887654444433322 122222233323333333333333221 1223566777666554211 Q ss_pred -H-------HHHHHHHHhcc-------CChHHHHH----hCCCCC---CHHHHHHHHHHHHHHHHhhhhcc------C-- Q lcl|Aclame:pro 420 -E-------KIDMAAKSTGI-------VSDETIVS----NHPWVE---DVNDELERLKKQEDTQKEYDDLI------P-- 469 (479) Q Consensus 420 -e-------~a~~~~k~~g~-------is~et~~~----~l~~~~---d~~~El~~i~~E~~~~~~~~~~~------~-- 469 (479) + .++.+..++++ +....++. .+|.-. -.++|++++.+++++++..+... . T Consensus 450 ~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~ 529 (555) T protein:vir:98 450 AIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADT 529 (555) T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1 11122222332 22223332 233211 13467776666544322211111 0 Q ss_pred CCCCCCcCCC Q lcl|Aclame:pro 470 NNQDGVIDET 479 (479) Q Consensus 470 ~~~~~~~det 479 (479) ...-+..+-| T Consensus 530 ~~~~~~~~~~ 539 (555) T protein:vir:98 530 AAKLGSVDTS 539 (555) T ss_pred HHHhcccccC Confidence 1111233333 No 123 >protein:vir:107404 Length: 555 # NCBI annotation: Bbp21 # Family: family:all:481 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958690;genbank:gi:41179382;genbank:GeneID:2717198 Probab=99.11 E-value=1.8e-09 Score=68.53 Aligned_cols=448 Identities=10% Similarity=-0.015 Sum_probs=207.6 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |.+- .....+.+..+. +.++|.......+++|+ +-+|++..+...+. ....+.+.++.-+ T Consensus 1 M~~~--------------~~~~~l~~r~~~-l~~~R~~~e~~w~e~~~--~~lP~~~~~~~~~~---~~~~~~~~~~~ds 60 (555) T protein:vir:10 1 MAEQ--------------TERKLLLSRWGQ-LRTERESWMSHWKEISD--YLLPRAGRFFVQDR---NRGEKRHNNILDN 60 (555) T ss_pred CCCc--------------ccHHHHHHHHHH-HHHHhhHHHHHHHHHHH--HhCcccccccCCCC---Ccchhcccccccc Confidence 2211 122234444443 33334443444444444 22232221111111 1112234456667 Q ss_pred hHHHHHHHHHhhhhcc--C-----eeecCCc------hhHHHHH--------HHHHhcCHHHHHHHHHHHHHhCCeEEEE Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGN--P-----IVFNADD------DNLTKLL--------NDLLGEEFDDTITELYLNASNKGVEWLH 139 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~--~-----~~~~~~~------~~~~~~~--------~~~~~n~~~~~~~~~~~~~~~~G~~~~~ 139 (479) -+...++.+|+.|++- | +++...+ .+++..+ ..+..++|.....++.++...+|.+.++ T Consensus 61 t~~~a~~~LAa~L~~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~ 140 (555) T protein:vir:10 61 TGTRALRVLAAGMMAGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSI 140 (555) T ss_pred cHHHHHHHHHHHHHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEE Confidence 7788888888777543 2 2233322 1222222 2344578999999999999999999999 Q ss_pred EEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeec-------------------ccCce-EEEEEEEeCCcEE Q lcl|Aclame:pro 140 PYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIED-------------------IDGNK-IKRVEYYTENDIT 199 (479) Q Consensus 140 v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~-------------------~~~~~-~~~~~~y~~~~i~ 199 (479) +..|..+.+++..++..++++--|.. .++..++|.++..- .+.+. -..+++++. ++ T Consensus 141 ~~~d~~~~~rf~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~--V~ 216 (555) T protein:vir:10 141 VLPDFDAVVYHHSLTAGEYAIAADNQ--GRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHA--IE 216 (555) T ss_pred EecCCCceEEEEEeecceeEEeeCCC--CCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEE--Ee Confidence 88887777889999999988755543 35566565443321 01111 112332211 00 Q ss_pred EEEEcC--CccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 YFIERG--NSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTL 272 (479) Q Consensus 200 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~ 272 (479) . +... +.......+.....+....++... ...-+|..+|++.+. .+.+|+|-.++..+-+..+|...-.. T Consensus 217 p-r~~~~~~~~~~~~~p~~s~~~~~~~d~~~v--l~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~ 293 (555) T protein:vir:10 217 P-RADRDPSKRDDRNMAWKSVYFEPGADETRT--LRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRK 293 (555) T ss_pred e-ccCcCcCCCCccccceEEEEEEeccCCccc--cccCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHH Confidence 0 0000 000000000000000001111111 122245567776554 34689999999999999999988888 Q ss_pred HHHHHHhccceeeeecCCccchhhHHHHhhcccceecCC--CCc-ce-eeecCCCHHHHHHHHHHHHHHHHHHhCCC--- Q lcl|Aclame:pro 273 ADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDG--GGG-VD-KLEINIPVEAKKELLDRLEKNIIIFGQGV--- 345 (479) Q Consensus 273 ~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~l~~~i~~~s~~~--- 345 (479) ...++....|.+.+....... ......+++..... .++ .. ......+.....+.++.++..|...-... T Consensus 294 l~~~~~~~~pp~~v~~~~~~~----~~~~~pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~ 369 (555) T protein:vir:10 294 AQAIDYKSNPPLQLPVSAKNQ----DISTVPGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASFYADLFL 369 (555) T ss_pred HHHHHHHhcCceeeccccccc----cceeccccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHhhcchhh Confidence 888888888877654322111 12223333322221 222 12 22333456667777888888775544322 Q ss_pred CCcccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCc-----cccceeeEEeCCCCCCCHH Q lcl|Aclame:pro 346 NPESQNTGDKSGVALKFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNKS-----YDYKTVQITFNHSMIINEA 419 (479) Q Consensus 346 ~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~~-----~~~~~i~i~f~~~~p~d~~ 419 (479) .+...+....||+.+............- ..+...+.+.-+++-.+.++...+..+ .....++|.+..++-+... T Consensus 370 ~l~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~ 449 (555) T protein:vir:10 370 MLANGTNPQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQR 449 (555) T ss_pred hccCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHH Confidence 1333344457888887654444433322 122222233323333333333333221 1223566777666554211 Q ss_pred -H-------HHHHHHHHhcc-------CChHHHHH----hCCCCC---CHHHHHHHHHHHHHHHHhhhhcc------C-- Q lcl|Aclame:pro 420 -E-------KIDMAAKSTGI-------VSDETIVS----NHPWVE---DVNDELERLKKQEDTQKEYDDLI------P-- 469 (479) Q Consensus 420 -e-------~a~~~~k~~g~-------is~et~~~----~l~~~~---d~~~El~~i~~E~~~~~~~~~~~------~-- 469 (479) + .++.+..++++ +....++. .+|.-. -.++|++++.+++++++..+... . T Consensus 450 ~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~ 529 (555) T protein:vir:10 450 AIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADT 529 (555) T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1 11122222332 22223332 233211 13467776666544322211111 0 Q ss_pred CCCCCCcCCC Q lcl|Aclame:pro 470 NNQDGVIDET 479 (479) Q Consensus 470 ~~~~~~~det 479 (479) ...-+..+-| T Consensus 530 ~~~~~~~~~~ 539 (555) T protein:vir:10 530 AAKLGSVDTS 539 (555) T ss_pred HHHhcccccC Confidence 1111233333 No 124 >protein:vir:107822 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996631;genbank:gi:45580765;genbank:GeneID:2767898 Probab=99.11 E-value=1.8e-09 Score=68.53 Aligned_cols=448 Identities=10% Similarity=-0.015 Sum_probs=207.6 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |.+- .....+.+..+. +.++|.......+++|+ +-+|++..+...+. ....+.+.++.-+ T Consensus 1 M~~~--------------~~~~~l~~r~~~-l~~~R~~~e~~w~e~~~--~~lP~~~~~~~~~~---~~~~~~~~~~~ds 60 (555) T protein:vir:10 1 MAEQ--------------TERKLLLSRWGQ-LRTERESWMSHWKEISD--YLLPRAGRFFVQDR---NRGEKRHNNILDN 60 (555) T ss_pred CCCc--------------ccHHHHHHHHHH-HHHHhhHHHHHHHHHHH--HhCcccccccCCCC---Ccchhcccccccc Confidence 2211 122234444443 33334443444444444 22232221111111 1112234456667 Q ss_pred hHHHHHHHHHhhhhcc--C-----eeecCCc------hhHHHHH--------HHHHhcCHHHHHHHHHHHHHhCCeEEEE Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGN--P-----IVFNADD------DNLTKLL--------NDLLGEEFDDTITELYLNASNKGVEWLH 139 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~--~-----~~~~~~~------~~~~~~~--------~~~~~n~~~~~~~~~~~~~~~~G~~~~~ 139 (479) -+...++.+|+.|++- | +++...+ .+++..+ ..+..++|.....++.++...+|.+.++ T Consensus 61 t~~~a~~~LAa~L~~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~ 140 (555) T protein:vir:10 61 TGTRALRVLAAGMMAGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSI 140 (555) T ss_pred cHHHHHHHHHHHHHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEE Confidence 7788888888777543 2 2233322 1222222 2344578999999999999999999999 Q ss_pred EEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeec-------------------ccCce-EEEEEEEeCCcEE Q lcl|Aclame:pro 140 PYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIED-------------------IDGNK-IKRVEYYTENDIT 199 (479) Q Consensus 140 v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~-------------------~~~~~-~~~~~~y~~~~i~ 199 (479) +..|..+.+++..++..++++--|.. .++..++|.++..- .+.+. -..+++++. ++ T Consensus 141 ~~~d~~~~~rf~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~--V~ 216 (555) T protein:vir:10 141 VLPDFDAVVYHHSLTAGEYAIAADNQ--GRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHA--IE 216 (555) T ss_pred EecCCCceEEEEEeecceeEEeeCCC--CCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEE--Ee Confidence 88887777889999999988755543 35566565443321 01111 112332211 00 Q ss_pred EEEEcC--CccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 YFIERG--NSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTL 272 (479) Q Consensus 200 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~ 272 (479) . +... +.......+.....+....++... ...-+|..+|++.+. .+.+|+|-.++..+-+..+|...-.. T Consensus 217 p-r~~~~~~~~~~~~~p~~s~~~~~~~d~~~v--l~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~ 293 (555) T protein:vir:10 217 P-RADRDPSKRDDRNMAWKSVYFEPGADETRT--LRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRK 293 (555) T ss_pred e-ccCcCcCCCCccccceEEEEEEeccCCccc--cccCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHH Confidence 0 0000 000000000000000001111111 122245567776554 34689999999999999999988888 Q ss_pred HHHHHHhccceeeeecCCccchhhHHHHhhcccceecCC--CCc-ce-eeecCCCHHHHHHHHHHHHHHHHHHhCCC--- Q lcl|Aclame:pro 273 ADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDG--GGG-VD-KLEINIPVEAKKELLDRLEKNIIIFGQGV--- 345 (479) Q Consensus 273 ~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~l~~~i~~~s~~~--- 345 (479) ...++....|.+.+....... ......+++..... .++ .. ......+.....+.++.++..|...-... T Consensus 294 l~~~~~~~~pp~~v~~~~~~~----~~~~~pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~ 369 (555) T protein:vir:10 294 AQAIDYKSNPPLQLPVSAKNQ----DISTVPGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASFYADLFL 369 (555) T ss_pred HHHHHHHhcCceeeccccccc----cceeccccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHhhcchhh Confidence 888888888877654322111 12223333322221 222 12 22333456667777888888775544322 Q ss_pred CCcccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCc-----cccceeeEEeCCCCCCCHH Q lcl|Aclame:pro 346 NPESQNTGDKSGVALKFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNKS-----YDYKTVQITFNHSMIINEA 419 (479) Q Consensus 346 ~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~~-----~~~~~i~i~f~~~~p~d~~ 419 (479) .+...+....||+.+............- ..+...+.+.-+++-.+.++...+..+ .....++|.+..++-+... T Consensus 370 ~l~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~ 449 (555) T protein:vir:10 370 MLANGTNPQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQR 449 (555) T ss_pred hccCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHH Confidence 1333344457888887654444433322 122222233323333333333333221 1223566777666554211 Q ss_pred -H-------HHHHHHHHhcc-------CChHHHHH----hCCCCC---CHHHHHHHHHHHHHHHHhhhhcc------C-- Q lcl|Aclame:pro 420 -E-------KIDMAAKSTGI-------VSDETIVS----NHPWVE---DVNDELERLKKQEDTQKEYDDLI------P-- 469 (479) Q Consensus 420 -e-------~a~~~~k~~g~-------is~et~~~----~l~~~~---d~~~El~~i~~E~~~~~~~~~~~------~-- 469 (479) + .++.+..++++ +....++. .+|.-. -.++|++++.+++++++..+... . T Consensus 450 ~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~ 529 (555) T protein:vir:10 450 AIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADT 529 (555) T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1 11122222332 22223332 233211 13467776666544322211111 0 Q ss_pred CCCCCCcCCC Q lcl|Aclame:pro 470 NNQDGVIDET 479 (479) Q Consensus 470 ~~~~~~~det 479 (479) ...-+..+-| T Consensus 530 ~~~~~~~~~~ 539 (555) T protein:vir:10 530 AAKLGSVDTS 539 (555) T ss_pred HHHhcccccC Confidence 1111233333 No 125 >protein:vir:8883 Length: 543 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813772;genbank:gi:29366727;genbank:GeneID:1258836 Probab=99.01 E-value=5.9e-09 Score=65.69 Aligned_cols=443 Identities=9% Similarity=0.052 Sum_probs=199.5 Q ss_pred CCCcccCcHHHHHHHHhccChHH-HHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeec Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTIN-LVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAIN 79 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~ 79 (479) |++. . ....+.. +.+..+. +..+|.......+++|+-- .|+.-. .+ .... .....++.- T Consensus 1 ~~~~------~-----~~~~~~~~~~~r~~~-l~~~R~~~e~~w~e~~~y~--lP~~~~---~~-~~~~--~~~~~~~~d 60 (543) T protein:vir:88 1 MAET------K-----REGLAEEGAKAVYER-LKNDRVPYETRAENCAKVT--IPSLFP---KD-SDNS--STDYTTPWQ 60 (543) T ss_pred Cccc------c-----cCcchHHHHHHHHHH-HHHHHhHHHHHHHHHHHHh--ccccCC---CC-CCcc--ccccccccc Confidence 3321 1 2222222 3333333 3444444444444444321 111100 00 0000 011123445 Q ss_pred chHHHHHHHHHhhhhcc--Ce----eecCCch-------------hHHHHH--------HHHHhcCHHHHHHHHHHHHHh Q lcl|Aclame:pro 80 NYHKLLVDQKVGYSVGN--PI----VFNADDD-------------NLTKLL--------NDLLGEEFDDTITELYLNASN 132 (479) Q Consensus 80 n~~~~iv~~~a~~l~g~--~~----~~~~~~~-------------~~~~~~--------~~~~~n~~~~~~~~~~~~~~~ 132 (479) +-+...++.+|+.|++- |. ++...+. .++..+ ..+..++|.....++.++... T Consensus 61 st~~~a~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~ 140 (543) T protein:vir:88 61 AVGARGLNNLSAKVMLALFPLQSWMKLKVSEWQAKQLVSDPSQLAVVEQGLGMVERILMSYMEANSYRVTLFELIRQLAL 140 (543) T ss_pred chHHHHHHHHHHHHHHhhcCCCcccccccChHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh Confidence 66667777777776543 22 2222211 122222 223457899999999999999 Q ss_pred CCeEEEEEEeCCCCceE---EEEEccceeEEEEcCCCCCceEEEEEEEeeec--------------ccCceEEEEEEEeC Q lcl|Aclame:pro 133 KGVEWLHPYINRKGEFK---YVIIPAEEAIPIWDSKRQRELVAFIRFYYIED--------------IDGNKIKRVEYYTE 195 (479) Q Consensus 133 ~G~~~~~v~~d~~~~~~---i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~--------------~~~~~~~~~~~y~~ 195 (479) +|.+++++..+....++ ++.++-.+ +.+-.+. ..++...+|.++..- .+.+....+++|+. T Consensus 141 ~G~a~ly~~~~~~~~~~~~~~~~~pl~~-y~v~~d~-~G~v~~i~r~~~~~~~~l~~~~~~~v~~~~~~~p~~~~~v~~~ 218 (543) T protein:vir:88 141 AGTALIYLPPPDASSNSYNPMKLYTLHN-HVVQRDA-FGNVLQIVTLDKVAYAALPEDVRNSLSGGQEYKPEQELEVYTH 218 (543) T ss_pred hCceeeeeccCccccceecceEEeEcce-EEEeeCC-CCCeeeeeeeeeccHHHHhHHhhHHHHHHhhcCCccceEEEEE Confidence 99998877665433222 34444344 4444333 345666666655421 11222234444432 Q ss_pred CcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 196 NDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNIS 270 (479) Q Consensus 196 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s 270 (479) ++ -+.+++.+.. ......-.........++..+|++.+. ++.+|+|-.++..+-+..+|...- T Consensus 219 --V~-pr~~~~~~~~---------~~~~~~~~v~~~~~~~~~~e~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~ 286 (543) T protein:vir:88 219 --IY-IDDESGDFLS---------YQEIEGVEVDGSDGQYPQDALPWIAVRWTKRDGEHYGRSHVEEYLGDLNSLESLNE 286 (543) T ss_pred --EE-eecCCCcccc---------cccccCeeeecCCCccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHH Confidence 11 1111111111 011111111122333456678877654 356899999999999999999999 Q ss_pred HHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeeec--CCCHHHHHHHHHHHHHHHHHHhCCCCCc Q lcl|Aclame:pro 271 TLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEI--NIPVEAKKELLDRLEKNIIIFGQGVNPE 348 (479) Q Consensus 271 ~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~s~~~~~~ 348 (479) ......+....|.+.+.-.+........ ... .+.+.....+++..+.. ..+.......++.++..|...-....+. T Consensus 287 ~~l~~~~~~~~pp~~v~~~g~~~~~~~~-~~~-~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~ 364 (543) T protein:vir:88 287 AMIKFAMISSKVVGLVNPNGITQVRRLV-KAQ-TGDFVAGRKADIEFLQLEKTADFTVAKSVADAIEARLSYVFMLNSAV 364 (543) T ss_pred HHHHHHHHHhcCceeeccccccchhhcc-cCC-CceeecCCCCcceeeecccccchhHHHHHHHHHHHHHHHHHhhhhhc Confidence 9999999999998776432222222211 111 12233344456665543 3466677778888777776533322222 Q ss_pred ccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceeeEEeCCCCC-CCHHHHHHHH Q lcl|Aclame:pro 349 SQNTGDKSGVALKFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNK-SYDYKTVQITFNHSMI-INEAEKIDMA 425 (479) Q Consensus 349 ~~~~g~~Sg~Ai~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~~i~i~f~~~~p-~d~~e~a~~~ 425 (479) .-+....||+.+..+.........- ..+.-.+.+.-+++-.+.++...+.. ..+...+++.+.-++. -...+.++.+ T Consensus 365 ~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l 444 (543) T protein:vir:88 365 QRSGERVTAEEIRYVASELEDTLGGVYSILSQELQLPIVRVLLNQLQATQQIPNLPQEAVEPTVTTGAEALGRGQDLDKL 444 (543) T ss_pred cCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhceeeeEEecHHHHHHHHHHHHH Confidence 2233446888877644433333321 11111222222222223333333332 2233345566543222 1122222222 Q ss_pred HHH---hccC---------ChHHHHHh----CCC-CC---CHHHHHHHHHHHHHHHHhhhhccCCCCCC-CcCCC Q lcl|Aclame:pro 426 AKS---TGIV---------SDETIVSN----HPW-VE---DVNDELERLKKQEDTQKEYDDLIPNNQDG-VIDET 479 (479) Q Consensus 426 ~k~---~g~i---------s~et~~~~----l~~-~~---d~~~El~~i~~E~~~~~~~~~~~~~~~~~-~~det 479 (479) ... .+.+ ....++.. +|. .. -.++|++++.++++++............+ .++.+ T Consensus 445 ~~~~~~v~~~~~p~vld~id~d~~~~~~a~~~Gv~~~~i~r~~~e~~~~~~q~~~q~~~~~~~~~~~~~~~~~~~ 519 (543) T protein:vir:88 445 TQFLNAVATVSQLNGDPDLNVNNIKLRLANAIGIDTAGLLLTEAEKAQAQSQEMLKQGGLNAAAGIGSGVAAQAT 519 (543) T ss_pred HHHHHHHHhccchhhhccCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc Confidence 221 1222 22333332 232 11 13567777766654433322222211111 11222 No 126 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=98.96 E-value=9.2e-09 Score=64.64 Aligned_cols=440 Identities=10% Similarity=0.053 Sum_probs=204.6 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHH---HHHHHHHHhccCCcccccccccccccccccccccCcceeecchHH Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPE---KYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHK 83 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~ 83 (479) |..+.. .........+..+. +..+|.. +.+.+.+|..-. .... +. ........++.-+-+. T Consensus 1 m~~~~~----~~~~~~~~~~r~~~-l~~~R~~~e~~w~e~~~~~lP~---~~~~-----~~---~~~~~~~~~~~dst~~ 64 (535) T protein:vir:33 1 MADSKR----TGLGEDGAKATYDR-LTNDRRAYETRAENCAQYTIPS---LFPK-----ES---DNESTDYTTPWQAVGA 64 (535) T ss_pred CChhhh----hccChhHHHHHHHH-HHHHhhHHHHHHHHHHHHhccc---ccCC-----CC---CcccccccccccccHH Confidence 333331 12233333344443 3333433 344444443321 1000 00 0000111233445566 Q ss_pred HHHHHHHhhhhcc--Ce----eecCCch-------------hHHHHH--------HHHHhcCHHHHHHHHHHHHHhCCeE Q lcl|Aclame:pro 84 LLVDQKVGYSVGN--PI----VFNADDD-------------NLTKLL--------NDLLGEEFDDTITELYLNASNKGVE 136 (479) Q Consensus 84 ~iv~~~a~~l~g~--~~----~~~~~~~-------------~~~~~~--------~~~~~n~~~~~~~~~~~~~~~~G~~ 136 (479) ..++.+|+.|++- |. ++...+. +.+..+ ..+..++|.....++.++..++|.+ T Consensus 65 ~a~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a 144 (535) T protein:vir:33 65 RGLNNLASKLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNA 144 (535) T ss_pred HHHHHHHHHHHHhhcCCCcccccccChHHHhccccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCce Confidence 6777777766543 21 2222221 122222 2244578999999999999999999 Q ss_pred EEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeeccc-----C----------ceEEEEEEEeCCcEEEE Q lcl|Aclame:pro 137 WLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDID-----G----------NKIKRVEYYTENDITYF 201 (479) Q Consensus 137 ~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~-----~----------~~~~~~~~y~~~~i~~~ 201 (479) ++++..+..+.++++.++-.++++.-|. ..++...+|.++..-.+ + +....+++|+. + +. T Consensus 145 ~l~~~~~~~~~~~f~~~pl~~~~v~~d~--~G~vd~i~r~~~~t~~ql~~~~~~~~~~~~~~k~~~~~~~v~~~--v-~~ 219 (535) T protein:vir:33 145 LLYLPEPEGSYNPMKLYRLSSYVVQRDA--YGNVLQIVTRDQIAFGALPEDVRSAVEKSGGEKKMDEMVDVYTH--V-YL 219 (535) T ss_pred eEEeecCCCCceeeEEEEcCeeEEeeCC--CCCeeEEEeeEeecHHHHHHHhhhhhcccccccccccCCeEEEE--E-Ee Confidence 9998877767788888877776655443 34555566655543100 0 00011122210 0 00 Q ss_pred EEcCCccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 202 IERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNL 276 (479) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~ 276 (479) ..+++.+... ...............+|..+|++.+. ++.+|+|-.++..+-+..+|...-...... T Consensus 220 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~ 290 (535) T protein:vir:33 220 DEESGDYLKY---------EEVEDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMS 290 (535) T ss_pred eCCCCcEEEE---------EEEeCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHH Confidence 1111111110 00111111112223356777877654 356899999999999999999999999999 Q ss_pred HHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeeec--CCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc Q lcl|Aclame:pro 277 DEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEI--NIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD 354 (479) Q Consensus 277 ~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~ 354 (479) +....|.+.+.-.+........ ... .+.+.....++++.+.. ..+.......++.++..|...-....+..-+... T Consensus 291 ~~~~~p~~lv~~~g~~~~~~~~-~~~-~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~~~~~~~~~r 368 (535) T protein:vir:33 291 MISAKVIGLVNPAGITQPRRLT-KAQ-TGDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFMLNSAVQRTGER 368 (535) T ss_pred HHHhcCceeeccccccchhhcc-cCC-ceeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhcccCCCcc Confidence 9999998765422222211111 111 12233344455666543 3456667777777777775543322222223345 Q ss_pred ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceeeEEeCCCCCCC-HHHHHHHH----HH Q lcl|Aclame:pro 355 KSGVALKFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNK-SYDYKTVQITFNHSMIIN-EAEKIDMA----AK 427 (479) Q Consensus 355 ~Sg~Ai~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~~i~i~f~~~~p~d-~~e~a~~~----~k 427 (479) .||+.+..+.........- ..+.-.+.+.-+++-++.++...+.. ..+...+++.|.-++..- ..+.++.+ .. T Consensus 369 ~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~yis~La~aqr~~~~~~l~~~~~~ 448 (535) T protein:vir:33 369 VTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCISA 448 (535) T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEecHHHHHHHHHHHHHHHHHHHH Confidence 6888877644443333321 11222222233333333334333332 233445777876665532 11122222 22 Q ss_pred Hhcc--------CChHHHHHh----CCCCC-----CHHHHHHHHHHHHHHHHhhhhccCC-------CCCCCcCCC Q lcl|Aclame:pro 428 STGI--------VSDETIVSN----HPWVE-----DVNDELERLKKQEDTQKEYDDLIPN-------NQDGVIDET 479 (479) Q Consensus 428 ~~g~--------is~et~~~~----l~~~~-----d~~~El~~i~~E~~~~~~~~~~~~~-------~~~~~~det 479 (479) ++++ +....++.. +| ++ -.++|++++.++++++....+.+.. ......+.- T Consensus 449 la~~~P~~~d~~id~d~~~~~~a~~~G-vp~~~i~~~~ee~~~~~~q~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 523 (535) T protein:vir:33 449 WAALAPMQGDPDINLAVIKLRIANAIG-IDTSGILLTDEQKQALMMQDAAQTGVENAAAAGGAGVGALATSSPEAM 523 (535) T ss_pred HHhhChhhhhccCCHHHHHHHHHHHcC-CCHhHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhcCChhH Confidence 2221 222233322 23 22 1356666665555433322222211 111111111 No 127 >protein:vir:95315 Length: 559 # NCBI annotation: putative head-to-tail-joining protein # Family: family:all:481 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512261;genbank:gi:89152428;genbank:GeneID:3952984 Probab=98.93 E-value=1.3e-08 Score=63.90 Aligned_cols=448 Identities=8% Similarity=0.005 Sum_probs=206.3 Q ss_pred HhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhc Q lcl|Aclame:pro 16 LKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVG 95 (479) Q Consensus 16 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g 95 (479) -...+...+.+..+. ..++|..+....+++|+ +-+|++-.+.. .......+.+.++..+-+...++.+|+.|++ T Consensus 1 m~~~~~~~l~~r~~~-l~~~R~~~e~~w~e~~~--~~lP~~~~~~~---~~~~~~~~~~~~~~dst~~~a~~~Las~l~~ 74 (559) T protein:vir:95 1 MAETTKERLNKQFAQ-LESERQSFEPHWRELSD--YINPRGSRFLT---SEVNRNDRRNTRIIDSTGTMAARTLASGMMS 74 (559) T ss_pred CChhhHHHHHHHHHH-HHHHhhHHHHHHHHHHH--HhccccCCcCC---CCCCcccccccccccchHHHHHHHHHHHHHH Confidence 111223344444443 34445444444444444 22222211100 0111112234456667778888888877754 Q ss_pred c--C-----eeecCCc------hhHHHHH--------HHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 96 N--P-----IVFNADD------DNLTKLL--------NDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIP 154 (479) Q Consensus 96 ~--~-----~~~~~~~------~~~~~~~--------~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~ 154 (479) - | +++...+ .++.+.+ ..+..++|.....++.++..++|.+++++..+..+.+++..++ T Consensus 75 ~ltpp~~~WF~l~~~d~~~~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~Gta~l~~~~d~~~~~r~~~~~ 154 (559) T protein:vir:95 75 GITSPARPWFRLATPDPEMMDYGPVKLWLEAVQNRMNDMFNKSNLYQSLPQLYGSLGTYSTGAMAVLDDDEDIIRTMPFP 154 (559) T ss_pred hhcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeEeecCCCceeEEEEee Confidence 3 1 2233222 2232222 2344578999999999999999999998877766778899999 Q ss_pred cceeEEEEcCCCCCceEEEEEEEeeecc-------------------cCce-EEEEEEEeCCcEEE-EEEcCCccccccc Q lcl|Aclame:pro 155 AEEAIPIWDSKRQRELVAFIRFYYIEDI-------------------DGNK-IKRVEYYTENDITY-FIERGNSFIQEFL 213 (479) Q Consensus 155 p~~~~~~~d~~~~~~~~~~i~~~~~~~~-------------------~~~~-~~~~~~y~~~~i~~-~~~~~~~~~~~~~ 213 (479) ..++++.-|.. .++..++|.++..-. +.+. ...+++++. ++. .......+..... T Consensus 155 l~~~~v~~d~~--G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~--V~pr~~~~~~~~~~~~~ 230 (559) T protein:vir:95 155 IGSYYLANSPR--GSVDTCFRKFSMTVRQLVQEFGLNNVSESVKSMWESGTYEKWIEVMHS--VYPNIDRDTSKLDSKNK 230 (559) T ss_pred cCeEEEeeCCC--CCeEEEEEeEecCHHHHHHHcCcccCCHHHHHHHhcCCCCCeEEEEEE--Eeccccccccccccccc Confidence 99988766653 456555655443210 0111 112232210 000 0000000000000 Q ss_pred cccccccccccccccccccccccccccceEEec-----CCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccceeeee Q lcl|Aclame:pro 214 YDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSD-LTFYKSLIDIYDNNISTLADNLDEIQEVIYVLK 287 (479) Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~-~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~ 287 (479) ......+.....+... ..+.+|..+|++.+. ++.+|+|. ..+..+-+..+|...-......+....|.+.+. T Consensus 231 pf~s~~~e~~~~~~~~--l~esg~~e~P~~~~Rw~~~~ge~YGrg~P~~~al~d~k~L~~l~~~~l~~~~~~~~pp~~v~ 308 (559) T protein:vir:95 231 PFKSVYYEVGGDNDKL--LRESGFDEFPIMAPRWEVNGEDVYGSSCPGMLALGPVKALQLLQKRKSQLIDKATNPPMVAP 308 (559) T ss_pred eEEEEEEEecCCCcee--eecCCcccCCccceeeeecCCccccccchHHHhhHHHHHHHHHHHHHHHHHHHHhcCceecc Confidence 0000000000011111 112345556666543 34689995 889999999999999999999999999987765 Q ss_pred cCCccchhhHHHHhhcccceecCCC---Ccceeee-cCCCHHHHHHHHHHHHHHHHHHhCCCC---CcccccccccHHHH Q lcl|Aclame:pro 288 EYPGTSLQEFIDNIRYYKSIKVDGG---GGVDKLE-INIPVEAKKELLDRLEKNIIIFGQGVN---PESQNTGDKSGVAL 360 (479) Q Consensus 288 g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l~~~i~~~s~~~~---~~~~~~g~~Sg~Ai 360 (479) +.... ...+...+++...+.. ..++.+. .+.+...+...++.++..|...-.... +...+....||+.+ T Consensus 309 ~~~~~----~~~~l~pgg~~~~~~~~~~~~i~p~~~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~l~~r~~~rvTAtEV 384 (559) T protein:vir:95 309 TSLKN----QRASLLPGDITYIDQITGQDGFRPAYLVNPSTADLVADIQDTRQIINSAYFVDLFMMLQNINTRSMPVEAV 384 (559) T ss_pred ccccc----cceeeeccceeeeCCCCCcccceeecccccchHHHHHHHHHHHHHHHHHhhhhhHHHhhcCCCCCCCHHHH Confidence 43211 1122333444333322 2334332 234455556667777777655443322 12223455788888 Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCc-----cccceeeEEeCCCCCCCH-HHH-------HHHHH Q lcl|Aclame:pro 361 KFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNKS-----YDYKTVQITFNHSMIINE-AEK-------IDMAA 426 (479) Q Consensus 361 ~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~~-----~~~~~i~i~f~~~~p~d~-~e~-------a~~~~ 426 (479) ............- ..+.-.+.+.-+++-++.++...+..+ ....+++|.+..++.+-. .+. ++.+. T Consensus 385 ~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l~~~~i~v~~is~La~aqk~~~~~~i~~~~~~~~ 464 (559) T protein:vir:95 385 IEMKEEKLLMLGPVLERLNDECLNPLIDRSFSMMVRKNMLPPPPDVMEGMPLKVEYISVMAQAQKSIGLSSLASTVNFIG 464 (559) T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCcceEEEeecHHHHHHHHHHHHHHHHHHHHHH Confidence 7654444444322 222222233333333333333333211 123457777765554321 111 12222 Q ss_pred HHhcc-------CChHHHHHh----CCCCCC---HHHHHHHHHHHHHHHHhhhhcc-----CCCCCCCcCCC Q lcl|Aclame:pro 427 KSTGI-------VSDETIVSN----HPWVED---VNDELERLKKQEDTQKEYDDLI-----PNNQDGVIDET 479 (479) Q Consensus 427 k~~g~-------is~et~~~~----l~~~~d---~~~El~~i~~E~~~~~~~~~~~-----~~~~~~~~det 479 (479) .++++ +....++.. +|.-.+ .++|+++++++++++...++.. ..+.-+...++ T Consensus 465 ~laq~~Pevld~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~rqqr~~~qq~~q~~~~~~~aa~~~~~~~~~ 536 (559) T protein:vir:95 465 QLAQVKPEALDKLNVDQAIDAFADMSGVSPTVIVPQEQVEQARQQRAQQQQQQQMMAMGMAAAQGVKTLSEA 536 (559) T ss_pred HHhccChhhhhcCCHHHHHHHHHHHhCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc Confidence 22232 333333332 222111 2466666655544322211111 00000000111 No 128 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=98.91 E-value=1.6e-08 Score=63.35 Aligned_cols=441 Identities=9% Similarity=0.044 Sum_probs=191.6 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |+. ......+.++. +.+..+. +..+|.......+++|+- -+|+.-.. + . ........++.-+ T Consensus 1 ~~~------~~~~~~~~~~~---~~~r~~~-l~~~R~~~e~~w~e~~~y--~lP~~~~~---~-~--~~~~~~~~~~~ds 62 (535) T protein:vir:94 1 MAS------SQKREGFAENG---AKAVYDA-LKNDRNSYETRAENCAKY--TIPSLFPK---D-S--DNASTDYTTPWQA 62 (535) T ss_pred CCc------hhhhhhHHHHH---HHHHHHH-HHHHhhHHHHHHHHHHHH--hccccCCC---C-C--CccccccCCcccc Confidence 332 22222222222 2233332 223333333333333331 11111000 0 0 0011122334556 Q ss_pred hHHHHHHHHHhhhhcc--C----eeecCCch-------------hHHHHH--------HHHHhcCHHHHHHHHHHHHHhC Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGN--P----IVFNADDD-------------NLTKLL--------NDLLGEEFDDTITELYLNASNK 133 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~--~----~~~~~~~~-------------~~~~~~--------~~~~~n~~~~~~~~~~~~~~~~ 133 (479) -+...++.+|+.|++- | +++...+. +.++.+ ..+..++|.....++.++...+ T Consensus 63 t~~~a~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~ 142 (535) T protein:vir:94 63 VGARGLNNLASKLMLALFPMQTWMKLTISEFEAKQLVAQPAELAKVEEGLSMVERILMNYIESNSYRVTLFETLKQLVVA 142 (535) T ss_pred cHHHHHHHHHHHHHhhhcCCCCccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh Confidence 6677777777766542 2 12222211 122222 2244588999999999999999 Q ss_pred CeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeec--------------ccCceEEEEEEEeCCcEE Q lcl|Aclame:pro 134 GVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIED--------------IDGNKIKRVEYYTENDIT 199 (479) Q Consensus 134 G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~--------------~~~~~~~~~~~y~~~~i~ 199 (479) |.+++++..+++...+++.++-.++++--|. ..++...+|.++..- .+.+....+++|+. + T Consensus 143 G~a~l~~~~~~~~~~~f~~~pl~~y~v~~d~--~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~--v- 217 (535) T protein:vir:94 143 GNALLYIPEPEGTYNPMKLYRLSSYVVQRDA--FGTVLQIVTLDKTAYAALPEDVRNSMDSSQEHKGDEMIDVYTH--I- 217 (535) T ss_pred CcEeEeeccCcCcccceEEEEcCeEEEeeCC--CCCeEEEEeeeeccHHHhhHHHHHHHHhccccCCCceeEEEEE--E- Confidence 9998888766544456777766665543333 345656666555421 01112223444431 0 Q ss_pred EEEEcC-CccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 YFIERG-NSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLA 273 (479) Q Consensus 200 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~ 273 (479) |.... ..+.. .....+..........+|..+|++.+. ++.+|+|-.++..+-+..+|.+.-... T Consensus 218 -~~~~~~~~~~~---------~~e~~g~~~~~~~~~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l 287 (535) T protein:vir:94 218 -YLDEESGEYLK---------YEEIDGVEVEGTDASYPVDACPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIV 287 (535) T ss_pred -EeeCCCCcEEE---------EEEecCeeeccccccCccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHH Confidence 11111 11110 000111111112234577788887664 346899999999999999998877777 Q ss_pred HHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeeec--CCCHHHHHHHHHHHHHHHHHHhCCCCCcccc Q lcl|Aclame:pro 274 DNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEI--NIPVEAKKELLDRLEKNIIIFGQGVNPESQN 351 (479) Q Consensus 274 ~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~ 351 (479) ........|.+.+.-.+....... .... .+.+.....+++.++.. ..+.......++.++..|...-....+...+ T Consensus 288 ~~~~~a~~~~~lv~p~g~~~~~~~-~~~~-~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~~~d 365 (535) T protein:vir:94 288 KMSMISAKVIGLVNPAGITQVRRL-TKAQ-TGDFVSGRPEDISFLQLEKAADFSVARAVSEQIEGRLSYAFMLNSAVQRT 365 (535) T ss_pred HHHHHhccCCcccccccccchhhc-ccCC-CceeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhHhhhccCC Confidence 777777777655432111111111 1111 12233334455555533 3455666777777777775543322222223 Q ss_pred cccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCc-cccceeeEEeCCCCCCCHHHHHHHH---- Q lcl|Aclame:pro 352 TGDKSGVALKFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNKS-YDYKTVQITFNHSMIINEAEKIDMA---- 425 (479) Q Consensus 352 ~g~~Sg~Ai~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~~-~~~~~i~i~f~~~~p~d~~e~a~~~---- 425 (479) ....||+.++...........- ..+.-.+.+.-+++-.+.++...+..+ .+..-+++.+.-++. .+...+.+ T Consensus 366 ~~rvTAtEV~~r~~E~~~~LGpv~~rl~~ElL~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~la--~l~r~~~~~~l~ 443 (535) T protein:vir:94 366 GERVTAEEIRYVASELEDTLGGVYSILSQELQLPMVRVLLKQLQATNQIPELPKEAVEPTISTGME--ALGRGQDLDKLE 443 (535) T ss_pred CCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEeehHH--HHHHHHHHHHHH Confidence 3446888877644433333221 111111222222232233333333321 222234555533332 22222211 Q ss_pred ---HHHhcc--------CChHHHHHh----CCCCC-----CHHHHHHHHHHHHHHHHhhh---hccCCCCCC--CcCCC Q lcl|Aclame:pro 426 ---AKSTGI--------VSDETIVSN----HPWVE-----DVNDELERLKKQEDTQKEYD---DLIPNNQDG--VIDET 479 (479) Q Consensus 426 ---~k~~g~--------is~et~~~~----l~~~~-----d~~~El~~i~~E~~~~~~~~---~~~~~~~~~--~~det 479 (479) ..++++ +....++.. +| ++ -.++|++++.++++++...+ ........+ ..+-+ T Consensus 444 ~~~~~laq~~P~~ld~~id~d~~~~~~a~~~G-vp~~~i~rs~eev~~~~~q~~~~~~~~~~~~~~g~~~~~~~~~~~~ 521 (535) T protein:vir:94 444 RCIAAWSALAPMQGDPDINIATIKLRIANAIG-IDTSGILKTPEEKQQEMAEAAQGTAMQNAAASAGAGAGTMATASPE 521 (535) T ss_pred HHHHHHHhhChHHhhhcCCHHHHHHHHHHHhC-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccChH Confidence 112222 222233322 22 21 13456665555443322211 111111111 00001 No 129 >protein:vir:7321 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848212;genbank:gi:30387383;genbank:GeneID:2641872 Probab=98.88 E-value=2e-08 Score=62.79 Aligned_cols=444 Identities=9% Similarity=0.022 Sum_probs=207.6 Q ss_pred HhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhc Q lcl|Aclame:pro 16 LKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVG 95 (479) Q Consensus 16 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g 95 (479) -...+...|.+..+. ...+|.......+++|+ +-+|++-.+. . .......+.+.++..+-+...++.+++.|++ T Consensus 1 m~~~~~~~l~~r~~~-l~~~R~~~e~~w~e~~~--~~lP~~~~~~-~--~~~~~~~~~~~~~~dst~~~a~~~Las~l~~ 74 (556) T protein:vir:73 1 MAETEKERLLKQLAQ-LKNERTSFESHWLDLSD--FINPRGSRFL-T--SDVNRDDRRNTKIVDPTGSMAQRILSSGMMS 74 (556) T ss_pred CChhhHHHHHHHHHH-HHHHhhHHHHHHHHHHH--HhccccCCcC-C--CCCCcchhhcCccccchHHHHHHHHHHHHHH Confidence 111223345555543 33344443444444444 1122211110 0 0111112233456667777888888877754 Q ss_pred c--C-----eeecCCc------hhHHHHH--------HHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 96 N--P-----IVFNADD------DNLTKLL--------NDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIP 154 (479) Q Consensus 96 ~--~-----~~~~~~~------~~~~~~~--------~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~ 154 (479) - | +++...+ ..+.+.+ ..+..++|.....++.++...+|.+.+++..+..+.+++..++ T Consensus 75 ~ltpp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~r~~~~~ 154 (556) T protein:vir:73 75 GITSPARPWFKLATPDPDMMDYGPVKIWLEVVQRRMNEVFNKSNLYQSLPVMYASLGTFGTGAMAVMEDDQDVIRTMPFP 154 (556) T ss_pred hhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeeecCCceEEEEEee Confidence 3 1 2333222 2222222 2244578999999999999999999999888877778899999 Q ss_pred cceeEEEEcCCCCCceEEEEEEEeeec-------------------ccCce-EEEEEEEeCCcEEEEEEcC-----Cccc Q lcl|Aclame:pro 155 AEEAIPIWDSKRQRELVAFIRFYYIED-------------------IDGNK-IKRVEYYTENDITYFIERG-----NSFI 209 (479) Q Consensus 155 p~~~~~~~d~~~~~~~~~~i~~~~~~~-------------------~~~~~-~~~~~~y~~~~i~~~~~~~-----~~~~ 209 (479) ..+++.--|.. .++..++|.++..- .+.+. ...+++++ .+... .+.. T Consensus 155 l~~~~~~~d~~--G~vd~i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~~v~~------~V~pr~~~~~~~~~ 226 (556) T protein:vir:73 155 IGSYYLANSPR--GSVDTCIRQFSMTVRQMVQEFGLDNVSTSVKGMWENGTYETWVEVNH------CITPNVNRDSGKMD 226 (556) T ss_pred cceeEEeeCCC--CCeEEEEEEEeccHHHHHHHcCcccCCHHHHHHHhcCCccceEEEEE------EEeccccccccccC Confidence 99988755543 45555666544321 01111 11222221 11100 0000 Q ss_pred cccccccccccccccccccccccccccccccceEEec-----CCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 210 QEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSD-LTFYKSLIDIYDNNISTLADNLDEIQEVI 283 (479) Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~-~~~v~~lid~~~~~~s~~~~~~~~~~~p~ 283 (479) ....+.....+.....+.... .+-+|..+|++.+. ++.+|+|. .++..+-+..+|...-......+....|. T Consensus 227 ~~~~p~~s~~~~~~~~~~~vl--~esg~~e~P~~~~Rw~~~~ge~YGrg~P~~~~lgD~k~L~~l~~~~l~~~~~~~~pp 304 (556) T protein:vir:73 227 SKNKPYRSVYFESGGDSDKLL--RESGFDEFPILAPRWEVNGEDVYASSCPGMLALGQVKALQVEQKRKAQLIDKATNPP 304 (556) T ss_pred cccceEEEEEEEecCCCceec--ccCCcccCCceeeeeeecCCcccccCccHHHhHHHHHHHHHHHHHHHHHHHHHhcCc Confidence 000000000011001111111 12245566776553 35689995 99999999999999999999999999998 Q ss_pred eeeecCCccchhhHHHHhhcccceecC---CCCcceeee-cCCCHHHHHHHHHHHHHHHHHHhCCCC---Cccccccccc Q lcl|Aclame:pro 284 YVLKEYPGTSLQEFIDNIRYYKSIKVD---GGGGVDKLE-INIPVEAKKELLDRLEKNIIIFGQGVN---PESQNTGDKS 356 (479) Q Consensus 284 l~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~~s~~~~---~~~~~~g~~S 356 (479) +.+...... ...+...++++... +..+++.+. ...+.....+.++.++..|...-.... +...+....| T Consensus 305 ~~v~~~~~~----~~~~~~pgg~~~~~~~~~~~~i~p~~~~~~d~~~~~~~i~~~~~rI~~af~~d~~~~l~~~~~~r~T 380 (556) T protein:vir:73 305 MVAPTSLKN----QRVSLLPGDVTYLDVISGQDGFKPAYLVNPNTADLLADIQDTRQTINSAYFVDLFMMLQNINTRSMP 380 (556) T ss_pred eeccccccc----cceeeccCccccccCCCCccceeeeccccccHHHHHHHHHHHHHHHHHHhhcchhhhhccCCCCCcc Confidence 776543211 11223333333222 223455543 234456666677777777754433221 2223344578 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCc-----cccceeeEEeCCCCCCCHH-HHH------- Q lcl|Aclame:pro 357 GVALKFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNKS-----YDYKTVQITFNHSMIINEA-EKI------- 422 (479) Q Consensus 357 g~Ai~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~~-----~~~~~i~i~f~~~~p~d~~-e~a------- 422 (479) |+.+......+.....- ..+.-.+.+.-+++-++.++...+..+ ....+++|.+..++-+... ..+ T Consensus 381 AtEv~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aqk~~~~~~i~~~~ 460 (556) T protein:vir:73 381 VEAVIEMKEEKLLMLGPVLERLNDEALNPLIDRVFSIMARKNMLPEPPDVLQGMPLRIEYISVMAQAQKSIGLTSLSQTV 460 (556) T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeecHHHHHHHHHHHHHHHHHH Confidence 88877654444444322 222222333333333333333333211 1233577777665543211 111 Q ss_pred HHHHHHhcc-------CChHHHHHh----CCCCC---CHHHHHHHHHHHHHHHHhhhhcc----------CCCCCCC-cC Q lcl|Aclame:pro 423 DMAAKSTGI-------VSDETIVSN----HPWVE---DVNDELERLKKQEDTQKEYDDLI----------PNNQDGV-ID 477 (479) Q Consensus 423 ~~~~k~~g~-------is~et~~~~----l~~~~---d~~~El~~i~~E~~~~~~~~~~~----------~~~~~~~-~d 477 (479) +.+..++++ +....++.. +|.-. -.++|++.+.+++++++..++.+ ....+-. .+ T Consensus 461 ~~~~~laq~~Pe~~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~rq~r~~~qq~~~~~~~~~~a~~~~~~~~~~~~~~ 540 (556) T protein:vir:73 461 GFIGQLAQFKPEALDKLDVDQAIDAFSEMSGVSPTVIVPQEQVQGIREERAKQAQAAQAMAMGQAAAQGAKTLSETQTSD 540 (556) T ss_pred HHHHHHhccChhhHhcCCHHHHHHHHHHHcCCChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC Confidence 122222222 223333332 22211 13466666655543322222111 0011000 11 Q ss_pred CC Q lcl|Aclame:pro 478 ET 479 (479) Q Consensus 478 et 479 (479) .. T Consensus 541 ~~ 542 (556) T protein:vir:73 541 PS 542 (556) T ss_pred HH Confidence 11 No 130 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=98.85 E-value=2.7e-08 Score=62.07 Aligned_cols=440 Identities=10% Similarity=0.053 Sum_probs=195.3 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHH---HHHHHHHHhccCCcccccccccccccccccccccCccee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPE---KYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA 77 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri 77 (479) |++ +. -......+.+..+.+. .+|.. +.+.+.+|..- +.-.. +. ........++ T Consensus 1 m~~------~~-----~~~~~~~~~~r~~~l~-~~R~~~e~~w~e~~~~~lP-----~~~~~---~~---~~~~~~~~~~ 57 (536) T protein:vir:10 1 MAE------KR-----TGLAEDGAKSVYERLK-NDRAPYETRAQNCAQYTIP-----SLFPK---DS---DNASTDYQTP 57 (536) T ss_pred Ccc------hh-----hchhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcc-----cccCC---CC---Cccccccccc Confidence 332 11 1334555566665433 33433 34444444332 11100 00 0111122345 Q ss_pred ecchHHHHHHHHHhhhhcc--C----eeecCCch-------------hHHH--------HHHHHHhcCHHHHHHHHHHHH Q lcl|Aclame:pro 78 INNYHKLLVDQKVGYSVGN--P----IVFNADDD-------------NLTK--------LLNDLLGEEFDDTITELYLNA 130 (479) Q Consensus 78 ~~n~~~~iv~~~a~~l~g~--~----~~~~~~~~-------------~~~~--------~~~~~~~n~~~~~~~~~~~~~ 130 (479) .-+.+...++.+|+.|++- | +++...+. +.+. +...+..++|.....++.++. T Consensus 58 ~dst~~~a~~~Laa~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L 137 (536) T protein:vir:10 58 WQAVGARGLNNLASKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQL 137 (536) T ss_pred ccccHHHHHHHHHHHHHhhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH Confidence 5566777777777766542 2 12222221 1111 122344578999999999999 Q ss_pred HhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeeccc---------------CceEEEEEEEe Q lcl|Aclame:pro 131 SNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDID---------------GNKIKRVEYYT 194 (479) Q Consensus 131 ~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~y~ 194 (479) .++|.+.+++..+..+.+ .++.++-.++++.-|. ..++..++|.++..-.+ .+....+++|+ T Consensus 138 ~~~G~a~ly~~e~~~~~~~~~~~~pl~~~~v~~d~--~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~ 215 (536) T protein:vir:10 138 VVAGNVLLYLPEPEGSNYNPMKLYRLSSYVVQRDA--FGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYT 215 (536) T ss_pred HhHCcEeEEEeeCCCCceeeEEEEEcCeEEEeeCC--CCCeeEEeeeeeccHHHHHHhhhhhhcccccccCcccceEEEE Confidence 999999987765554434 4677776666655553 34566666655543100 11111223322 Q ss_pred CCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 195 ENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNI 269 (479) Q Consensus 195 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~ 269 (479) . + +.+.+...+.. ................+|..+|++.+. .+.+|+|-.++..+-+..+|... T Consensus 216 ~--V-~~~~~~~~~~~---------~~e~~g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~ 283 (536) T protein:vir:10 216 H--I-YLDEASGEYLR---------YEEVEGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQ 283 (536) T ss_pred E--E-EEecCCCcEEE---------EEeecCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHH Confidence 1 0 00111111111 011111111122334467778887664 34689999999999999999887 Q ss_pred HHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceee--ecCCCHHHHHHHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 270 STLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKL--EINIPVEAKKELLDRLEKNIIIFGQGVNP 347 (479) Q Consensus 270 s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~i~~~s~~~~~ 347 (479) -...........|.+.+.-.+....... .....+. +.....+++..+ ....+.......++.++..|........+ T Consensus 284 ~~~l~~~~~a~~~~~lv~p~g~~~~~~~-~~~~~g~-~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~l 361 (536) T protein:vir:10 284 EAIVKMSMISSKVIGLVNPAGITQPRRL-TKAQTGD-FVTGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLNSA 361 (536) T ss_pred HHHHHHHHHHhcCCcccCcccccchhhh-ccCCCcc-eecCCcccceeeeccccccchHHHHHHHHHHHHHHHHHhhhhc Confidence 7777766766665544421111111111 1112222 222233444433 33445566677777777777543332222 Q ss_pred cccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCc-cccceeeEEeCCCCCC-CHHHHHHH Q lcl|Aclame:pro 348 ESQNTGDKSGVALKFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNKS-YDYKTVQITFNHSMII-NEAEKIDM 424 (479) Q Consensus 348 ~~~~~g~~Sg~Ai~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~~-~~~~~i~i~f~~~~p~-d~~e~a~~ 424 (479) ..-+....||+.+..+.........- ..+.-.+.+.-+++-++.++...+..+ .+...+++.+.-++.. ...+.++. T Consensus 362 ~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~ 441 (536) T protein:vir:10 362 VQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDK 441 (536) T ss_pred ccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEEecHHHHHHHHHHHH Confidence 22233446888877654444443322 111122222223333333333333321 2222345555433331 11112221 Q ss_pred H----HHHhcc--------CChHHHHH----hCCCCC----CHHHHHHHHHHHHHHHHhhhhccCCCC-------C---- Q lcl|Aclame:pro 425 A----AKSTGI--------VSDETIVS----NHPWVE----DVNDELERLKKQEDTQKEYDDLIPNNQ-------D---- 473 (479) Q Consensus 425 ~----~k~~g~--------is~et~~~----~l~~~~----d~~~El~~i~~E~~~~~~~~~~~~~~~-------~---- 473 (479) + ..++++ +....++. .+|... -.++|++++.++++++....+.....- . T Consensus 442 l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~~~~~~~~~~~~~ 521 (536) T protein:vir:10 442 LERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALAQGMAAQATASPE 521 (536) T ss_pred HHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch Confidence 1 112222 22233333 234211 135677777665543322222111100 0 Q ss_pred --------CCcCCC Q lcl|Aclame:pro 474 --------GVIDET 479 (479) Q Consensus 474 --------~~~det 479 (479) ++.++. T Consensus 522 ~~~~~~~~~g~~~~ 535 (536) T protein:vir:10 522 AMAAAADSVGLQPG 535 (536) T ss_pred hHHhhhhccccCCC Confidence 000011 No 131 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=98.85 E-value=2.9e-08 Score=61.95 Aligned_cols=421 Identities=8% Similarity=0.062 Sum_probs=185.3 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhcc----- Q lcl|Aclame:pro 22 INLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGN----- 96 (479) Q Consensus 22 ~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~----- 96 (479) ..+.+..+. +.++|.......+++++- -+|++-.... ..........++.-+.+...++.+|+-|.+- T Consensus 1 m~~~~r~~~-L~~~R~~~e~~w~e~~~~--tlP~~~~~~~----~~~~~~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~ 73 (522) T protein:vir:10 1 MKARERYNQ-LTTARQMFLDKAVECSEL--TLPYLIDDDI----SSRPNHKSLTVPWQSVGAKCCVTLAAKLMLAVLPPQ 73 (522) T ss_pred CchHHHHHH-HHHHhhHHHHHHHHHHHH--hhhcccCCCC----CCCcccccccccccchHHHHHHHHHHHHHHhhcCCC Confidence 223444443 333343333333444331 1221111000 0001111223455566777777777776543 Q ss_pred -C-eeecCCchh------------HHHH--------HHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 97 -P-IVFNADDDN------------LTKL--------LNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIP 154 (479) Q Consensus 97 -~-~~~~~~~~~------------~~~~--------~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~ 154 (479) | +++...+.. +++. ...+..++|.....++.++...+|.+++++ ++++ +++++ T Consensus 74 ~~WF~l~~~d~~l~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~--~~~~---~~~~p 148 (522) T protein:vir:10 74 TSFFKLQVRDDKLGEELDPQIRSELDLSFSKMERMIMDYIAASNDRVAVHQALKHLIVGGNALIFM--GKDG---LKTFP 148 (522) T ss_pred CccccccCChHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCceeEEE--cCCC---ceEEE Confidence 2 223322211 1221 123446789999999999999999988654 5554 45555 Q ss_pred cceeEEEEcCCCCCceEEEEEEEeeec-----------------ccCceEEEEEEEeCCcEEEEEEcCCccccccccccc Q lcl|Aclame:pro 155 AEEAIPIWDSKRQRELVAFIRFYYIED-----------------IDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEY 217 (479) Q Consensus 155 p~~~~~~~d~~~~~~~~~~i~~~~~~~-----------------~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~ 217 (479) -.++++--| . ..++..++|.++..- ...+....+++|+. + +.+...+.+... T Consensus 149 l~~y~v~~d-~-~G~vd~i~r~~~~t~~ql~~~fg~~~~~~~~~~~~~~~~~v~v~~~--v-~p~~~~~~~~~~------ 217 (522) T protein:vir:10 149 LTRYVINRD-G-DGNVLEIVTKELISRKVLDIELPEPKPNTGIDESSTTNDDVTIYTY--V-KLDKSSGRWVWH------ 217 (522) T ss_pred cceEEEeeC-C-CCCeeEEEeeeeccHHHHHHhcchhccchhhhcccCCCCceEEEEE--E-EeeccCCceEEE------ Confidence 555444333 3 345555566555420 00111122333321 0 011111111100 Q ss_pred cccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcc Q lcl|Aclame:pro 218 GKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGT 292 (479) Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~ 292 (479) ....+.........-+|..+|++.+. ++.+|+|-.++..+-+..+|...-......+....|.+.+...+.. T Consensus 218 ---~~~~~~~~~~~~s~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~~~~~~~a~~p~~lv~~~~~~ 294 (522) T protein:vir:10 218 ---QEAFDKIIPDSRSTAPKNASPWLPLRFNTVDGEDYGRGRVEEFLGDLKSLDGLSQSLIEGAAAASKVVFLVSPSSTT 294 (522) T ss_pred ---EccCCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeecccccc Confidence 00111111111224477778887654 3468999999999999999999888888899999988776322222 Q ss_pred chhhHHHHhhcccceecCCCCcceeeecC--CCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 293 SLQEFIDNIRYYKSIKVDGGGGVDKLEIN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLK 370 (479) Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k 370 (479) ...... . .....+..+..+++..+... .+.......++.++..|....... ...+....||+.+..+.....+. T Consensus 295 ~~~~l~-~-~~~~~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~ri~~aFl~~--~~~d~~rvTAtEV~~r~~E~~~~ 370 (522) T protein:vir:10 295 KPATIA-K-AGNGAIVQGRPEDVAVIQVGKTADFSTAANMATAIEKRLLEAFLVM--NVRNAERVTAEEVRLTQLELEQQ 370 (522) T ss_pred cccccc-C-CCCcceecCCCccceeecccccccchHHHHHHHHHHHHHHHHHhhc--cCCCCCCCCHHHHHHHHHHHHHH Confidence 211111 1 11223333445556655432 455666777787777776543221 22234557888887654444333 Q ss_pred HHH----H-HHHHHHHHHHHHHHHHHHHHhcCCC---cccc-ceeeEEeCCCCCCCHHHHHHHHH----HHhccCChHH- Q lcl|Aclame:pro 371 CSK----T-EKKFKKAIRELLWFVCEYLKISGNK---SYDY-KTVQITFNHSMIINEAEKIDMAA----KSTGIVSDET- 436 (479) Q Consensus 371 ~~~----~-~~~~~~~l~~~~~li~~~~~~~~~~---~~~~-~~i~i~f~~~~p~d~~e~a~~~~----k~~g~is~et- 436 (479) ..- . ...+..-+.+++. ++...+.. +.+. ....|.+..++-+ ++.++.+. .++.++..+. T Consensus 371 LGpv~~rl~~E~l~Pli~r~~~----il~r~g~lP~~p~~~~~~~~v~~is~Lar--aq~~~~l~~~~~~i~~~~~p~~~ 444 (522) T protein:vir:10 371 LGGIFSLLVIEFLIPYLNRTLL----VLQRSNQIPKLPKDIVRPTIVAGVNALGR--GQDRESLTAFVGTIAQTLGPEAL 444 (522) T ss_pred hhHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCCCCccccccccccchhHHHH--HHHHHHHHHHHHHHHHhhCchhh Confidence 321 1 1222223333333 33333322 1111 1222334433333 22222221 1222222232 Q ss_pred --------HHH----hCCCCC-----CHHHHHHHHHHHHHHHHhhhhccC------CCC--------CCCcCCC Q lcl|Aclame:pro 437 --------IVS----NHPWVE-----DVNDELERLKKQEDTQKEYDDLIP------NNQ--------DGVIDET 479 (479) Q Consensus 437 --------~~~----~l~~~~-----d~~~El~~i~~E~~~~~~~~~~~~------~~~--------~~~~det 479 (479) +++ .+| ++ -.++|++.++++++++....+.+. ... ++....| T Consensus 445 ~~~id~d~~~~~~a~~~G-vp~~~ivrt~eev~~~~q~~q~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 517 (522) T protein:vir:10 445 MQYLNPLEAIKRLAAAQG-IDVLNLVKTEQQLAEEQQAAQQQAAQQSLVDQAGQMTGSPLMDPTKNPQLMDEEQ 517 (522) T ss_pred hhcCCHHHHHHHHHHHhC-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccHHHHHHhC Confidence 222 223 21 124555554444332211111110 000 0111111 No 132 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=98.82 E-value=3.5e-08 Score=61.43 Aligned_cols=440 Identities=10% Similarity=0.052 Sum_probs=195.7 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHH---HHHHHHHHhccCCcccccccccccccccccccccCccee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPE---KYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA 77 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri 77 (479) |++ +. -......+.+..+.+. .+|.. +.+.+.+|..- +.-.. +. ........++ T Consensus 1 m~~------~~-----~~~~~~~~~~r~~~lk-~~R~~~e~~w~e~~~~~lP-----~~~~~---~~---~~~~~~~~~~ 57 (536) T protein:vir:21 1 MAE------KR-----TGLAEDGAKSVYERLK-NDRAPYETRAQNCAQYTIP-----SLFPK---DS---DNASTDYQTP 57 (536) T ss_pred Ccc------hh-----hchhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcc-----cccCC---CC---Cccccccccc Confidence 332 11 1334555666665433 33433 33444444332 11100 00 0111122345 Q ss_pred ecchHHHHHHHHHhhhhcc--C----eeecCCch-------------hHHH--------HHHHHHhcCHHHHHHHHHHHH Q lcl|Aclame:pro 78 INNYHKLLVDQKVGYSVGN--P----IVFNADDD-------------NLTK--------LLNDLLGEEFDDTITELYLNA 130 (479) Q Consensus 78 ~~n~~~~iv~~~a~~l~g~--~----~~~~~~~~-------------~~~~--------~~~~~~~n~~~~~~~~~~~~~ 130 (479) .-+-+...++.+|+.|++- | +++...+. +.+. +...+..++|.....++.++. T Consensus 58 ~dst~~~a~~~Laa~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L 137 (536) T protein:vir:21 58 WQAVGARGLNNLASKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQL 137 (536) T ss_pred ccccHHHHHHHHHHHHHHhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH Confidence 5566777777777766542 2 12222221 1111 122344578999999999999 Q ss_pred HhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeeccc---------------CceEEEEEEEe Q lcl|Aclame:pro 131 SNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDID---------------GNKIKRVEYYT 194 (479) Q Consensus 131 ~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~y~ 194 (479) .++|.+.+++..+..+.+ .++.++-.++++.-|. ..++..++|.++....+ .+....+++|+ T Consensus 138 ~~~G~a~ly~~e~~~~~~~~f~~~pl~~~~v~~d~--~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~ 215 (536) T protein:vir:21 138 VVAGNVLLYLPEPEGSNYNPMKLYRLSSYVVQRDA--FGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYT 215 (536) T ss_pred HhHCcEeEEEeeCCCCceeeEEEEEcCeEEEeeCC--CCCeeEEeeeeeccHHHHHHhhhhhhcccccccccccceeEEE Confidence 999999987765554434 4677776666655553 34566666655543110 01111223322 Q ss_pred CCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecC-----CCCCCchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 195 ENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN-----NEKCVSDLTFYKSLIDIYDNNI 269 (479) Q Consensus 195 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~s~~~~v~~lid~~~~~~ 269 (479) . + +.+.++..+.. ................+|..+|++.+.- +.+|+|-.++..+-+..+|... T Consensus 216 ~--v-~~~~~~~~~~~---------~~e~~g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~ 283 (536) T protein:vir:21 216 H--I-YLDEDSGEYLR---------YEEVEGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQ 283 (536) T ss_pred E--E-EEecCCCcEEE---------EeccCCeeeccccCccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHH Confidence 1 0 01111111110 1111111111233344677888886643 4689999999999999999887 Q ss_pred HHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceee--ecCCCHHHHHHHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 270 STLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKL--EINIPVEAKKELLDRLEKNIIIFGQGVNP 347 (479) Q Consensus 270 s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~i~~~s~~~~~ 347 (479) -...........|.+.+.-.+....... .....+. +.....+++..+ ....+.......++.++..|........+ T Consensus 284 ~~~l~~~~~a~~~~~lv~p~g~~~~~~~-~~~~~g~-~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~l 361 (536) T protein:vir:21 284 EAIVKMSMISSKVIGLVNPAGITQPRRL-TKAQTGD-FVTGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLNSA 361 (536) T ss_pred HHHHHHHHHHhcCCcccCcccccchhhh-ccCCCcc-eecCCcccceeeeccccccchHHHHHHHHHHHHHHHHHhhhhc Confidence 7777766666665544421111111111 1112222 222233444433 33445566677777777777543332222 Q ss_pred cccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCc-cccceeeEEeCCCCCC-CHHHHHHH Q lcl|Aclame:pro 348 ESQNTGDKSGVALKFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNKS-YDYKTVQITFNHSMII-NEAEKIDM 424 (479) Q Consensus 348 ~~~~~g~~Sg~Ai~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~~-~~~~~i~i~f~~~~p~-d~~e~a~~ 424 (479) ..-+....||+.+..+.........- ..+.-.+.+.-+++-++.++...+..+ .+...+++.+.-++.. ...+.++. T Consensus 362 ~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~ 441 (536) T protein:vir:21 362 VQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDK 441 (536) T ss_pred ccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEEecHHHHHHHHHHHH Confidence 22233446888877654444443322 111122222223333333333333321 2222345555433331 11112221 Q ss_pred H----HHHhcc--------CChHHHHH----hCCCCC----CHHHHHHHHHHHHHHHHhhhhccCCC------------- Q lcl|Aclame:pro 425 A----AKSTGI--------VSDETIVS----NHPWVE----DVNDELERLKKQEDTQKEYDDLIPNN------------- 471 (479) Q Consensus 425 ~----~k~~g~--------is~et~~~----~l~~~~----d~~~El~~i~~E~~~~~~~~~~~~~~------------- 471 (479) + ..++++ +....++. .+|... -.++|++++.++++++....+..... T Consensus 442 l~~~~~~la~~~Pe~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~~~~~~~~~~~~~ 521 (536) T protein:vir:21 442 LERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALAQGMAAQATASPE 521 (536) T ss_pred HHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh Confidence 1 112222 22233332 234211 13567777766554332222211110 Q ss_pred C------CCCcCCC Q lcl|Aclame:pro 472 Q------DGVIDET 479 (479) Q Consensus 472 ~------~~~~det 479 (479) . .++.++. T Consensus 522 ~~~~~~~~~g~~~~ 535 (536) T protein:vir:21 522 AMAAAADSVGLQPG 535 (536) T ss_pred hHHhhhhccccCCC Confidence 0 0000111 No 133 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=98.74 E-value=7.3e-08 Score=59.69 Aligned_cols=319 Identities=13% Similarity=0.067 Sum_probs=149.4 Q ss_pred hhccCeeecCCchhHH-HHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCC Q lcl|Aclame:pro 93 SVGNPIVFNADDDNLT-KLLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSK 165 (479) Q Consensus 93 l~g~~~~~~~~~~~~~-~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~ 165 (479) +..-|+.+--.++..+ .+.+.+. -| .-..+...++..++.+|.+|+++..+..|.+ .+..++|..+.++.+.. T Consensus 1 ia~lp~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~~~~v~~~~~~~ 80 (348) T protein:vir:93 1 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 80 (348) T ss_pred CcccceEeEecCcCcccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCCceEEEEeCC Confidence 2233433321111111 1222221 12 2344556778888999999999999988887 57888998888776654 Q ss_pred CCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEe Q lcl|Aclame:pro 166 RQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPF 245 (479) Q Consensus 166 ~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~ 245 (479) .. .+ +|.....++.. ..+.++.+.+++.. ++ T Consensus 81 ~~-~~-----~y~~~~~~g~~----~~~~~~eiih~r~~------------------------------~~--------- 111 (348) T protein:vir:93 81 SR-EL-----YYSIHAATGNK----LIVHNMDMLHFKHI------------------------------VA--------- 111 (348) T ss_pred Cc-EE-----EEEEEcCCCeE----EEEccccEEEecCC------------------------------CC--------- Confidence 21 11 12322222321 12333344333210 00 Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc-eeeeecCCccchhhHHHH--------h-hcccceecCCCCcc Q lcl|Aclame:pro 246 KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEV-IYVLKEYPGTSLQEFIDN--------I-RYYKSIKVDGGGGV 315 (479) Q Consensus 246 ~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p-~l~~~g~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~ 315 (479) .+...|.|.++.+...++..+.... . .+...+.+ .+++.- ++...++.... . ..++++.++++.++ T Consensus 112 ~~~~~G~s~~~~~~~~i~~~~~~~~-~--~~~~~~~~~~~i~~~-~~~l~~e~~~~~~~~~~~~~~n~~~~~vl~~g~~~ 187 (348) T protein:vir:93 112 SNMVQGISPIDVLKNTTDFDNAVRT-F--NLTEMQKPDSFMLKY-GSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEI 187 (348) T ss_pred CCceeeccHHHHHHHHHHHHHHHHH-H--HHHhcCCCceeEEec-CCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceE Confidence 0122477777766666554433321 1 23333333 333221 11222221111 1 22345556665566 Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 316 DKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKI 395 (479) Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~ 395 (479) +.+..+.....+.+..+.....|+..-++|+.-.+..+..+...++...... +...|.-+++.|...+.. T Consensus 188 ~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~e~~~~~~----------~~~~l~P~~~~ie~~l~~ 257 (348) T protein:vir:93 188 EPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFY----------LQHTLLPIVKQYEEEFNR 257 (348) T ss_pred EEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHH----------HHHHHHHHHHHHHHHHHH Confidence 5555444445677777778888888888886654433332322222221112 122222222222222221 Q ss_pred cCCCcc---ccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHH-----HHHHHHHHHHHHHHh Q lcl|Aclame:pro 396 SGNKSY---DYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVN-----DELERLKKQEDTQKE 463 (479) Q Consensus 396 ~~~~~~---~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~-----~El~~i~~E~~~~~~ 463 (479) .--... ....+++.+...+..|..+.++++.++ +|+++.-.++++++.-. +-+ .-+..+.. .. T Consensus 258 ~l~~~~~~~~g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~-----~~ 332 (348) T protein:vir:93 258 KLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDT-----PL 332 (348) T ss_pred hhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcCeEeeccccccccc-----ch Confidence 110011 112355555666777899999999887 58999999998875421 111 11111111 00 Q ss_pred hhhccCCCCCCCcCCC Q lcl|Aclame:pro 464 YDDLIPNNQDGVIDET 479 (479) Q Consensus 464 ~~~~~~~~~~~~~det 479 (479) ..+.....-+..++|| T Consensus 333 ~~~~~~~gg~~n~~~~ 348 (348) T protein:vir:93 333 ELRKSLKGGDKNVNES 348 (348) T ss_pred hhcccccCCCCCcCCC Confidence 0111112222344445 No 134 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=98.70 E-value=9.7e-08 Score=59.03 Aligned_cols=387 Identities=9% Similarity=0.017 Sum_probs=175.2 Q ss_pred HHHHHHHHHHHHHhhH---H-----H-HHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhh Q lcl|Aclame:pro 22 INLVKVIEHYILKHRP---E-----K-YKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGY 92 (479) Q Consensus 22 ~~~~~~i~~~~~~~~~---~-----~-~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~ 92 (479) ..|.+.+..+..-+++ + . ...+..+.-+..... .. ....-+.++-....|+.+|+- T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~------------~v---~~~~al~~~~v~~~i~~ia~~ 65 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTI------------SV---KGKNALKVATVFACIKILSES 65 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCcc------------cc---chhhhhccHHHHHHHHHHHHh Confidence 2222222221110000 0 0 001111111000000 00 000001223334456777777 Q ss_pred hhccCeeec--CCc---hhHHH-HHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEE Q lcl|Aclame:pro 93 SVGNPIVFN--ADD---DNLTK-LLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIP 160 (479) Q Consensus 93 l~g~~~~~~--~~~---~~~~~-~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~ 160 (479) +.+-|+.+- .++ +..+. +...+. -| ....+...++...+.+|.+|+.+..+..|++ .+..++|..+.+ T Consensus 66 ia~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v 145 (432) T protein:vir:10 66 VSKLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTV 145 (432) T ss_pred hccCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEE Confidence 777787641 111 11111 222221 12 2445667788899999999999999988886 688899999988 Q ss_pred EEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 161 IWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKV 240 (479) Q Consensus 161 ~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 240 (479) ..++..... .-.+.|+.....+.. ..+.+..+.+++.. ++ T Consensus 146 ~~d~~~~~~--~~~~~~y~~~~~g~~----~~~~~~eiih~r~~------------------------------~~---- 185 (432) T protein:vir:10 146 YIDDVGLLN--SKTKMWYVVNTGGQQ----RVLKPEEILHFKNG------------------------------IT---- 185 (432) T ss_pred EEcCccccc--ccceEEEEEecCCeE----EEEccccEEEecCC------------------------------CC---- Confidence 776532111 111112222222211 11333333332110 00 Q ss_pred ceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---HHHHh--------hcccceec Q lcl|Aclame:pro 241 PFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---FIDNI--------RYYKSIKV 309 (479) Q Consensus 241 Pvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---~~~~~--------~~~~~~~~ 309 (479) .+...|.|.+..+...++............+...+.|-.+++.......+. ....+ ..++++.+ T Consensus 186 -----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl 260 (432) T protein:vir:10 186 -----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKKVFRENFESMSSGLQNSHRIALM 260 (432) T ss_pred -----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHHHHHHHHHHhcccccCCcceec Confidence 122357788887777777776666556666676777776665322211111 11111 12345666 Q ss_pred CCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 310 DGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFV 389 (479) Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li 389 (479) +++.+++.+........+.+..+...+.|+..-++|+.-.+..+..+...++.... ..+...|.-.++.| T Consensus 261 ~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~----------~~~~~~l~P~~~~i 330 (432) T protein:vir:10 261 PVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQ----------QFYTDTLQATLTMY 330 (432) T ss_pred CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHH----------HHHHHHHHHHHHHH Confidence 66666666554444455667777788888888888876554332222222211111 12222333333333 Q ss_pred HHHHHhcC--CCc-cccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHH-----HHHHHHHH Q lcl|Aclame:pro 390 CEYLKISG--NKS-YDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVND-----ELERLKKQ 457 (479) Q Consensus 390 ~~~~~~~~--~~~-~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~-----El~~i~~E 457 (479) ...+...- ... .....+++.+...+..|..+.++++.++ .|+++...++++++.-. +-+. -+..++.- T Consensus 331 e~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~ 410 (432) T protein:vir:10 331 EQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMA 410 (432) T ss_pred HHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccchhhc Confidence 33222110 000 0112355556677778999999999886 57999999988875422 1110 01111110 Q ss_pred HHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 458 EDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 458 ~~~~~~~~~~~~~~~~~~~det 479 (479) .++..+-.+. ..+....++|. T Consensus 411 ~~~~~k~~~~-~~~~~~~~~~~ 431 (432) T protein:vir:10 411 GQAYLKGGDT-NGEVSKEGNEG 431 (432) T ss_pred cccccCCCCC-CCCCCCCCCCC Confidence 0000000000 00001111122 No 135 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=98.70 E-value=9.7e-08 Score=59.03 Aligned_cols=387 Identities=9% Similarity=0.017 Sum_probs=175.2 Q ss_pred HHHHHHHHHHHHHhhH---H-----H-HHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhh Q lcl|Aclame:pro 22 INLVKVIEHYILKHRP---E-----K-YKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGY 92 (479) Q Consensus 22 ~~~~~~i~~~~~~~~~---~-----~-~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~ 92 (479) ..|.+.+..+..-+++ + . ...+..+.-+..... .. ....-+.++-....|+.+|+- T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~------------~v---~~~~al~~~~v~~~i~~ia~~ 65 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTI------------SV---KGKNALKVATVFACIKILSES 65 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCcc------------cc---chhhhhccHHHHHHHHHHHHh Confidence 2222222221110000 0 0 001111111000000 00 000001223334456777777 Q ss_pred hhccCeeec--CCc---hhHHH-HHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEE Q lcl|Aclame:pro 93 SVGNPIVFN--ADD---DNLTK-LLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIP 160 (479) Q Consensus 93 l~g~~~~~~--~~~---~~~~~-~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~ 160 (479) +.+-|+.+- .++ +..+. +...+. -| ....+...++...+.+|.+|+.+..+..|++ .+..++|..+.+ T Consensus 66 ia~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v 145 (432) T protein:vir:10 66 VSKLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTV 145 (432) T ss_pred hccCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEE Confidence 777787641 111 11111 222221 12 2445667788899999999999999988886 688899999988 Q ss_pred EEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 161 IWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKV 240 (479) Q Consensus 161 ~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 240 (479) ..++..... .-.+.|+.....+.. ..+.+..+.+++.. ++ T Consensus 146 ~~d~~~~~~--~~~~~~y~~~~~g~~----~~~~~~eiih~r~~------------------------------~~---- 185 (432) T protein:vir:10 146 YIDDVGLLN--SKTKMWYVVNTGGQQ----RVLKPEEILHFKNG------------------------------IT---- 185 (432) T ss_pred EEcCccccc--ccceEEEEEecCCeE----EEEccccEEEecCC------------------------------CC---- Confidence 776532111 111112222222211 11333333332110 00 Q ss_pred ceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---HHHHh--------hcccceec Q lcl|Aclame:pro 241 PFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---FIDNI--------RYYKSIKV 309 (479) Q Consensus 241 Pvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---~~~~~--------~~~~~~~~ 309 (479) .+...|.|.+..+...++............+...+.|-.+++.......+. ....+ ..++++.+ T Consensus 186 -----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl 260 (432) T protein:vir:10 186 -----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKKVFRENFESMSSGLQNSHRIALM 260 (432) T ss_pred -----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHHHHHHHHHHhcccccCCcceec Confidence 122357788887777777776666556666676777776665322211111 11111 12345666 Q ss_pred CCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 310 DGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFV 389 (479) Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li 389 (479) +++.+++.+........+.+..+...+.|+..-++|+.-.+..+..+...++.... ..+...|.-.++.| T Consensus 261 ~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~----------~~~~~~l~P~~~~i 330 (432) T protein:vir:10 261 PVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQ----------QFYTDTLQATLTMY 330 (432) T ss_pred CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHH----------HHHHHHHHHHHHHH Confidence 66666666554444455667777788888888888876554332222222211111 12222333333333 Q ss_pred HHHHHhcC--CCc-cccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHH-----HHHHHHHH Q lcl|Aclame:pro 390 CEYLKISG--NKS-YDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVND-----ELERLKKQ 457 (479) Q Consensus 390 ~~~~~~~~--~~~-~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~-----El~~i~~E 457 (479) ...+...- ... .....+++.+...+..|..+.++++.++ .|+++...++++++.-. +-+. -+..++.- T Consensus 331 e~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~ 410 (432) T protein:vir:10 331 EQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMA 410 (432) T ss_pred HHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccchhhc Confidence 33222110 000 0112355556677778999999999886 57999999988875422 1110 01111110 Q ss_pred HHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 458 EDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 458 ~~~~~~~~~~~~~~~~~~~det 479 (479) .++..+-.+. ..+....++|. T Consensus 411 ~~~~~k~~~~-~~~~~~~~~~~ 431 (432) T protein:vir:10 411 GQAYLKGGDT-NGEVSKEGNEG 431 (432) T ss_pred cccccCCCCC-CCCCCCCCCCC Confidence 0000000000 00001111122 No 136 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=98.70 E-value=9.7e-08 Score=59.03 Aligned_cols=387 Identities=9% Similarity=0.017 Sum_probs=175.2 Q ss_pred HHHHHHHHHHHHHhhH---H-----H-HHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhh Q lcl|Aclame:pro 22 INLVKVIEHYILKHRP---E-----K-YKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGY 92 (479) Q Consensus 22 ~~~~~~i~~~~~~~~~---~-----~-~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~ 92 (479) ..|.+.+..+..-+++ + . ...+..+.-+..... .. ....-+.++-....|+.+|+- T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~------------~v---~~~~al~~~~v~~~i~~ia~~ 65 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTI------------SV---KGKNALKVATVFACIKILSES 65 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCcc------------cc---chhhhhccHHHHHHHHHHHHh Confidence 2222222221110000 0 0 001111111000000 00 000001223334456777777 Q ss_pred hhccCeeec--CCc---hhHHH-HHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEE Q lcl|Aclame:pro 93 SVGNPIVFN--ADD---DNLTK-LLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIP 160 (479) Q Consensus 93 l~g~~~~~~--~~~---~~~~~-~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~ 160 (479) +.+-|+.+- .++ +..+. +...+. -| ....+...++...+.+|.+|+.+..+..|++ .+..++|..+.+ T Consensus 66 ia~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v 145 (432) T protein:vir:10 66 VSKLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTV 145 (432) T ss_pred hccCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEE Confidence 777787641 111 11111 222221 12 2445667788899999999999999988886 688899999988 Q ss_pred EEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 161 IWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKV 240 (479) Q Consensus 161 ~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 240 (479) ..++..... .-.+.|+.....+.. ..+.+..+.+++.. ++ T Consensus 146 ~~d~~~~~~--~~~~~~y~~~~~g~~----~~~~~~eiih~r~~------------------------------~~---- 185 (432) T protein:vir:10 146 YIDDVGLLN--SKTKMWYVVNTGGQQ----RVLKPEEILHFKNG------------------------------IT---- 185 (432) T ss_pred EEcCccccc--ccceEEEEEecCCeE----EEEccccEEEecCC------------------------------CC---- Confidence 776532111 111112222222211 11333333332110 00 Q ss_pred ceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---HHHHh--------hcccceec Q lcl|Aclame:pro 241 PFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---FIDNI--------RYYKSIKV 309 (479) Q Consensus 241 Pvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---~~~~~--------~~~~~~~~ 309 (479) .+...|.|.+..+...++............+...+.|-.+++.......+. ....+ ..++++.+ T Consensus 186 -----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl 260 (432) T protein:vir:10 186 -----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKKVFRENFESMSSGLQNSHRIALM 260 (432) T ss_pred -----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHHHHHHHHHHhcccccCCcceec Confidence 122357788887777777776666556666676777776665322211111 11111 12345666 Q ss_pred CCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 310 DGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFV 389 (479) Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li 389 (479) +++.+++.+........+.+..+...+.|+..-++|+.-.+..+..+...++.... ..+...|.-.++.| T Consensus 261 ~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~----------~~~~~~l~P~~~~i 330 (432) T protein:vir:10 261 PVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQ----------QFYTDTLQATLTMY 330 (432) T ss_pred CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHH----------HHHHHHHHHHHHHH Confidence 66666666554444455667777788888888888876554332222222211111 12222333333333 Q ss_pred HHHHHhcC--CCc-cccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHH-----HHHHHHHH Q lcl|Aclame:pro 390 CEYLKISG--NKS-YDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVND-----ELERLKKQ 457 (479) Q Consensus 390 ~~~~~~~~--~~~-~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~-----El~~i~~E 457 (479) ...+...- ... .....+++.+...+..|..+.++++.++ .|+++...++++++.-. +-+. -+..++.- T Consensus 331 e~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~ 410 (432) T protein:vir:10 331 EQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMA 410 (432) T ss_pred HHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccchhhc Confidence 33222110 000 0112355556677778999999999886 57999999988875422 1110 01111110 Q ss_pred HHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 458 EDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 458 ~~~~~~~~~~~~~~~~~~~det 479 (479) .++..+-.+. ..+....++|. T Consensus 411 ~~~~~k~~~~-~~~~~~~~~~~ 431 (432) T protein:vir:10 411 GQAYLKGGDT-NGEVSKEGNEG 431 (432) T ss_pred cccccCCCCC-CCCCCCCCCCC Confidence 0000000000 00001111122 No 137 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=98.68 E-value=1.1e-07 Score=58.65 Aligned_cols=440 Identities=10% Similarity=0.053 Sum_probs=201.9 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |.- -..+....+.+..+.+ ..+|.......+++|+- -.|+.-... .. .......++.-+ T Consensus 1 ~~~------------~~~~~~~~~~~r~~~l-~~~R~~~e~~w~e~~~y--~lP~~~~~~-~~-----~~~~~~~~~~ds 59 (522) T protein:vir:94 1 MAE------------REGFAAEGAKAVYDRL-KNGRQPYETRAQNCAAV--TIPSLFPKE-SD-----NSSTEYTTPWQA 59 (522) T ss_pred Ccc------------cchhhHHHHHHHHHHH-HHHhhHHHHHHHHHHHH--hcccccCCC-CC-----cccccccccccc Confidence 211 1122233344444433 23343333333333331 111110000 00 001112234556 Q ss_pred hHHHHHHHHHhhhhcc--C----eeecCCc-------------hhHHHHH--------HHHHhcCHHHHHHHHHHHHHhC Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGN--P----IVFNADD-------------DNLTKLL--------NDLLGEEFDDTITELYLNASNK 133 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~--~----~~~~~~~-------------~~~~~~~--------~~~~~n~~~~~~~~~~~~~~~~ 133 (479) -+...++.+|+.|++- | +++...+ .+....+ ..+..++|.....++.++...+ T Consensus 60 t~~~a~~~Las~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~ 139 (522) T protein:vir:94 60 VGARCLNNLAAKLMLALFPQSPWMRLTVSEYEAKTLSQDSEAAARVDEGLAMVERVLMAYMETNSFRVPLFEALKQLIVS 139 (522) T ss_pred cHHHHHHHHHHHHHhhcCCCCcccccccchhhhhccCcccchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh Confidence 6677777777776543 2 1222111 1122222 2344578999999999999999 Q ss_pred CeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecc-------------cCceEEEEEEEeCCcEE Q lcl|Aclame:pro 134 GVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDI-------------DGNKIKRVEYYTENDIT 199 (479) Q Consensus 134 G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~y~~~~i~ 199 (479) |.+++++..+.++.+ +++.++-.++++--|. ..++..++|.++..-. ..+....+++|+. ++ T Consensus 140 G~a~l~~~~~~~~~~~~~~~~pl~~y~v~~d~--~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~--v~ 215 (522) T protein:vir:94 140 GNCLLYIPEPEQGTYSPMRMYRLVSYVVQRDA--FGNILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTH--IY 215 (522) T ss_pred CcEeEeeeccCCCceeeEEEEEcceEEEeeCC--CcCeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEE--EE Confidence 999988876665543 5777776665544443 3456566665554211 0111233444431 00 Q ss_pred EEEEcCCccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 YFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLAD 274 (479) Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~ 274 (479) ...+.+... ...............+|..+|++.+. ++.+|+|-.++..+-+..+|...-.... T Consensus 216 ---~~~~~~~~~---------~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~ 283 (522) T protein:vir:94 216 ---RQDDEYLRY---------EEVEGIEVTGTDGSYPLTACPYIPVRMVRLDGEDYGRSYCEEYLGDLNSLETITEAITK 283 (522) T ss_pred ---eeCCceeEE---------eeccCceecccCCCCccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHH Confidence 111111100 01111111112223467778877654 3468999999999999999999999999 Q ss_pred HHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeeec--CCCHHHHHHHHHHHHHHHHHHhCCCCCccccc Q lcl|Aclame:pro 275 NLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEI--NIPVEAKKELLDRLEKNIIIFGQGVNPESQNT 352 (479) Q Consensus 275 ~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~ 352 (479) ..+....|.+.+.-.+....... .....+ .+.....++++.+.. ..+.......++.++..|........+..-+. T Consensus 284 ~~~~~~~p~~~v~~~g~~~~~~~-~~~~~g-~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~~~~~ 361 (522) T protein:vir:94 284 MAKVASKVVGLVNPNGITQPRRL-NKAATG-EFVAGRVEDINFLQLTKGQDFTIAKSVADAIEQRLGWAFLLNSAVQRNA 361 (522) T ss_pred HHHHHhCCceeecccccccchhe-eccCCc-eeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhhccCCC Confidence 99999999877642222221111 111112 233344455565543 34566677777777777766443332322334 Q ss_pred ccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceeeEEeCCCCCCC-HHHHHHHHHH-- Q lcl|Aclame:pro 353 GDKSGVALKFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNK-SYDYKTVQITFNHSMIIN-EAEKIDMAAK-- 427 (479) Q Consensus 353 g~~Sg~Ai~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~~i~i~f~~~~p~d-~~e~a~~~~k-- 427 (479) ...||+.+..+.....+...- ..+.-.+.+.-+++-.+.++...+.. ..+...+++.+.-++..- ..+.++.+.. T Consensus 362 ~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~v~~~s~La~~qr~~~~~~l~~~~ 441 (522) T protein:vir:94 362 ERVTAEEIRYVAGELEATLGGVYSVQSQELQLPIVRVLMNQLQSAGMIPDLPKEAVEPTVSTGLEALGRGQDLEKLTQAV 441 (522) T ss_pred ccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccEEeeEecHHHHHHHHHHHHHHHHHH Confidence 457888877654444333321 11222222322333333333333332 233345677775554431 1111222211 Q ss_pred --Hhcc--------CChHHHH----HhCCC-CC---CHHHHHHHHHHHHHHHHhhhhcc----CCCCCCCcCCC Q lcl|Aclame:pro 428 --STGI--------VSDETIV----SNHPW-VE---DVNDELERLKKQEDTQKEYDDLI----PNNQDGVIDET 479 (479) Q Consensus 428 --~~g~--------is~et~~----~~l~~-~~---d~~~El~~i~~E~~~~~~~~~~~----~~~~~~~~det 479 (479) ++++ +....++ ..+|. .. -.++|++++.++++++....+.. ....-+.+.++ T Consensus 442 ~~ia~l~P~~~~~~id~d~~~~~~a~~~Gv~~~~ivr~~ee~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~ 515 (522) T protein:vir:94 442 NMMTGLQPLSQDPDINLPTLKLRLLNALGIDTAGLLLTQDEKIQRMAEQSSQQAVVQGASAAGANMGAAVGQGA 515 (522) T ss_pred HHHHhccchhhhhcCCHHHHHHHHHHHcCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc Confidence 1111 2222222 22332 11 12456666655543322221111 11111222222 No 138 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=98.60 E-value=2.1e-07 Score=57.17 Aligned_cols=389 Identities=9% Similarity=0.005 Sum_probs=172.6 Q ss_pred HHHHHHHHh---ccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHH Q lcl|Aclame:pro 9 TDLIKVQLK---KESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLL 85 (479) Q Consensus 9 ~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~i 85 (479) |..+..-+. +..+. . .. .......+..+.-+..... .. ....-+...-.... T Consensus 1 M~~~~~~f~~~~r~~~~-~-~~--------~~~~~~~~~~~~g~~~~~~--------------~v-~~~~al~~~~v~~~ 55 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQ-V-IE--------LNKDDEKLLEWLGISPSTI--------------SV-KGKNALKVATVFAC 55 (429) T ss_pred CchhhhhhcccccCccc-c-cc--------cCCChHHHHHHhcCCCCcc--------------ee-chhhhhccHHHHHH Confidence 222211110 00000 0 00 0000001111111000000 00 00000122334456 Q ss_pred HHHHHhhhhccCeeec--CCc---hhHHH-HHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEE Q lcl|Aclame:pro 86 VDQKVGYSVGNPIVFN--ADD---DNLTK-LLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVII 153 (479) Q Consensus 86 v~~~a~~l~g~~~~~~--~~~---~~~~~-~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~ 153 (479) |+.+|.-+.+-|+.+- .++ ...+. +...+. -| ....+...+....+.+|.+|+.+..+..|++ .+..+ T Consensus 56 i~~ia~~ia~l~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i 135 (429) T protein:vir:10 56 IKILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPI 135 (429) T ss_pred HHHHHHhhccCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEE Confidence 6777777777777641 111 11111 222221 12 2345667788889999999999999988886 68889 Q ss_pred ccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 154 PAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNK 233 (479) Q Consensus 154 ~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479) +|..+.+..++.... ....+.|+.....|.. ..+.++.+.++... T Consensus 136 ~~~~v~v~~~~~~~~--~~~~~~~~~~~~~g~~----~~~~~~evih~~~~----------------------------- 180 (429) T protein:vir:10 136 DASKVTVYIDDVGLL--NSKTKMWYVVNTGGQQ----RVLKPEEILHFKNG----------------------------- 180 (429) T ss_pred cCceeEEEEcCcccc--cccceEEEEEccCCeE----EEEccccEEEecCC----------------------------- Confidence 999998877654211 1111122222222211 12333333332110 Q ss_pred cccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---HHHHh--------h Q lcl|Aclame:pro 234 EQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---FIDNI--------R 302 (479) Q Consensus 234 ~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---~~~~~--------~ 302 (479) ++ .+...|.|.+..+...++.......-....+...+.|-.+++.......+. ....+ . T Consensus 181 -~~---------~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~~~~~~~~~~~~g~~n 250 (429) T protein:vir:10 181 -IT---------LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKKVFRENFESMSSGLQN 250 (429) T ss_pred -CC---------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHHHHHHHHHHhccccc Confidence 00 122347788888877777766655556666666666766655322211111 11111 1 Q ss_pred cccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 303 YYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAI 382 (479) Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l 382 (479) .++++.++++.+++.+........+.+..+...+.|+..-++|+.-.+.....+...++.. ....+...| T Consensus 251 ~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~sn~e~~----------~~~f~~~~l 320 (429) T protein:vir:10 251 SHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQ----------QQQFYTDTL 320 (429) T ss_pred cCceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHH----------HHHHHHHHH Confidence 2345566666555555544444556667777888888888888655443222121111111 111223333 Q ss_pred HHHHHHHHHHHHhcC--CCc-cccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHH-----H Q lcl|Aclame:pro 383 RELLWFVCEYLKISG--NKS-YDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVND-----E 450 (479) Q Consensus 383 ~~~~~li~~~~~~~~--~~~-~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~-----E 450 (479) .-.++.|...+...- ... .....+++.+...+..|..+.++++.++ .|+++...++++++.-. ..+. - T Consensus 321 ~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n 400 (429) T protein:vir:10 321 QATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGN 400 (429) T ss_pred HHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccc Confidence 333333333222111 000 0112345555667778999999999887 57999999988875422 1111 0 Q ss_pred HHHHHHHHHHH--HhhhhccCCCCCCCcC Q lcl|Aclame:pro 451 LERLKKQEDTQ--KEYDDLIPNNQDGVID 477 (479) Q Consensus 451 l~~i~~E~~~~--~~~~~~~~~~~~~~~d 477 (479) +..++.-.+.. ..-.+....++.++++ T Consensus 401 ~~~~d~~~~~~~k~g~~~~~~~~~~~e~~ 429 (429) T protein:vir:10 401 MLPIDMAGQAYLKGGDTNGEVSKEGNEGN 429 (429) T ss_pred ccchhhccccccCCCCCCCCCCCCCCCCC Confidence 11111100000 0000111111111112 No 139 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=98.60 E-value=2.2e-07 Score=57.10 Aligned_cols=406 Identities=13% Similarity=0.090 Sum_probs=193.5 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHh-----hHHHHHH-HHHHhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKH-----RPEKYKQ-GEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~-~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |.-++.....-+......+....-+--+.+....+ -..++.. ++..-.|+... +...+ ++... T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~-~~~L~--------edm~e-- 69 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQA-QAELF--------MDMEE-- 69 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHHH-HHHHH--------HHHHh-- Confidence 88888776655544332221111111111111100 0112222 22222222100 00000 00000 Q ss_pred ceeecchHHHHHHHHHhhhhccCeeecCC------chhHHHHHHHHHhc--CHHHHHHHHHHHHHhCCeE-EEEEEeCCC Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVFNAD------DDNLTKLLNDLLGE--EFDDTITELYLNASNKGVE-WLHPYINRK 145 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~~~~------~~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~G~~-~~~v~~d~~ 145 (479) ......-.+.+....+.+.+.++... +....+.++.+..+ +|...+..+. ++.-||.+ ++.+|...+ T Consensus 70 ---~D~~i~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-dA~~~G~s~~Ei~w~~~~ 145 (526) T protein:vir:79 70 ---RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQG 145 (526) T ss_pred ---hChHHHHHHHHHHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHHHH-hhhhhcceeEEEEEeecC Confidence 12455566777778888888887532 22344456666543 5787776664 48889985 555565444 Q ss_pred CceE---EEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccc Q lcl|Aclame:pro 146 GEFK---YVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTD 222 (479) Q Consensus 146 ~~~~---i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 222 (479) |... +.+.+|..+. |++..... ++. .....+| .. +. T Consensus 146 g~~~~~~l~~r~~~~F~--~~~~~~~~----l~~-~~~~~~g-----~~-l~---------------------------- 184 (526) T protein:vir:79 146 REWMPLAFHHRPQSWFQ--LNPEDQNE----LRL-RDNSPAG-----EA-LQ---------------------------- 184 (526) T ss_pred CceeEEEeeeecccceE--eccCCCcE----EEe-cCCCCCc-----ee-ec---------------------------- Confidence 5433 3444443222 33322111 110 0000111 00 11 Q ss_pred ccccccccccccccccccceEEec--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---- Q lcl|Aclame:pro 223 IQEGHFRINNKEQGWGKVPFIPFK--NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---- 296 (479) Q Consensus 223 ~~~~~~~~~~~~~~~g~vPvv~~~--n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---- 296 (479) +++.+-.++-. .+..|.|.+..+....--=+..+.+++.-++.++.|+++.+-..+...++ T Consensus 185 -------------~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~~igky~~~a~~~ek~~L 251 (526) T protein:vir:79 185 -------------PFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATL 251 (526) T ss_pred -------------CCceEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceEEEecCCCCCHHHHHHH Confidence 11111111111 24567787777655544445577888888999999999987543333222 Q ss_pred --HHHHhhcccceecCCCCcceeeecC-CCHHHHHHHHHHHHHHHHHHhCCCCCcccc-cccccHHHH-HHHHHHHHHHH Q lcl|Aclame:pro 297 --FIDNIRYYKSIKVDGGGGVDKLEIN-IPVEAKKELLDRLEKNIIIFGQGVNPESQN-TGDKSGVAL-KFLYSLLDLKC 371 (479) Q Consensus 297 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~-~g~~Sg~Ai-~~~~~~l~~k~ 371 (479) ....+....+..++.+..+++++.. .....++..++...+.|...--+..++.+. .|+.+.-|+ +....-....+ T Consensus 252 ~~av~~i~~da~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~a~g~vh~~v~~di~ 331 (526) T protein:vir:79 252 LRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDIL 331 (526) T ss_pred HHHHHHHhcCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCcchhhhhHHHHHHHHHHHH Confidence 2345566677888999999999964 555678999999888887654433343321 121111121 11111122233 Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCCCccc-cceeeEEeCCCCCCCHHHHHHHHHHHh--cc-CChHHHHHhCCCCCC Q lcl|Aclame:pro 372 SKTEKKFKKAIR-ELLWFVCEYLKISGNKSYD-YKTVQITFNHSMIINEAEKIDMAAKST--GI-VSDETIVSNHPWVED 446 (479) Q Consensus 372 ~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~-~~~i~i~f~~~~p~d~~e~a~~~~k~~--g~-is~et~~~~l~~~~d 446 (479) ..-.+.+...+. ++++-++. .......+ .....+.|....+.|..+.++.+.+++ |+ +|.+.+.++++. .. T Consensus 332 ~aDa~~i~~tln~~Li~~l~~---~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~gi-p~ 407 (526) T protein:vir:79 332 ASDARQLAATLSRDLLWPLLV---LNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQ 407 (526) T ss_pred HHHHHHHHHHHHHHHHHHHHH---hCCCCcCCccccceEEeCCCCcccHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CC Confidence 344455555553 35554443 22222211 234578899999999999999999885 55 899999999875 22 Q ss_pred HH--HHHHHHHHHHH-HHHhhhh--ccCC-CCCC-CcCC-C Q lcl|Aclame:pro 447 VN--DELERLKKQED-TQKEYDD--LIPN-NQDG-VIDE-T 479 (479) Q Consensus 447 ~~--~El~~i~~E~~-~~~~~~~--~~~~-~~~~-~~de-t 479 (479) ++ +++..-..... ....... ..+. .... ..++ + T Consensus 408 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) T protein:vir:79 408 PAKNEPVLRPAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) T ss_pred CCCchhhccccCCccccccccccccccccccccccCchhhH Confidence 22 11110000000 0000000 0000 0000 0000 0 No 140 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=98.53 E-value=3.5e-07 Score=55.95 Aligned_cols=395 Identities=8% Similarity=-0.020 Sum_probs=178.7 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHH-HHHHhccCCcccccccccccccccccccccCcceeecchHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQ-GEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVD 87 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~ 87 (479) |..+..-+.+.....-..... ... ..+.. .-.++.+-- ...........-+..+-....|+ T Consensus 1 MG~f~~lf~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~g-------------~~~~~~v~~~~al~~~~v~~ci~ 62 (422) T protein:vir:13 1 MGFLRGLFNKKNNNDEKRSNY--DED---IGIDISDSNFWEKFG-------------IKLNFSVRGKRALKENTVYVCTK 62 (422) T ss_pred CchhhhhhhccCCccchhhhh--hhc---cccccCcchhhhhcc-------------ccCCcccchhhhhccHHHHHHHH Confidence 223222221111110000000 000 00000 001111000 00000000001122334445677 Q ss_pred HHHhhhhccCeeecCCchh--HHHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeE Q lcl|Aclame:pro 88 QKVGYSVGNPIVFNADDDN--LTKLLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAI 159 (479) Q Consensus 88 ~~a~~l~g~~~~~~~~~~~--~~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~ 159 (479) .+++-+.+-|+.+--+.+. ...+...+. -|. ...+...++...+.+|.+|+.+..+..|++ .+..++|..+. T Consensus 63 ~ia~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~ 142 (422) T protein:vir:13 63 IRAESIGKLSLKIYKDKEEYKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNVT 142 (422) T ss_pred HHHHhhhhCceEEEecCcccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceE Confidence 7777777778775222111 112223332 132 346677788899999999999999988876 68899999999 Q ss_pred EEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 160 PIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGK 239 (479) Q Consensus 160 ~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 239 (479) ++.++....... .-.+|.....+|.. ..+.++.+.+++.. +. T Consensus 143 ~~~~~~~~~~~~-~~~~y~~~~~~g~~----~~~~~~eiih~~~~------------------------------~~--- 184 (422) T protein:vir:13 143 KIIDDDNFLSSL-SKVWYVVTDKNGKE----HKLLPDEMLHFIGD------------------------------IT--- 184 (422) T ss_pred EEEcCCcceecc-ceEEEEEEeCCCeE----EEEcccceEEEcCC------------------------------CC--- Confidence 988765321111 11112222222221 11222333332110 00 Q ss_pred cceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchh---hHHHHh--------hccccee Q lcl|Aclame:pro 240 VPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQ---EFIDNI--------RYYKSIK 308 (479) Q Consensus 240 vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~---~~~~~~--------~~~~~~~ 308 (479) .+...|.|.+..+...++..........+.+...+.|-.++........+ .....+ ..++++. T Consensus 185 ------~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~v 258 (422) T protein:vir:13 185 ------LDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVGDLDEKAKKIFKKEFESMSNGLENAHSISL 258 (422) T ss_pred ------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHhcCccccCCcee Confidence 11235778888887777776666656666666666777666532221111 111111 1234566 Q ss_pred cCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 VDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWF 388 (479) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~l 388 (479) ++++.+++.+........+.+..+..+..|...-++|+.-.+...+.+...++.... ..+...|.-.++. T Consensus 259 l~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~e~~~~----------~f~~~~l~P~~~~ 328 (422) T protein:vir:13 259 LPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERATFNNLTEQQK----------DFYVTTLQSSLTV 328 (422) T ss_pred cCCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHH----------HHHHHHHHHHHHH Confidence 666666666665555556677777888888888888876554433222222221111 1222233333333 Q ss_pred HHHHHHhcCCCcc---ccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHHHHHHHHHHHHHH Q lcl|Aclame:pro 389 VCEYLKISGNKSY---DYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVNDELERLKKQEDTQ 461 (479) Q Consensus 389 i~~~~~~~~~~~~---~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~El~~i~~E~~~~ 461 (479) |...+...--... ....+++.+...+..|..+.++++.++ .|+++.-.++++++.-. +-+.-+....----.. T Consensus 329 ie~~l~~~Ll~~~~~~~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~l~~ 408 (422) T protein:vir:13 329 YEQEIQDKLFSQYETLQDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIEANEARRRENLPPVEGGDRLLVNGNMIPIEM 408 (422) T ss_pred HHHHHHHhhCChhhhcCCceEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccCccchhh Confidence 3222221110011 112344444566667899999998886 57999999998875422 1111000000000000 Q ss_pred HhhhhccCCCCCCCc Q lcl|Aclame:pro 462 KEYDDLIPNNQDGVI 476 (479) Q Consensus 462 ~~~~~~~~~~~~~~~ 476 (479) ... +..++.++|+. T Consensus 409 ~~~-~~~~~g~~~g~ 422 (422) T protein:vir:13 409 AGE-QYKKGGEKGGK 422 (422) T ss_pred ccc-ccccCCCcCCC Confidence 000 11122222222 No 141 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=98.52 E-value=3.8e-07 Score=55.80 Aligned_cols=371 Identities=11% Similarity=0.013 Sum_probs=158.7 Q ss_pred cCcceeecchHHHHHHHHHhhhhccCeeecCC-----c----hhHHHHHHHHHh---c-----------CHHHHHHHHHH Q lcl|Aclame:pro 72 KVNNKAINNYHKLLVDQKVGYSVGNPIVFNAD-----D----DNLTKLLNDLLG---E-----------EFDDTITELYL 128 (479) Q Consensus 72 ~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~-----~----~~~~~~~~~~~~---n-----------~~~~~~~~~~~ 128 (479) .....-..++....|+.+++.+.+-|+.+-.. . ......+..+.. | .+...+..+.. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 01100125778889999999999999876311 1 111222222221 2 12345566788 Q ss_pred HHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCc Q lcl|Aclame:pro 129 NASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNS 207 (479) Q Consensus 129 ~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~ 207 (479) +...+|.+|+.+..+..|++ .+..++|..+.+.-|... . + .. .++. ..++.+|......... + T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~---~---~---~~--~~~~-~~~~~~~~~~~~~~~~----~ 144 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERG---F---V---QL--LEEK-EKYFGVAGDRYQTNGN----G 144 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecce---e---E---ee--cCCc-eeeEEeccccceeecc----c Confidence 89999999999999988876 588889988877655431 0 0 00 0111 1111111111100000 0 Q ss_pred cccccccccccccccccccccccccccccccccceEEecC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 208 FIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN-----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEV 282 (479) Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p 282 (479) ....... ...... ......+..=-|++++. ...|.|.+..+...++....+..-....+...+.| T Consensus 145 ~~~~~~~----~~~~~~------~~~~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p 214 (467) T protein:vir:31 145 DLDPVFV----DADDGS------TGTSVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVP 214 (467) T ss_pred ceeeeee----eecccc------ccceeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 0000000 000000 00000011111344432 23577877766666554444333333344455556 Q ss_pred eeee--ecCCccc--hhhHHHHhh-------------------cccceecCCCCcceeeec------C--CCHHHHHHHH Q lcl|Aclame:pro 283 IYVL--KEYPGTS--LQEFIDNIR-------------------YYKSIKVDGGGGVDKLEI------N--IPVEAKKELL 331 (479) Q Consensus 283 ~l~~--~g~~~~~--~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~ 331 (479) -.++ ++..... .+.....+. .+....+..+.+.+.+.. + .....+.+.. T Consensus 215 ~gil~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~ 294 (467) T protein:vir:31 215 RIAIIVKGAELTEKGREEMRNLIEDNNEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFR 294 (467) T ss_pred ceEEEecCcCCCHHHHHHHHHHHHhhhcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHH Confidence 5444 3321111 111111111 111223333333333221 1 1234466777 Q ss_pred HHHHHHHHHHhCCCCCccccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCcccccee Q lcl|Aclame:pro 332 DRLEKNIIIFGQGVNPESQNT--GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS---GNKSYDYKTV 406 (479) Q Consensus 332 ~~l~~~i~~~s~~~~~~~~~~--g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~---~~~~~~~~~i 406 (479) +...+.|...-++|+.-.+.. ++. +..++...... +...+.-+++.+...+... .........+ T Consensus 295 ~~~~~~Ia~~fgVpp~~lG~~~~~~~-~s~~e~~~~~f----------~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~i 363 (467) T protein:vir:31 295 GRNEHDILKVHDVPPVIAGVVESGAF-STDAEEQRKEF----------AEETIQPKQHDFGELLYELVHKQGLDAPDWTI 363 (467) T ss_pred HHHHHHHHHHhCCCHHHcccCCCCCc-ccCHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhcchhhccCCceE Confidence 777888888777776443322 121 11111111111 1111222222222221111 1111122346 Q ss_pred eEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHH---HHHHHHHH-HHhhhhccCCCCC---CCcC Q lcl|Aclame:pro 407 QITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELE---RLKKQEDT-QKEYDDLIPNNQD---GVID 477 (479) Q Consensus 407 ~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~~El~---~i~~E~~~-~~~~~~~~~~~~~---~~~d 477 (479) ++.+...+..|..+.++++.++ .|+++.-.++++++.-.-+++++- -+..+... .....+....... +..| T Consensus 364 ~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~Gl~pi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (467) T protein:vir:31 364 EFELAKPDTKLQDVEIASQRVQAMQGLLTVNELRDEFGFEPFPEEHVYGGETLVAEVTGGSGPGGGIGDQIEQLVEDRAD 443 (467) T ss_pred EEecchhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCcccccCCcccccccccccCCCCcccCcCCCCCCCccc Confidence 7777888889999999988876 689999999998865321122210 00000000 0000000000001 1111 Q ss_pred CC Q lcl|Aclame:pro 478 ET 479 (479) Q Consensus 478 et 479 (479) ++ T Consensus 444 ~~ 445 (467) T protein:vir:31 444 EI 445 (467) T ss_pred ch Confidence 11 No 142 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=98.51 E-value=4e-07 Score=55.68 Aligned_cols=406 Identities=13% Similarity=0.079 Sum_probs=195.5 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHh-----hHHHHHHHHH-HhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKH-----RPEKYKQGEE-YYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~-yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |.-++..+..-|......+.....+--+......| -..++....+ .-.|+... +...+ +.... T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~-~~~L~--------e~m~e-- 69 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQA-QAELF--------MDMEE-- 69 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCHHH-HHHHH--------HHHHh-- Confidence 88888777665554333222221111111111111 0112222111 11121100 00000 00000 Q ss_pred ceeecchHHHHHHHHHhhhhccCeeecCC------chhHHHHHHHHHhc--CHHHHHHHHHHHHHhCCeE-EEEEEeCCC Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVFNAD------DDNLTKLLNDLLGE--EFDDTITELYLNASNKGVE-WLHPYINRK 145 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~~~~------~~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~G~~-~~~v~~d~~ 145 (479) ......-.+.+....+.+.+.++... +....+.++.+..+ +|...+..+. ++.-||.+ ++.+|...+ T Consensus 70 ---~D~~i~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~ 145 (526) T protein:vir:99 70 ---RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQG 145 (526) T ss_pred ---hChHHHHHHHHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHH-HhhhhcceeEEEEEeecC Confidence 12444556777777788888877532 22344556666543 5887777775 68889985 555565444 Q ss_pred CceE---EEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccc Q lcl|Aclame:pro 146 GEFK---YVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTD 222 (479) Q Consensus 146 ~~~~---i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 222 (479) |... +.+.+|+.+. |++..... ++. .....+|. .+ . T Consensus 146 g~~~~~~l~~r~~~~f~--~~~~~~~~----l~~-~~~~~~g~-----~l-~---------------------------- 184 (526) T protein:vir:99 146 REWMPLAFHHRPQSWFQ--LNPEDQNE----LRL-RDNSPAGE-----AL-Q---------------------------- 184 (526) T ss_pred CceeEEEeeeeccccee--eccCCCcE----EEe-cCCCCCce-----ee-c---------------------------- Confidence 5433 3444443322 23322111 110 00000110 00 1 Q ss_pred ccccccccccccccccccceEEec--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---- Q lcl|Aclame:pro 223 IQEGHFRINNKEQGWGKVPFIPFK--NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---- 296 (479) Q Consensus 223 ~~~~~~~~~~~~~~~g~vPvv~~~--n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---- 296 (479) +++.+-.++-. .+..|.|.+..+....--=+..+.+++.-++.++.|+++.+-..+...++ T Consensus 185 -------------~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~a~~~ek~~L 251 (526) T protein:vir:99 185 -------------PFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATL 251 (526) T ss_pred -------------CCCeEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceEEEecCCCCCHHHHHHH Confidence 12222111111 24567787777665555555677888888999999999987443333222 Q ss_pred --HHHHhhcccceecCCCCcceeeecC-CCHHHHHHHHHHHHHHHHHHhCCCCCcccc-cccccHHHH-HHHHHHHHHHH Q lcl|Aclame:pro 297 --FIDNIRYYKSIKVDGGGGVDKLEIN-IPVEAKKELLDRLEKNIIIFGQGVNPESQN-TGDKSGVAL-KFLYSLLDLKC 371 (479) Q Consensus 297 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~-~g~~Sg~Ai-~~~~~~l~~k~ 371 (479) ....+....+..++.+..+++++.. .....++..++...+.|...--+..++.+. .|+.+.-|+ +....-....+ T Consensus 252 ~~av~~i~~d~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~a~g~vh~~v~~di~ 331 (526) T protein:vir:99 252 LRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLL 331 (526) T ss_pred HHHHHHHhhCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCcchhhhHHHHHHHHHHHHH Confidence 2334555667788999999999864 455678999999888887654433343321 122111121 11122222334 Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCCCc-cccceeeEEeCCCCCCCHHHHHHHHHHHh--cc-CChHHHHHhCCCCCC Q lcl|Aclame:pro 372 SKTEKKFKKAIR-ELLWFVCEYLKISGNKS-YDYKTVQITFNHSMIINEAEKIDMAAKST--GI-VSDETIVSNHPWVED 446 (479) Q Consensus 372 ~~~~~~~~~~l~-~~~~li~~~~~~~~~~~-~~~~~i~i~f~~~~p~d~~e~a~~~~k~~--g~-is~et~~~~l~~~~d 446 (479) ..-.+.+...+. ++++.++.+ ..... .......+.|....+.|..+.++.+.+++ |+ +|.+.+.++++. .. T Consensus 332 ~aDa~~i~~tln~~Li~~l~~~---N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~Gi-p~ 407 (526) T protein:vir:99 332 ASDARQLAATLSRDLLWPLLVL---NRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQ 407 (526) T ss_pred HHHHHHHHHHHHHHHHHHHHHh---CCCCcCCccccceEEeCCCCcccHHHHHHHHHHHHhCCCccCHHHHHHHhCC-CC Confidence 444455555553 355554443 22221 12234678999999999999999998875 66 899999999875 22 Q ss_pred HH--HHH-HHHHHH--HHHHHhhhh--ccCCCCCCCcCC-C Q lcl|Aclame:pro 447 VN--DEL-ERLKKQ--EDTQKEYDD--LIPNNQDGVIDE-T 479 (479) Q Consensus 447 ~~--~El-~~i~~E--~~~~~~~~~--~~~~~~~~~~de-t 479 (479) +. +++ ...... ..+...... ..........++ + T Consensus 408 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) T protein:vir:99 408 PAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) T ss_pred CCCcccccCCCCCCcccccccccccccccccccccCcchhh Confidence 21 111 100000 000000000 000000000010 1 No 143 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=98.50 E-value=4.3e-07 Score=55.48 Aligned_cols=405 Identities=11% Similarity=0.052 Sum_probs=193.7 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHh-----hHHHHHHHHH-HhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKH-----RPEKYKQGEE-YYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~-yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |.-++..+..-+............+..+......+ -..++....+ .-.|+... +...+ +.... T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~-~~~L~--------~~m~e-- 69 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQA-QAELF--------MDMEE-- 69 (528) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHH-HHHHH--------HHHHh-- Confidence 88888776655544332221111111111111100 0112222222 22221100 00000 00000 Q ss_pred ceeecchHHHHHHHHHhhhhccCeeecCC---c---hhHHHHHHHHHhc--CHHHHHHHHHHHHHhCCeE-EEEEEeCCC Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYSVGNPIVFNAD---D---DNLTKLLNDLLGE--EFDDTITELYLNASNKGVE-WLHPYINRK 145 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l~g~~~~~~~~---~---~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~G~~-~~~v~~d~~ 145 (479) ......-.+.+....+.+.+.++... + ....++++.+..+ +|...+..+ .++..||.+ ++.+|...+ T Consensus 70 ---~D~~i~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~i~~~-lda~~~G~s~~Ei~w~~~~ 145 (528) T protein:vir:10 70 ---RDAHLFAEMSKRKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDLEGIEDLMLDC-MDGVGHGYSAIELDWSLQG 145 (528) T ss_pred ---hChHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCCccHHHHHHHH-HhhhhhcceeEEEEEeecC Confidence 13455667788888888888887642 1 2333445555543 577665555 568889986 455565444 Q ss_pred CceE---EEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccc Q lcl|Aclame:pro 146 GEFK---YVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTD 222 (479) Q Consensus 146 ~~~~---i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 222 (479) |... +.+.+|..+. |++.... . ++. .....+| ..+ . T Consensus 146 g~~~~~~~~~r~~~~f~--~~~~~~~--~--l~~-~~~~~~g-----~~l-~---------------------------- 184 (528) T protein:vir:10 146 REWLPQAFDHRPQSWFQ--LNPDDQD--E--LRL-RDNSIAG-----EVL-Q---------------------------- 184 (528) T ss_pred CceeEEEeeeeccccee--eccCCCc--E--Eec-cCCCCCc-----eee-c---------------------------- Confidence 5433 3334443221 2222111 1 000 0000000 000 0 Q ss_pred ccccccccccccccccccceEEe--cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---- Q lcl|Aclame:pro 223 IQEGHFRINNKEQGWGKVPFIPF--KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---- 296 (479) Q Consensus 223 ~~~~~~~~~~~~~~~g~vPvv~~--~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---- 296 (479) +++.+=.++- ..+..|.|.+..+....--=+..+.+++.-++.++.|+++.+-..+...++ T Consensus 185 -------------~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~a~~~ek~~L 251 (528) T protein:vir:10 185 -------------PFGWIMHKPRSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLPIRLGKYPPGTPDEEKVTL 251 (528) T ss_pred -------------CCCeEEEeecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCCCCCHHHHHHH Confidence 1111111111 124467788887766666666778889999999999999887443333222 Q ss_pred --HHHHhhcccceecCCCCcceeeecC-CCHHHHHHHHHHHHHHHHHHhCCCCCcccc-cccccHHHH-HHHHHHHHHHH Q lcl|Aclame:pro 297 --FIDNIRYYKSIKVDGGGGVDKLEIN-IPVEAKKELLDRLEKNIIIFGQGVNPESQN-TGDKSGVAL-KFLYSLLDLKC 371 (479) Q Consensus 297 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~-~g~~Sg~Ai-~~~~~~l~~k~ 371 (479) ....+....+..++.+..+++++.. .....++.+++...+.|...--+..++... .|..+.-|+ +....-....+ T Consensus 252 ~~al~~i~~~~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~Alg~vh~~v~~di~ 331 (528) T protein:vir:10 252 LRAVTGLGHAAAGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMSKAILGGTLTSQTSESGGGAYALGQVHNEVRHDLL 331 (528) T ss_pred HHHHHHHhhCcEEEecCCceeEEeecCCCChhHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhhHHHHHHHHHHHH Confidence 2334555667778999999999864 556678899998888887655444443322 111111121 11112222233 Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCCCcc-ccceeeEEeCCCCCCCHHHHHHHHHHHh--cc-CChHHHHHhCCCCCC Q lcl|Aclame:pro 372 SKTEKKFKKAIR-ELLWFVCEYLKISGNKSY-DYKTVQITFNHSMIINEAEKIDMAAKST--GI-VSDETIVSNHPWVED 446 (479) Q Consensus 372 ~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~-~~~~i~i~f~~~~p~d~~e~a~~~~k~~--g~-is~et~~~~l~~~~d 446 (479) ..-.+.+...+. ++++-++. ....... ......+.|....+.|..+.++.+.+++ |+ +|.+.+.++++. .. T Consensus 332 ~aDa~~i~~tln~~li~~l~~---~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~gi-p~ 407 (528) T protein:vir:10 332 AADARQLAATLSRDLLWPLLV---LNRSGNLDARRAPRLVFDLKDRADLAAMATSLPPLVKLGVQVPVNWVQEQLGI-PL 407 (528) T ss_pred HHHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEEecCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHhCC-CC Confidence 444455555553 34444443 2222222 2334578899999999999999998875 66 899999999875 22 Q ss_pred HH--HHHHHHHHHHHHHHhh------hhccCC-CCCC---CcCCC Q lcl|Aclame:pro 447 VN--DELERLKKQEDTQKEY------DDLIPN-NQDG---VIDET 479 (479) Q Consensus 447 ~~--~El~~i~~E~~~~~~~------~~~~~~-~~~~---~~det 479 (479) ++ +++..-... ...... ....+. .... ..++. T Consensus 408 p~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (528) T protein:vir:10 408 PANGEAVLGDQAG-AGIAQLSRRPGPRIAALAQVIGPRYRDQEAL 451 (528) T ss_pred CCCCcccccCCCc-ccccccCcccccccccccccccccccccchH Confidence 21 111110000 000000 000000 0000 11111 No 144 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=98.49 E-value=4.7e-07 Score=55.26 Aligned_cols=423 Identities=11% Similarity=0.039 Sum_probs=161.1 Q ss_pred CCcccCcHHHHHHHHh-ccChHHHHHHHHH----HHHHhhHHHHHHHHHHhccCCcccccccccc-------cccccccc Q lcl|Aclame:pro 2 LNIYISETDLIKVQLK-KESTINLVKVIEH----YILKHRPEKYKQGEEYYYGNTDVNNKRRYYL-------LDGAKVDD 69 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~----~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~-------~~~~~~~~ 69 (479) |++. ...-. ..+....++.+.. .+.-..+. ...+.++-.++......+.... .......+ T Consensus 1 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 72 (547) T protein:vir:63 1 MGLF-------ESIRLAGVNKSDAVKHIEVDDNYSIAIQQRE-QEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIRN 72 (547) T ss_pred Cchh-------hhhhhhcCCccccccccccccccchhhhhhh-HHHHHHhhcccchhhhchhhheeecccccccCCccCC Confidence 2222 11110 0000000000000 00000000 0111122111111100000000 00000000 Q ss_pred -cccCc---ceeecchHHHHHHHHHhhhhc-----------cCeee--c-------CCchhHHHHHHHHHh-------c- Q lcl|Aclame:pro 70 -FTKVN---NKAINNYHKLLVDQKVGYSVG-----------NPIVF--N-------ADDDNLTKLLNDLLG-------E- 117 (479) Q Consensus 70 -~~~~~---~ri~~n~~~~iv~~~a~~l~g-----------~~~~~--~-------~~~~~~~~~~~~~~~-------n- 117 (479) .+.+. .-...++...+|+..+..+.+ -++.+ . ..+...-..+..+.. + T Consensus 73 ~~~l~~l~~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~ 152 (547) T protein:vir:63 73 NQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDIN 152 (547) T ss_pred hhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCc Confidence 00000 001234555555555544321 11111 1 111111122222221 1 Q ss_pred --CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEe Q lcl|Aclame:pro 118 --EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYT 194 (479) Q Consensus 118 --~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~ 194 (479) .+..+...+..+.+.+|.+|+.+..+.+|++ .+..++|..+.++.++... .....++++.. .++. ....+. T Consensus 153 ~~s~~~f~~~lv~d~ll~Gn~~~~i~rd~~G~~~~L~~l~p~~V~~~~~~~g~-~~~~~~~y~~~--~~~~---~~~~~~ 226 (547) T protein:vir:63 153 RDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGK-IPDNGNRFVQV--IDQK---IVATFN 226 (547) T ss_pred cchHHHHHHHHHHHHHhhCCEEEEEEECCCCcEEEEEEecCceeEEEECCccc-cccCceEEEEE--cCCc---EEEEec Confidence 2345666788899999999999999988876 4788999999887665421 11111222221 1111 111233 Q ss_pred CCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 195 ENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLAD 274 (479) Q Consensus 195 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~ 274 (479) .+.+.+++... .........|.|.++.+...+.....+..-... T Consensus 227 ~~eiih~r~n~------------------------------------~~~~~~~~~G~Spi~~~~~~i~~~~~a~~~~~~ 270 (547) T protein:vir:63 227 AREMAFAVRNP------------------------------------RSDIYATGYGYPELEIALKQFIAHENTEAFNDR 270 (547) T ss_pred cccEEEecccC------------------------------------CCCcccccccccHHHHHHHHHHHHHHHHHHHHH Confidence 33333332110 000001124778888777777766666555555 Q ss_pred HHHHhccceee--eecCCccchh---hHHHHh--------hcccceecCCCCcceeeecC--CCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 275 NLDEIQEVIYV--LKEYPGTSLQ---EFIDNI--------RYYKSIKVDGGGGVDKLEIN--IPVEAKKELLDRLEKNII 339 (479) Q Consensus 275 ~~~~~~~p~l~--~~g~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~i~ 339 (479) .+...+.|-.+ +++......+ .+...+ ..+++..+. +++++|.... .....+.+..+...+.|. T Consensus 271 ~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~-~~g~~~~~l~~~~~d~qfle~~~~~~~~Ia 349 (547) T protein:vir:63 271 FFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVS-AEDVKFVNMTPSARDMEFEKWLNYLINVIS 349 (547) T ss_pred HHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCccccccccccc-CCCceEEEcCCChhHHHHHHHHHHHHHHHH Confidence 56666666543 3443221211 112111 112222232 2344554444 444556777777888888 Q ss_pred HHhCCCCCccccccccc--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCC Q lcl|Aclame:pro 340 IFGQGVNPESQNTGDKS--GVALKFLYSLLDLKCS-KTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMII 416 (479) Q Consensus 340 ~~s~~~~~~~~~~g~~S--g~Ai~~~~~~l~~k~~-~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~ 416 (479) ..-++|+.-.+..+..+ +..-... ..+.++ .....+...|.-+++.|...+...-..... ..+.+.|...... T Consensus 350 ~afgVPP~~lG~~~~~~~~~~~~~s~---t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~L~~~~~-~~~~~~f~~~~~~ 425 (547) T protein:vir:63 350 ALYGIDPAEINIPNNGGATGSKGGSL---NEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEFG-DKYTFQFVGGDIK 425 (547) T ss_pred HHhCCCHHHcCccccccccccccccc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CceEEEeeccccc Confidence 88788876544221110 0000000 000011 111222333333333333322221111111 2467788877777 Q ss_pred CHHHHHHHHHH-HhccCChHHHHHhCCCC---CCHHH-----HHHHHH----HHH---HHHHhhhh----c------cCC Q lcl|Aclame:pro 417 NEAEKIDMAAK-STGIVSDETIVSNHPWV---EDVND-----ELERLK----KQE---DTQKEYDD----L------IPN 470 (479) Q Consensus 417 d~~e~a~~~~k-~~g~is~et~~~~l~~~---~d~~~-----El~~i~----~E~---~~~~~~~~----~------~~~ 470 (479) +..+.+..... .+|+++.-.++++++.- +.-+. -+..+. .++ +......+ . ... T Consensus 426 ~~~~~~~~~~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (547) T protein:vir:63 426 SELESVKILAEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDV 505 (547) T ss_pred cHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCCccccchhhccccccccCCCCCCCC Confidence 87776664433 36889999998887542 11000 000110 000 00000000 0 000 Q ss_pred CCCC---------CcCCC Q lcl|Aclame:pro 471 NQDG---------VIDET 479 (479) Q Consensus 471 ~~~~---------~~det 479 (479) .+++ ..|.| T Consensus 506 ~~~~~~~~~~~~~~~d~~ 523 (547) T protein:vir:63 506 EDIPDGKDTTGDIGKDGQ 523 (547) T ss_pred CCCCCCcccCCCcCcccc Confidence 0000 00111 No 145 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=98.44 E-value=6.3e-07 Score=54.56 Aligned_cols=405 Identities=12% Similarity=-0.001 Sum_probs=194.0 Q ss_pred CCCcccCcHHHHHHHHhccChHHHH----HHHHHHHHH-hhHHHHHHHHHHhccCCcccccccccccccccccccccCcc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLV----KVIEHYILK-HRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNN 75 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~-~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (479) |+-++..+..-+...........-+ +....+..+ --..++....+--.+..-..+...++ .... T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L~~--------dm~~--- 69 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADLAF--------DMEE--- 69 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHHHH--------HHHh--- Confidence 8888876655554333222211111 111100000 00122222222221111000000000 0000 Q ss_pred eeecchHHHHHHHHHhhhhccCeeecCC---ch---hHHHHHHHHHhc--CHHHHHHHHHHHHHhCCeE-EEEEEeCCCC Q lcl|Aclame:pro 76 KAINNYHKLLVDQKVGYSVGNPIVFNAD---DD---NLTKLLNDLLGE--EFDDTITELYLNASNKGVE-WLHPYINRKG 146 (479) Q Consensus 76 ri~~n~~~~iv~~~a~~l~g~~~~~~~~---~~---~~~~~~~~~~~n--~~~~~~~~~~~~~~~~G~~-~~~v~~d~~~ 146 (479) ......-.+.+....+.+.+.++... +. ...+.++.++.+ +|...+..+. ++.-||.+ ++.+|.-.+| T Consensus 70 --~D~hi~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~ll-dA~~~G~s~~Ei~w~~~~g 146 (512) T protein:vir:19 70 --KDTHLFSELSKRRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDAAWFEDALFDAG-DAILKGYSMQEIEWGWLGK 146 (512) T ss_pred --hChHHHHHHHHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-hhhhhcceeeeeEeeeeCC Confidence 12455566777778888888887532 22 334456666543 5887777764 68889986 4555643344 Q ss_pred ce---EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccc Q lcl|Aclame:pro 147 EF---KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDI 223 (479) Q Consensus 147 ~~---~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (479) .. ++.+.+|..+. |++..... ++. .....+|. .+ T Consensus 147 ~~~~~~~~~r~~~~f~--~~~~~~~~----lr~-~~~~~~G~-----~l------------------------------- 183 (512) T protein:vir:19 147 MRVPVALHHRDPALFC--ANPDNLNE----LRL-RDASYHGL-----EL------------------------------- 183 (512) T ss_pred ceeeeeeeeeccccce--eccCCCcE----EEe-cCCCCCce-----ee------------------------------- Confidence 33 24455554332 23322111 110 00000000 00 Q ss_pred cccccccccccccccccceEEe--cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh----- Q lcl|Aclame:pro 224 QEGHFRINNKEQGWGKVPFIPF--KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE----- 296 (479) Q Consensus 224 ~~~~~~~~~~~~~~g~vPvv~~--~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~----- 296 (479) .+++.+-.++- ..+..|.|.+..+....--=+..+.+++.-++.++.|+++.+-..+...++ T Consensus 184 -----------~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~a~~~ek~~L~ 252 (512) T protein:vir:19 184 -----------QPFGWFMHRAKSRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPMRVGKYPTGSTNREKATLM 252 (512) T ss_pred -----------cCCceEEEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCHHHHHHHH Confidence 11111111111 124568888887766666667778889999999999999887543332222 Q ss_pred -HHHHhhcccceecCCCCcceeeecC-CCHHHHHHHHHHHHHHHHHHhCCCCCcccc--cccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 297 -FIDNIRYYKSIKVDGGGGVDKLEIN-IPVEAKKELLDRLEKNIIIFGQGVNPESQN--TGDKSGVALKFLYSLLDLKCS 372 (479) Q Consensus 297 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~--~g~~Sg~Ai~~~~~~l~~k~~ 372 (479) ....+....+..++.+..+++++.. .....++.+++...+.|...--+..++.+. .|.-+.. +....-....+. T Consensus 253 ~al~~~~~~a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~iLGqtlTs~~g~~Gs~a~~--~vh~ev~~di~~ 330 (512) T protein:vir:19 253 QAVMDIGRRAGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKAILGGTLTTEAGDKGARSLG--EVHDEVRREIRN 330 (512) T ss_pred HHHHHHhhCcEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhHH--HHHHHHHHHHHH Confidence 2334566677788999999999864 445668899998888887654333343332 1211111 111222223334 Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhcCCCccc-cceeeEEeCCCCCCCHHHHHHHHHHH-hcc-CChHHHHHhCCCCCCHH Q lcl|Aclame:pro 373 KTEKKFKKAIR-ELLWFVCEYLKISGNKSYD-YKTVQITFNHSMIINEAEKIDMAAKS-TGI-VSDETIVSNHPWVEDVN 448 (479) Q Consensus 373 ~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~-~~~i~i~f~~~~p~d~~e~a~~~~k~-~g~-is~et~~~~l~~~~d~~ 448 (479) .-.+.+...+. ++++-++. ...+...+ .....+.|....+.|....++.+.++ .|+ +|.+.+.++++. ..++ T Consensus 331 aDa~~i~~tln~~li~~l~~---~N~~~~~~~~~~p~~~f~~~e~eDl~~~a~~~~~l~~G~~i~~~~i~e~~Gi-p~~~ 406 (512) T protein:vir:19 331 ADVGQLARSINRDLIYPLLA---LNSDSTIDINRLPGIVFDTSEAGDITALSDAIPKLAAGMRIPVSWIQEKLHI-PQPV 406 (512) T ss_pred HHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEEecCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHhCC-CCCC Confidence 44455555553 34444443 22222211 23457889999999999999988776 476 888888888874 2221 Q ss_pred HHHHHHHHHHH--HHHh-hhhccCCCCCCCcCCC Q lcl|Aclame:pro 449 DELERLKKQED--TQKE-YDDLIPNNQDGVIDET 479 (479) Q Consensus 449 ~El~~i~~E~~--~~~~-~~~~~~~~~~~~~det 479 (479) .+-.-+..... .... ............+++. T Consensus 407 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (512) T protein:vir:19 407 GDEAVFTIQPVVPDNGSQKEAALSAEDIPQEDDI 440 (512) T ss_pred CccccccCCCccccccccccccccccCCCchhhH Confidence 11000000000 0000 0000000000011111 No 146 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=98.44 E-value=6.4e-07 Score=54.53 Aligned_cols=376 Identities=12% Similarity=0.011 Sum_probs=180.6 Q ss_pred HHHHHHHhhHHHHHHHHHHhc----cCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCC Q lcl|Aclame:pro 28 IEHYILKHRPEKYKQGEEYYY----GNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNAD 103 (479) Q Consensus 28 i~~~~~~~~~~~~~~~~~yy~----g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~ 103 (479) |++..-.+..--.....+++. |-. .++.........+...-... . .......-.+.+....+.+.+.++.+. T Consensus 1 v~~~~l~~e~at~~~~~d~~~~~~~~l~-~~~~~il~~a~~g~~~~y~~--l-~~D~~i~s~l~~rk~av~~~~w~i~p~ 76 (488) T protein:vir:99 1 MEKPALGREIATSGDGRDITRPFISGLQ-VPNDSILQRRGGNDLRVYEE--I-LSDAQVKTVWGQRQLAVVSREWKVEAG 76 (488) T ss_pred CCccchhHHHHHHHhhhhhhccccCCCC-CCChHHHHhhccCCHHHHHH--H-hhChHHHHHHHHHHHHHhcCCceEEcC Confidence 222111111111111223322 211 01111100000000000000 0 113556667888888889999888643 Q ss_pred c--h---hHHHHHHHHHh-cCHHHHHHHHHHHHHhCCeEE-EEEEeCCCCceE---EEEEccceeEEEEcCCCCCceEEE Q lcl|Aclame:pro 104 D--D---NLTKLLNDLLG-EEFDDTITELYLNASNKGVEW-LHPYINRKGEFK---YVIIPAEEAIPIWDSKRQRELVAF 173 (479) Q Consensus 104 ~--~---~~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~~~-~~v~~d~~~~~~---i~~~~p~~~~~~~d~~~~~~~~~~ 173 (479) + + ...+.++.+.+ -+|...+..+. ++..||.++ +.+|...+|... +.+.+|..+. |+.... +. T Consensus 77 ~~~~~~~~~ae~v~~~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~--~d~~~~--l~-- 149 (488) T protein:vir:99 77 GDRPIDQAAAEHLEQQLQRVGWDRVTSKML-FGVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFR--YDQDGG--LR-- 149 (488) T ss_pred CCChHHHHHHHHHHHHHhCCCHHHHHHHHH-hhhhhcceeEEEEEeecCCeeeEeeeeeeccccee--ecCCCc--eE-- Confidence 2 2 23345555544 37888777775 688899864 555654445443 3444444322 333211 10 Q ss_pred EEEEeeec-ccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEe--cCCCC Q lcl|Aclame:pro 174 IRFYYIED-IDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPF--KNNEK 250 (479) Q Consensus 174 i~~~~~~~-~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~--~n~~~ 250 (479) ...... .+| ...+.+++.+-.++. ..+.. T Consensus 150 --~~~~~~~~~g----------------------------------------------~~lp~~~~~i~~~~~~~~g~p~ 181 (488) T protein:vir:99 150 --LLTPNNMFEG----------------------------------------------EPCPAPYFWHFSTGADNDDEPY 181 (488) T ss_pred --EeccCCCCCc----------------------------------------------cccccCceEEEEeecCCCCCcc Confidence 000000 000 011112222211111 12456 Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc-cchhh------HHHHhhcccceecCCCCcceeeecC-C Q lcl|Aclame:pro 251 CVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG-TSLQE------FIDNIRYYKSIKVDGGGGVDKLEIN-I 322 (479) Q Consensus 251 g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~ 322 (479) |.|.+..+....--=+..+.+++.-++.++.|+++.+.... ...++ ....+....+..++.+.++++++.. . T Consensus 182 g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~a~~~ek~~l~~av~~~~~~~~~viP~~~~ie~~ea~~~ 261 (488) T protein:vir:99 182 GLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKTATPEDKAKLLAALHAIQTDSAIIMPAGMQAELLEAGRS 261 (488) T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCCCCHHHHHHHHHHHHHHhcCcEEEecCCceeEEeecCCC Confidence 88888877666555556678888889999999998874321 11111 2344566667788999999999864 4 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCccccc-cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCC Q lcl|Aclame:pro 323 PVEAKKELLDRLEKNIIIFGQGVNPESQNT-GD-KSGVALKFLYSLLDLKCSKTEKKFKKAIR-ELLWFVCEYLKISGNK 399 (479) Q Consensus 323 ~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~-~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~ 399 (479) ....++.+++...+.|...--+..++.+.. |. +.|+. ...-....+..-.+.+...+. ++++.++.+ .. . T Consensus 262 ~~~~~~~li~~~d~~Isk~iLGqtlts~~~~Gs~a~~~v---h~~v~~d~~~aDa~~i~~tln~~li~~l~~~---N~-~ 334 (488) T protein:vir:99 262 GTADYKTLHDTMDATIAKVGLGQVASTQGTPGRLGNDDL---QADVRLDLVKADADLICESFNLGPARWLTEW---NF-P 334 (488) T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---Cc-C Confidence 556688999988888866443333332222 21 12221 112233334445555556663 355544433 21 1 Q ss_pred ccccceeeEEeCCCCCCCHHHHHHHHHHHh---cc-CChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCC Q lcl|Aclame:pro 400 SYDYKTVQITFNHSMIINEAEKIDMAAKST---GI-VSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGV 475 (479) Q Consensus 400 ~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~---g~-is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~ 475 (479) .. ....+.|....+.|..+.++.+.+++ |+ ++.+.+.++++.-. ++.+ ++. ........+...... T Consensus 335 ~~--~~p~~~~~~~e~edl~~~a~~~~~l~~~~G~~i~~~~i~e~~Gip~-~~~~-----~~~--~~~~~~~~~~~~~~~ 404 (488) T protein:vir:99 335 GA--QPPRVYRVIEEPEDITAKAERDEKVFRMSGFRPTRGYVQETYGVEV-ESTQ-----AEA--TAPTPSTEFAEGDQP 404 (488) T ss_pred Cc--CCceeEecCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHcCCCC-cccc-----ccc--ccCCCcccCCCCCCC Confidence 11 22467788888899999999888863 66 88888888876432 1110 000 000000000000000 Q ss_pred cCCC Q lcl|Aclame:pro 476 IDET 479 (479) Q Consensus 476 ~det 479 (479) .+.. T Consensus 405 ~~~~ 408 (488) T protein:vir:99 405 SDPA 408 (488) T ss_pred CCch Confidence 1110 No 147 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=98.42 E-value=7.3e-07 Score=54.24 Aligned_cols=417 Identities=13% Similarity=0.053 Sum_probs=165.7 Q ss_pred CCCcc-----------------------------------cCcHHHHHHHHhccChHHHHH--HHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 1 MLNIY-----------------------------------ISETDLIKVQLKKESTINLVK--VIEHYILKHRPEKYKQG 43 (479) Q Consensus 1 ~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~ 43 (479) .+|+- .-|+...-..+.......+.+ .|.....+++.++.-.. T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~i~~pfkkk~~~~~~d~ 91 (945) T protein:vir:10 12 IVNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNL 91 (945) T ss_pred eeccccccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeehhhhHHHhhcccccccccccchhhhh Confidence 11111 112111111111111111100 01111111111111111 Q ss_pred HHHhccCCccccccccccccccccccc----ccCcceeecchHHHHHHHHHhhhhccCeeec--CCch----------hH Q lcl|Aclame:pro 44 EEYYYGNTDVNNKRRYYLLDGAKVDDF----TKVNNKAINNYHKLLVDQKVGYSVGNPIVFN--ADDD----------NL 107 (479) Q Consensus 44 ~~yy~g~~~~~~~~~~~~~~~~~~~~~----~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~--~~~~----------~~ 107 (479) .. +.+... ............ ...+......-....|+.+++-+.+-|+++- .++. .. T Consensus 92 f~-~s~es~------s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIAsLPlklYrr~edG~~~~~~kk~~~~ 164 (945) T protein:vir:10 92 FE-YSPESL------MYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDA 164 (945) T ss_pred hh-ccCccc------eecccccCccceeeehhhhhhhhccHHHHHHHHHHHhhhccCceEEEEecccCcccccccccccc Confidence 11 112110 000000000000 0001111223345567788888888887641 1111 11 Q ss_pred HHHHHHHHh-cC-H------HHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEe Q lcl|Aclame:pro 108 TKLLNDLLG-EE-F------DDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYY 178 (479) Q Consensus 108 ~~~~~~~~~-n~-~------~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~ 178 (479) ..+...+.. |. + ..+...+..+.+.+|.+|+.+..+.+|++ .+..++|..+.+..++... .. ++. T Consensus 165 hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G~ii~L~pLdPs~Vti~~ddDG~--~~----y~Y 238 (945) T protein:vir:10 165 RNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTG--IV----VGY 238 (945) T ss_pred hHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCCc--EE----EEE Confidence 112222221 32 1 12445677899999999999999988987 5889999999887665422 11 111 Q ss_pred eecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHH Q lcl|Aclame:pro 179 IEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFY 258 (479) Q Consensus 179 ~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v 258 (479) ....++.. ...+.+..+.++... +++.|. ....|.|.++.+ T Consensus 239 v~~idG~~---~~~v~a~DvIlhirn-----------------------------~s~DG~-------~~GyGlSPIeaa 279 (945) T protein:vir:10 239 VQEVDGAI---VAHFDKRDVVLFRQN-----------------------------LTPDVY-------MYGYSLPPIEIL 279 (945) T ss_pred EEecCCce---EEEecCCceEEEecc-----------------------------CCCCcc-------cccCCchHHHHH Confidence 11122221 112223222221110 000000 011355555555 Q ss_pred HHHHHHHHHHHHHHHHHHH-Hhccce--eeeecCC-------ccchhh----HHHHh-------hcccceecCCCCccee Q lcl|Aclame:pro 259 KSLIDIYDNNISTLADNLD-EIQEVI--YVLKEYP-------GTSLQE----FIDNI-------RYYKSIKVDGGGGVDK 317 (479) Q Consensus 259 ~~lid~~~~~~s~~~~~~~-~~~~p~--l~~~g~~-------~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~ 317 (479) ...+...........+.+. -.+.|- +.+++.. +...++ +...+ ..+..+.++++.+++. T Consensus 280 ~~aI~~alAaek~aar~FskNGa~PsGILsvkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLdeGmef~p 359 (945) T protein:vir:10 280 YKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWID 359 (945) T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccceEEEecCccccccccccccCHHHHHHHHHHHHHHhCCcccccceecCCCceEEE Confidence 4444433332222233332 234553 3333321 111111 11111 1123344555555555 Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 318 LEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG 397 (479) Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~ 397 (479) ++.+.....+.+..+.....|...-++|+.-.+.....++..++....... ...|.-.++.+...+...- T Consensus 360 Ls~s~~DaQfLEsrkfs~eeIArAFGVPP~lLG~~e~st~SNiEqq~~~Fv----------~~tL~Pil~~IEqeLNrkL 429 (945) T protein:vir:10 360 FKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTK----------AKGLEPLMATISKGFDEVV 429 (945) T ss_pred ccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCcchHHHHHHHHH----------HHHHHHHHHHHHHHHHHhc Confidence 555555566777788888888888888876554332222222222211121 1222222222222111110 Q ss_pred CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHHHH---HHHH-HHHH--H----H-H Q lcl|Aclame:pro 398 NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVNDEL---ERLK-KQED--T----Q-K 462 (479) Q Consensus 398 ~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~El---~~i~-~E~~--~----~-~ 462 (479) ........+.+.|+.....+..+.++++.++ .|+++.-.++++++.-. +-+.-+ ..+. .+.. + . . T Consensus 430 l~~~eg~~i~fdFd~ldl~D~ksraEal~kli~sGiLTiNEvRe~lGLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~p~ 509 (945) T protein:vir:10 430 SEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPP 509 (945) T ss_pred cccccCceeEEEecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccccCCCCc Confidence 0111234567888777777888889888875 58999999988875321 101100 0000 0000 0 0 0 Q ss_pred hhh---hccCCCCCCCcCCC Q lcl|Aclame:pro 463 EYD---DLIPNNQDGVIDET 479 (479) Q Consensus 463 ~~~---~~~~~~~~~~~det 479 (479) ... ...+...+|+.||. T Consensus 510 q~aq~~~dqp~~kGGe~dEn 529 (945) T protein:vir:10 510 QLAQAMADQPSQQGGGVDEN 529 (945) T ss_pred ccccCCCCCCCCCCCCCCCC Confidence 000 01111111222222 No 148 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=98.40 E-value=8.2e-07 Score=53.95 Aligned_cols=383 Identities=11% Similarity=-0.036 Sum_probs=179.0 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQ 88 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~ 88 (479) |..+...+.+.+.... .....+.+.+.+....... .... +..-+..+-....|+. T Consensus 1 Mg~f~~lf~r~~~~~~-------------~~~~~~~~~~~~~~~~~~g---------~~v~---~~~al~~~~v~~~i~~ 55 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPV-------------TTPAELADAIGLSYDTYTG---------KQIS---SQRAMRLTAVFSCVRV 55 (414) T ss_pred CchhhhhhccCccCcc-------------cchhhHhHhhccCccccCC---------ceec---hhhhhccHHHHHHHHH Confidence 3333322222111100 0001111122111100000 0000 0000122334556777 Q ss_pred HHhhhhccCeeec---CCc--hh-HHHHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccc Q lcl|Aclame:pro 89 KVGYSVGNPIVFN---ADD--DN-LTKLLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAE 156 (479) Q Consensus 89 ~a~~l~g~~~~~~---~~~--~~-~~~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~ 156 (479) +|+-+.+-|+.+- .+. .. ...+...+. -| ....+...+....+.+|.+|+++..+ .|++ .+..++|. T Consensus 56 Ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~-~g~~~~L~~l~~~ 134 (414) T protein:vir:44 56 LAESVGMLPCNLYHLNGSLKQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA-FGEVAELLPVDPG 134 (414) T ss_pred HHHHhccCceEEEEecCCceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCc Confidence 7777777777642 111 11 111222221 12 34456677888899999999998766 5766 58889999 Q ss_pred eeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccccc Q lcl|Aclame:pro 157 EAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQG 236 (479) Q Consensus 157 ~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (479) .+.+.++... .+. |.....+|. ...+.++.+.+++.- . T Consensus 135 ~v~~~~~~~~--~~~-----y~~~~~~g~----~~~~~~~evih~~~~-------------------------------~ 172 (414) T protein:vir:44 135 CVVPKLNSSW--EPV-----YQVTFPDGS----TDVLSQEDIWHVRTL-------------------------------T 172 (414) T ss_pred eEEEEECCCC--cEE-----EEEEecCce----EEEEccccEEEecCC-------------------------------C Confidence 9988877542 221 222222332 122334444443210 0 Q ss_pred ccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---HHHHh--------hccc Q lcl|Aclame:pro 237 WGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---FIDNI--------RYYK 305 (479) Q Consensus 237 ~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---~~~~~--------~~~~ 305 (479) .+...|.|.+..+...++..........+.+...+.|-.++........+. ....+ ..++ T Consensus 173 ---------~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~ 243 (414) T protein:vir:44 173 ---------LDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTLSDQAYERLKKDFEERHTGLGNAHR 243 (414) T ss_pred ---------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHHHHHHHHHHHhcCccccCc Confidence 012347787877777777666665556666666677766655432222111 11111 1133 Q ss_pred ceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 306 SIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIREL 385 (479) Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~ 385 (479) ++.++++.+.+.+..+.....+.+..+.....|+..-++|+.-.+..+..+...++... ...+...|.-. T Consensus 244 ~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~~n~e~~~----------~~~~~~~l~P~ 313 (414) T protein:vir:44 244 PMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELG----------LGFINYSLVPY 313 (414) T ss_pred ceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHH----------HHHHHHHHHHH Confidence 55566555555555444444566777777788888778776544433222222221111 11223333333 Q ss_pred HHHHHHHHHhcC--CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHHHHHHHHHHHH Q lcl|Aclame:pro 386 LWFVCEYLKISG--NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVNDELERLKKQED 459 (479) Q Consensus 386 ~~li~~~~~~~~--~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~El~~i~~E~~ 459 (479) ++.|...+...- ........+++.+...+..|..+.++++.++ +|+++.-.++++++.-. .-+.-+....-. . T Consensus 314 ~~~ie~~ln~~L~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~-~ 392 (414) T protein:vir:44 314 LTRIEQRINTGLVRKSKQGVFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMT-T 392 (414) T ss_pred HHHHHHHHHhhcCCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeccccccc-c Confidence 333333222211 1111122345555666678899999999886 57999999998876422 111111000000 0 Q ss_pred HHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 460 TQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 460 ~~~~~~~~~~~~~~~~~det 479 (479) ......+.....+++.+|+| T Consensus 393 ~~~~~~~~~~~~~~~~~d~~ 412 (414) T protein:vir:44 393 KPSDGSKAGKQKDNANADET 412 (414) T ss_pred cCCccccCCCCCCCCCCCCC Confidence 00111122233445556666 No 149 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=98.39 E-value=8.7e-07 Score=53.80 Aligned_cols=379 Identities=11% Similarity=0.011 Sum_probs=175.1 Q ss_pred HHHHHHHHHHhccCCcccccccccccc-cccccccccCcceeecchHHHHHHHHHhhhhccCeeec---CCc--h-hHHH Q lcl|Aclame:pro 37 PEKYKQGEEYYYGNTDVNNKRRYYLLD-GAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFN---ADD--D-NLTK 109 (479) Q Consensus 37 ~~~~~~~~~yy~g~~~~~~~~~~~~~~-~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~---~~~--~-~~~~ 109 (479) ....+++...++.+.+........... .+. ....+..-+..+-....|+.+++-+.+-|+++- .+. + .... T Consensus 1 MG~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~ 78 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNETVDMTNPLLLQWLGV--DPDTPRNQLSEATYFACLKILSESLGKLPLKMYQKTERGIVKSDREE 78 (411) T ss_pred CchHHHHHhhccCcccccccchHHHHHHhcC--cccChhhhhccHHHHHHHHHHHHhHhhCceeEEEecCCceeeecccH Confidence 111222222222211110000000000 000 000011112223344567777777777787651 111 1 1112 Q ss_pred HHHHHHh--c---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeec-c Q lcl|Aclame:pro 110 LLNDLLG--E---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIED-I 182 (479) Q Consensus 110 ~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~-~ 182 (479) +...+.. | ....+...++...+.+|.+|+.+..+ .|++ .+..++|..+.++.++........ ..+|.... . T Consensus 79 l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~-~g~~~~l~~l~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (411) T protein:vir:81 79 LYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS-GPQLQALWILPSQYVTIVVDDRGLLGEKN-AIWYRYNDPY 156 (411) T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCceEEEEEECCceEEEEEcCcccccccc-eEEEEEEecC Confidence 2333321 3 23456677888899999999998887 4555 578899999998887643211111 11112111 1 Q ss_pred cCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHH Q lcl|Aclame:pro 183 DGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLI 262 (479) Q Consensus 183 ~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~li 262 (479) +|.. ..+..+.+.+++.. ++ .+...|.|.+..+...+ T Consensus 157 ~g~~----~~~~~~eiih~k~~------------------------------~~---------~~~~~G~s~~~~~~~~i 193 (411) T protein:vir:81 157 DGKM----YVFRNDEILHFKTS------------------------------VT---------FDGITGLSVRDVLKHTV 193 (411) T ss_pred CceE----EEEccccEEEEcCC------------------------------CC---------CCCcccccHHHHHHHHH Confidence 1111 11333333333110 00 01235778777777777 Q ss_pred HHHHHHHHHHHHHHHHhccceeeeecCCccchhh---HHHHh--------hcccceecCCCCcceeeecCCCHHHHHHHH Q lcl|Aclame:pro 263 DIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---FIDNI--------RYYKSIKVDGGGGVDKLEINIPVEAKKELL 331 (479) Q Consensus 263 d~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (479) +.......-..+.+...+.|-.+++.......+. ....+ ..++++.++++.+.+.+..+.....+.+.. T Consensus 194 ~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~ 273 (411) T protein:vir:81 194 DGALESQKFMNNLYKTGLTGKAVLEYTGDLNQEARDRLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELK 273 (411) T ss_pred HHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCCHHHHHHHHHH Confidence 7776666666666667777777665432222111 11111 123455566666665555444445566777 Q ss_pred HHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cccceeeE Q lcl|Aclame:pro 332 DRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKS---YDYKTVQI 408 (479) Q Consensus 332 ~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~---~~~~~i~i 408 (479) +.....|...-+.|+.-.+.....+-..++.. ....+...|.-.+..+...+...--.. .....+++ T Consensus 274 ~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~----------~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~~f 343 (411) T protein:vir:81 274 KYTALQIAAAFGIKPNQINDYEKSSYASAEAQ----------NLAFYVDTLLYVLKQYEEEITYKILSNDLISQGHYFKF 343 (411) T ss_pred HHHHHHHHHHhCCCHHHhCCCCCCCchhHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcCChhhcCCCcEEEe Confidence 78888888888888665543322221111111 112233334444433333332211000 11123555 Q ss_pred EeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCH--HHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 409 TFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDV--NDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 409 ~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~--~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) .+...+..|..+.++++.++ .|+++.-.++++++.-..+ +.-+ +... ..+.+. .. .+.+.+.|+ T Consensus 344 d~~~ll~~d~~~~~~~~~~~~~~g~~t~NE~R~~~gl~p~~ggD~~~--~~~n---~~pl~~-~~-~~~~kgGd~ 411 (411) T protein:vir:81 344 NVNVILRADIKTQMDSLSTAVQNGIMTPNEARDYLDMPADDYGNNLM--ANGN---YIPLSM-LG-ANYGKGGDS 411 (411) T ss_pred echhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeee--eccC---ccchhh-hh-hhhccCCCC Confidence 56666778999999998886 5799999998887653211 1100 0000 000000 00 111223333 No 150 >protein:vir:99672 Length: 532 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249587;genbank:gi:68299738;genbank:GeneID:3799987 Probab=98.39 E-value=9.1e-07 Score=53.71 Aligned_cols=442 Identities=10% Similarity=-0.001 Sum_probs=191.6 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHH Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLV 86 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 86 (479) |..+.. .......+.+..+.+ ..+|.......+++++ +-.|++-. .+ .....+...++.-+.+...+ T Consensus 1 m~~~~~----~~~~~~~~~~r~~~l-~~~R~~~e~~w~e~~~--~~lP~~~~---~~---~~~~~~~~~~~~dst~~~a~ 67 (532) T protein:vir:99 1 MAEVEK----TGFAADGAAAAYNRL-KNDRGAYETRAEDCAT--YTIPSVFP---SA---TADGSTSYTTPWQSIGARGL 67 (532) T ss_pred Ccchhh----ccccHHHHHHHHHHH-HHHhhHHHHHHHHHHH--HhhhcccC---CC---CCcchhhccccccchHHHHH Confidence 332221 112223344444433 3334333333333433 11121100 00 01112233455567777778 Q ss_pred HHHHhhhhcc------C-eeecCCchh-------------HHHHH--------HHHHhcCHHHHHHHHHHHHHhCCeEEE Q lcl|Aclame:pro 87 DQKVGYSVGN------P-IVFNADDDN-------------LTKLL--------NDLLGEEFDDTITELYLNASNKGVEWL 138 (479) Q Consensus 87 ~~~a~~l~g~------~-~~~~~~~~~-------------~~~~~--------~~~~~n~~~~~~~~~~~~~~~~G~~~~ 138 (479) +.+|+.|++- | +++...+.. +...+ ..+..++|.....++.++..++|.+++ T Consensus 68 ~~LAa~L~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l 147 (532) T protein:vir:99 68 NNLASKLMLALFPVGSSFFKLNVSELEVKQSITSPEELTEIATGLAMVERICMNYMESNSFRPTLHAAIKQLLVAGNVLL 147 (532) T ss_pred HHHHHHHHHhhcCCCCccccccCCHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeE Confidence 8888777543 2 223322211 22222 334457899999999999999999999 Q ss_pred EEEeCCC---CceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecc---------------cCceEEEEEEEeCCcEEE Q lcl|Aclame:pro 139 HPYINRK---GEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDI---------------DGNKIKRVEYYTENDITY 200 (479) Q Consensus 139 ~v~~d~~---~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~y~~~~i~~ 200 (479) ++..++. ...+++.++-.++++--|. ..++..+++..+.... +++....+++|+.- + T Consensus 148 ~~~~~~~~~~~~~~f~~~pl~~y~v~~d~--~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~p~~~v~v~~~v---~ 222 (532) T protein:vir:99 148 YIPSTEQVEGQSNAPKLYKLHNFVVERDA--YDNVLQIVTEDKIARAALPEDVRKSLEDAQGDQNPSEEVTIYTHV---Y 222 (532) T ss_pred EecccccccCcccceEEEEcCeEEEeeCC--CCCeeeEeeeeeecHHhcChHHHHHhhccccccCCCcceEEEEEE---E Confidence 8866532 3456777777665543333 3456566655444210 11222234444311 0 Q ss_pred EEEcCCccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 201 FIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADN 275 (479) Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~ 275 (479) ....+..+. . ................++..+|++.+. ++.+|+|-.++..+-+..+|...-..... T Consensus 223 ~~~~~~~~~--~-------~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~ 293 (532) T protein:vir:99 223 RDPEAMVFR--S-------YQEIDGEIVAGTEGEYPLDSCPWIPVRLIKMPNEDYGRSFVEEYLGDLKSLENLYEAIVKM 293 (532) T ss_pred ecCCCCeeE--E-------EEeecCceecccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHH Confidence 011110000 0 000011011111222345667777654 34689999999999999999887777777 Q ss_pred HHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeeec--CCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc Q lcl|Aclame:pro 276 LDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEI--NIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG 353 (479) Q Consensus 276 ~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g 353 (479) ......|.+.+.-.+...... ......+ .+.....+++..+.. ..+.......++.++..|...-....+..-+.. T Consensus 294 ~~~a~~~~~lv~p~g~~~~~~-~~~~~~g-~~v~g~~~~i~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~~~d~~ 371 (532) T protein:vir:99 294 SMISSKVLFFVNPNGVTQIRR-VAKANTG-DFVAGRKQDVEVFQLEKYNDFQVAKATADDIEKRLSYAFMLNSAVQRGGD 371 (532) T ss_pred HHHHcCCCceeccccccchhh-hccCCCc-ceecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhcccCCCC Confidence 777777776553211111111 1111122 233333445555543 345666677777777777553332222222334 Q ss_pred cccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCc---cccceee-EEeCCCCCCCHHHHHHHH--- Q lcl|Aclame:pro 354 DKSGVALKFLYSLLDLKCSK-TEKKFKKAIRELLWFVCEYLKISGNKS---YDYKTVQ-ITFNHSMIINEAEKIDMA--- 425 (479) Q Consensus 354 ~~Sg~Ai~~~~~~l~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~~---~~~~~i~-i~f~~~~p~d~~e~a~~~--- 425 (479) ..||+.+..+.........- ..+.-.+.+.-+++-.+.++...+..+ .+...+. +++-.++-+ ++.++.+ T Consensus 372 r~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~iv~~is~Lar--aq~~~~l~~~ 449 (532) T protein:vir:99 372 RVTAEEIRYVAGELEDTLGGVYSLLSQELQLPLVKILLKELQATSKIPNLPKEAVEPAIATGLEALGR--GHDLNKLNVF 449 (532) T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhcccceeecchHHHH--HHHHHHHHHH Confidence 46888876644433333321 111112222222222233333333321 1222222 222222222 2222222 Q ss_pred -HHHhcc-------CChHHHHH----hCCC-CC---CHHHHHHHHHHHHHHHH-hhh--hc---------cCCCCCCCcC Q lcl|Aclame:pro 426 -AKSTGI-------VSDETIVS----NHPW-VE---DVNDELERLKKQEDTQK-EYD--DL---------IPNNQDGVID 477 (479) Q Consensus 426 -~k~~g~-------is~et~~~----~l~~-~~---d~~~El~~i~~E~~~~~-~~~--~~---------~~~~~~~~~d 477 (479) +.++.+ +....+++ .+|. .. -.++|++.+.++++.+. ... .. ......+.+= T Consensus 450 ~~~laq~~p~~~d~id~d~~~~~~a~~~GV~~~~i~r~~ee~~~~~~q~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 529 (532) T protein:vir:99 450 IDYMIKLAGLQDDDINLLDVKMRLANSLGMDTTGLILTQQDKQAKMAEASTAAGMVTAGQQMGAAGGQAAAAMMQQQAGM 529 (532) T ss_pred HHHHHhhcchhhhhCCHHHHHHHHHHHhCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHhhcCC Confidence 222222 22333332 2332 11 23455555544332111 110 00 0111112222 Q ss_pred CC Q lcl|Aclame:pro 478 ET 479 (479) Q Consensus 478 et 479 (479) +| T Consensus 530 ~~ 531 (532) T protein:vir:99 530 PT 531 (532) T ss_pred CC Confidence 33 No 151 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=98.39 E-value=9.1e-07 Score=53.70 Aligned_cols=428 Identities=11% Similarity=0.031 Sum_probs=173.5 Q ss_pred CCCcccCcHHHHHHHH-hccChHHHHHHHHH----HHHHhhHHHHHHHHHHhccCCcccccccccccccc---ccccccc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQL-KKESTINLVKVIEH----YILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGA---KVDDFTK 72 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~----~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~---~~~~~~~ 72 (479) |- ..|..++..- ..-+....+..+.. .+....+ .-+.+.++-.|+......+........ ...+..+ T Consensus 1 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~a~~~~~~~~~~~~~~~~~r~~~~ 75 (551) T protein:vir:80 1 MK----NKLGLFESIRLVGVNKSDAVKHIEVDDNYSIAIQQR-EQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIR 75 (551) T ss_pred Cc----hhhhhHHHhhhccCChhhcccccccccceeeecccc-cHHHHHHhhccCcceeecccccceecCcccccCcccc Confidence 21 1233332211 12223333333221 0111111 123344555554433211111000000 0000000 Q ss_pred C-----cc--e-eecchHHHHHHHHHhhhhc-----------cCeeecCC---------chhHHHHHHHHHh--c----- Q lcl|Aclame:pro 73 V-----NN--K-AINNYHKLLVDQKVGYSVG-----------NPIVFNAD---------DDNLTKLLNDLLG--E----- 117 (479) Q Consensus 73 ~-----~~--r-i~~n~~~~iv~~~a~~l~g-----------~~~~~~~~---------~~~~~~~~~~~~~--n----- 117 (479) + .. . ...++.+.+|+..+..+.. -|+.+..- +......+..+.. | T Consensus 76 ~~~~l~~~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p 155 (551) T protein:vir:80 76 NNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDI 155 (551) T ss_pred ChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCC Confidence 0 00 0 1135555666666654431 22222111 1111112222221 1 Q ss_pred ---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCceE-EEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEE Q lcl|Aclame:pro 118 ---EFDDTITELYLNASNKGVEWLHPYINRKGEFK-YVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYY 193 (479) Q Consensus 118 ---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~-i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y 193 (479) .+..+...+..+.+.+|.+|+.+..+.+|+|. +..++|..+.++.++... .....++++.. .++. ....| T Consensus 156 ~~~s~~~f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g~-~~~~~~~y~~~--~~g~---~~~~~ 229 (551) T protein:vir:80 156 NRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGK-IPDNGNRFVQV--IDQK---IVATF 229 (551) T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCccc-cccCceEEEEE--eCCc---EEEEE Confidence 23456667788899999999999999899874 888999999887665431 11111222221 1121 11123 Q ss_pred eCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 194 TENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLA 273 (479) Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~ 273 (479) ..+.+.+++... ..+. .....|.|.++.+...+........... T Consensus 230 ~~~eiiH~~~n~---------------------------~~~~---------~~~~~G~spi~~a~~~i~~~~a~~~~~~ 273 (551) T protein:vir:80 230 NAREMAFAVRNP---------------------------RSDI---------YATGYGYPELEIALKQFIAHENTEAFND 273 (551) T ss_pred cccceEEecccC---------------------------CCCc---------ccccccccHHHHHHHHHHHHHHHHHHHH Confidence 333444332110 0000 0112477878777777776666655555 Q ss_pred HHHHHhccceeee--ecCCccchh---hHHHHh--------hcccceec-CCCCcceeeecCCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 274 DNLDEIQEVIYVL--KEYPGTSLQ---EFIDNI--------RYYKSIKV-DGGGGVDKLEINIPVEAKKELLDRLEKNII 339 (479) Q Consensus 274 ~~~~~~~~p~l~~--~g~~~~~~~---~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 339 (479) +.+...+.|-.++ ++......+ .+...+ ..+++..+ .++.+.+.+..+.....+.+..+...+.|. T Consensus 274 ~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia 353 (551) T protein:vir:80 274 RFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVIS 353 (551) T ss_pred HHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCccccccCCCceEEEccCChhHHHHHHHHHHHHHHHH Confidence 6666666676443 443222211 111111 11222223 233344444434444557777888888888 Q ss_pred HHhCCCCCccccccccc--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCC Q lcl|Aclame:pro 340 IFGQGVNPESQNTGDKS--GVALKFLYSLLDLKCS-KTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMII 416 (479) Q Consensus 340 ~~s~~~~~~~~~~g~~S--g~Ai~~~~~~l~~k~~-~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~ 416 (479) ..-++|+.-.+..+..+ |...... ..+.++ .....+...|.-+++.+...+...-.... ...+.+.|...... T Consensus 354 ~aFgVPp~~lG~~~~~~~~~~~~~s~---t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~L~~~~-~~~~~f~f~~~~~~ 429 (551) T protein:vir:80 354 ALYGIDPAEINIPNNGGATGSKGGSL---NEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEF-GDKYTFQFVGGDIK 429 (551) T ss_pred HHhcCCHHHcCccccccccccccccc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-CCceEEEeeccChh Confidence 88888876544221110 0000000 000011 11122222333333322222221111111 13467788877777 Q ss_pred CHHHHHHHHHH-HhccCChHHHHHhCCCCC---CHHHH-----HH---------HHHHHHHHHH--hhhhccC------C Q lcl|Aclame:pro 417 NEAEKIDMAAK-STGIVSDETIVSNHPWVE---DVNDE-----LE---------RLKKQEDTQK--EYDDLIP------N 470 (479) Q Consensus 417 d~~e~a~~~~k-~~g~is~et~~~~l~~~~---d~~~E-----l~---------~i~~E~~~~~--~~~~~~~------~ 470 (479) +..+.+..... ..|+++.-.++++++.-. .-+.- +. ....+++... ...+... . T Consensus 430 ~~~~~~~~~~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (551) T protein:vir:80 430 SELESVKILAEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDV 509 (551) T ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCcchhhhhhccccccCcCCCCCCCCC Confidence 77776665433 358899999988875421 10000 00 0011111000 0000000 0 Q ss_pred CCCCCcCCC Q lcl|Aclame:pro 471 NQDGVIDET 479 (479) Q Consensus 471 ~~~~~~det 479 (479) .+++.+-|+ T Consensus 510 ~~~p~~~~~ 518 (551) T protein:vir:80 510 EDIPDGKDT 518 (551) T ss_pred CCCCCcccc Confidence 000011011 No 152 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=98.37 E-value=9.8e-07 Score=53.53 Aligned_cols=391 Identities=11% Similarity=-0.002 Sum_probs=154.3 Q ss_pred ChHHHHHHHHHHHHHhhHHHHHH-HHHHhcc---CCccccccccccc--ccccccccccCcceeecchHHHHHHHHHhhh Q lcl|Aclame:pro 20 STINLVKVIEHYILKHRPEKYKQ-GEEYYYG---NTDVNNKRRYYLL--DGAKVDDFTKVNNKAINNYHKLLVDQKVGYS 93 (479) Q Consensus 20 ~~~~~~~~i~~~~~~~~~~~~~~-~~~yy~g---~~~~~~~~~~~~~--~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l 93 (479) -+..+.=.++|.+.+.+..+... +...-.| +++-.+....+.. ........ +| ...+++.||+.+++-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd~l~~~~~glg~~r~~~~~~~g~~~~~~~~~l~~~----Yr-~~~ia~~iVd~~~d~~ 75 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSL----YR-RGGIAHGAVEKLVGKC 75 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHHHHHHHHhcCCcccchhhhhcCCcccCCHHHHHHH----Hh-cCchhHHHHHhhhhhh Confidence 11223344555555554433221 1111111 1111111100000 00000001 11 2345788999999987 Q ss_pred hccCeee-cCCchh-------HHHHHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCC Q lcl|Aclame:pro 94 VGNPIVF-NADDDN-------LTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSK 165 (479) Q Consensus 94 ~g~~~~~-~~~~~~-------~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~ 165 (479) ..+.+.+ .+++.+ ....++.+..+++...+.++.+.+..||.+++++..+ +|+..-..+.+. T Consensus 76 ~~~~~~i~~g~~~~~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~~rl~Gga~i~i~v~-d~~~l~~Pl~~~--------- 145 (449) T protein:vir:10 76 WQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKG--------- 145 (449) T ss_pred hhcCcccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEEEec-CCCCCCcccccC--------- Confidence 6554444 332211 1222333444566667778888888899888877664 343321111111 Q ss_pred CCCceEEEEEEEee----ecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 166 RQRELVAFIRFYYI----EDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVP 241 (479) Q Consensus 166 ~~~~~~~~i~~~~~----~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vP 241 (479) ..+..+.-+|.. ...+.+ ...-.++-|. .|++.....+ . .......|.--.+. T Consensus 146 --~~i~~i~v~~~~~i~~~~~~~d-p~sp~yg~P~-~y~v~~~~~g---------------~----~~~~~~iH~SRl~~ 202 (449) T protein:vir:10 146 --RGLQKVSVSWAGSLKVAEWDTG-INSKTYGQPK-LWKYTERLPN---------------G----SSRRVDIHPDRVFI 202 (449) T ss_pred --cceeeEEeeccccCChhhhhcC-CCCCCCCCce-EEEEeeeccC---------------C----CccceeeccceeEe Confidence 111111111110 000000 0000111111 1111110000 0 00011122222222 Q ss_pred eEEecCCCCCCchHHHHHHHHHHHHHHHHH-----HHHHHHHhccc----e-----eeeecCCccchhh-H---HHHhhc Q lcl|Aclame:pro 242 FIPFKNNEKCVSDLTFYKSLIDIYDNNIST-----LADNLDEIQEV----I-----YVLKEYPGTSLQE-F---IDNIRY 303 (479) Q Consensus 242 vv~~~n~~~g~s~~~~v~~lid~~~~~~s~-----~~~~~~~~~~p----~-----l~~~g~~~~~~~~-~---~~~~~~ 303 (479) +... ...|.|.++.+-.-+-.++.+.-. +.+..+..... + .-..+.+.+...+ + ...+.. T Consensus 203 ~~~~--~~~g~~~L~~~yn~l~~~~~~~~~~a~~~l~~~~rq~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~ 280 (449) T protein:vir:10 203 LGDY--SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINR 280 (449) T ss_pred ecCC--CCCChhHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHHhhCCchHHHHHHHHHHHHHhc Confidence 2111 123556555543322222222111 11111111100 0 0011111111111 1 111111 Q ss_pred -ccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc---c-cccHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 -YKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT---G-DKSGVALKFLYSLLDLKCSKTEKKF 378 (479) Q Consensus 304 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~---g-~~Sg~Ai~~~~~~l~~k~~~~~~~~ 378 (479) ...+.++++.+ +-+.+.+..+....++...+.+...+..|-.-..+. | |.+++ ++. -+..+..++..+ T Consensus 281 ~~~~~~i~~~~d--~~~~~~~~sgl~d~l~~~~q~iaaa~~IP~t~L~Gqsp~glnst~D-~~n----yyd~i~~~Q~~l 353 (449) T protein:vir:10 281 GNDVLMTTQGAT--VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-QKY----FNARCQSRRVDL 353 (449) T ss_pred cchheeecCCcc--eEEEecccCChhHHHHHHHHHHHHHhCCCeeeeeccCccccccchh-HHH----HHHHHHHHHHhh Confidence 11233444444 444555666777788888888877777774432222 2 22332 332 333344455568 Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhc------------cCChHHHHHhCCCCCC Q lcl|Aclame:pro 379 KKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTG------------IVSDETIVSNHPWVED 446 (479) Q Consensus 379 ~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g------------~is~et~~~~l~~~~d 446 (479) +..|++++++++... .+. .+ .+++|.|+|-...+..|.|+...+.+. +++.+.+...+++.. T Consensus 354 ~p~le~l~~~l~~s~--~g~--~~-~d~~i~f~pL~~~t~kEkAei~k~~A~a~~~~~~ag~~~~~~~~EiR~~~~~~~- 427 (449) T protein:vir:10 354 SFEIEDFCDKLIELK--IID--AV-AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDN- 427 (449) T ss_pred hHHHHHHHHHHHHhh--cCC--CC-CceeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHccccCCcCHHHHHHHhcccC- Confidence 999999998876531 122 22 368999999999999999887766433 333333333332210 Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCC-CCCCcCCC Q lcl|Aclame:pro 447 VNDELERLKKQEDTQKEYDDLIPNN-QDGVIDET 479 (479) Q Consensus 447 ~~~El~~i~~E~~~~~~~~~~~~~~-~~~~~det 479 (479) ......+.+ +++++.++ T Consensus 428 ----------------~~~~~~~~e~~de~~~~~ 445 (449) T protein:vir:10 428 ----------------DDEEPLGEEDGDEEDKAT 445 (449) T ss_pred ----------------CCCCCCCCCCCccccccC Confidence 000111111 11111112 No 153 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=98.34 E-value=1.2e-06 Score=53.01 Aligned_cols=373 Identities=13% Similarity=0.044 Sum_probs=164.0 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQ 88 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~ 88 (479) |..+.......... .. .-..+..++.+... +.... ...-+..+-....|+. T Consensus 1 M~~f~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~------------~~~v~---~~~al~~~~V~~~v~~ 51 (397) T protein:vir:38 1 MPLLKLNKSHSQGF-------------SL-NDPDWVNFLTGGEA------------QKYVS---ADTALKNSDIFSLIMQ 51 (397) T ss_pred CcchhhhhcccCcc-------------cC-CchhhhhhhcCCcC------------Cceec---hHHhhccHHHHHHHHH Confidence 11111100000000 00 00001111111100 00000 0000112223334666 Q ss_pred HHhhhhccCeeecCCchhHHHHHHHHHh-cCHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCC Q lcl|Aclame:pro 89 KVGYSVGNPIVFNADDDNLTKLLNDLLG-EEFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKR 166 (479) Q Consensus 89 ~a~~l~g~~~~~~~~~~~~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~ 166 (479) +|+-+.+-|++.. +.....+...-.. -....+...+....+.+|.+|+.+-.+.+|.+ .+..++|..+.+..+... T Consensus 52 ia~~ia~~p~~~~--~~~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~ 129 (397) T protein:vir:38 52 LSGDLAMVRYTSE--SDRSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQDG 129 (397) T ss_pred HHHHHhhCccccc--ccHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCC Confidence 6666666666542 2222222111111 12445667788899999999999989988876 688899999987766542 Q ss_pred CCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEec Q lcl|Aclame:pro 167 QRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK 246 (479) Q Consensus 167 ~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~ 246 (479) . .+. |.+.... ........+..+.+.+++... . . T Consensus 130 ~-~~~-----y~~~~~~-~~~~~~~~~~~~eiih~~~~~------------------------------~---------~ 163 (397) T protein:vir:38 130 S-GLI-----YNINFDE-PAIGYMENVPAADVIHIRLLS------------------------------K---------N 163 (397) T ss_pred c-eEE-----EEEEecc-ccccceeEecCccEEEecCCC------------------------------C---------C Confidence 2 111 1111111 000011123333444332110 0 0 Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH---HHHh-------hcccceecCCCCcce Q lcl|Aclame:pro 247 NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF---IDNI-------RYYKSIKVDGGGGVD 316 (479) Q Consensus 247 n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~ 316 (479) +...|.|.+..+...+........-..+.+...+.|-.+++.......+.. .... ..++++.++++.+++ T Consensus 164 ~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~ 243 (397) T protein:vir:38 164 GGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQKGGLLDAETRIARSKEISKQIHNSDGPVVIDALEDYK 243 (397) T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHhcccccCCceecCCCceEE Confidence 113578888888777777666666666666667777766653322222211 1111 123345556555555 Q ss_pred eeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 317 KLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD--KSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLK 394 (479) Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~--~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 394 (479) .+..+.....+.+..+..++.|...-++|+.-.+.... .+.+..+. .+...|.-.+..+...+. T Consensus 244 ~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~~e~~~~--------------~~~~~l~P~~~~ie~~ln 309 (397) T protein:vir:38 244 PLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQQSSITQISG--------------QYAKSLNRYVQAIVGELN 309 (397) T ss_pred ecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHH--------------HHHHHHHHHHHHHHHHHH Confidence 55545555567778888888888887877655443322 11111111 222233333333332222 Q ss_pred hcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC----C-HHHHHHHHHHHHHH---HHhh Q lcl|Aclame:pro 395 ISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE----D-VNDELERLKKQEDT---QKEY 464 (479) Q Consensus 395 ~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~----d-~~~El~~i~~E~~~---~~~~ 464 (479) ..-..+ +++.+...+-.|..+.++.+.++ .|+++...++++++.-. | +..+.......... ..+. T Consensus 310 ~~l~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~~~~~~~~~~~~~~~g~~ 384 (397) T protein:vir:38 310 DKLHAN-----ISANIRFAIDAMGDQYASTISSSVKGGTIAGNQARFILQNSGYLAKDLPDPEKEPQQAIQLIQQEGGEN 384 (397) T ss_pred HhccCh-----hcccccccccCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCccccccccccccccccccccCCC Confidence 211111 11222223345777888887776 57999999988764321 1 11111010000000 0000 Q ss_pred hhccCCCCCCCcCC Q lcl|Aclame:pro 465 DDLIPNNQDGVIDE 478 (479) Q Consensus 465 ~~~~~~~~~~~~de 478 (479) ..... .+.+..+| T Consensus 385 ~~~~~-~e~~~~~~ 397 (397) T protein:vir:38 385 DGNNS-DERGSDPE 397 (397) T ss_pred CCCCC-CCCCCCCC Confidence 01111 11111222 No 154 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=98.32 E-value=1.3e-06 Score=52.77 Aligned_cols=374 Identities=9% Similarity=-0.077 Sum_probs=168.6 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccc-ccccccccc--ccccccC--cceeecchHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKR-RYYLLDGAK--VDDFTKV--NNKAINNYHK 83 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~-~~~~~~~~~--~~~~~~~--~~ri~~n~~~ 83 (479) |.+ +.+.+.+........ ......... ....... +.-+.++... T Consensus 1 Mgl-------------------------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~ 49 (409) T protein:vir:84 1 MSL-------------------------------FTRIFSGPSEERTLTKISGIPSPAEDWAMHGDRPGANSAMTLGAFY 49 (409) T ss_pred Cch-------------------------------hhhhhcCCCcccccccccccccccchhhccCcccchhhhhccHHHH Confidence 222 222222211000000 000000000 0000000 0112233455 Q ss_pred HHHHHHHhhhhccCeeecC--Cchh--HHHHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEE-eCCCCce-EEEE Q lcl|Aclame:pro 84 LLVDQKVGYSVGNPIVFNA--DDDN--LTKLLNDLL--GE---EFDDTITELYLNASNKGVEWLHPY-INRKGEF-KYVI 152 (479) Q Consensus 84 ~iv~~~a~~l~g~~~~~~~--~~~~--~~~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~-~d~~~~~-~i~~ 152 (479) ..|+.+++-+.+-|+.+-- ++.. ...+...+. -| ....+...+....+.+|.+|+.+. .+..|++ .+.. T Consensus 50 ~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~ 129 (409) T protein:vir:84 50 ACVTLLADTVASLSIDAYRKKDNVRIPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMP 129 (409) T ss_pred HHHHHHHHhhhhCceEEEEecCCcccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEE Confidence 6688888877777876421 1111 112222232 12 244566778889999999998764 5666765 5888 Q ss_pred EccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccc Q lcl|Aclame:pro 153 IPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINN 232 (479) Q Consensus 153 ~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479) ++|..+.+.......... ++.....++. .|..+.+.+++... T Consensus 130 l~p~~v~v~~~~~~~~~~-----~~~~~~~~g~------~~~~~dvih~~~~~--------------------------- 171 (409) T protein:vir:84 130 IHPDCIHVTDAKDEDGDW-----IEPVYRIDGK------VVPNHRIMHIKRYP--------------------------- 171 (409) T ss_pred EcCceeEEEEcCCCcceE-----EEEEecCCce------EEchhhEEEecCCC--------------------------- Confidence 999988765443322111 1111112221 12333333332100 Q ss_pred ccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHH--------h-hc Q lcl|Aclame:pro 233 KEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDN--------I-RY 303 (479) Q Consensus 233 ~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~--------~-~~ 303 (479) + .+...|.|.++.+...++..........+.+...+.|-.+++.... ..++.... . .. T Consensus 172 ---~---------~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~-l~~e~~~~~~~~~~~~~~n~ 238 (409) T protein:vir:84 172 ---V---------AGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDAD-LTPDQVKQTQKQWIQSHHNR 238 (409) T ss_pred ---C---------CcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCC-CCHHHHHHHHHHHHHHhccC Confidence 0 0113577878777777776666555555666666777666653222 22221111 1 12 Q ss_pred ccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 YKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT--GDKSGVALKFLYSLLDLKCSKTEKKFKKA 381 (479) Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~--g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~ 381 (479) ++++.++++.+.+.+..+.....+.+..+...+.|+..-++|+.-.+.. ++.++..++....... ... T Consensus 239 g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~~~f~----------~~~ 308 (409) T protein:vir:84 239 RLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQGINFV----------RHT 308 (409) T ss_pred CCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHH----------HHH Confidence 3345565555555544433445566677777888888878886544432 2222233322221111 111 Q ss_pred HHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHHHHHHHHHH Q lcl|Aclame:pro 382 IRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVNDELERLKKQ 457 (479) Q Consensus 382 l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~El~~i~~E 457 (479) |.-.++.|...+...- .....+++.+...+..|..+.++++.++ .|+++.-.++++++.-. +-+.-+....- T Consensus 309 l~P~~~~ie~~l~~~L---~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~ggD~~~~~~n~- 384 (409) T protein:vir:84 309 LLPWLRCIEQALDTFL---PRGQFVKFNVDGLMRGDVTARFTAYQMGLQNGIWSVNEVRAWEDAPPIPEGDIHLQPMNF- 384 (409) T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccc- Confidence 2222222222111110 1123456666777778999999988886 58999999988875422 11110000000 Q ss_pred HHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 458 EDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 458 ~~~~~~~~~~~~~~~~~~~det 479 (479) .......+..+.+.....++| T Consensus 385 -~~~~~~~~~~~~~~~~~~~~~ 405 (409) T protein:vir:84 385 -VPLGYVPPEEPAQEPQPNSAT 405 (409) T ss_pred -cccccCCccccCcCCCCCCcc Confidence 000000111111111112222 No 155 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=98.31 E-value=1.4e-06 Score=52.65 Aligned_cols=384 Identities=12% Similarity=0.024 Sum_probs=165.6 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQ 88 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~ 88 (479) |+.|.. ..++..++. ....++......-............ ... ....-...+.....|+. T Consensus 1 m~~~~~-------~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~v-~~~~a~~~~~v~~~i~~ 60 (412) T protein:vir:26 1 MNVIAK-------ENIVTRIKK----------KLIDNWIDQSTSKLYDFSPWKNRSF--WGV-INNTLETNETIFSAITK 60 (412) T ss_pred Cccchh-------hhhhhhhhh----------hHhhhhhcccccccccccccCCccc--ccc-chhhhhccHHHHHHHHH Confidence 111110 001111110 0011111100000000000000000 000 00111223444555777 Q ss_pred HHhhhhccCeeecCCchhHH-HHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEE Q lcl|Aclame:pro 89 KVGYSVGNPIVFNADDDNLT-KLLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPI 161 (479) Q Consensus 89 ~a~~l~g~~~~~~~~~~~~~-~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~ 161 (479) +|+-+..-|+.+--..+..+ .+...+. -|. -..+...++..++.+|.+|+.+..+.+|.+ .+..++|..+.+. T Consensus 61 ia~~iA~lp~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~ 140 (412) T protein:vir:26 61 LSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEML 140 (412) T ss_pred HHHhHhhCceeEeeccccccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEE Confidence 77777777876532222221 2222232 132 334556788899999999999999988876 6888999999887 Q ss_pred EcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 162 WDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVP 241 (479) Q Consensus 162 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vP 241 (479) .++... .+ +|.....++.. ..+.++.+.+++.- ++ T Consensus 141 ~~~~~~-~~-----~y~~~~~~g~~----~~~~~~evih~~~~------------------------------~~----- 175 (412) T protein:vir:26 141 IENQSR-EL-----YYSIHAATGNK----LIVHNMDMLHFKHI------------------------------VA----- 175 (412) T ss_pred EeCCCc-EE-----EEEEEcCCceE----EEEccccEEEeCCC------------------------------CC----- Confidence 765431 11 13332233321 12344444443210 00 Q ss_pred eEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH----H----h-hcccceecCCC Q lcl|Aclame:pro 242 FIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID----N----I-RYYKSIKVDGG 312 (479) Q Consensus 242 vv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~----~----~-~~~~~~~~~~~ 312 (479) .+...|.|.++-+...++..+.... . +.......+-+++..... ..++... . . ..++++.++++ T Consensus 176 ----~~~~~G~s~i~~~~~~i~~~~a~~~-~-~~~~~~~~~~~i~~~~~~-l~~e~~~~~~~~~~~~~~~~g~~~vl~~g 248 (412) T protein:vir:26 176 ----SNMVQGISPIDVLKNTTDFDNAVRT-F-NLTEMQKPDSFMLKYGSN-VGKEKRQQVLEDFKQYYEENGGILFQEPG 248 (412) T ss_pred ----CCCcccccHHHHHHHHHHHHHHHHH-H-HHHhcCCCCceEEecCCC-CCHHHHHHHHHHHHHHhhcCCCeeecCCC Confidence 0123477777666555554433221 1 222222233333332221 1122111 1 1 22345556655 Q ss_pred CcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 313 GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEY 392 (479) Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~ 392 (479) .+++.+........+.+..+..+..|+..-++|+.-.+..++.+...++... ...+...|.-.++.|... T Consensus 249 ~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~sn~e~~~----------~~f~~~~l~P~~~~ie~~ 318 (412) T protein:vir:26 249 VEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELN----------RFYLQHTLLPIVKQYEEE 318 (412) T ss_pred ceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHH----------HHHHHHHHHHHHHHHHHH Confidence 5555555444445567777777788888778776554433222211211111 111222233333333322 Q ss_pred HHhcCCCcc---ccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHH-HH------HHHHHHHHHH Q lcl|Aclame:pro 393 LKISGNKSY---DYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVN-DE------LERLKKQEDT 460 (479) Q Consensus 393 ~~~~~~~~~---~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~-~E------l~~i~~E~~~ 460 (479) +...--... ....+++.+...+..|..+.++++.++ +|+++.-.++++++.-.-+. .+ +..+.. T Consensus 319 ln~kLl~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~---- 394 (412) T protein:vir:26 319 FNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDT---- 394 (412) T ss_pred HHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccccccccc---- Confidence 222111111 112345555666778999999998886 57899999998876422110 01 011110 Q ss_pred HHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 461 QKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 461 ~~~~~~~~~~~~~~~~det 479 (479) ....+.....-+..++|+ T Consensus 395 -~~~~~~~~~gG~~n~~e~ 412 (412) T protein:vir:26 395 -PLELRKSLKGGDKNVNES 412 (412) T ss_pred -chhhcccccCCCCCcCCC Confidence 000011111112333444 No 156 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=98.30 E-value=1.5e-06 Score=52.45 Aligned_cols=381 Identities=11% Similarity=0.029 Sum_probs=166.4 Q ss_pred cChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCe Q lcl|Aclame:pro 19 ESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPI 98 (479) Q Consensus 19 ~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~ 98 (479) .....+...++..+ +.++......-........... ..... .+.-+..+-....|+.+|+-+..-|+ T Consensus 1 ~~~~~~~~~~k~~~----------~~~~~~~~~~~~~~~~~~~~~~--~~~v~-~~~a~~~~~v~~~i~~Ia~~ia~lp~ 67 (409) T protein:vir:94 1 MAKENIVTRIKKKL----------IDNWIDQSASKLYDFSPWKNKS--FWGVI-NNTLETNETIFSAITKLSNSMASLPL 67 (409) T ss_pred CcccccchhhhhHH----------hhhhhcCCcccccccccccCcc--ccccc-hhhhhccHHHHHHHHHHHHhhhhCce Confidence 23333333332211 1111110000000000000000 00000 00011223345557777777777777 Q ss_pred eecCCchhH-HHHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceE Q lcl|Aclame:pro 99 VFNADDDNL-TKLLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELV 171 (479) Q Consensus 99 ~~~~~~~~~-~~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~ 171 (479) ++--..+.. ..+...+. -| .-..+...++...+.+|.+|+++..+.+|.+ .+..++|..+.++.+.... .+ T Consensus 68 ~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~-~~- 145 (409) T protein:vir:94 68 KMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR-EL- 145 (409) T ss_pred eEeecccccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEeCCCc-EE- Confidence 652221111 12222232 13 2344456678889999999999999888876 6888999999887765421 11 Q ss_pred EEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCC Q lcl|Aclame:pro 172 AFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKC 251 (479) Q Consensus 172 ~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g 251 (479) +|.....++..+ .+..+.+.+++.- ++ .+...| T Consensus 146 ----~y~~~~~~g~~~----~~~~~dvih~r~~------------------------------~~---------~~~~~G 178 (409) T protein:vir:94 146 ----YYSIHAATGNKL----IVHNMDMLHFKHI------------------------------VA---------SNMVQG 178 (409) T ss_pred ----EEEEEcCCceEE----EEccccEEEecCC------------------------------CC---------CCcccc Confidence 133333333221 2333344443210 00 012347 Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH----H----h-hcccceecCCCCcceeeecCC Q lcl|Aclame:pro 252 VSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID----N----I-RYYKSIKVDGGGGVDKLEINI 322 (479) Q Consensus 252 ~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~----~----~-~~~~~~~~~~~~~~~~~~~~~ 322 (479) .|.+..+...++........ +.......+-+++..... ..++... . . ..++++.++++.+++.+..+. T Consensus 179 ~s~l~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~-l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~ 255 (409) T protein:vir:94 179 ISPIDVLKNTTDFDNAVRTF--NLTEMQKPDSFMLKYGSN-VGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKY 255 (409) T ss_pred ccHHHHHHHHHHHHHHHHHH--HHHhcCCCCeeEEecCCC-CCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCCh Confidence 77777666666644433221 222222223333322211 1122111 1 1 223455666655655555444 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc- Q lcl|Aclame:pro 323 PVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSY- 401 (479) Q Consensus 323 ~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~- 401 (479) ....+.+..+.....|+..-++|+.-.+..+..+...++...... +...|.-+++.|...+...--... T Consensus 256 ~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f----------~~~~l~P~~~~ie~~ln~~Ll~~~~ 325 (409) T protein:vir:94 256 VSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFY----------LQHTLLPIVKQYEEEFNRKLLTKTD 325 (409) T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhCCccc Confidence 445566777777788888878876655443333322222211111 122233333322222221110011 Q ss_pred --ccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHH-----HHHHHHHHHHHHHhhhhccCC Q lcl|Aclame:pro 402 --DYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVND-----ELERLKKQEDTQKEYDDLIPN 470 (479) Q Consensus 402 --~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~-----El~~i~~E~~~~~~~~~~~~~ 470 (479) ....+++.....+..|..+.++++.++ +|+++.-.+++.++.-. +-+. -+..+.. ....+.... T Consensus 326 ~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~-----~~~~~~~~k 400 (409) T protein:vir:94 326 REKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDT-----PLELRKSLK 400 (409) T ss_pred ccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeEeeccccccccc-----chhhccccc Confidence 112344444566677899999998886 68899988888875422 1110 0011110 000011111 Q ss_pred CCCCCcCCC Q lcl|Aclame:pro 471 NQDGVIDET 479 (479) Q Consensus 471 ~~~~~~det 479 (479) .-+..++|+ T Consensus 401 GG~~n~~e~ 409 (409) T protein:vir:94 401 GGDKNVNES 409 (409) T ss_pred CCCCCcCCC Confidence 222334444 No 157 >protein:vir:1785 Length: 555 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570351;genbank:gi:18640510;genbank:GeneID:932723 Probab=98.29 E-value=1.6e-06 Score=52.34 Aligned_cols=433 Identities=10% Similarity=0.030 Sum_probs=182.9 Q ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhcc--- Q lcl|Aclame:pro 20 STINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGN--- 96 (479) Q Consensus 20 ~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~--- 96 (479) --.-+.+..+.+ ..+|.......+++|+- -.|++-.. +. ........++.-+-+...++.+++.|++- T Consensus 1 m~~~~~~r~~~l-~~~R~~~e~~w~e~~~y--~lP~~~~~---~~---~~~~~~~~~~~dst~~~a~~~Laa~l~~~ltp 71 (555) T protein:vir:17 1 MKHSAQAKYMML-RADREDYLDSGRQSARL--TLPYILTD---EG---HVQGGYLPTPWQSVGSKGVNVLASKLMLSLFP 71 (555) T ss_pred ChhHHHHHHHHH-HHHhhHHHHHHHHHHHH--hcccccCC---CC---CcccccccccccccHHHHHHHHHHHHHHhhcC Confidence 112233344332 22333333333333331 11211100 00 01112223455666777888888777543 Q ss_pred ---C-eeecCCch---------hHHHHH------------HHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEE Q lcl|Aclame:pro 97 ---P-IVFNADDD---------NLTKLL------------NDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYV 151 (479) Q Consensus 97 ---~-~~~~~~~~---------~~~~~~------------~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~ 151 (479) | +++...+. .....+ ..+..++|.....++.++...+|.++++ .++++ ++ T Consensus 72 p~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly--~~~~~---~~ 146 (555) T protein:vir:17 72 VNTSFFKLQINDAEIDNLGMDEQARSEIDLSLSRIERIVTQDIAESSDRVHLEMAMKHLIVTGNALLY--QGKKN---LK 146 (555) T ss_pred CCCcccccccCHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEE--ecCCc---ee Confidence 1 23332221 111111 2234578999999999999999998764 45553 44 Q ss_pred EEccceeEEEEcCCCCCceEEEEEEEeeeccc-----CceEE-------------------E----EEEEeCCcEEEEEE Q lcl|Aclame:pro 152 IIPAEEAIPIWDSKRQRELVAFIRFYYIEDID-----GNKIK-------------------R----VEYYTENDITYFIE 203 (479) Q Consensus 152 ~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~-----~~~~~-------------------~----~~~y~~~~i~~~~~ 203 (479) +++-.++++--|. . .++..++|.++..-.. +.... + .+.+....+..|.. T Consensus 147 ~~pl~~y~v~~d~-~-G~vd~v~rk~~~t~~ql~~~fg~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~t~ 224 (555) T protein:vir:17 147 LYPLDRFVVSRDG-E-GNVMEIVTEEQIDRSLLPEEFQKVGGLEGAPDSNAVGEDGPKMGVTAPGGRDKGKSNDALVYTY 224 (555) T ss_pred EEEcCeEEEeeCC-C-cCeeEEEeeeeecHHHHHHHhhhccccchhhhhhhccccchhhhhhhhcccccCCCcceeEeec Confidence 5555554443443 2 4455556655432110 00000 0 00000111111100 Q ss_pred cCCccccccccccccccccccccccc-cccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 204 RGNSFIQEFLYDEYGKMTDIQEGHFR-INNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNLD 277 (479) Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~ 277 (479) ..... ....+.....+... .....-+|..+|++.+. ++.+|+|-.++..+-+..+|...-......+ T Consensus 225 ~~~~~-------~~~~~~~e~~~~~v~~~l~e~g~~e~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~ 297 (555) T protein:vir:17 225 VCRKD-------GQVKWHQECDGKVIPGSNSSAPYTHNPWIPLRFNIVDGEAYGRGRVEEFMGDLKSLEALSQAMVEGSA 297 (555) T ss_pred ccccC-------CeeEEEEecCceeccccccccCcccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHH Confidence 00000 00000000011111 11234567778887664 3468999999999999999999888999999 Q ss_pred HhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeeecC--CCHHHHHHHHHHHHHHHHHHhCCCCCcccccccc Q lcl|Aclame:pro 278 EIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEIN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDK 355 (479) Q Consensus 278 ~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~ 355 (479) ....|.+.+.-.+........ . .....+.....++++.+... .+....+..++.++..|....... ...+.... T Consensus 298 ~~~~pp~lv~~~g~~~~~~l~-~-~~~g~v~~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~aFm~~--~~~d~~r~ 373 (555) T protein:vir:17 298 ASAKVVFMVSPSATTKPQNLA-L-AANGAIIQGRPDDVSVVQANKAADFRTVLEMIQKLEQRISDAFLML--QVRQSERT 373 (555) T ss_pred HHhCCceeeccccccCcceee-c-CCCceeecCCcccceeeeccccchhhHHHHHHHHHHHHHHHHHhhc--CCCCcccc Confidence 999998766322222111111 1 11123333334556666533 345566677777777665443321 22334556 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCc-cccceeeEEeCCCCCC-CHHHHHH----HHHHH Q lcl|Aclame:pro 356 SGVALKFLYSLLDLKCSKTEKKF-KKAIRELLWFVCEYLKISGNKS-YDYKTVQITFNHSMII-NEAEKID----MAAKS 428 (479) Q Consensus 356 Sg~Ai~~~~~~l~~k~~~~~~~~-~~~l~~~~~li~~~~~~~~~~~-~~~~~i~i~f~~~~p~-d~~e~a~----~~~k~ 428 (479) ||+.+..+.........-.-..+ .+.+.-+++-++.++...+..+ .+...+.+.+.-++.. ...+.++ .++.+ T Consensus 374 TAtEV~~r~~E~~~~LGpv~~rl~~E~L~Pli~R~~~il~r~g~lP~~p~~~v~~~i~~~l~~l~r~~~~~~l~~~~~~l 453 (555) T protein:vir:17 374 TATEVQATVQELNEQIGGIYSNLTTELLQPYLARKLHLLQKQRKLPQLPKDLVQPTVVAGLWGVGRGQDKQQLMEFITTL 453 (555) T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHhhhccceeehHHHHHHHHHHHHHHHHHHHH Confidence 88887764444433332211111 1222223332333333333321 1112223332222211 1111111 22222 Q ss_pred hcc---------CChHHHHH----hCCCCC----CHHHHHHHHHHHHHHHHhh-------hhccCC----C--CCCC--- Q lcl|Aclame:pro 429 TGI---------VSDETIVS----NHPWVE----DVNDELERLKKQEDTQKEY-------DDLIPN----N--QDGV--- 475 (479) Q Consensus 429 ~g~---------is~et~~~----~l~~~~----d~~~El~~i~~E~~~~~~~-------~~~~~~----~--~~~~--- 475 (479) +++ +....+++ .+|... ..++|+++++++++++... .+..++ . ..+. T Consensus 454 aq~~~~p~~~d~id~d~~~~~~a~~~Gv~p~~ivrs~eev~~~rq~~~~~~~q~~~~~qa~~~~~~~~~~~~~~~~~~~~ 533 (555) T protein:vir:17 454 AQTMGPEIAMKYINPTEFIKRLAAAQGIDTLQLINSPETMKQLGDQQKQDMVQASLINQAGQLAKTPMAEQAMQLIQQQQ 533 (555) T ss_pred HhhcCchhHhhcCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhccccch Confidence 222 22233332 333211 2356666665444322111 111111 0 0000 Q ss_pred ---------cCCC Q lcl|Aclame:pro 476 ---------IDET 479 (479) Q Consensus 476 ---------~det 479 (479) .-+| T Consensus 534 ~~a~~~~~a~~~~ 546 (555) T protein:vir:17 534 EGAQDAGAAESET 546 (555) T ss_pred hhhhHHHHHHhhc Confidence 1111 No 158 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=98.27 E-value=1.8e-06 Score=52.10 Aligned_cols=400 Identities=12% Similarity=0.030 Sum_probs=170.1 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCc-c--cccccccc---cccccccc--cccCcceeecc Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTD-V--NNKRRYYL---LDGAKVDD--FTKVNNKAINN 80 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~-~--~~~~~~~~---~~~~~~~~--~~~~~~ri~~n 80 (479) |--.+.+|.- +.-...++-...+...--+...+.. + +....... ........ ......-+..+ T Consensus 1 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 71 (441) T protein:vir:94 1 MHWYNTDCYF---------VDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHS 71 (441) T ss_pred CccccCcccc---------ccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccH Confidence 0000000000 0000000000000000001110000 0 00000000 00000000 00000000111 Q ss_pred hHHHHHHHHHhhhhccCeeecCCchh--HHHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEE Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGNPIVFNADDDN--LTKLLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVI 152 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~~~~~~~~~~~--~~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~ 152 (479) =.-..|+.+++-+..-|+++.-+.+. ...+...+. -|. -..+...+....+.+|.+|+.+..+.+|++ .+.. T Consensus 72 ~V~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~ 151 (441) T protein:vir:94 72 DIFTAVMMIASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTF 151 (441) T ss_pred HHHHHHHHHHHhhccCceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEE Confidence 11224666666666667776432211 111222232 132 234556778889999999999999988886 5899 Q ss_pred EccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccc Q lcl|Aclame:pro 153 IPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINN 232 (479) Q Consensus 153 ~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479) ++|..+.+..++.. .+.+. +...+..+ ......|.++.+.+++.- T Consensus 152 i~~~~v~v~~d~~g--~~~~~---~~~~~~~~--~~~~~~~~~~dvih~k~~---------------------------- 196 (441) T protein:vir:94 152 RKTSEIELKSDARG--RLYYF---HQRIDSNG--NNIERNVKFEDMLDIKFY---------------------------- 196 (441) T ss_pred EcCceeEEEECCCc--cEEEE---EEEeccCC--ceeEEEEccccEEEeccC---------------------------- Confidence 99999998877542 22211 11111111 112223334444333110 Q ss_pred ccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH----HHHh------- Q lcl|Aclame:pro 233 KEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF----IDNI------- 301 (479) Q Consensus 233 ~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~----~~~~------- 301 (479) + .+...|.|.++.+...++.......-..+.+...+.|-.++.-......++. ...+ T Consensus 197 ---~---------~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~e~~r~~~~~~~~G~ 264 (441) T protein:vir:94 197 ---S---------LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGT 264 (441) T ss_pred ---C---------CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHHHHHHHHHHHHhcCc Confidence 0 0123477877777777766555555555556666777666542221111121 1111 Q ss_pred -hcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc-cccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 -RYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG-DKSGVALKFLYSLLDLKCSKTEKKFK 379 (479) Q Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-~~Sg~Ai~~~~~~l~~k~~~~~~~~~ 379 (479) ..++++.++++.+.+.++.+.....+.+..+.....|...-+.|+.-.+..+ +.|.+..... |. T Consensus 265 ~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~--------------~~ 330 (441) T protein:vir:94 265 KQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLD--------------YL 330 (441) T ss_pred cccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHH--------------HH Confidence 1234566666666666655555556777777788888888787765443221 1121111111 11 Q ss_pred HHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHH-- Q lcl|Aclame:pro 380 KAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVNDELER-- 453 (479) Q Consensus 380 ~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~El~~-- 453 (479) ..|.-.++.+...+...-........+++.+...+-.|..+.++.+.++ +|+++...++++++. +++.+..+-. T Consensus 331 ~tl~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~ 410 (441) T protein:vir:94 331 STLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVD 410 (441) T ss_pred HHHHHHHHHHHHHHhhhccccccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeec Confidence 1222222222222221111111123445555666677888999988886 689999999888654 2222211100 Q ss_pred ---HHHHHHHH---HhhhhccCCCCCCCcCC Q lcl|Aclame:pro 454 ---LKKQEDTQ---KEYDDLIPNNQDGVIDE 478 (479) Q Consensus 454 ---i~~E~~~~---~~~~~~~~~~~~~~~de 478 (479) +-.+...+ .+.........+|..+| T Consensus 411 ~n~~~~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:94 411 LNHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred ccccccccccccccccccccccccCCCCCCC Confidence 11111100 00000111122333344 No 159 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=98.27 E-value=1.8e-06 Score=52.10 Aligned_cols=400 Identities=12% Similarity=0.030 Sum_probs=170.1 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCc-c--cccccccc---cccccccc--cccCcceeecc Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTD-V--NNKRRYYL---LDGAKVDD--FTKVNNKAINN 80 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~-~--~~~~~~~~---~~~~~~~~--~~~~~~ri~~n 80 (479) |--.+.+|.- +.-...++-...+...--+...+.. + +....... ........ ......-+..+ T Consensus 1 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 71 (441) T protein:vir:79 1 MHWYNTDCYF---------VDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHS 71 (441) T ss_pred CccccCcccc---------ccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccH Confidence 0000000000 0000000000000000001110000 0 00000000 00000000 00000000111 Q ss_pred hHHHHHHHHHhhhhccCeeecCCchh--HHHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEE Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGNPIVFNADDDN--LTKLLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVI 152 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~~~~~~~~~~~--~~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~ 152 (479) =.-..|+.+++-+..-|+++.-+.+. ...+...+. -|. -..+...+....+.+|.+|+.+..+.+|++ .+.. T Consensus 72 ~V~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~ 151 (441) T protein:vir:79 72 DIFTAVMMIASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTF 151 (441) T ss_pred HHHHHHHHHHHhhccCceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEE Confidence 11224666666666667776432211 111222232 132 234556778889999999999999988886 5899 Q ss_pred EccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccc Q lcl|Aclame:pro 153 IPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINN 232 (479) Q Consensus 153 ~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479) ++|..+.+..++.. .+.+. +...+..+ ......|.++.+.+++.- T Consensus 152 i~~~~v~v~~d~~g--~~~~~---~~~~~~~~--~~~~~~~~~~dvih~k~~---------------------------- 196 (441) T protein:vir:79 152 RKTSEIELKSDARG--RLYYF---HQRIDSNG--NNIERNVKFEDMLDIKFY---------------------------- 196 (441) T ss_pred EcCceeEEEECCCc--cEEEE---EEEeccCC--ceeEEEEccccEEEeccC---------------------------- Confidence 99999998877542 22211 11111111 112223334444333110 Q ss_pred ccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH----HHHh------- Q lcl|Aclame:pro 233 KEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF----IDNI------- 301 (479) Q Consensus 233 ~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~----~~~~------- 301 (479) + .+...|.|.++.+...++.......-..+.+...+.|-.++.-......++. ...+ T Consensus 197 ---~---------~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~e~~r~~~~~~~~G~ 264 (441) T protein:vir:79 197 ---S---------LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGT 264 (441) T ss_pred ---C---------CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHHHHHHHHHHHHhcCc Confidence 0 0123477877777777766555555555556666777666542221111121 1111 Q ss_pred -hcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc-cccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 -RYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG-DKSGVALKFLYSLLDLKCSKTEKKFK 379 (479) Q Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-~~Sg~Ai~~~~~~l~~k~~~~~~~~~ 379 (479) ..++++.++++.+.+.++.+.....+.+..+.....|...-+.|+.-.+..+ +.|.+..... |. T Consensus 265 ~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~--------------~~ 330 (441) T protein:vir:79 265 KQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLD--------------YL 330 (441) T ss_pred cccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHH--------------HH Confidence 1234566666666666655555556777777788888888787765443221 1121111111 11 Q ss_pred HHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHH-- Q lcl|Aclame:pro 380 KAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVNDELER-- 453 (479) Q Consensus 380 ~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~El~~-- 453 (479) ..|.-.++.+...+...-........+++.+...+-.|..+.++.+.++ +|+++...++++++. +++.+..+-. T Consensus 331 ~tl~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~ 410 (441) T protein:vir:79 331 STLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVD 410 (441) T ss_pred HHHHHHHHHHHHHHhhhccccccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeec Confidence 1222222222222221111111123445555666677888999988886 689999999888654 2222211100 Q ss_pred ---HHHHHHHH---HhhhhccCCCCCCCcCC Q lcl|Aclame:pro 454 ---LKKQEDTQ---KEYDDLIPNNQDGVIDE 478 (479) Q Consensus 454 ---i~~E~~~~---~~~~~~~~~~~~~~~de 478 (479) +-.+...+ .+.........+|..+| T Consensus 411 ~n~~~~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:79 411 LNHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred ccccccccccccccccccccccccCCCCCCC Confidence 11111100 00000111122333344 No 160 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=98.27 E-value=1.8e-06 Score=52.03 Aligned_cols=380 Identities=12% Similarity=0.038 Sum_probs=167.8 Q ss_pred cChHHHHHHHHHHHHHhhH-HHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccC Q lcl|Aclame:pro 19 ESTINLVKVIEHYILKHRP-EKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNP 97 (479) Q Consensus 19 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~ 97 (479) .....++..++..+...-. +.-..+.++ .+...... ... ..+.-...+-....|+.+|+-+..-| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-------~~v-~~~~~~~~~~V~~ci~~Ia~~ia~lp 66 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQSTSKLYDF------SPWKNRSF-------WGV-INNTLETNETIFSAITKLSNSMASLP 66 (409) T ss_pred CCccchhhhhhhhhhhhhhcccccccccc------ccccCccc-------ccc-chhhhhccHHHHHHHHHHHHhhhhCc Confidence 3344444444332211100 000000000 00000000 000 00001123334555777777777777 Q ss_pred eeecCCchhHH-HHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCce Q lcl|Aclame:pro 98 IVFNADDDNLT-KLLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQREL 170 (479) Q Consensus 98 ~~~~~~~~~~~-~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~ 170 (479) +.+--..+..+ .+...+. -|. -..+...++..++.+|.+|+.+..+.+|++ .+..++|..+.+..++... .+ T Consensus 67 ~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~-~~ 145 (409) T protein:vir:93 67 LKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR-EL 145 (409) T ss_pred eeEeeccccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCc-EE Confidence 76532222222 2222232 132 344556778889999999999999988875 6888999998877665321 11 Q ss_pred EEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCC Q lcl|Aclame:pro 171 VAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEK 250 (479) Q Consensus 171 ~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~ 250 (479) +|.....++.. ..+.++.+.+++.. ++ .+... T Consensus 146 -----~y~~~~~~g~~----~~~~~~eVih~r~~------------------------------~~---------~~~~~ 177 (409) T protein:vir:93 146 -----YYSIHAATGNK----LIVHNMDMLHFKHI------------------------------VA---------SNMVQ 177 (409) T ss_pred -----EEEEEcCCceE----EEEccccEEEeCCC------------------------------CC---------CCccc Confidence 13333233322 12334444443210 00 01224 Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH----H----h-hcccceecCCCCcceeeecC Q lcl|Aclame:pro 251 CVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID----N----I-RYYKSIKVDGGGGVDKLEIN 321 (479) Q Consensus 251 g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~----~----~-~~~~~~~~~~~~~~~~~~~~ 321 (479) |.|.++.+...++........ ........+-.++.... ...++... . . ..++++.++++.+++.+..+ T Consensus 178 G~s~i~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~-~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~ 254 (409) T protein:vir:93 178 GISPIDVLKNTTDFDNAVRTF--NLTEMQKPDSFMLKYGS-NVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKK 254 (409) T ss_pred cccHHHHHHHHHHHHHHHHHH--HHHhcCCCCceEEecCC-CCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCC Confidence 777777666655544332111 22222222323332211 11122111 1 1 22345556665555555544 Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc Q lcl|Aclame:pro 322 IPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSY 401 (479) Q Consensus 322 ~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~ 401 (479) .....+.+..+..+..|+..-++|+.-.+..++.+...++.... ..+...|.-+++.|...+...--.+. T Consensus 255 ~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~----------~f~~~~l~P~~~~ie~~l~~~Ll~~~ 324 (409) T protein:vir:93 255 YVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNR----------FYLQHTLLPIVKQYEEEFNRKLLTKT 324 (409) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHH----------HHHHHHHHHHHHHHHHHHHhhcCCcc Confidence 44456677777778888888888866554433333222222111 12222233333333322221111111 Q ss_pred ---ccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCH--HH-----HHHHHHHHHHHHHhhhhccC Q lcl|Aclame:pro 402 ---DYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDV--ND-----ELERLKKQEDTQKEYDDLIP 469 (479) Q Consensus 402 ---~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~--~~-----El~~i~~E~~~~~~~~~~~~ 469 (479) ....+++.+...+-.|..+.++++.++ +|+++.-.++++++.-.-+ +. -+..+..- .. .+... T Consensus 325 ~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~----~~-~~~~~ 399 (409) T protein:vir:93 325 DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTP----LE-LRKSL 399 (409) T ss_pred cccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccccccccc----hh-hcccc Confidence 112344444566667889999988886 5789999998887642211 10 01111110 00 00111 Q ss_pred CCCCCCcCCC Q lcl|Aclame:pro 470 NNQDGVIDET 479 (479) Q Consensus 470 ~~~~~~~det 479 (479) ..-+..++|+ T Consensus 400 ~gG~~n~~e~ 409 (409) T protein:vir:93 400 KGGDKNVNES 409 (409) T ss_pred cCCCCCcCCC Confidence 1111233333 No 161 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=98.27 E-value=1.8e-06 Score=52.02 Aligned_cols=379 Identities=12% Similarity=0.013 Sum_probs=172.9 Q ss_pred HHHHHHHHHHHHHhhH--H--HHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccC Q lcl|Aclame:pro 22 INLVKVIEHYILKHRP--E--KYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNP 97 (479) Q Consensus 22 ~~~~~~i~~~~~~~~~--~--~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~ 97 (479) .-|... .++... . .....-....|.... .. .......-+...-.-..|+.+|+-+.+-| T Consensus 1 Mg~f~~----~~~r~~~~~~~~~~~~~~~~~~~~~~----------~~---~~~~~~~al~~~~v~~cv~~Ia~~iA~~p 63 (416) T protein:vir:81 1 MGIFYK----NEKRDLQYNEDDLQMMVQTLPGFQGT----------KL---RQYKDIEAIRHSDIFTAVMMIASDLARMP 63 (416) T ss_pred CCcccc----cccccccCCCcchhHHHHHhcccccc----------Cc---cccchhhhhcchHHHHHHHHHHHhhccCc Confidence 000000 000000 0 000000000000000 00 00000000111112224677777777778 Q ss_pred eeecCCchhH--HHHHHHHHh--cC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCc Q lcl|Aclame:pro 98 IVFNADDDNL--TKLLNDLLG--EE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRE 169 (479) Q Consensus 98 ~~~~~~~~~~--~~~~~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~ 169 (479) +++..+.+.. ..+...+.. |. ...+...+....+.+|.+|+.+..+.+|.+ .+..++|..+.++.+... . T Consensus 64 ~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g--~ 141 (416) T protein:vir:81 64 IRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARG--R 141 (416) T ss_pred eEEecCccccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCc--c Confidence 8765433211 122222321 32 345556778888999999999999988886 588899999988776542 2 Q ss_pred eEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCC Q lcl|Aclame:pro 170 LVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE 249 (479) Q Consensus 170 ~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~ 249 (479) +.+. +...+..+ ......+.+..+.+++.- | .+.. T Consensus 142 ~~~~---~~~~~~~~--~~~~~~~~~~evihir~~------------------------------------~----~d~~ 176 (416) T protein:vir:81 142 LYYF---HQRIDSNG--NNIERNVKFEDMLDIKFY------------------------------------S----LDGI 176 (416) T ss_pred EEEE---EEEecCCC--ceeEEEEccccEEEeccC------------------------------------C----CCCc Confidence 2211 11111111 112223344444333210 0 0123 Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHH----HHh--------hcccceecCCCCccee Q lcl|Aclame:pro 250 KCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFI----DNI--------RYYKSIKVDGGGGVDK 317 (479) Q Consensus 250 ~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~ 317 (479) .|.|.++.+...++.......-..+.+...+.|-.+++-......++.. ..+ ..++++.++++.+.+. T Consensus 177 ~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~ 256 (416) T protein:vir:81 177 NGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQ 256 (416) T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEe Confidence 4778888777777766655555555566667776665432211111111 111 1234566666656655 Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 318 LEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG-DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS 396 (479) Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 396 (479) +..+.....+.+..+..++.|+..-+.|+.-.+..+ +.|.+..... |...|.-+++.|...+... T Consensus 257 l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~--------------~~~~l~P~~~~ie~~ln~~ 322 (416) T protein:vir:81 257 LEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLD--------------YLSTLKPYITCVCAELNFK 322 (416) T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccHHHHHHH--------------HHHHHHHHHHHHHHHHhhh Confidence 554444555777777788888888787765443221 1121211111 1122333333332222221 Q ss_pred CCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHH-----HHHHHHH---Hhh Q lcl|Aclame:pro 397 GNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVNDELERL-----KKQEDTQ---KEY 464 (479) Q Consensus 397 ~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~El~~i-----~~E~~~~---~~~ 464 (479) -........+++.+...+-.|..+.++++.++ .|+++.-.++++++. +++.+..+-.+ ..+...+ .+. T Consensus 323 l~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~~~~~~~~~~ 402 (416) T protein:vir:81 323 FNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKS 402 (416) T ss_pred ccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccccccCcccc Confidence 11111223455555666677899999988886 679999999988754 22222211111 1111000 000 Q ss_pred hhccCCCCCCCcCC Q lcl|Aclame:pro 465 DDLIPNNQDGVIDE 478 (479) Q Consensus 465 ~~~~~~~~~~~~de 478 (479) ........+|..+| T Consensus 403 ~~~~~~~kgGe~n~ 416 (416) T protein:vir:81 403 RATDKKLKGGEENE 416 (416) T ss_pred cccccccCCCCCCC Confidence 11111222334444 No 162 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=98.27 E-value=1.8e-06 Score=52.02 Aligned_cols=379 Identities=12% Similarity=0.013 Sum_probs=172.9 Q ss_pred HHHHHHHHHHHHHhhH--H--HHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccC Q lcl|Aclame:pro 22 INLVKVIEHYILKHRP--E--KYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNP 97 (479) Q Consensus 22 ~~~~~~i~~~~~~~~~--~--~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~ 97 (479) .-|... .++... . .....-....|.... .. .......-+...-.-..|+.+|+-+.+-| T Consensus 1 Mg~f~~----~~~r~~~~~~~~~~~~~~~~~~~~~~----------~~---~~~~~~~al~~~~v~~cv~~Ia~~iA~~p 63 (416) T protein:vir:45 1 MGIFYK----NEKRDLQYNEDDLQMMVQTLPGFQGT----------KL---RQYKDIEAIRHSDIFTAVMMIASDLARMP 63 (416) T ss_pred CCcccc----cccccccCCCcchhHHHHHhcccccc----------Cc---cccchhhhhcchHHHHHHHHHHHhhccCc Confidence 000000 000000 0 000000000000000 00 00000000111112224677777777778 Q ss_pred eeecCCchhH--HHHHHHHHh--cC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCc Q lcl|Aclame:pro 98 IVFNADDDNL--TKLLNDLLG--EE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRE 169 (479) Q Consensus 98 ~~~~~~~~~~--~~~~~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~ 169 (479) +++..+.+.. ..+...+.. |. ...+...+....+.+|.+|+.+..+.+|.+ .+..++|..+.++.+... . T Consensus 64 ~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g--~ 141 (416) T protein:vir:45 64 IRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARG--R 141 (416) T ss_pred eEEecCccccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCc--c Confidence 8765433211 122222321 32 345556778888999999999999988886 588899999988776542 2 Q ss_pred eEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCC Q lcl|Aclame:pro 170 LVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE 249 (479) Q Consensus 170 ~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~ 249 (479) +.+. +...+..+ ......+.+..+.+++.- | .+.. T Consensus 142 ~~~~---~~~~~~~~--~~~~~~~~~~evihir~~------------------------------------~----~d~~ 176 (416) T protein:vir:45 142 LYYF---HQRIDSNG--NNIERNVKFEDMLDIKFY------------------------------------S----LDGI 176 (416) T ss_pred EEEE---EEEecCCC--ceeEEEEccccEEEeccC------------------------------------C----CCCc Confidence 2211 11111111 112223344444333210 0 0123 Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHH----HHh--------hcccceecCCCCccee Q lcl|Aclame:pro 250 KCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFI----DNI--------RYYKSIKVDGGGGVDK 317 (479) Q Consensus 250 ~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~ 317 (479) .|.|.++.+...++.......-..+.+...+.|-.+++-......++.. ..+ ..++++.++++.+.+. T Consensus 177 ~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~ 256 (416) T protein:vir:45 177 NGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQ 256 (416) T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEe Confidence 4778888777777766655555555566667776665432211111111 111 1234566666656655 Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 318 LEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG-DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS 396 (479) Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 396 (479) +..+.....+.+..+..++.|+..-+.|+.-.+..+ +.|.+..... |...|.-+++.|...+... T Consensus 257 l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~--------------~~~~l~P~~~~ie~~ln~~ 322 (416) T protein:vir:45 257 LEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLD--------------YLSTLKPYITCVCAELNFK 322 (416) T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccHHHHHHH--------------HHHHHHHHHHHHHHHHhhh Confidence 554444555777777788888888787765443221 1121211111 1122333333332222221 Q ss_pred CCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHH-----HHHHHHH---Hhh Q lcl|Aclame:pro 397 GNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVNDELERL-----KKQEDTQ---KEY 464 (479) Q Consensus 397 ~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~El~~i-----~~E~~~~---~~~ 464 (479) -........+++.+...+-.|..+.++++.++ .|+++.-.++++++. +++.+..+-.+ ..+...+ .+. T Consensus 323 l~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~~~~~~~~~~ 402 (416) T protein:vir:45 323 FNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKS 402 (416) T ss_pred ccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccccccCcccc Confidence 11111223455555666677899999988886 679999999988754 22222211111 1111000 000 Q ss_pred hhccCCCCCCCcCC Q lcl|Aclame:pro 465 DDLIPNNQDGVIDE 478 (479) Q Consensus 465 ~~~~~~~~~~~~de 478 (479) ........+|..+| T Consensus 403 ~~~~~~~kgGe~n~ 416 (416) T protein:vir:45 403 RATDKKLKGGEENE 416 (416) T ss_pred cccccccCCCCCCC Confidence 11111222334444 No 163 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=98.25 E-value=2e-06 Score=51.77 Aligned_cols=410 Identities=11% Similarity=-0.015 Sum_probs=163.9 Q ss_pred CCCcccCcH-----H-HHHHHHhc-------------cChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccc Q lcl|Aclame:pro 1 MLNIYISET-----D-LIKVQLKK-------------ESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYL 61 (479) Q Consensus 1 ~~~~~~~~~-----~-~~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~ 61 (479) -+++-.|+- . -+...... ........-- ++..-.|.. .....=.-|.+++...+... T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~-~~~~~~r~g--~~~~~~~~g~~~~~epp~d~- 86 (648) T protein:vir:79 11 WSRISLMWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDP-KMSLVKRIG--LAIMDGGGGGRDFEEPEFDF- 86 (648) T ss_pred hhhhhhhccCccccccccccccccccCCCccccCCCCcccccccccc-hhHHHHHhH--HHHHhhcCCccccccCCcCH- Confidence 111111110 0 00000000 0000000000 000000100 00011111223222111100 Q ss_pred cccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchh-HHHHHH-H--HHhc---CHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 62 LDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDN-LTKLLN-D--LLGE---EFDDTITELYLNASNKG 134 (479) Q Consensus 62 ~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~-~~~~~~-~--~~~n---~~~~~~~~~~~~~~~~G 134 (479) ....+ .--..++....|+.++.-+.+-|+.+...+.. ...... . ..-| ....+...+..+.+.+| T Consensus 87 ------~~l~~--l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~G 158 (648) T protein:vir:79 87 ------NEITS--AYNTEGYVRQAVDKYIEMMFKADWDFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYC 158 (648) T ss_pred ------HHHHH--HHhcChHHHHHHHHHHHHHhhCcceEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcC Confidence 00000 00124666778888888888888776554321 111111 1 1222 45566777889999999 Q ss_pred eEEEEEEeCCCCceE----------------EEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcE Q lcl|Aclame:pro 135 VEWLHPYINRKGEFK----------------YVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDI 198 (479) Q Consensus 135 ~~~~~v~~d~~~~~~----------------i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i 198 (479) .+|+.+..+.+|.+- +..++|..+.+..++.. . +..|......+. ....|.++. T Consensus 159 NAYveiiRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g--~----~~~Y~y~~~g~~---~~~~~~~~d- 228 (648) T protein:vir:79 159 NVVIAKSRAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFG--M----IKGWQQEQEGQD---KPQKFKPED- 228 (648) T ss_pred CeEEEEEecCCCccchhhhhhhhccccceeeeEeecCceeEEEEcCCC--c----eeeeEEEecCCc---eeEEecCcc- Confidence 999999988887431 22244444443333211 0 001110000000 000111222 Q ss_pred EEEEEcCCccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 TYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLA 273 (479) Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~ 273 (479) |++++ +...|.|.+..+...+........... T Consensus 229 -------------------------------------------IIHik~~~~~d~~~GlSpi~~a~~aI~l~~aa~~~~~ 265 (648) T protein:vir:79 229 -------------------------------------------IVHIYYKREKGRAFGTPWLLPALDDIRALRQVEENVL 265 (648) T ss_pred -------------------------------------------EEEEccCCCCCCceeccHHHHHHHHHHHHHHHHHHHH Confidence 23332 234588888888777776666655666 Q ss_pred HHHHHhccceeeeecCCccc-hhhHH---HHhhcc--cceecCCCCcceeeecC--CCH--HHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 274 DNLDEIQEVIYVLKEYPGTS-LQEFI---DNIRYY--KSIKVDGGGGVDKLEIN--IPV--EAKKELLDRLEKNIIIFGQ 343 (479) Q Consensus 274 ~~~~~~~~p~l~~~g~~~~~-~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~i~~~s~ 343 (479) +.+...+.|..+++-..+.. .+... ...... .....+.+.+.+.+..+ ... -.+.+..+...+.|...-+ T Consensus 266 ~fF~NGa~P~gil~~~~~~~~~e~~k~~~e~~~~~~~~~~i~gg~v~~~~~~i~~~~s~~dlqfle~rk~~~~eIa~aFg 345 (648) T protein:vir:79 266 RLVYRNLHPLWHVKVGLEQEGFGAEEGEVDLVRGEVENMDVEGGMVTTERVNISSIASNQIIDAKEYLKHFEQRAFTVLG 345 (648) T ss_pred HHHhccCCccEEEEeCCCccchHHHHHHHHHHHHhcccccccccccccceeeccccCCHHHHHHHHHHHHHHHHHHHHhC Confidence 66777777776665221111 11111 111111 11111222222332221 122 2456666777888888888 Q ss_pred CCCCccccccc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccceeeEEeCCCCCCCHH Q lcl|Aclame:pro 344 GVNPESQNTGD---KSGVALKFLYSLLDLKCSKTEKKFKKAIREL-LWFVCEYLKISGNKSYDYKTVQITFNHSMIINEA 419 (479) Q Consensus 344 ~~~~~~~~~g~---~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~-~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~ 419 (479) +|++-.+..+. .++.+....+.. .+.-.+..+...+.+. .+.++. .......-.....+++.|++....|.. T Consensus 346 VPP~lLG~~~~ss~stae~~~~~~~~---~i~~l~~~i~~~le~~~~~~ll~-e~~l~~~l~~d~~ieF~~~~Llr~D~~ 421 (648) T protein:vir:79 346 VSELMMGRGGTASRSTGDNLSSDFKD---RIKALQKVMATFINEFMVKEILM-EGGFDPVLNPDDKVEFRFNEIDMDSKI 421 (648) T ss_pred CCHhHcccCCCccchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh-hhhccccccccceEEEeecccchhhHH Confidence 88765543322 233333222221 1222222222222211 111110 000000001113467888888888888 Q ss_pred HHHHHHHHH--hccCChHHHHHhCCC--CCCHHH--HHH--HHHHHHHHHHhhhhcc-------CCCCCCCcCCC Q lcl|Aclame:pro 420 EKIDMAAKS--TGIVSDETIVSNHPW--VEDVND--ELE--RLKKQEDTQKEYDDLI-------PNNQDGVIDET 479 (479) Q Consensus 420 e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~--El~--~i~~E~~~~~~~~~~~-------~~~~~~~~det 479 (479) ..++.+.++ +|++|...++++++. +.+... .+. -....+++.....+.. ....++...|+ T Consensus 422 ~~a~~~~~l~~~GilT~NEaR~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~~e~ 496 (648) T protein:vir:79 422 KLENQAVFLYEHNAISEDEMRELIGRDPVDDGEGRAKMHLQMVTIAQATALAALAPTPAGGSSASASGDKKKKAT 496 (648) T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCccccccccccchhccccccCCCCCCCCCCCCcccccccccc Confidence 888888775 689999999988754 222111 110 0000101000000000 00011111111 No 164 >protein:vir:6322 Length: 510 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877469;genbank:gi:33300841;uniprot:Q7Y2D5;genbank:GeneID:1482611 Probab=98.25 E-value=2.1e-06 Score=51.71 Aligned_cols=428 Identities=12% Similarity=0.022 Sum_probs=178.4 Q ss_pred HHHHHHHHHHHhhH-HHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhcc--C--- Q lcl|Aclame:pro 24 LVKVIEHYILKHRP-EKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGN--P--- 97 (479) Q Consensus 24 ~~~~i~~~~~~~~~-~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~--~--- 97 (479) +.+.+....++.+. ......+++++ +-+|+.-. ..+.. ......++.-+.+...++.+|+.|.+- | T Consensus 1 mk~~~~~~~~~lkR~~~e~~w~e~a~--~tlP~~~~----~~~~~--~~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~~ 72 (510) T protein:vir:63 1 MKTTAAMLWEKLRDGSVEQRAIEFAK--TTLPYLMV----DPMSG--SRGVVEHDFQSAGALLVNNLAAKLARSLFPTGI 72 (510) T ss_pred ChhHHHHHHHHHhccchHHHHHHHHH--hhccccCC----CCCCc--cccccCCCccchHHHHHHHHHHHHHhhhcCCCC Confidence 23333332222222 22233333443 11221100 00000 011112334455666777777766543 1 Q ss_pred --eeecCCch-------------hHHH--------HHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 98 --IVFNADDD-------------NLTK--------LLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIP 154 (479) Q Consensus 98 --~~~~~~~~-------------~~~~--------~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~ 154 (479) +++...++ ++.. +...+..++|.....++.++...+|.+.+++ ++++. +++.++ T Consensus 73 ~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Li~~G~a~l~~--~~~~~-~~~~~p 149 (510) T protein:vir:63 73 PFFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALLYR--DSDAA-TVVAWS 149 (510) T ss_pred cccccCCChHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEEE--cCCCc-EEEEEE Confidence 22322211 1222 2233456789999999999999999986655 55553 566666 Q ss_pred cceeEEEEcCCCCCceEEEEEEEeeec---------------ccCceEEEEEEEeCCcEEEEEEcC-Ccccccccccccc Q lcl|Aclame:pro 155 AEEAIPIWDSKRQRELVAFIRFYYIED---------------IDGNKIKRVEYYTENDITYFIERG-NSFIQEFLYDEYG 218 (479) Q Consensus 155 p~~~~~~~d~~~~~~~~~~i~~~~~~~---------------~~~~~~~~~~~y~~~~i~~~~~~~-~~~~~~~~~~~~~ 218 (479) -.++++ -.+.. ..+...++.++..- .+.+....+++|+. ++ ...+ +...... T Consensus 150 l~~y~v-~~d~~-G~vd~i~rr~~~t~~~l~e~~~~~~~~~~~~~~~~~~v~v~~~--V~--~~~~~~~~~~sv------ 217 (510) T protein:vir:63 150 LRSYAV-RRDAT-GRWMDIVLKQRYKSKDLDEEYKQDLMRAGRNLSGSGSVDLYTH--VQ--RKKGTAMEYAEL------ 217 (510) T ss_pred cceeEE-eeCCC-cCeeEEEeeeeccHHHHhHHhhhhhhccccccCCCcceEEEEE--EE--eecCCCceEEEE------ Confidence 555444 33333 34444454444320 01111222333331 11 1111 0000000 Q ss_pred ccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccc Q lcl|Aclame:pro 219 KMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTS 293 (479) Q Consensus 219 ~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~ 293 (479) .... ++.........+|..+|++.+. ++.+|+|-.++..+-+..+|...-...........|.+.+.-.+... T Consensus 218 -~~e~-dg~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a~~~~~lv~p~g~~~ 295 (510) T protein:vir:63 218 -YHEI-DGVRVGKEGRWPIHLCPYIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELESLEVLNLVDEAKGAV 295 (510) T ss_pred -EEEe-cCceeccccccccccCceeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCcccccc Confidence 0001 1111122233456667877664 34689999999999999999887777776666666654442111111 Q ss_pred hhhHHHHhhcccceecCCCCcceeeec--CCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 294 LQEFIDNIRYYKSIKVDGGGGVDKLEI--NIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKC 371 (479) Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~ 371 (479) ... ...... +.+......+++.+.. ..+.......++.++..|...-.. ++..-+....||+.++.+-....+.. T Consensus 296 ~~~-~~~~~~-g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~-~l~~~~~~rvTAtEV~~r~~E~~~~L 372 (510) T protein:vir:63 296 VDD-YQDAEM-GDYVPGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQAFMY-GANQRDAERVTAEEVRITAEEAENTL 372 (510) T ss_pred hhh-hccCCC-ceeecCCcccceeeecCcccchHHHHHHHHHHHHHHHHHHHh-hcccCCCCCcCHHHHHHHHHHHHHHh Confidence 111 111111 2232333445666553 345666677777777777654332 22222334568888776544433333 Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhcCCCccccceee---EEeCCCCCCCHH-HHHHH----HHHHhc---c---CChHH Q lcl|Aclame:pro 372 SK-TEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQ---ITFNHSMIINEA-EKIDM----AAKSTG---I---VSDET 436 (479) Q Consensus 372 ~~-~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~---i~f~~~~p~d~~-e~a~~----~~k~~g---~---is~et 436 (479) .- ..+.-.+.+.-+++..+.++...+..+.....+. |++-..+-+... +.+.. +..+.+ + +.... T Consensus 373 Gpv~~rl~~E~l~Pli~r~~~il~r~gl~p~p~~~~~~~~v~~is~Laraq~~~~l~~~~q~l~~~~~~aq~~~~id~d~ 452 (510) T protein:vir:63 373 GGTYSLLAENLQSPLAYVCLSEVDDALLQGLITKQHKPAIETGLPALSRSAAVQSMLNASQVIAGLAPIAQLDPRISLPK 452 (510) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhcccceecchhHHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHH Confidence 21 2222222233333333333333332222222222 233222222211 11111 111111 1 22233 Q ss_pred HHH----hCCCCC----CHHHHHHHHHHHHHHHHhhh-hccCCCCCCC--cCCC Q lcl|Aclame:pro 437 IVS----NHPWVE----DVNDELERLKKQEDTQKEYD-DLIPNNQDGV--IDET 479 (479) Q Consensus 437 ~~~----~l~~~~----d~~~El~~i~~E~~~~~~~~-~~~~~~~~~~--~det 479 (479) +++ .+|... -.++|++++.+++++++... +.......|. ..-| T Consensus 453 ~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~qq~~~~~~~~~~~~~~a~~~~~~ 506 (510) T protein:vir:63 453 MMDTIWAAFSVDTSQFYKSADELQAEAEQQRQQAAQAQAAQETLLEGASDMTNA 506 (510) T ss_pred HHHHHHHHhCCChhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc Confidence 333 333211 13566666654432211111 1110001111 1111 No 165 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=98.24 E-value=2.2e-06 Score=51.64 Aligned_cols=378 Identities=9% Similarity=-0.018 Sum_probs=182.3 Q ss_pred HHHHHHHHHHHH---hhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCee Q lcl|Aclame:pro 23 NLVKVIEHYILK---HRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIV 99 (479) Q Consensus 23 ~~~~~i~~~~~~---~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~ 99 (479) -|.+.+-..... ....-......+|-|........ . ....-+..+.....|+.+++-+..-|++ T Consensus 1 m~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------v---~~~~al~~~~v~~~i~~Ia~~ia~l~~~ 67 (416) T protein:vir:12 1 MLLERMFEKRSGSSDHEDGFNNILLNMFGGRKTASGER----------V---SESNSLVQPDIFACVNVLSDDIAKLPIH 67 (416) T ss_pred CccchhcccccCccccCccchhHHHHhhcCcccccCce----------e---chhhhhccHHHHHHHHHHHHhhhhCceE Confidence 111111000000 00001223344444332110000 0 0001122344456677777777777876 Q ss_pred ec--CCc--hh--HHHHHHHHHh--c---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCC Q lcl|Aclame:pro 100 FN--ADD--DN--LTKLLNDLLG--E---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQ 167 (479) Q Consensus 100 ~~--~~~--~~--~~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~ 167 (479) +- .++ +. ...+...+.. | ....+...++...+.+|.+|+.+..+..|.+ .+..++|..+.++.++... T Consensus 68 ~~~~~~~~~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~ 147 (416) T protein:vir:12 68 TYKRTDGGIERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTTG 147 (416) T ss_pred EEEecCCccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCCc Confidence 41 111 11 1122333321 3 2345667788899999999999999888876 5888999999887665432 Q ss_pred CceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecC Q lcl|Aclame:pro 168 RELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN 247 (479) Q Consensus 168 ~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n 247 (479) . .+|.. ..+|..+ .+....+.+++.- + .+ T Consensus 148 -~-----~~~~~-~~~g~~~----~~~~~eiih~~~~------------------------------------~----~~ 176 (416) T protein:vir:12 148 -M-----LWYQT-VLNGKAI----ELYDYEVLHFKGL------------------------------------S----TD 176 (416) T ss_pred -E-----EEEEE-ecCCeEE----EecCccEEEecCc------------------------------------C----CC Confidence 1 12222 1223211 2233333333110 0 01 Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH--------HhhcccceecCCCCcceeee Q lcl|Aclame:pro 248 NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID--------NIRYYKSIKVDGGGGVDKLE 319 (479) Q Consensus 248 ~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 319 (479) ...|.|.+..+...++..........+.+...+.|-.++..... ..++... ....++++.++++.+++.+. T Consensus 177 ~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~-~~~e~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~ 255 (416) T protein:vir:12 177 GIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPAF-LDEKPKENVRKEWKRVNKVENIAIIDYGLEYQSIS 255 (416) T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCC-CCHHHHHHHHHHHHHHhcCCCeeecCCCceEEEcc Confidence 23577888888777777666666666667777777766653222 2222111 12345556677666666666 Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 320 INIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNK 399 (479) Q Consensus 320 ~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~ 399 (479) .......+.+..+.....|...-+.|+.-.+.....+...++... ...+...|.-.++.+...+...-.. T Consensus 256 ~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~----------~~f~~~~l~P~~~~ie~~l~~~l~~ 325 (416) T protein:vir:12 256 MPLQEAQFVESMKFNKAQISMIYKVPLHKLNELDKATFSNIEHQS----------IEYVRNTLQPWIVNFEQELNVKLFL 325 (416) T ss_pred CChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCccCCCcccHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcC Confidence 555555667777888888888878877655443222222211111 1122333333333333332221111 Q ss_pred cc---ccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHH--------HHHHHHHHHHHHHhh Q lcl|Aclame:pro 400 SY---DYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVND--------ELERLKKQEDTQKEY 464 (479) Q Consensus 400 ~~---~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~--------El~~i~~E~~~~~~~ 464 (479) .. ....+++.+...+..|..+.++++.++ .|+++.-.++++++. +++-+. .++.+.+.+...... T Consensus 326 ~~~~~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~n~~~~~~~~~~~~~~~~~ 405 (416) T protein:vir:12 326 DHDQKSGHYVKFNIDSELRGDSKTQAEYLKTLHETGVLNKDEIRELLERNPIENGDKYISSLNYVFLDFLEEYQRLKAGG 405 (416) T ss_pred chhhcCCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccchhhcccccc Confidence 11 112355666677888999999998886 578999999888754 222111 111111111110000 Q ss_pred hhccCCCCCCCc Q lcl|Aclame:pro 465 DDLIPNNQDGVI 476 (479) Q Consensus 465 ~~~~~~~~~~~~ 476 (479) +.-..+.++.+ T Consensus 406 -~~~gge~~~~g 416 (416) T protein:vir:12 406 -AMKGGDNKNEG 416 (416) T ss_pred -ccCCCCCcCCC Confidence 00011111111 No 166 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=98.22 E-value=2.4e-06 Score=51.41 Aligned_cols=381 Identities=11% Similarity=0.016 Sum_probs=164.8 Q ss_pred cChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCe Q lcl|Aclame:pro 19 ESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPI 98 (479) Q Consensus 19 ~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~ 98 (479) ....++...++..+ +.++-.....-.+......... ... ...+.-+..+-....|+.+|+-+..-|+ T Consensus 1 ~~~~~~~~~~k~~~----------~~~~~~~~~~~~~~~~~~~~~~--~~~-v~~~~a~~~~~V~~ci~~ia~~ia~lp~ 67 (409) T protein:vir:96 1 MAKENIVTRIKKKL----------IDNWIDQSASKLYDFSPWKNKS--FWG-VINNTLETNETIFSAITKLSNSMASLPL 67 (409) T ss_pred CccccchhhhhhHH----------hhhhhccccccccccccccCcc--ccc-cchhhHhhhHHHHHHHHHHHHhhhhCce Confidence 22222332222111 1111111000000000000000 000 0000011223344556667776666677 Q ss_pred eecCCchhH-HHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceE Q lcl|Aclame:pro 99 VFNADDDNL-TKLLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELV 171 (479) Q Consensus 99 ~~~~~~~~~-~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~ 171 (479) .+--..+.. ..+...+. -|. -..+...++..++.+|.+|+.+..+.+|.+ .+..++|..+.++.++... . T Consensus 68 ~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~-~-- 144 (409) T protein:vir:96 68 KMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR-E-- 144 (409) T ss_pred EEeecccccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCc-E-- Confidence 653222211 12233332 132 334556778889999999999999888875 5788899998887765421 1 Q ss_pred EEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCC Q lcl|Aclame:pro 172 AFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKC 251 (479) Q Consensus 172 ~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g 251 (479) .+|......+.. ..+.++.+.+++.- ++ .+...| T Consensus 145 ---~~y~~~~~~g~~----~~~~~~evih~r~~------------------------------~~---------~~~~~G 178 (409) T protein:vir:96 145 ---LYYSIHAATGNK----LIVHNMDMLHFKHI------------------------------VA---------SNMVQG 178 (409) T ss_pred ---EEEEEEcCCceE----EEEccccEEEeCCC------------------------------CC---------CCcccc Confidence 123332233321 12333333333110 00 012347 Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH----Hh-----hcccceecCCCCcceeeecCC Q lcl|Aclame:pro 252 VSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID----NI-----RYYKSIKVDGGGGVDKLEINI 322 (479) Q Consensus 252 ~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~ 322 (479) .|.+..+...++..+..... ........+-+++.. +....++... .+ ..++++.++++.+++.+..+. T Consensus 179 ~s~l~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~-~~~l~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~ 255 (409) T protein:vir:96 179 ISPIDVLKNTTDFDNAVRTF--NLTEMQKPDSFMLKY-GSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKY 255 (409) T ss_pred ccHHHHHHHHHHHHHHHHHH--HHHhcCCCceeEEec-CCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCCh Confidence 77777666665544332211 112222222223221 1111122111 11 123455666666666665554 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc- Q lcl|Aclame:pro 323 PVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSY- 401 (479) Q Consensus 323 ~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~- 401 (479) ....+.+..+...+.|+..-++|+.-.+..++.+...++... ...+...|.-+++.|...+...--... T Consensus 256 ~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~s~~e~~~----------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~ 325 (409) T protein:vir:96 256 VSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELN----------RFYLQHTLLPIVKQYEEEFNRKLLTKTD 325 (409) T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhcCCccc Confidence 555667777778888888888886655443322222222111 111222233333322222221110011 Q ss_pred --ccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHH-----HHHHHHHHHHHHHhhhhccCC Q lcl|Aclame:pro 402 --DYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVND-----ELERLKKQEDTQKEYDDLIPN 470 (479) Q Consensus 402 --~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~-----El~~i~~E~~~~~~~~~~~~~ 470 (479) ....+++.....+-.|..+.++++.++ +|+++.-.++++++.-. +-+. -+..+.. ....+.... T Consensus 326 ~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~-----~~~~~~~~~ 400 (409) T protein:vir:96 326 REKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDT-----PLELRKSLK 400 (409) T ss_pred ccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcceeeeccccccccc-----chhhccccc Confidence 112344444566667899999999887 57899999988875422 1110 0111100 000011111 Q ss_pred CCCCCcCCC Q lcl|Aclame:pro 471 NQDGVIDET 479 (479) Q Consensus 471 ~~~~~~det 479 (479) .-+..++|+ T Consensus 401 gG~~n~~e~ 409 (409) T protein:vir:96 401 GGDKNVNES 409 (409) T ss_pred CCCCCcCCC Confidence 122233333 No 167 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=98.19 E-value=2.9e-06 Score=50.92 Aligned_cols=375 Identities=9% Similarity=-0.052 Sum_probs=173.2 Q ss_pred HHHH-HhccCCccccccccccccc-cccccccc--CcceeecchHHHHHHHHHhhhhccCeee--cCCch--hH-HHHHH Q lcl|Aclame:pro 42 QGEE-YYYGNTDVNNKRRYYLLDG-AKVDDFTK--VNNKAINNYHKLLVDQKVGYSVGNPIVF--NADDD--NL-TKLLN 112 (479) Q Consensus 42 ~~~~-yy~g~~~~~~~~~~~~~~~-~~~~~~~~--~~~ri~~n~~~~iv~~~a~~l~g~~~~~--~~~~~--~~-~~~~~ 112 (479) ++.+ .++-+.............. +....... ..+-+...-....|+.+|+-+.+-|+.+ ..++. .. ..+.. T Consensus 1 m~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~l~~ 80 (409) T protein:vir:10 1 MLFRKGFKNQSQEISIDDKKILEWLGINPSETYVNGKSCLKQATVFGCIRILSDNISKLPIKIYQKKDGIKRVPDHYLEY 80 (409) T ss_pred CcccccccCcCCCCCCChHHHHHHhcCCcCcceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCeeeccCchHHH Confidence 1000 0000000000000000000 00000000 0001122334456677777777777765 21111 11 11222 Q ss_pred HHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCce Q lcl|Aclame:pro 113 DLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNK 186 (479) Q Consensus 113 ~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~ 186 (479) .+. -| ....+...++...+.+|.+|+.+..+..|.+ .+..++|..+.++.++........-+. |......+. T Consensus 81 lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~~~-y~~~~~~g~- 158 (409) T protein:vir:10 81 LLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENNVW-YLYTDDLGQ- 158 (409) T ss_pred HHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCccccccceEE-EEEEeCCce- Confidence 222 13 2345667788899999999999999988876 588899999988776542211111111 111111111 Q ss_pred EEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHH Q lcl|Aclame:pro 187 IKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYD 266 (479) Q Consensus 187 ~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~ 266 (479) ...+..+.+.+++.- + .+...|.|.++.+...++... T Consensus 159 ---~~~~~~~evih~r~~------------------------------~----------~d~~~G~s~i~~~~~~i~~~~ 195 (409) T protein:vir:10 159 ---RHKFMSDEILHFKGL------------------------------T----------ADGLAGLSVIELLNHLIENGK 195 (409) T ss_pred ---eEEeccccEEEecCc------------------------------C----------CCCcccccHHHHHHHHHHHHH Confidence 112223333332100 0 012347787777777777766 Q ss_pred HHHHHHHHHHHHhccceeeeecCCccchhhHHH----Hh--------hcccceecCCCCcceeeecCCCHHHHHHHHHHH Q lcl|Aclame:pro 267 NNISTLADNLDEIQEVIYVLKEYPGTSLQEFID----NI--------RYYKSIKVDGGGGVDKLEINIPVEAKKELLDRL 334 (479) Q Consensus 267 ~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 334 (479) .........+...+.|-.+++.... ..++... .+ ..++++.++++.+.+.+..+.....+.+..+.. T Consensus 196 ~~~~~~~~~f~ng~~~~gil~~~~~-l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 274 (409) T protein:vir:10 196 SSETYLNNFFKNGLQVKGLVQYAGD-LNPEAEEVFKENFERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLT 274 (409) T ss_pred HHHHHHHHHHhccCCCcEEEEcCCC-CCHHHHHHHHHHHHHHhccccccCCceecCCCceEEEccCChhhHHHHHHHHHH Confidence 6655566666666777666553221 1122111 11 123456666666666665555555677777888 Q ss_pred HHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc-cccceeeEEeC Q lcl|Aclame:pro 335 EKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGN--KS-YDYKTVQITFN 411 (479) Q Consensus 335 ~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~--~~-~~~~~i~i~f~ 411 (479) .+.|...-++|+.-.+..+..++..++... ...+...|.-.++.|...+...-- .. .....+++.+. T Consensus 275 ~~~Ia~~fgVPp~~lg~~~~~~~~~~e~~~----------~~f~~~~l~P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~ 344 (409) T protein:vir:10 275 IRQIASVFGVKMHQLNDLDRATHSNITEQN----------REFYIDTLQSILNMYELEINYKLFLISEIKNGFYSKFNVD 344 (409) T ss_pred HHHHHHHhCCCHHHcCCCCCCccccHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcCchhccCCcEEEEech Confidence 888888888887655433322322222111 112233333333333332222110 00 11123555566 Q ss_pred CCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCC Q lcl|Aclame:pro 412 HSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDE 478 (479) Q Consensus 412 ~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~de 478 (479) ..+-.|..+.++++.++ +|+++.-.++++++.- ++-+ ++ .+... .... +....+..+++++ T Consensus 345 ~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~ggD-~~-~~~~n---~~~~-~~~~~~~~kgGe~ 409 (409) T protein:vir:10 345 TILRADIKTRYESYKEAIQNGFKTPNEIRELEEDEPLEGGD-VL-LINGN---MIPV-KMAGEQYSKGGEK 409 (409) T ss_pred hhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcC-ee-eeccC---ccch-hhccccccccCCC Confidence 66778999999988887 6899999988887542 2111 10 00000 0000 0001111122333 No 168 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=98.16 E-value=3.4e-06 Score=50.58 Aligned_cols=391 Identities=8% Similarity=-0.020 Sum_probs=169.1 Q ss_pred HHHHHHHHHHHhhHH---HHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeee Q lcl|Aclame:pro 24 LVKVIEHYILKHRPE---KYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVF 100 (479) Q Consensus 24 ~~~~i~~~~~~~~~~---~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~ 100 (479) +......-...++.. +-.-....+.+-.+... .....+..... ..-+.+.=....|+.+++-+.+-|+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~g~~v~~---~~al~~~~V~~~v~~Ia~~iA~lp~~~ 73 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFA----GAWQQGVKADP---EAVLSFHAVFACISLISQDIAKMRLRL 73 (454) T ss_pred CCCccccCcccccccccccchhhhhhhhhhhhhhc----chhhcCcccCh---HHhhccHHHHHHHHHHHHhhccCceEE Confidence 000000000000000 00000000000000000 00000000000 000111222335677777676777764 Q ss_pred c---CCc--hh-HHHHHHHHHh--cC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCC Q lcl|Aclame:pro 101 N---ADD--DN-LTKLLNDLLG--EE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQR 168 (479) Q Consensus 101 ~---~~~--~~-~~~~~~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~ 168 (479) - .+. +. ....+..+.. |. ...+...++..++.+|.+|+.+-.+.+|++ .+..++|..+.++.++.. T Consensus 74 ~~~~~~g~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g-- 151 (454) T protein:vir:93 74 MQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDG-- 151 (454) T ss_pred EEeccCCccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEEcCCC-- Confidence 1 111 11 1112222221 32 345667778899999999999999888886 688899999988776532 Q ss_pred ceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCC Q lcl|Aclame:pro 169 ELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNN 248 (479) Q Consensus 169 ~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~ 248 (479) ++. |...............+..+.+.++.... ..+. T Consensus 152 ~~~-----y~~~~~~~~~~~~~~~~~~~eViH~k~~~---------------------------------------~~~~ 187 (454) T protein:vir:93 152 EVF-----YRITPDRNCGITEAVTVPAREVIHDRFNC---------------------------------------FFHP 187 (454) T ss_pred cEE-----EEEEeccccccceeEEecCcceEEeccCC---------------------------------------CCCC Confidence 221 22111111111111223333444332100 0112 Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHh-----------hcccceecCCCCccee Q lcl|Aclame:pro 249 EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNI-----------RYYKSIKVDGGGGVDK 317 (479) Q Consensus 249 ~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 317 (479) ..|.|.+..+...+.............+...+.|-.+++-.. ...++....+ ..++++.++++.+++. T Consensus 188 ~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~ 266 (454) T protein:vir:93 188 LIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG-SITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNP 266 (454) T ss_pred ceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCC-CCCHHHHHHHHHHHHHHhcccccCCceeccCCceEEE Confidence 357787777777666665555555555566666655554322 1112211111 1344566666666666 Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 318 LEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG 397 (479) Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~ 397 (479) +........+.+..+..+..|...-++|+.-.+.....+...++.... ..+...|.-+++.+...+...- T Consensus 267 l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~----------~f~~~~l~P~~~~ie~~ln~~L 336 (454) T protein:vir:93 267 TTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ----------QYYSQCLQTLIESIELLLDEAL 336 (454) T ss_pred cccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcchhHHHHHH----------HHHHHHHHHHHHHHHHHHHHhh Confidence 665555556677777788888888788875544332222222211111 1111122222222211111110 Q ss_pred CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHH--------HHHHHHHHHHHHHHhh- Q lcl|Aclame:pro 398 NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVN--------DELERLKKQEDTQKEY- 464 (479) Q Consensus 398 ~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~--------~El~~i~~E~~~~~~~- 464 (479) ... ....+++.+...+..|..+.++.+.++ .|+++.-.++++++.-. +-+ .-++.+.+....+.+. T Consensus 337 ~~~-~~~~~~f~~~~ll~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (454) T protein:vir:93 337 ETG-ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFA 415 (454) T ss_pred cCC-CCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccCccchHhhhccCcccCCCC Confidence 001 123456666777788999999988876 67999998888765422 111 0122221111110000 Q ss_pred hhcc----C---CCCCCCcCCC Q lcl|Aclame:pro 465 DDLI----P---NNQDGVIDET 479 (479) Q Consensus 465 ~~~~----~---~~~~~~~det 479 (479) .+.. + ...+++.+++ T Consensus 416 ~~~~~~~~~~~~~~~d~~~~~~ 437 (454) T protein:vir:93 416 SSGKTASVPQAVAASDGNKAIT 437 (454) T ss_pred CCccCCCCCCCCCCCCCCCCcc Confidence 0000 0 0011111111 No 169 >protein:vir:78696 Length: 542 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285446;genbank:gi:148724480;genbank:GeneID:5220167 Probab=98.14 E-value=3.8e-06 Score=50.27 Aligned_cols=424 Identities=10% Similarity=0.040 Sum_probs=183.9 Q ss_pred hccChHHHHHHHHHHHHHhhHH---HHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhh Q lcl|Aclame:pro 17 KKESTINLVKVIEHYILKHRPE---KYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYS 93 (479) Q Consensus 17 ~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l 93 (479) -+.. ..+..+. +..+|.. +++.+.+|.. |++-.. +. ........++.-+.+...++.+|+.| T Consensus 1 mk~~---a~~r~~~-l~~~R~~~e~~w~e~~~y~l-----P~~~~~---~~---~~~~~~~~~~~dstg~~a~~~Laa~l 65 (542) T protein:vir:78 1 MKGL---AQARYSA-MRADREDFLDMARRCAALTL-----PYLLTE---DG---HASGGRLQQPYQSLGSKGVNALSSKL 65 (542) T ss_pred ChhH---HHHHHHH-HHHHhhHHHHHHHHHHHHhc-----cccCCC---CC---CcccccccccccchHHHHHHHHHHHH Confidence 0000 1122222 2223333 3334444432 211100 00 00011122344566777788888777 Q ss_pred hcc------C-eeecCCch--------------hHHH--------HHHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCC Q lcl|Aclame:pro 94 VGN------P-IVFNADDD--------------NLTK--------LLNDLLGEEFDDTITELYLNASNKGVEWLHPYINR 144 (479) Q Consensus 94 ~g~------~-~~~~~~~~--------------~~~~--------~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~ 144 (479) ++- | +++...+. ++.. ....+..++|.....++.++...+|.+++++ ++ T Consensus 66 ~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~--~~ 143 (542) T protein:vir:78 66 MLSLFPIQTSFFKLQINDAEIASVPELTPEVRSEIDMNLSKMEKMVMQQIAESSDRVQLTAAMKHLIVTGNVLVFA--GK 143 (542) T ss_pred HHhhcCCCCccccccCCHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEEe--cC Confidence 543 2 22332211 1211 1233456899999999999999999997654 54 Q ss_pred CCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeeccc-------------------CceEEEEEE----EeCCcEEEE Q lcl|Aclame:pro 145 KGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDID-------------------GNKIKRVEY----YTENDITYF 201 (479) Q Consensus 145 ~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~-------------------~~~~~~~~~----y~~~~i~~~ 201 (479) ++ ++.++-.++++ -.+. ..++..++|.++..-.+ ++....+++ +.......| T Consensus 144 ~~---~~~~pl~~y~v-~~d~-~G~vd~v~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~~v~~~v~pr~~~~~~ 218 (542) T protein:vir:78 144 KT---LKVYPLDRYVI-ERDG-DGNVIEIITRELVDRSLLPAEFQKQSLLEGKDSNAVGEDGPKFGVAQGKGGRNDAEVF 218 (542) T ss_pred CC---ceEEecceeEE-eeCC-CCCeEEEeeeeecCHHHHHHhhccccCchHHHhhccccCCCeEEEEEEeecccCCccc Confidence 43 45555555443 3333 24455556555543110 000011111 111111111 Q ss_pred EEcCCccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 202 IERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNL 276 (479) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~ 276 (479) ......... ...................+|..+|++.+. .+.+|+|-.++..+-+..+|...-...... T Consensus 219 ~~~~~~~~~------~s~~~e~~g~~v~~~~~e~g~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~ 292 (542) T protein:vir:78 219 TCCKLVDGQ------HRWHQECDGKEIKGSRSSSPLKHSPWLPLRFNVVDGESYGRGRVEEFFGDLSSLDALTRSLIEGS 292 (542) T ss_pred cccccCCCe------EEEEEEeccccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHH Confidence 111000000 000000110000011233467777877654 346899999999999999999999999999 Q ss_pred HHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeee--cCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc Q lcl|Aclame:pro 277 DEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLE--INIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD 354 (479) Q Consensus 277 ~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~ 354 (479) +....|.+.+.-.+....... .....+ .+.....++++.+. ...+.......++.++..|......-. .-+... T Consensus 293 ~~a~~pp~lv~~~g~~~~~~~-~~~~~g-~iv~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~aFl~~~--~~d~~r 368 (542) T protein:vir:78 293 AAAAKVVFMVSPSATTKPQSL-ARAGTG-AIIQGRAEDVSVVQANKGADFRTVQEMIRDLSQRISDAFLILN--VRQSER 368 (542) T ss_pred HHHhcCceeeccccccchhhc-ccCCCc-eeecCCccceeeeecccccchhHHHHHHHHHHHHHHHHhcccc--cCCccc Confidence 999999876643221111111 111122 23334445565554 334566677778888777755433221 122334 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhcCCC-ccccceeeEEeCCCCCCC-HHHHHHH Q lcl|Aclame:pro 355 KSGVALKFLYSLLDLKCSKTEKKFKKAIREL--------LWFVCEYLKISGNK-SYDYKTVQITFNHSMIIN-EAEKIDM 424 (479) Q Consensus 355 ~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~--------~~li~~~~~~~~~~-~~~~~~i~i~f~~~~p~d-~~e~a~~ 424 (479) .||+.+..+... +...++..+.++ ++-++.++...+.. ..+..-+++.+.-++..- ..+.++. T Consensus 369 vTAtEV~~r~~E-------~~~~LG~v~~rl~~E~L~Pli~R~~~il~r~g~lP~~p~~lv~~~~~s~La~~~r~~~~~~ 441 (542) T protein:vir:78 369 TTATEVREVQME-------LDRQLSGIYGSLTVELLTPYLNRKLHLMQRSKQLPSLPKGLVMPTVVAGLGGVGRGEDRAA 441 (542) T ss_pred ccHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhceeeeeechHHHHHHHHHHHH Confidence 688887664433 333344333322 22222333333322 222233566666555321 1111222 Q ss_pred H----HHHhcc---------CChHHHHHhC---CCCC-----CHHHHHHHHHHHHHHHHhhhhc---c------------ Q lcl|Aclame:pro 425 A----AKSTGI---------VSDETIVSNH---PWVE-----DVNDELERLKKQEDTQKEYDDL---I------------ 468 (479) Q Consensus 425 ~----~k~~g~---------is~et~~~~l---~~~~-----d~~~El~~i~~E~~~~~~~~~~---~------------ 468 (479) + +.++.+ +....++..+ -+++ ..++|+++..++.+++...... . T Consensus 442 l~~~~~~i~~~~~p~~l~~~id~d~~~~~~a~~~Gvp~~~i~~s~e~~~~~~~q~q~~~~~~al~~~a~~~a~~~~~~~~ 521 (542) T protein:vir:78 442 LIEFMQTVGQAMGPEALQQFIDPTEFLKRLAAASGIDTLNLVKSPETMANEAQQAQQQQMTASLMGQAGQLAKSPIGEKM 521 (542) T ss_pred HHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHcCCCHhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccch Confidence 1 111112 2222333221 1122 1245555554443322111100 0 Q ss_pred ------CCCCCCCcCCC Q lcl|Aclame:pro 469 ------PNNQDGVIDET 479 (479) Q Consensus 469 ------~~~~~~~~det 479 (479) .++..+.+-+| T Consensus 522 ~~~~~a~~~~~~~~~~~ 538 (542) T protein:vir:78 522 MQQINAPGQEAPAGPQT 538 (542) T ss_pred hhhcCCCCcCCCCCCcc Confidence 01111122222 No 170 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=98.13 E-value=3.9e-06 Score=50.24 Aligned_cols=382 Identities=11% Similarity=-0.042 Sum_probs=177.2 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecC Q lcl|Aclame:pro 23 NLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNA 102 (479) Q Consensus 23 ~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~ 102 (479) -+.+.+-+............+...+-+....... .... ...-+.++-....|+.+|+-+.+-|+++-. T Consensus 1 ~~f~~~f~r~~~~~~~~~~~~~~~~~~~~~~~~g---------~~v~---~~~~l~~~~v~~~i~~Ia~~iA~~p~~~~~ 68 (413) T protein:vir:48 1 MFFSGLFQRKSDAPVTTPAELAEAIGLSYDTYTG---------KRIS---SQRAMRLTAVYSCVRVLAESVGMLPCSLYK 68 (413) T ss_pred CccchhhccCccCCccchHHHHHhhhcCcccccC---------ceec---hhhhhccHHHHHHHHHHHHhhhhCceEEEE Confidence 0111110000000010111112222211100000 0000 000012334455677777777777776421 Q ss_pred ---Cc--hhHH-HHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCce Q lcl|Aclame:pro 103 ---DD--DNLT-KLLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQREL 170 (479) Q Consensus 103 ---~~--~~~~-~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~ 170 (479) +. +..+ .+...+. -| ....+...+....+.+|.+|+.+..+ .|++ .+..++|..+.+..+... .+ T Consensus 69 ~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~--~~ 145 (413) T protein:vir:48 69 ISGTLKTRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA-LGEVVELLPIDPGCVEPKLNSQW--QP 145 (413) T ss_pred ecCCcceeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC-CCcEEEEEEEcCceEEEEEcCCc--eE Confidence 11 1111 1222221 12 24456677888999999999998876 4665 577899998888776532 22 Q ss_pred EEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCC Q lcl|Aclame:pro 171 VAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEK 250 (479) Q Consensus 171 ~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~ 250 (479) . |.....+|. ...|.++.+.+++.- . .+... T Consensus 146 ~-----y~~~~~~g~----~~~~~~~evih~~~~-------------------------------~---------~d~~~ 176 (413) T protein:vir:48 146 V-----YQVTFPDGS----VDVLTQDEIWHVRTL-------------------------------T---------LDGLV 176 (413) T ss_pred E-----EEEEecCce----EEEEccccEEEecCc-------------------------------C---------CCCcc Confidence 1 222222222 122444444443210 0 01235 Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchh---hHHHHh--------hcccceecCCCCcceeee Q lcl|Aclame:pro 251 CVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQ---EFIDNI--------RYYKSIKVDGGGGVDKLE 319 (479) Q Consensus 251 g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~ 319 (479) |.|.+..+...++............+...+.|-.+++.......+ .....+ ..++++.++++.+++.+. T Consensus 177 G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~~~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~ 256 (413) T protein:vir:48 177 GLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKLTPDAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMA 256 (413) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEecc Confidence 778788777777766666555555566667676665543222211 111111 123345566665555555 Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-- Q lcl|Aclame:pro 320 INIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG-- 397 (479) Q Consensus 320 ~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~-- 397 (479) .+.....+.+..+.....|+..-+.|+.-.+..+..+...++... ...+...|.-+++.+...+...- T Consensus 257 ~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~----------~~f~~~~i~P~~~~ie~~l~~~L~~ 326 (413) T protein:vir:48 257 LNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELG----------LGFINYSLVPYLTRIEQRINTGLVR 326 (413) T ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCCcccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhccC Confidence 444455567777788888888878876544433222221111111 11122223333332322222111 Q ss_pred CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHH-HHHHHHHHHH-HHHHhhhhccCCCCC Q lcl|Aclame:pro 398 NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVN-DELERLKKQE-DTQKEYDDLIPNNQD 473 (479) Q Consensus 398 ~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~-~El~~i~~E~-~~~~~~~~~~~~~~~ 473 (479) ........+++.+...+-.|..+.++++.++ +|+++.-.++++++.-.-+. .++ .+.... ......++..+..++ T Consensus 327 ~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ggD~~-~~~~n~~~~~~~~~~~~~~~~~ 405 (413) T protein:vir:48 327 ESKQGKFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVY-LTPMNMTTSPSAGDDNGKKKES 405 (413) T ss_pred ccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee-eccccccccccccccCCCCCCC Confidence 1111122345555666667899999999886 57999998888876422110 010 000000 011112233344555 Q ss_pred CCcCCC Q lcl|Aclame:pro 474 GVIDET 479 (479) Q Consensus 474 ~~~det 479 (479) +..||| T Consensus 406 ~~~~~~ 411 (413) T protein:vir:48 406 GDADKT 411 (413) T ss_pred CCcccc Confidence 666666 No 171 >protein:vir:103330 Length: 517 # NCBI annotation: head portal-like protein # Family: family:all:481 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039666;genbank:gi:125999995;genbank:GeneID:4818406 Probab=98.12 E-value=4.2e-06 Score=50.05 Aligned_cols=425 Identities=9% Similarity=0.034 Sum_probs=178.8 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHH Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLV 86 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 86 (479) |+| .+ ...-..+.+..+.+ .++|.......+++++- -.|++-. .+ .......++.-+-+...+ T Consensus 1 ~~~-----~~-~~e~~~l~~r~~~L-k~~R~~~e~~w~e~~~~--~lP~~~~---~~-----~~~~~~~~~~dstg~~a~ 63 (517) T protein:vir:10 1 MDM-----RF-AGNKSKIPKLYEQL-VGKRSPFLSRAENYSRF--TLPYLMA---DV-----NDDLSSQNAWQDDGASAT 63 (517) T ss_pred Ccc-----cc-cccHHHHHHHHHHH-HHhhhHHHHHHHHHHHH--hcccccc---CC-----CCCccccccccchHHHHH Confidence 221 11 12222345555443 33344433334444431 1121100 00 001122344556667777 Q ss_pred HHHHhhhhcc--C-----eeecCCch-------------hHHHH--------HHHHHhcCHHHHHHHHHHHHHhCCeEEE Q lcl|Aclame:pro 87 DQKVGYSVGN--P-----IVFNADDD-------------NLTKL--------LNDLLGEEFDDTITELYLNASNKGVEWL 138 (479) Q Consensus 87 ~~~a~~l~g~--~-----~~~~~~~~-------------~~~~~--------~~~~~~n~~~~~~~~~~~~~~~~G~~~~ 138 (479) +.+|+.|.+- | +++...++ ++... ...+..++|.....++.++...+|.+++ T Consensus 64 ~~LAa~l~~~ltpp~~~WF~l~~~~~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l 143 (517) T protein:vir:10 64 NFLSNKLSQVLFPAQRSFFRIDLTPEGIKQLDNEAMTQSTAQKLLSDVEKAAMLYGESLQFRPAVVEAFKHLIVTGNVMM 143 (517) T ss_pred HHHHHHHHHhhcCCCCccccccCCHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEE Confidence 7777776543 1 23332221 12222 2334457999999999999999999875 Q ss_pred EEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeeccc-----C------------ceEEEEEEEeCCcEEEE Q lcl|Aclame:pro 139 HPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDID-----G------------NKIKRVEYYTENDITYF 201 (479) Q Consensus 139 ~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~-----~------------~~~~~~~~y~~~~i~~~ 201 (479) + .++ +...++.++-.++++--| .. .++...++..+..-.. + +....+++|+. ++ T Consensus 144 y--~~~-~~~~~~~~pl~~y~v~~d-~~-G~v~~ivrr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~-- 214 (517) T protein:vir:10 144 Y--HPD-KTSPIQAVPLHHYCVRRD-NN-GTVLDIVFLQEKALETFEPSIRMAIQASRKGKQYKDKDNVKLYTH--AK-- 214 (517) T ss_pred E--EeC-CCCcEEEEEcCeEEEeeC-CC-cCeEEEEeeeeccHHHHHHHhhhhcchhhhhhccCCcCceEEEEE--EE-- Confidence 4 443 333566666555444333 33 3444445443332000 0 11112333331 00 Q ss_pred EEcCCccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 202 IERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNL 276 (479) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~ 276 (479) ....+.+. ..... ++.........+|..+|++.+. ++.+|+|-.++..+-+..+|.+.-...... T Consensus 215 ~~~~~~~~---------~~~~~-d~~~~~~~s~y~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~~~~~ 284 (517) T protein:vir:10 215 RTKDGKYL---------IRQSA-DDVPVGKESTVTEDKSPFLILTWKRSYGEDYGRGMAEDHAGAFFVIQFLSEALARGM 284 (517) T ss_pred EeCCCceE---------EEEEe-CceeeccccccccccCCeeeeeeeecCCCCcccchHHHhHHHHHHHHHHHHHHHHHH Confidence 00011110 00011 1111122223346677777654 356899999999999999998877777777 Q ss_pred HHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeeec--CCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc Q lcl|Aclame:pro 277 DEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEI--NIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD 354 (479) Q Consensus 277 ~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~ 354 (479) .....|.+.+.-.+....... ..... +.+.....+++..+.. ..+.......++.++..|...-....+...+... T Consensus 285 ~~a~~~~~lv~~~~~~~~~~l-~~~~~-g~~~~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~~~~~r 362 (517) T protein:vir:10 285 ALMADVKYLVKPGSYTDINQF-VEGGS-GAVLHGVEGDIHIVQLGKYADYTPIQAVLNDYRQRIGRVFMMEAMTRRDAER 362 (517) T ss_pred HHhccCCcccCcccccchhhc-cCCCc-cccccCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhhhccCCcc Confidence 777766665432111111111 11111 1222333445555543 3345666777777777776544332222222334 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcCCCccccceeeEEeCCCCCC-CHHHHHHHHHH- Q lcl|Aclame:pro 355 KSGVALKFLYSLLDLKCSKTEKKFKKAIRELLW-----FVCEYLKISGNKSYDYKTVQITFNHSMII-NEAEKIDMAAK- 427 (479) Q Consensus 355 ~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~-----li~~~~~~~~~~~~~~~~i~i~f~~~~p~-d~~e~a~~~~k- 427 (479) .||+.+.. +...+...++..+.++-. ++.+.+..... ......+++.+.-++.. .....++.+.. T Consensus 363 vTAtEV~~-------r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~~l~~-~l~~~~v~~~~~s~la~l~r~~~~~~i~~~ 434 (517) T protein:vir:10 363 VTAYEIQR-------DAMLVEQSLGGVYSLFATTFQGPLARWFMNGISS-ILTSKNVSPTILTGIEALGRMAELDKLGTF 434 (517) T ss_pred ccHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh-hcCCCCccceeeccHHHHHHHHHHHHHHHH Confidence 68887765 344455555554443211 11111111110 01111233433222221 11111222221 Q ss_pred ------Hhc-------cCChHHHHHh----CCCCC----CHHHHHHHHHHHHHHHHhhh-----------hc-cCCCCCC Q lcl|Aclame:pro 428 ------STG-------IVSDETIVSN----HPWVE----DVNDELERLKKQEDTQKEYD-----------DL-IPNNQDG 474 (479) Q Consensus 428 ------~~g-------~is~et~~~~----l~~~~----d~~~El~~i~~E~~~~~~~~-----------~~-~~~~~~~ 474 (479) ++. .+....++.. +| ++ -.++|+++..++++++.... .. ..++..+ T Consensus 435 ~~~i~~~a~~~~~~~~~id~d~~~~~~a~~~G-vp~~~irs~~ev~~~~~~~~~~~~~~~~~~~ag~~~~~~~~~~~~~~ 513 (517) T protein:vir:10 435 NGYVSMTAQWPEPLQQAIKWPDFTDWVQGQIS-ANFPFFKTQDELNAEAQAQQEQEATKYAAEQAGKAIPDMVKNGQINP 513 (517) T ss_pred HHHHHHhhcCChHHHhcCCHHHHHHHHHHHhC-CChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC Confidence 111 1122223322 22 22 12355555444433221111 11 1122122 Q ss_pred CcCC Q lcl|Aclame:pro 475 VIDE 478 (479) Q Consensus 475 ~~de 478 (479) .+.+ T Consensus 514 ~~~~ 517 (517) T protein:vir:10 514 QGGQ 517 (517) T ss_pred CCCC Confidence 2222 No 172 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=98.10 E-value=4.7e-06 Score=49.79 Aligned_cols=374 Identities=13% Similarity=0.058 Sum_probs=168.9 Q ss_pred HHHhccCC---cccccc----------ccccccccc----ccc-----------ccc------CcceeecchHHHHHHHH Q lcl|Aclame:pro 44 EEYYYGNT---DVNNKR----------RYYLLDGAK----VDD-----------FTK------VNNKAINNYHKLLVDQK 89 (479) Q Consensus 44 ~~yy~g~~---~~~~~~----------~~~~~~~~~----~~~-----------~~~------~~~ri~~n~~~~iv~~~ 89 (479) .++|.-.- +...++ .+...+... ... ... ...-+..+=.-..|+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~acv~~I 80 (441) T protein:vir:98 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMI 80 (441) T ss_pred CceecCccceeccccccchhhhhhccccccccccccccCCCcchHHHHHHhhcccccCccccchhhhhccHHHHHHHHHH Confidence 23332210 000000 000000000 000 000 00000011112346666 Q ss_pred HhhhhccCeeecCCchh--HHHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEE Q lcl|Aclame:pro 90 VGYSVGNPIVFNADDDN--LTKLLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPI 161 (479) Q Consensus 90 a~~l~g~~~~~~~~~~~--~~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~ 161 (479) |+-+..-|+++.-+.+. ...+...+. -|. -..+...+....+.+|.+|+.+..+.+|++ .+..++|..+.+. T Consensus 81 a~~iA~lpl~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~ 160 (441) T protein:vir:98 81 ASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELK 160 (441) T ss_pred HHhhccCceEEecCCcccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCceeEEE Confidence 66666677776432211 112233332 132 335557778888999999999999988876 5889999999988 Q ss_pred EcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 162 WDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVP 241 (479) Q Consensus 162 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vP 241 (479) .++.. .+.+.. ...+..+. .....+.++.+.+++.- + T Consensus 161 ~~~~g--~~~~~~---~~~~~~~~--~~~~~~~~~dviHir~~-------------------------------~----- 197 (441) T protein:vir:98 161 LDARG--RLYYFH---QRIDSNGN--NIERNVKFEDMLDIKFY-------------------------------S----- 197 (441) T ss_pred ECCCC--cEEEEE---EEeccCcc--eeeEEEccccEEEeccC-------------------------------C----- Confidence 76532 222211 11111111 11222333333333210 0 Q ss_pred eEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh----HHHHh--------hcccceec Q lcl|Aclame:pro 242 FIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE----FIDNI--------RYYKSIKV 309 (479) Q Consensus 242 vv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~----~~~~~--------~~~~~~~~ 309 (479) .+...|.|.+..+...++.......-....+...+.|-.+++-......++ ....+ ..++++.+ T Consensus 198 ----~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~~~~~e~~~~~~~~~~~~~~G~~nag~~~vl 273 (441) T protein:vir:98 198 ----LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVL 273 (441) T ss_pred ----CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccCcceec Confidence 012247777777777776665555555555666666766654221111111 11111 12345666 Q ss_pred CCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 310 DGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG-DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWF 388 (479) Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~l 388 (479) +++.+.+.++.+.....+.+..+...+.|...-++|+.-.+... +.|.+.....+ ...|.-.++. T Consensus 274 ~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~y--------------~~tl~P~~~~ 339 (441) T protein:vir:98 274 DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLDY--------------LSTLKPYITC 339 (441) T ss_pred CCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHHH--------------HHHHHHHHHH Confidence 76666666665555555677777777888888788766544221 22222111111 1122222222 Q ss_pred HHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHH-----HHHHHHHH Q lcl|Aclame:pro 389 VCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVNDEL-----ERLKKQED 459 (479) Q Consensus 389 i~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~El-----~~i~~E~~ 459 (479) +...+...-........+++.....+-.|..+.++++.++ .|+++...++++++. +++.+..+ .-+..+.. T Consensus 340 ie~~ln~~L~~~~~~~~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGd~~~~~~~~n~~~~~~~ 419 (441) T protein:vir:98 340 VCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELV 419 (441) T ss_pred HHHHHHhhccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccc Confidence 2211111111111123345555566777899999988876 679999999888744 22222111 00111111 Q ss_pred HH---HhhhhccCCCCCCCcCC Q lcl|Aclame:pro 460 TQ---KEYDDLIPNNQDGVIDE 478 (479) Q Consensus 460 ~~---~~~~~~~~~~~~~~~de 478 (479) .+ ...........+|..+| T Consensus 420 ~~~q~~~~~~~~~~~kgGe~ne 441 (441) T protein:vir:98 420 DEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred cccccccccccccccCCCCCCC Confidence 00 00011111223334444 No 173 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=98.09 E-value=4.7e-06 Score=49.78 Aligned_cols=370 Identities=12% Similarity=0.045 Sum_probs=172.0 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHH Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLV 86 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 86 (479) |.|-.+.+..+...+.. ...+...... ..-......+.|.... .. ....-+..+-....| T Consensus 1 m~m~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~g~-------------~v---~~~~al~~~~v~~~v 60 (392) T protein:vir:74 1 MILPILNFINQTNDPPE-AGSVQSYFPD---GNDAQIMESLLGDNNE-------------WV---SARAALRNSDLFSII 60 (392) T ss_pred CcchhhhhhhcccCccc-cccccccccc---CchhhhhhhccCCCCc-------------cc---chhhhhcchHHHHHH Confidence 44444433222111100 0000000000 0000011111111000 00 000001223344567 Q ss_pred HHHHhhhhccCeeecCCchhHHHHHHHHHhcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEE Q lcl|Aclame:pro 87 DQKVGYSVGNPIVFNADDDNLTKLLNDLLGEE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIW 162 (479) Q Consensus 87 ~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~ 162 (479) +.+++-+.+-|+++.... ...+++ .-|. -..+...+...++.+|.+|+.+..+.+|++ .+..++|..+.+.. T Consensus 61 ~~ia~~ia~lp~~~~~~~--~~~l~~--~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~ 136 (392) T protein:vir:74 61 LQLSSDLAIVKINAEKKK--NQGIID--NPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYY 136 (392) T ss_pred HHHHHhhccCceeeccch--hhhhhh--hcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 777777777787653222 111222 1132 345566778899999999999999988886 68889999998776 Q ss_pred cCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccce Q lcl|Aclame:pro 163 DSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF 242 (479) Q Consensus 163 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 242 (479) +.... .+ +|.+...++ .......+..+.+.++... + T Consensus 137 ~~~~~-~~-----~y~~~~~~~-~~~~~~~~~~~evih~~~~------------------------------~------- 172 (392) T protein:vir:74 137 FEYEN-GM-----YYNITFDDP-KIEPILQAPQSDLIHMKLL------------------------------S------- 172 (392) T ss_pred cCCCc-eE-----EEEEEecCC-ccceeEEEcCccEEEecCC------------------------------C------- Confidence 65321 11 122211111 1111222333444333210 0 Q ss_pred EEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc-cchhhHHH--------HhhcccceecCCCC Q lcl|Aclame:pro 243 IPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG-TSLQEFID--------NIRYYKSIKVDGGG 313 (479) Q Consensus 243 v~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~-~~~~~~~~--------~~~~~~~~~~~~~~ 313 (479) ......|.|.+..+...++.......-....+...+.|-.+++-... ...++... ....++++.++++. T Consensus 173 --~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~ 250 (392) T protein:vir:74 173 --IDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLE 250 (392) T ss_pred --CCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHhccccCCCeeecCCCc Confidence 00113478888887777776666665666666777777666542211 11121111 11224556666666 Q ss_pred cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDK--SGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCE 391 (479) Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~--Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 391 (479) +++.+..+.....+.+..+.....|...-+.|+.-.+..+.. +.++.+ ..+...|...++.|.. T Consensus 251 ~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~e~~~--------------~~~~~~l~p~~~~ie~ 316 (392) T protein:vir:74 251 EFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQIS--------------GMYASALNRYLRPAIS 316 (392) T ss_pred eEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHH--------------HHHHHHHHHHHHHHHH Confidence 666665555556677777888888888878886555433221 122221 1222333333333332 Q ss_pred HHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 392 YLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNH---PWVEDVNDELERLKKQEDTQKEYDD 466 (479) Q Consensus 392 ~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l---~~~~d~~~El~~i~~E~~~~~~~~~ 466 (479) -+...-.. ++++.+...+-.|..+.++.+.++ +|+++...+.+++ |+.. .|+.+ .+ T Consensus 317 ~l~~~l~~-----~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~near~~~~~~g~~p---ne~r~-----------~e 377 (392) T protein:vir:74 317 ELEYKLSD-----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP---KDLPA-----------PE 377 (392) T ss_pred HHHHhccc-----hhcccchhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHHHhCCCCc---cccch-----------hc Confidence 22221111 122333333445667777777775 5799998887664 4432 22221 11 Q ss_pred ccCCCCCCCcCCC Q lcl|Aclame:pro 467 LIPNNQDGVIDET 479 (479) Q Consensus 467 ~~~~~~~~~~det 479 (479) ..+...+|.++|- T Consensus 378 nl~~~~~Gd~~~p 390 (392) T protein:vir:74 378 NTNKKTTGQSNEP 390 (392) T ss_pred CCCCCCCCCCCCC Confidence 1222222222222 No 174 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=98.08 E-value=5.1e-06 Score=49.58 Aligned_cols=369 Identities=8% Similarity=-0.038 Sum_probs=173.1 Q ss_pred HHHHHHhccCCccccccccccccccccccccc------CcceeecchHHHHHHHHHhhhhccCeee---cCCc--hhH-H Q lcl|Aclame:pro 41 KQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTK------VNNKAINNYHKLLVDQKVGYSVGNPIVF---NADD--DNL-T 108 (479) Q Consensus 41 ~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~------~~~ri~~n~~~~iv~~~a~~l~g~~~~~---~~~~--~~~-~ 108 (479) -.+.++++++........... .......... ....+...-....|+.++.-+.+-|+.+ +.+. +.. . T Consensus 1 m~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~g~~~~~~~ 79 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVNWQVV-PGGMRSSSSQAGVIITPETALALSAVRACVTLLAESVAQLPCVLYRRTENGGREIAFD 79 (419) T ss_pred CcchhhhccCCcccccccccc-ccccccccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCCceecccc Confidence 223344444421100000000 0000000000 0111222334566777777777777764 1111 111 1 Q ss_pred -HHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeec Q lcl|Aclame:pro 109 -KLLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIED 181 (479) Q Consensus 109 -~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~ 181 (479) .+...+. -| ....+...+....+.+|.+|+.+..+.+|.+ .+..++|..+.+..+... ..+|... T Consensus 80 ~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~~~g-------~~~y~~~- 151 (419) T protein:vir:57 80 HPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKGPDG-------MPYYDIP- 151 (419) T ss_pred chHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEECCCc-------eEEEEEc- Confidence 1223332 12 2445567788899999999999999988885 678899998887655431 1122221 Q ss_pred ccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHH Q lcl|Aclame:pro 182 IDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSL 261 (479) Q Consensus 182 ~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~l 261 (479) ..+ .++..+.+.+++.- | .+...|.|.+..+... T Consensus 152 ~~~------~~~~~~~vih~r~~------------------------------------~----~d~~~G~s~i~~~~~~ 185 (419) T protein:vir:57 152 SIG------EILPMRMVHHIKSF------------------------------------S----LDGYIGTSPIQTNPDV 185 (419) T ss_pred CCc------eEEchhhEEEecCc------------------------------------C----CCCcccccHHHHHHHH Confidence 111 12223333332100 0 0123477878877777 Q ss_pred HHHHHHHHHHHHHHHHHhccceeeeecC---CccchhhH----HHHh--------hcccceecCCCCcceeeecCCCHHH Q lcl|Aclame:pro 262 IDIYDNNISTLADNLDEIQEVIYVLKEY---PGTSLQEF----IDNI--------RYYKSIKVDGGGGVDKLEINIPVEA 326 (479) Q Consensus 262 id~~~~~~s~~~~~~~~~~~p~l~~~g~---~~~~~~~~----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (479) ++............+...+.|-.++... .....++. ...+ ..++++.++++.+++.+........ T Consensus 186 i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q 265 (419) T protein:vir:57 186 LGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAVDAILAKWTERYGGVRNAFSVGMLQEGMTYKQLSQDNEKAQ 265 (419) T ss_pred HHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHHHHHHHHHHHHhccccccccceecCCCceEEEcCCChhhHH Confidence 7766555555555566666676555421 11112221 1111 1234566666666666655555556 Q ss_pred HHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--ccc Q lcl|Aclame:pro 327 KKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSY--DYK 404 (479) Q Consensus 327 ~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~--~~~ 404 (479) +.+..+..++.|+..-++|+.-.+..+..+...++... ...+...|.-.++.+...+...--... ... T Consensus 266 ~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~----------~~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~ 335 (419) T protein:vir:57 266 LLQSRQYTVNEVCRLYKVPPHMIQDLQKSTNNNIEHQG----------LQYVIYTMLAILKRHESAMMRDLLLPSERRDF 335 (419) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhCCCCCCccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhccCccccCCe Confidence 77788888888888888886554433222222111111 112233333333333332222111111 122 Q ss_pred eeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHH-HHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 405 TVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVN-DELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 405 ~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~-~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) .+++.+...+..|..+.++.+.++ .|+++.-.++++++.-.-+. .++- +-.- ..+ .+...+...+..+.| T Consensus 336 ~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~-~~~n---~~~-~~~~~~~~~~~~~~~ 408 (419) T protein:vir:57 336 YIEFNVSSLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLTPIPGGDKYL-TPLN---MVD-SKALTGIGKATPQQL 408 (419) T ss_pred EEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeee-eccc---ccc-ccccccccCCCcccC Confidence 345555666778999999998876 68999999998876522111 0110 0000 000 000001111111111 No 175 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=98.03 E-value=6.5e-06 Score=49.00 Aligned_cols=373 Identities=9% Similarity=-0.059 Sum_probs=175.5 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccc----------ccccccccc-Ccc Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLD----------GAKVDDFTK-VNN 75 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~----------~~~~~~~~~-~~~ 75 (479) |+ .++. .|..++..+|+.+............. ......... ... T Consensus 1 ~~----------------------~~~~---~~~~~~m~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (413) T protein:vir:96 1 MP----------------------GVSE---IRKDKNLKFFNNKRSPTEESKAKDEIPKAPQVVMTLPNFFKELISDGYT 55 (413) T ss_pred CC----------------------ccch---hhhhhcCCccccCCCcchhhhhhccccccccccccchhhHhhhccchhH Confidence 00 0111 11122223443332111000000000 000000000 000 Q ss_pred e-eecchHHHHHHHHHhhhhccCeeec---CCc-h-hHHHHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCC Q lcl|Aclame:pro 76 K-AINNYHKLLVDQKVGYSVGNPIVFN---ADD-D-NLTKLLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINR 144 (479) Q Consensus 76 r-i~~n~~~~iv~~~a~~l~g~~~~~~---~~~-~-~~~~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~ 144 (479) + ...+.....|+.+|+-+..-|+.+- .+. . ....+...+. -| ....+...+....+.+|.+|+.+..+. T Consensus 56 ~~~~~~~v~~cI~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~ 135 (413) T protein:vir:96 56 KLSDSPEVRMAVDCIADLVSNMTIQLMQNGETGDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQV 135 (413) T ss_pred HHhhchHHHHHHHHHHHhhccCceEEEEecCCCccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcC Confidence 0 1135556678888888888888752 111 1 1112222232 13 234566778889999999999999988 Q ss_pred CCc-e-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccc Q lcl|Aclame:pro 145 KGE-F-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTD 222 (479) Q Consensus 145 ~~~-~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 222 (479) +|. + .+..++|..+.+.+++.. + +|... .++. .+.++.+.+++... T Consensus 136 ~g~~~~~L~~l~~~~v~~~~~~~~---~-----~y~~~-~~~~------~~~~~evih~k~~~----------------- 183 (413) T protein:vir:96 136 SGDKIIGLTPISPYKVTFNVSDDD---L-----DYSIT-FDNK------EYDPSTLLHFVLNP----------------- 183 (413) T ss_pred CCCceEEEEEecCceeEEEEcCCe---E-----EEEEe-ecCc------EEchhhEEEEeccC----------------- Confidence 874 3 688899999887766431 1 11111 1111 12222333221100 Q ss_pred ccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH----H Q lcl|Aclame:pro 223 IQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF----I 298 (479) Q Consensus 223 ~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~----~ 298 (479) ++. +...|.|.+..+...+.............+...+.|-.++.... ...++. . T Consensus 184 ------------~~~---------~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~-~l~~e~~~~~~ 241 (413) T protein:vir:96 184 ------------SIE---------RPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVDS-DSDELSDEEGR 241 (413) T ss_pred ------------CCC---------CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCC-CCCHHHHHHHH Confidence 000 01247777777776666665555556666666777766665322 222221 1 Q ss_pred HHh--------hcccceecCCCCc-ceeee-cCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 299 DNI--------RYYKSIKVDGGGG-VDKLE-INIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLD 368 (479) Q Consensus 299 ~~~--------~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~ 368 (479) ..+ ..++++.+++++. ..-+. .......+.+..+...+.|+..-++|+.-.+...+..+... T Consensus 242 ~~~~~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~-------- 313 (413) T protein:vir:96 242 ENFEEMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVGTYNKDEFN-------- 313 (413) T ss_pred HHHHHHhcCccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCcchHHHHH-------- Confidence 111 1123344443332 22111 12333445566667777777777777644432111111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCC Q lcl|Aclame:pro 369 LKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVED 446 (479) Q Consensus 369 ~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d 446 (479) ..+...|.-+++.|...+...--. +...+++.+...+..|..+.++++.++ +|+++.-.++++++.-.. T Consensus 314 -------~~~~~~l~P~~~~ie~~ln~~ll~--~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~ 384 (413) T protein:vir:96 314 -------NFINTKIMSIAQVIQQTYNKLIVE--EDMYFSLNPRSLYNYSLTEMVSAGAQMTQLNALRRNEFRNWVGMPPD 384 (413) T ss_pred -------HHHHHHHHHHHHHHHHHHHHhhCC--CCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 123333444444444433321111 123456666777788999999998886 689999999998875332 Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 447 VNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 447 ~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) + ..+.+-- ...-...+...+.++..++|| T Consensus 385 ~--~gd~~~~--~~n~~~~~~~~~~~~~~~~dt 413 (413) T protein:vir:96 385 A--EMDDLLV--LENYLQQKDLVNQKKLIQDET 413 (413) T ss_pred C--Ccceeee--cccccchhhcccccCCCCCCC Confidence 1 1111100 001111223345566788888 No 176 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=98.01 E-value=7.3e-06 Score=48.75 Aligned_cols=393 Identities=11% Similarity=0.024 Sum_probs=170.4 Q ss_pred HHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhh Q lcl|Aclame:pro 14 VQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYS 93 (479) Q Consensus 14 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l 93 (479) +-+.. -+.+... ...++.-.....|.+.... ..+... ..-.....-...+.....|+.+++-+ T Consensus 1 ~~~~~------~~~~~~p---~~~e~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~a~~~~~V~acV~~IA~~i 63 (518) T protein:vir:10 1 MLLAN------GQTLSAP---AMAELSPQMQDSYYYAPAV-GMQLER-------QFSLYGGIYKNQPWVRTVIAKRAQAL 63 (518) T ss_pred CcccC------ceeecCc---hhhhhhhhhhccccccccc-ceeccc-------ccchhhHHHhhhHHHHHHHHHHHHhh Confidence 00000 0000000 0000111111222211100 000000 00000000011234455677777777 Q ss_pred hccCeee---cCCc--hhHHHHHHHHHh--cC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEE Q lcl|Aclame:pro 94 VGNPIVF---NADD--DNLTKLLNDLLG--EE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIW 162 (479) Q Consensus 94 ~g~~~~~---~~~~--~~~~~~~~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~ 162 (479) ..-|+.+ +.+. +.....+..+.. |. ...+...+....+.+|.+|+.+..+.+|++ .+..++|..+.+.. T Consensus 64 A~lpl~l~~~~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~ 143 (518) T protein:vir:10 64 ARLPVKCMFTSGDTETEESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKR 143 (518) T ss_pred ccCceEEEEEcCCCceeccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEE Confidence 6666654 2221 111222222322 32 234566778889999999999999999986 58899999998877 Q ss_pred cCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccce Q lcl|Aclame:pro 163 DSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF 242 (479) Q Consensus 163 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 242 (479) +.... .+ +|.....++... ....+..+.+.+++.- ++. T Consensus 144 ~~~~~-~~-----~y~~~~~~~~~~-~~~~~~~~eViHir~~------------------------------s~d----- 181 (518) T protein:vir:10 144 NSRTG-RY-----EYYFQAGAGVGT-QLVSFADDEVVPIRFF------------------------------NPD----- 181 (518) T ss_pred cCCCC-EE-----EEEEEecCCccc-eEEEecCCcEEEecCC------------------------------CCC----- Confidence 65432 11 112111111111 1122333334333210 000 Q ss_pred EEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---HHHHh--------hcccceecCC Q lcl|Aclame:pro 243 IPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---FIDNI--------RYYKSIKVDG 311 (479) Q Consensus 243 v~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---~~~~~--------~~~~~~~~~~ 311 (479) +...|.|.+..+...+...........+.+...+.|-.++........+. +...+ ..++++.+++ T Consensus 182 ----g~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~~~k~~~~~~~~G~~nag~v~vL~~ 257 (518) T protein:vir:10 182 ----GLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSEAAQQRLREQFDRAHSGSSNTGKTMVVEE 257 (518) T ss_pred ----cccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHHHHhcCccccCcceEcCC Confidence 01247777776666666665555555555666677766655332211111 11111 1234566776 Q ss_pred CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCE 391 (479) Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 391 (479) +.+++.++.+.....+.+..+...+.|...-++|+.-.+.....+...++...... +...|.-.++.|.. T Consensus 258 G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~~t~sn~eq~~~~f----------~~~tL~P~l~~ie~ 327 (518) T protein:vir:10 258 GMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMRAF----------YRDTMAIPIARIQS 327 (518) T ss_pred CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHHHH----------HHHHHHHHHHHHHH Confidence 66666666555555577777777888888878876555433222222222111111 12222222222222 Q ss_pred HHHhcCCCc-cccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHH-H------HHHHHHHHH Q lcl|Aclame:pro 392 YLKISGNKS-YDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVND-E------LERLKKQED 459 (479) Q Consensus 392 ~~~~~~~~~-~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~-E------l~~i~~E~~ 459 (479) .+...-... .....+++.....+..|..+.++++.++ +|+++.-.++++++. ++++.. + +..+..-.. T Consensus 328 ~ln~~L~~~~~~~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~Gl~pie~~~gD~~~~~~n~~pl~~~~~ 407 (518) T protein:vir:10 328 AMDKYVGQYWVRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKADELYANSALQPLGATPD 407 (518) T ss_pred HHHHhhcccccCCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeecccceecccccc Confidence 111110000 1122455555677788999999988876 578999989888754 222111 1 111111000 Q ss_pred H-----HHhhhhccCCCCCCCcCC--C Q lcl|Aclame:pro 460 T-----QKEYDDLIPNNQDGVIDE--T 479 (479) Q Consensus 460 ~-----~~~~~~~~~~~~~~~~de--t 479 (479) . +.+..+...+.+.+..|+ + T Consensus 408 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 434 (518) T protein:vir:10 408 GAVEGEEAPAPKRPASTPVASLDQSPP 434 (518) T ss_pred cccCCCCCCCCCCCCcccccccccccc Confidence 0 000000000000000001 0 No 177 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=97.97 E-value=8.5e-06 Score=48.37 Aligned_cols=395 Identities=12% Similarity=0.080 Sum_probs=158.5 Q ss_pred HHHHHHhccChHHHHHHHHHHHHHhhHHH----HHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHH Q lcl|Aclame:pro 11 LIKVQLKKESTINLVKVIEHYILKHRPEK----YKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLV 86 (479) Q Consensus 11 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 86 (479) .+...+..-+..+ .+. +.++...- .....+||+. +. .........-..++....| T Consensus 1 ~~~~~~~i~s~~~-~~~----i~~~~~~s~~~~~~~~~~~~~p-------p~---------~~~~la~l~~~n~~v~scI 59 (542) T protein:vir:41 1 MFNYHLSIRSLEK-YKA----IKREEVESQALGETRFEEYVEP-------KV---------NPLVLLSLLQVNPYHASAC 59 (542) T ss_pred Ccccccccccccc-chh----hhhccccccccccccCCccccC-------CC---------CHHHHHHHHhhcHHHHHHH Confidence 1111111111000 000 11111100 0000111110 00 0000000001235667789 Q ss_pred HHHHhhhhccCeeecCCchhHHHHHHHHHhc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEE Q lcl|Aclame:pro 87 DQKVGYSVGNPIVFNADDDNLTKLLNDLLGE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIW 162 (479) Q Consensus 87 ~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~ 162 (479) +.++..+.+-|+++..++... +..+..| ....+...++.+.+.+|.+|+.+..+.+|.+ .+..++|..+.+.. T Consensus 60 ~~ia~~IA~l~~~~~~~~~~~---l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v~~ 136 (542) T protein:vir:41 60 SIKANDIIRTGYILEGDDEGV---VDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRVHK 136 (542) T ss_pred HHHHHHHhhCceeeecccchh---hhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEEEE Confidence 999999999998886554332 2233333 3455677788899999999999999988876 47888998887765 Q ss_pred cCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccce Q lcl|Aclame:pro 163 DSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF 242 (479) Q Consensus 163 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 242 (479) |... ++.. .++....++..|........ ..+.. ...+..=-| T Consensus 137 d~~~------~~~~-----~~~~~~~~~~~y~~~~~~~~--~~g~~-------------------------~~~~~~~eI 178 (542) T protein:vir:41 137 DGSR------YRQT-----WDGVNITHFKDYRYEGEINP--ETGED-------------------------QDSVGANEL 178 (542) T ss_pred cCCe------eEee-----ecCCcceeEEeecccccccc--ccccc-------------------------ccccCcccE Confidence 5331 1111 11111222222221111000 00000 000000113 Q ss_pred EEecC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeee--ecCCccc-----------hhhHHHHh--- Q lcl|Aclame:pro 243 IPFKN-----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL--KEYPGTS-----------LQEFIDNI--- 301 (479) Q Consensus 243 v~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~--~g~~~~~-----------~~~~~~~~--- 301 (479) +++++ ...|.|.+..+...+...........+.+.-.+.|-.++ +|..... .+.+...+ T Consensus 179 iHir~~~~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~ 258 (542) T protein:vir:41 179 VFIHIPSPVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDELEEDPDGNPTGRTVIQALIEDN 258 (542) T ss_pred EEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCccccccccccccCHHHHHHHHHHHHHH Confidence 44432 235788777766666555444444444445555564443 3322111 01111111 Q ss_pred ------hcccceecC----CCCcceeeecCC--CHHHHHHHHHHHHHHHHHHhCCCCCcccccccc--cHHHHHHHHHHH Q lcl|Aclame:pro 302 ------RYYKSIKVD----GGGGVDKLEINI--PVEAKKELLDRLEKNIIIFGQGVNPESQNTGDK--SGVALKFLYSLL 367 (479) Q Consensus 302 ------~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~--Sg~Ai~~~~~~l 367 (479) ..++++.+. .+++++|..... ....+.+..+...+.|...-++|+.-.+..... ++.-++... T Consensus 259 ~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~--- 335 (542) T protein:vir:41 259 FKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDPYRLGIADTGPLGGNFAEVTR--- 335 (542) T ss_pred HhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCcCCCcccccccHHHHH--- Confidence 112333332 234555554443 344566777777888888878886544332111 111111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeC--CCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCC Q lcl|Aclame:pro 368 DLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFN--HSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVE 445 (479) Q Consensus 368 ~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~--~~~p~d~~e~a~~~~k~~g~is~et~~~~l~~~~ 445 (479) ...+...|.-+++.+...+...-..... ..+.+.|+ ..+..|..+.++.+ -..|+++...+++.|+.++ T Consensus 336 -------~~f~~~tL~P~~~~ie~~ln~~L~~~~~-~~~~~~f~~~~ll~~d~~~~~~~~-v~~GilT~NE~Re~L~g~~ 406 (542) T protein:vir:41 336 -------RTYYESVVRPQQNIISSILTDFFQVKFN-PKTRFKFNDETLLESDSVRNCALL-VQSGVLTPAEARERLFGLD 406 (542) T ss_pred -------HHHHHHHHHHHHHHHHHHHHhhcccccC-CceEEEecchhhcchHHHHHHHHH-HhCCCCCHHHHHHhhCCCC Confidence 1112222222222222222211111111 23345554 44444444433332 2368999988887664333 Q ss_pred ---CHH-----HHHHHHHHH-----HH---HHHhhhhccCCCCC-------------CCcCCC Q lcl|Aclame:pro 446 ---DVN-----DELERLKKQ-----ED---TQKEYDDLIPNNQD-------------GVIDET 479 (479) Q Consensus 446 ---d~~-----~El~~i~~E-----~~---~~~~~~~~~~~~~~-------------~~~det 479 (479) |+- ...+.++.. .+ +.....+......+ +..+++ T Consensus 407 pgdd~~l~p~~~~~~~~~~~~~n~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (542) T protein:vir:41 407 GGPDIFMVPSKGAAKSVKRQERNYEKNQIREIRKIYAKYRPRFNEIISSKLSAEEKKKKIDES 469 (542) T ss_pred CCCccccccccccccccccCCcCCCCCchhhhhhcccccCccccccccccccchhhcccccch Confidence 210 000111000 00 00000000000000 111111 No 178 >protein:vir:96988 Length: 516 # NCBI annotation: 29 # Family: family:all:481 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654130;genbank:gi:108862014;genbank:GeneID:5075937 Probab=97.96 E-value=8.9e-06 Score=48.27 Aligned_cols=428 Identities=10% Similarity=0.065 Sum_probs=187.0 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |.+-+.+.++.-. ..+.+..+. +..+|.......+++++-- +|+. + .+.+ ......++--+ T Consensus 1 ~~~~~~~~~~~~~--------~~l~~r~~~-L~~~R~~~e~~w~e~a~~~--lP~~--~--~~~~----~~~~~~~~~ds 61 (516) T protein:vir:96 1 MKQSIDLEYGGKR--------SKIPKLWEK-FSNKRSSFLDRAKHYSKLT--LPYL--M--NDKG----DNETSQNGWQG 61 (516) T ss_pred CcchhhhhhhhhH--------HHHHHHHHH-HHHHhhHHHHHHHHHHHhh--cccc--c--CCCC----CccccCCcccc Confidence 7766655544221 223334433 3333433333333433311 1110 0 0000 01112234456 Q ss_pred hHHHHHHHHHhhhhcc--C-----eeecCCch-------------hHHHHH--------HHHHhcCHHHHHHHHHHHHHh Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGN--P-----IVFNADDD-------------NLTKLL--------NDLLGEEFDDTITELYLNASN 132 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~--~-----~~~~~~~~-------------~~~~~~--------~~~~~n~~~~~~~~~~~~~~~ 132 (479) .+...++.+|+-|.+- | +++...++ +.+..+ ..+..++|.....++.++... T Consensus 62 tg~~a~~~LAa~l~~~ltpp~~~WF~L~~~~~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~ 141 (516) T protein:vir:96 62 VGAQATNHLANKLAQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIV 141 (516) T ss_pred hHHHHHHHHHHHHHhhhcCCCCcccccccChhHHhhccccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh Confidence 6667777777776543 1 23332221 122222 234457899999999999999 Q ss_pred CCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeee------cc-----------cCceEEEEEEEeC Q lcl|Aclame:pro 133 KGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIE------DI-----------DGNKIKRVEYYTE 195 (479) Q Consensus 133 ~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~------~~-----------~~~~~~~~~~y~~ 195 (479) +|.++++ .++++. ++.++-.+++ +-.+... ++...++..+.. +. +.+....+++|+. T Consensus 142 ~G~a~l~--~d~~~~--~~~~pl~~y~-v~~d~~G-~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~ 215 (516) T protein:vir:96 142 AGSCMLY--KPSKGA--ISAIPMHHYV-VNRDTNG-DLLDIILLQEKALRTFDPATRAVVEVGLKGKKCKEDDSVKLYTH 215 (516) T ss_pred HCeEeEE--ecCCCC--EEEEEcCeEE-EeeCCCC-CeeeehhhhHhhHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEe Confidence 9998754 466665 4455445543 3333333 343333332211 00 0011112333321 Q ss_pred CcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 196 NDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNIS 270 (479) Q Consensus 196 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s 270 (479) -. +...+.+. ..... ++.........+|..+|++.+. ++.+|+|-.++..+-+..+|.+.- T Consensus 216 v~----~~~~~~~~---------~~~~~-d~~~~~~es~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~ 281 (516) T protein:vir:96 216 AK----YLGDGFWE---------LKQSA-DDIPVGKVSKIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSE 281 (516) T ss_pred ee----eeCCceeE---------EEEEe-CceeeccccccccccCCeeeeeeeecCCCCcccchHHHhhHHHHHHHHHHH Confidence 10 00000000 00000 1111122233345667777654 346899999999999999998888 Q ss_pred HHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeeec--CCCHHHHHHHHHHHHHHHHHHhCCCCCc Q lcl|Aclame:pro 271 TLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEI--NIPVEAKKELLDRLEKNIIIFGQGVNPE 348 (479) Q Consensus 271 ~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~s~~~~~~ 348 (479) ...........|.+.+.-.+...... ... ...+.+.....++++.++. ..+....+..++.++..|...-....+. T Consensus 282 ~~l~~~~~a~~~~~lv~p~g~~~~~~-l~~-~~~g~i~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~ 359 (516) T protein:vir:96 282 AVARGAALMADIKYLIRPGAQTDVDH-FVN-SGTGEVVTGVEEDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMMETMT 359 (516) T ss_pred HHHHHHHHhcCCccccCcccccchhh-hcc-CCCceeecCCcccceeeecCcccchhHHHHHHHHHHHHHHHHHhhhhhc Confidence 88888888888776553211111111 111 1112333344455666553 2456666777777777775543322222 Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 349 SQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLW-----FVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKID 423 (479) Q Consensus 349 ~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~-----li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~ 423 (479) .-+....||+.+.. +..++...++..+.++-. +|.+.+...+ .......+++.+..++. .+..++ T Consensus 360 ~r~~~rvTAtEV~~-------r~~E~~~~LGpv~~rl~~Ell~Pli~r~l~~~~-p~lp~~~v~~~~vs~l~--~l~r~~ 429 (516) T protein:vir:96 360 RRDAERVTAVEIQR-------DALEIEQNMGGVYSLFATTMQSPVAMWGLLEAG-ESFTSDLVDPVIITGIE--ALGRMA 429 (516) T ss_pred cCCCccccHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcC-CCCccccccceeechHH--HHHHHH Confidence 22334468888765 455555566665554321 1222222222 22222334444332222 222111 Q ss_pred ----------HHHHHhc-------cCChHHHHHh----CCCCC---CHHHHHHHHHHHHHHHH----hhhhccCCCCCCC Q lcl|Aclame:pro 424 ----------MAAKSTG-------IVSDETIVSN----HPWVE---DVNDELERLKKQEDTQK----EYDDLIPNNQDGV 475 (479) Q Consensus 424 ----------~~~k~~g-------~is~et~~~~----l~~~~---d~~~El~~i~~E~~~~~----~~~~~~~~~~~~~ 475 (479) .+..+++ .+....+++. +|.-. -.++|++++.+++++.. .+.......++.. T Consensus 430 ~~~~i~~~~~~i~~~~~~~p~v~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~~~~~~~~q~~~~~a~~~~~~~~~~~ 509 (516) T protein:vir:96 430 ELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMAQEQEAQMQAQQAQMLEEGVAKAVPGVI 509 (516) T ss_pred HHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHh Confidence 1111121 1222333332 22111 13456655544433221 1111111111211 Q ss_pred ---cCCC Q lcl|Aclame:pro 476 ---IDET 479 (479) Q Consensus 476 ---~det 479 (479) .-|. T Consensus 510 ~~~~~~~ 516 (516) T protein:vir:96 510 QQELKEA 516 (516) T ss_pred hcccccC Confidence 2222 No 179 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=97.89 E-value=1.3e-05 Score=47.46 Aligned_cols=370 Identities=12% Similarity=0.040 Sum_probs=169.5 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHH Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLV 86 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 86 (479) |.|..+....+........ .+..... ..........+.|..- ... ....-+..+-....| T Consensus 1 m~m~~f~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~-------------~~v---~~~~al~~~~v~~~i 60 (392) T protein:vir:10 1 MILPILNFINQTNDPPEVG-SVQSYFP---DGNDAQIMESLLGDNN-------------EWV---SARAALRNSDLFSII 60 (392) T ss_pred Ccchhhhhhhccccccccc-ccccccc---cCchhhhhhhhcCCCC-------------cee---chHHhhccHHHHHHH Confidence 4455444322211111000 0000000 0000000011111100 000 000001123344567 Q ss_pred HHHHhhhhccCeeecCCchhHHHHHHHHHhcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEE Q lcl|Aclame:pro 87 DQKVGYSVGNPIVFNADDDNLTKLLNDLLGEE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIW 162 (479) Q Consensus 87 ~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~ 162 (479) +.+++-+..-|+++.... ...++. .-|. ...+...+....+.+|.+|+.+..+.+|++ .+..++|..+.+.. T Consensus 61 ~~ia~~ia~lp~~~~~~~--~~~l~~--~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~ 136 (392) T protein:vir:10 61 LQLSSDLAIVKINAEKKK--NQGIID--NPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYY 136 (392) T ss_pred HHHHHhhccCceeeccch--hhhHhh--cCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 777777777777654222 111221 1132 345567778899999999999999988886 68889999988776 Q ss_pred cCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccce Q lcl|Aclame:pro 163 DSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF 242 (479) Q Consensus 163 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 242 (479) +.... .+ +|.....+ ........+.++.+.+++... + T Consensus 137 ~~~~~-~~-----~y~~~~~~-~~~~~~~~~~~~eiih~~~~~------------------------------~------ 173 (392) T protein:vir:10 137 FEYEN-GM-----YYNITFDD-PKIEPILQAPQSDLIHMKLLS------------------------------I------ 173 (392) T ss_pred cCCCc-eE-----EEEEEecC-cccceeEEEccccEEEecCCC------------------------------C------ Confidence 65321 11 12221111 111112223344444332100 0 Q ss_pred EEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCC-ccchhhHHH--------HhhcccceecCCCC Q lcl|Aclame:pro 243 IPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYP-GTSLQEFID--------NIRYYKSIKVDGGG 313 (479) Q Consensus 243 v~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~-~~~~~~~~~--------~~~~~~~~~~~~~~ 313 (479) .....|.|.+..+...++............+...+.|-.+++-.. ....++... ....++++.++++. T Consensus 174 ---~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~ 250 (392) T protein:vir:10 174 ---DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLE 250 (392) T ss_pred ---CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHhccccCCCeeecCCCc Confidence 011357888887777776666655555555666666755543211 111121111 11223456666665 Q ss_pred cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDK-S-GVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCE 391 (479) Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~-S-g~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 391 (479) +++.+..+.....+.+..+..++.|+..-+.|+.-.+..+.. | .++. ...+...|.-.++.+.. T Consensus 251 ~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~~~~~~--------------~~f~~~~l~P~~~~ie~ 316 (392) T protein:vir:10 251 EFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI--------------SGMYASALNRYLRPAIS 316 (392) T ss_pred eEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHH--------------HHHHHHHHHHHHHHHHH Confidence 665555555555677778888888888878776555433221 1 1111 11233333333333333 Q ss_pred HHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 392 YLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNH---PWVEDVNDELERLKKQEDTQKEYDD 466 (479) Q Consensus 392 ~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l---~~~~d~~~El~~i~~E~~~~~~~~~ 466 (479) .+...-.. ++++......-.|..+.+..+.++ +|+++...+.+++ |+..+ |+.+. + T Consensus 317 ~l~~~L~~-----~~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~---e~r~~-----------e 377 (392) T protein:vir:10 317 ELEYKLSD-----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAP-----------E 377 (392) T ss_pred HHHHhccc-----cccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCcc---ccchh-----------c Confidence 22221111 122222233334666677777775 5789998877654 55432 32211 1 Q ss_pred ccCCCCCCCcCCC Q lcl|Aclame:pro 467 LIPNNQDGVIDET 479 (479) Q Consensus 467 ~~~~~~~~~~det 479 (479) ..+...+|.+.|- T Consensus 378 ~l~~~~~Gd~~~p 390 (392) T protein:vir:10 378 NTNKKTTGQSNEP 390 (392) T ss_pred CCCCCCCCCCCCC Confidence 1222232322222 No 180 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=97.89 E-value=1.3e-05 Score=47.46 Aligned_cols=370 Identities=12% Similarity=0.040 Sum_probs=169.5 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHH Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLV 86 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 86 (479) |.|..+....+........ .+..... ..........+.|..- ... ....-+..+-....| T Consensus 1 m~m~~f~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~-------------~~v---~~~~al~~~~v~~~i 60 (392) T protein:vir:39 1 MILPILNFINQTNDPPEVG-SVQSYFP---DGNDAQIMESLLGDNN-------------EWV---SARAALRNSDLFSII 60 (392) T ss_pred Ccchhhhhhhccccccccc-ccccccc---cCchhhhhhhhcCCCC-------------cee---chHHhhccHHHHHHH Confidence 4455444322211111000 0000000 0000000011111100 000 000001123344567 Q ss_pred HHHHhhhhccCeeecCCchhHHHHHHHHHhcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEE Q lcl|Aclame:pro 87 DQKVGYSVGNPIVFNADDDNLTKLLNDLLGEE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIW 162 (479) Q Consensus 87 ~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~ 162 (479) +.+++-+..-|+++.... ...++. .-|. ...+...+....+.+|.+|+.+..+.+|++ .+..++|..+.+.. T Consensus 61 ~~ia~~ia~lp~~~~~~~--~~~l~~--~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~ 136 (392) T protein:vir:39 61 LQLSSDLAIVKINAEKKK--NQGIID--NPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYY 136 (392) T ss_pred HHHHHhhccCceeeccch--hhhHhh--cCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 777777777777654222 111221 1132 345567778899999999999999988886 68889999988776 Q ss_pred cCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccce Q lcl|Aclame:pro 163 DSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF 242 (479) Q Consensus 163 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 242 (479) +.... .+ +|.....+ ........+.++.+.+++... + T Consensus 137 ~~~~~-~~-----~y~~~~~~-~~~~~~~~~~~~eiih~~~~~------------------------------~------ 173 (392) T protein:vir:39 137 FEYEN-GM-----YYNITFDD-PKIEPILQAPQSDLIHMKLLS------------------------------I------ 173 (392) T ss_pred cCCCc-eE-----EEEEEecC-cccceeEEEccccEEEecCCC------------------------------C------ Confidence 65321 11 12221111 111112223344444332100 0 Q ss_pred EEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCC-ccchhhHHH--------HhhcccceecCCCC Q lcl|Aclame:pro 243 IPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYP-GTSLQEFID--------NIRYYKSIKVDGGG 313 (479) Q Consensus 243 v~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~-~~~~~~~~~--------~~~~~~~~~~~~~~ 313 (479) .....|.|.+..+...++............+...+.|-.+++-.. ....++... ....++++.++++. T Consensus 174 ---~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~ 250 (392) T protein:vir:39 174 ---DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLE 250 (392) T ss_pred ---CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHhccccCCCeeecCCCc Confidence 011357888887777776666655555555666666755543211 111121111 11223456666665 Q ss_pred cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDK-S-GVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCE 391 (479) Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~-S-g~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 391 (479) +++.+..+.....+.+..+..++.|+..-+.|+.-.+..+.. | .++. ...+...|.-.++.+.. T Consensus 251 ~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~~~~~~--------------~~f~~~~l~P~~~~ie~ 316 (392) T protein:vir:39 251 EFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI--------------SGMYASALNRYLRPAIS 316 (392) T ss_pred eEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHH--------------HHHHHHHHHHHHHHHHH Confidence 665555555555677778888888888878776555433221 1 1111 11233333333333333 Q ss_pred HHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 392 YLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNH---PWVEDVNDELERLKKQEDTQKEYDD 466 (479) Q Consensus 392 ~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l---~~~~d~~~El~~i~~E~~~~~~~~~ 466 (479) .+...-.. ++++......-.|..+.+..+.++ +|+++...+.+++ |+..+ |+.+. + T Consensus 317 ~l~~~L~~-----~~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~---e~r~~-----------e 377 (392) T protein:vir:39 317 ELEYKLSD-----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAP-----------E 377 (392) T ss_pred HHHHhccc-----cccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCcc---ccchh-----------c Confidence 22221111 122222233334666677777775 5789998877654 55432 32211 1 Q ss_pred ccCCCCCCCcCCC Q lcl|Aclame:pro 467 LIPNNQDGVIDET 479 (479) Q Consensus 467 ~~~~~~~~~~det 479 (479) ..+...+|.+.|- T Consensus 378 ~l~~~~~Gd~~~p 390 (392) T protein:vir:39 378 NTNKKTTGQSNEP 390 (392) T ss_pred CCCCCCCCCCCCC Confidence 1222232322222 No 181 >protein:vir:78942 Length: 510 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522822;genbank:gi:158345057;genbank:GeneID:5687432 Probab=97.88 E-value=1.3e-05 Score=47.37 Aligned_cols=428 Identities=12% Similarity=0.022 Sum_probs=178.2 Q ss_pred HHHHHHHHHHHhhH-HHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhcc--C--- Q lcl|Aclame:pro 24 LVKVIEHYILKHRP-EKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGN--P--- 97 (479) Q Consensus 24 ~~~~i~~~~~~~~~-~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~--~--- 97 (479) ..+.+....++.+. ......+++++ +-+|+.-. +.+... .....+..-+.+...++.+|+.|.+- | T Consensus 1 mk~~~~~~~~~lkr~~~e~~w~e~a~--~tlP~~~~----~~~~~~--~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~~ 72 (510) T protein:vir:78 1 MKSTAAMLWEKLRDGSVEQRAIEFAK--TTLPYLMV----DPMSGS--RGVVEHDFQSAGALLVNNLAAKLARSLFPTGI 72 (510) T ss_pred ChhHHHHHHHHHhccchHHHHHHHHH--hhcccccc----CCCCcc--cccccCcccchHHHHHHHHHHHHHHhhcCCCC Confidence 33333332222222 22333334443 11221100 000000 01111233455666677777666543 1 Q ss_pred --eeecCCch-------------hHHHH--------HHHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 98 --IVFNADDD-------------NLTKL--------LNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIP 154 (479) Q Consensus 98 --~~~~~~~~-------------~~~~~--------~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~ 154 (479) +++...++ ++.+. ...+..++|.....++.++...+|.+.+++ ++++. +++.++ T Consensus 73 ~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~--~~~~~-~~~~~p 149 (510) T protein:vir:78 73 PFFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALLYR--NSDEA-TVVAWS 149 (510) T ss_pred cccccCCChHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEEE--eCCCC-eEEEEE Confidence 22322221 12222 223445789999999999999999987655 44443 456665 Q ss_pred cceeEEEEcCCCCCceEEEEEEEeeec---------------ccCceEEEEEEEeCCcEEEEEEcC-Ccccccccccccc Q lcl|Aclame:pro 155 AEEAIPIWDSKRQRELVAFIRFYYIED---------------IDGNKIKRVEYYTENDITYFIERG-NSFIQEFLYDEYG 218 (479) Q Consensus 155 p~~~~~~~d~~~~~~~~~~i~~~~~~~---------------~~~~~~~~~~~y~~~~i~~~~~~~-~~~~~~~~~~~~~ 218 (479) -.++++ -.+.. .++...++.++..- .+.+....+++|+. ++ ...+ +..... T Consensus 150 l~~y~v-~~d~~-G~vd~i~rr~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~--V~--~~~~~~~~~~s------- 216 (510) T protein:vir:78 150 LRSYAV-RRDAT-GRWMDIVLKQRYKSKDLDDVYKQDLMRAGRNLSGSGSVDLYTH--VQ--RRKGTAMDYAE------- 216 (510) T ss_pred cceeEE-eeCCC-cCeeEEEeeeeccHHHHHHHhhHHhhhhhhccCCCceEEEEEE--EE--eecCCCCcEEE------- Confidence 555443 33333 34544555544420 01112223333331 11 1111 000000 Q ss_pred ccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccc Q lcl|Aclame:pro 219 KMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTS 293 (479) Q Consensus 219 ~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~ 293 (479) ..... ++.........++..+|++.+. ++.+|+|-.++..+-+..+|...-...........|.+.+.-.+... T Consensus 217 v~~e~-dg~~i~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a~~~~~lv~p~g~~~ 295 (510) T protein:vir:78 217 MYHEI-DGVRVGETGRWPIHLCPYIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELESLEVLNLVDEAKGAV 295 (510) T ss_pred EEEEe-cCeeeccccccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCccccc Confidence 00001 1111122233446667777654 34689999999999999999887777766666666654432111111 Q ss_pred hhhHHHHhhcccceecCCCCcceeeecC--CCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 294 LQEFIDNIRYYKSIKVDGGGGVDKLEIN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKC 371 (479) Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~ 371 (479) ... ... ...+.+.....++++.+... .+.......++.++..|...-.. ++..-+....||+.+...-....+.. T Consensus 296 ~~~-l~~-~~~g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aF~~-~l~~~~~~rvTAtEV~~r~~E~~~~L 372 (510) T protein:vir:78 296 VDD-YQD-AEMGDYVPGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQAFMY-GANQRDAERVTAEEVRITAEEAENTL 372 (510) T ss_pred hhh-hcc-CCCceeecCCcccccccccCcccchHHHHHHHHHHHHHHHHHHhh-ccccCCCCCcCHHHHHHHHHHHHHHh Confidence 111 111 11123333334456665432 45566677777777777654332 22222334568888776544443333 Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhcCCCccc---cceeeEEeCCCCCCCHH-HHHH----HHHHHhc---c---CChHH Q lcl|Aclame:pro 372 SK-TEKKFKKAIRELLWFVCEYLKISGNKSYD---YKTVQITFNHSMIINEA-EKID----MAAKSTG---I---VSDET 436 (479) Q Consensus 372 ~~-~~~~~~~~l~~~~~li~~~~~~~~~~~~~---~~~i~i~f~~~~p~d~~-e~a~----~~~k~~g---~---is~et 436 (479) .- ..+.-.+.+.-+++..+.++...+..+.. .....|++..++-+... +.+. .+..+.+ + +.... T Consensus 373 Gpv~~rl~~E~l~Pli~r~~~il~r~gl~p~p~~~~~~~~v~~is~Laraq~~~~l~~~~q~l~~~~~~~q~~~~id~d~ 452 (510) T protein:vir:78 373 GGTYSLLAENLQSPLAYVCLSEVDDALLQGLITKQHKPAIETGLPALSRSAAVQSMLNASQVIAGLAPIAQLDPRISLPK 452 (510) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccccceeeecccHHHHHHHHHHHHHHHHHHHHhcChhhhhhcCCHHH Confidence 21 22222223333333333333333322211 12223333333333211 1111 1111111 1 22333 Q ss_pred HHH----hCCCCC----CHHHHHHHHHHHHHHHHhhhhc-cCCCCCCCcCCC Q lcl|Aclame:pro 437 IVS----NHPWVE----DVNDELERLKKQEDTQKEYDDL-IPNNQDGVIDET 479 (479) Q Consensus 437 ~~~----~l~~~~----d~~~El~~i~~E~~~~~~~~~~-~~~~~~~~~det 479 (479) ++. .+|-.. -.++|++++.+++++++...+. ......+.++-. T Consensus 453 ~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~~q~~~~~~~~~a~~~~~~~~~ 504 (510) T protein:vir:78 453 MMDTIWAAFSVDTSQFYKSADELQAEAEEQRRQAAQAQAAQETLLEGASDMT 504 (510) T ss_pred HHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc Confidence 332 334201 1356777766654322211110 001111111111 No 182 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=97.86 E-value=1.4e-05 Score=47.14 Aligned_cols=428 Identities=11% Similarity=0.041 Sum_probs=163.4 Q ss_pred ccCcHHHHHHHHhccChHHHHHHHHHHHHHh---------hHHHHHHHHHHhccCCcccccccccccc--cccc-ccccc Q lcl|Aclame:pro 5 YISETDLIKVQLKKESTINLVKVIEHYILKH---------RPEKYKQGEEYYYGNTDVNNKRRYYLLD--GAKV-DDFTK 72 (479) Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~yy~g~~~~~~~~~~~~~~--~~~~-~~~~~ 72 (479) +--|.+.- .-+.+.+..++.+-.+..+... +....+.+.+.-+++......+...... .+.. .+..+ T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (574) T protein:vir:80 1 MPKWLDKA-LGIEKSSIEETRNMENYKMHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIR 79 (574) T ss_pred Ccchhhhh-hccchhhHHHHHhhhhhccccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhccccccccCcCccC Confidence 11111110 0011112222222222110000 0001122333333332211111100000 0000 00000 Q ss_pred C--c------ceeecchHHHHHHHHHhhhh-----------ccCeeec---CCc----hh--HHHHHHHHHhc------- Q lcl|Aclame:pro 73 V--N------NKAINNYHKLLVDQKVGYSV-----------GNPIVFN---ADD----DN--LTKLLNDLLGE------- 117 (479) Q Consensus 73 ~--~------~ri~~n~~~~iv~~~a~~l~-----------g~~~~~~---~~~----~~--~~~~~~~~~~n------- 117 (479) . + .-...++...+++..+..++ +-|+.+- .+. .+ ....+..+..+ T Consensus 80 ~~~~~~~~l~~~~~~~iv~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP 159 (574) T protein:vir:80 80 NSQDLHKTLKKFGNNIILNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDP 159 (574) T ss_pred CcccHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCC Confidence 0 0 00012334444444443222 2344331 111 11 11112222211 Q ss_pred ---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEE Q lcl|Aclame:pro 118 ---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYY 193 (479) Q Consensus 118 ---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y 193 (479) .+..+...+..+.+.+|.+|+.+..+.+|+| .+..++|..+.+..+..... .....+++... ++. ....+ T Consensus 160 ~~~s~~ef~~~lv~~lll~Gnayi~i~r~~~G~~~~L~pl~p~~V~v~~d~~~~~-~~~~~~y~~~~--~g~---~~~~~ 233 (574) T protein:vir:80 160 NRDNFTTFCKKLVRATYMYDQVNFEKVFDKDGNFIKFDTVDPTTIFLATNGEGKL-IKNGERFVQVI--DNR---IVAKF 233 (574) T ss_pred ccccHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccc-ccCceEEEEEe--CCc---eEEEE Confidence 2345667788889999999999988888886 47889999998876653210 01112222221 111 11223 Q ss_pred eCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 194 TENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLA 273 (479) Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~ 273 (479) ..+.+.+++... ..+.+ ....|.|.++.+...++....+..... T Consensus 234 ~~~eiih~~~~~---------------------------~~~~~---------~~~~G~spi~~a~~~i~~~~~a~~~~~ 277 (574) T protein:vir:80 234 NERELAFAVRNP---------------------------RADIE---------VGQYGYPELEIALKQFIAHENTEVFND 277 (574) T ss_pred ccccEEEEeccC---------------------------CCCcc---------cccccccHHHHHHHHHHHHHHHHHHHH Confidence 334444332110 00000 112477888877777776666655566 Q ss_pred HHHHHhccceeee--ecCCccchh---hHHHHh--------hcccc-eecCCCCcceeeecCCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 274 DNLDEIQEVIYVL--KEYPGTSLQ---EFIDNI--------RYYKS-IKVDGGGGVDKLEINIPVEAKKELLDRLEKNII 339 (479) Q Consensus 274 ~~~~~~~~p~l~~--~g~~~~~~~---~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 339 (479) +.+...+.|-.++ ++......+ .+...+ ..+++ +.++++.+++.+..+.....+.+..+...+.|. T Consensus 278 ~~f~ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~D~qfle~~~~~~~~Ia 357 (574) T protein:vir:80 278 RFFSHGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVSAEDVKFVNMTPSANDMQFEKWLNYLINVIS 357 (574) T ss_pred HHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEEccCChhHHHHHHHHHHHHHHHH Confidence 6666666676444 332211111 111111 11222 333444455555444445567777788888888 Q ss_pred HHhCCCCCccccccc--ccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCC Q lcl|Aclame:pro 340 IFGQGVNPESQNTGD--KSGVALKF-LYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMII 416 (479) Q Consensus 340 ~~s~~~~~~~~~~g~--~Sg~Ai~~-~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~ 416 (479) ..-++|+.-.+.... .+|..... -++... ......+...|.-+++.+...+...--.... ..+.+.|...-.. T Consensus 358 ~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E---~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~-~~~~~~f~~~d~~ 433 (574) T protein:vir:80 358 ALYGIDPAEINFPNNGGATGSKGGSLNEGNSK---EKMQASQNKGLQPLLRFIEDTVNTYIVAEFG-EKYQFQFRGGDLS 433 (574) T ss_pred HHhCCCHHHhcccccccccccccccccchhHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC-CceEEEecccchh Confidence 888888754432211 11100000 000000 0011111122222222222222111000111 2356778766666 Q ss_pred CHHHHHHHHHH-HhccCChHHHHHhCCC--CCCHH--------HHHHH------HHHHHHHH---HhhhhccCCCCCCCc Q lcl|Aclame:pro 417 NEAEKIDMAAK-STGIVSDETIVSNHPW--VEDVN--------DELER------LKKQEDTQ---KEYDDLIPNNQDGVI 476 (479) Q Consensus 417 d~~e~a~~~~k-~~g~is~et~~~~l~~--~~d~~--------~El~~------i~~E~~~~---~~~~~~~~~~~~~~~ 476 (479) +..+...+... .+|+++.-.++++++. ++.-+ ..+.. ...+.++. ....+..+....... T Consensus 434 ~~~~~~~~~~~~~~G~lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (574) T protein:vir:80 434 AQLDKLKIIEQEGKVFRTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQDRLNRLLELSGGDVEQPEP 513 (574) T ss_pred hHHHHHHHHHHHhCCccCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchhccccccccccCCCCCCCCC Confidence 66665554332 3689999999887643 22100 00000 00000000 001111111111111 Q ss_pred CCC Q lcl|Aclame:pro 477 DET 479 (479) Q Consensus 477 det 479 (479) ++. T Consensus 514 ~~p 516 (574) T protein:vir:80 514 EEP 516 (574) T ss_pred CCC Confidence 110 No 183 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=97.84 E-value=1.5e-05 Score=46.98 Aligned_cols=393 Identities=11% Similarity=0.030 Sum_probs=171.0 Q ss_pred HHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhh Q lcl|Aclame:pro 14 VQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYS 93 (479) Q Consensus 14 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l 93 (479) +-+.. -+.+... ...++.....+.|-|.... ..+..... .. ....-...+.....|+.++.-+ T Consensus 1 ~~~~~------~~~~~~p---~~~~~~~~~~~~~~~~~~~-g~~~~~~~--~~-----~~~~~~~~~~V~acV~~IA~~i 63 (518) T protein:vir:78 1 MLLAN------GQTLSAP---AMAELSPQMQDSYYYAPAV-GMQLERQF--SL-----YGGIYKNQPWVRTVIAKRAQAL 63 (518) T ss_pred CcccC------ceeeccc---hhhhhhhhhhhccccccee-ceeccccc--ch-----hhHHhhhhHHHHHHHHHHHHhh Confidence 00000 0000000 0001111222222222110 00000000 00 0000011234455677777777 Q ss_pred hccCeeec---CCc--hhHHHHHHHHH-h-cC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEE Q lcl|Aclame:pro 94 VGNPIVFN---ADD--DNLTKLLNDLL-G-EE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIW 162 (479) Q Consensus 94 ~g~~~~~~---~~~--~~~~~~~~~~~-~-n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~ 162 (479) .+-|+.+- .+. +.....+..+. . |. ...+...+....+.+|.+|+.+..+.+|++ .+..++|..+.+.. T Consensus 64 A~lp~~l~~~~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~ 143 (518) T protein:vir:78 64 ARLPVKCMFTSGDTETEEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKR 143 (518) T ss_pred ccCceEEEEEcCCccccccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEE Confidence 77776641 111 11111222222 2 32 335556778889999999999999988886 58889999998877 Q ss_pred cCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccce Q lcl|Aclame:pro 163 DSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF 242 (479) Q Consensus 163 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 242 (479) +.... .. .|.....++... ....+..+.+.+++.- ++- T Consensus 144 ~~~~~-~~-----~y~~~~~~~~~~-~~~~~~~~eIiHir~~------------------------------~~d----- 181 (518) T protein:vir:78 144 NSRTG-RY-----EYYFQAGAGVGT-QLVSFADDEVVPIRFF------------------------------NPD----- 181 (518) T ss_pred cCCCC-EE-----EEEEEecCCccc-eeEEecCCcEEEecCC------------------------------CCC----- Confidence 75432 11 111111111111 1112333333333210 000 Q ss_pred EEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---HHHHh--------hcccceecCC Q lcl|Aclame:pro 243 IPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---FIDNI--------RYYKSIKVDG 311 (479) Q Consensus 243 v~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---~~~~~--------~~~~~~~~~~ 311 (479) ....|.|.+..+...+...........+.+...+.|-.+++.......+. +...+ ..++++.+++ T Consensus 182 ----g~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~ls~e~~~~~k~~~~~~~~G~~nag~~~vL~~ 257 (518) T protein:vir:78 182 ----GLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSPEAQQRLREQFDRAHAGSSNTGKTMVVEE 257 (518) T ss_pred ----cccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHHHHhcCcccCCceeEcCC Confidence 01247777776666666665555555555666777766665432211111 11111 1234566676 Q ss_pred CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCE 391 (479) Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 391 (479) +.+++.++.+.....+.+..+.....|...-++|+.-.+..++.+...++...... +...|.-++..|.. T Consensus 258 G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~~st~sn~e~~~~~f----------~~~tL~P~~~~ie~ 327 (518) T protein:vir:78 258 GMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMRAF----------YRDTMAIPIARIQS 327 (518) T ss_pred CceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHHHH----------HHHHHHHHHHHHHH Confidence 66666666554455566777777788888777776544433222222222111111 12222222222222 Q ss_pred HHHhcCCCc-cccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHH-H------HHHHHHHHH Q lcl|Aclame:pro 392 YLKISGNKS-YDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVND-E------LERLKKQED 459 (479) Q Consensus 392 ~~~~~~~~~-~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~-E------l~~i~~E~~ 459 (479) .+...-... .....+++.....+..|..+.++++.++ .|+++.-.++++++. ++++.. + +..+..-.. T Consensus 328 eln~~L~~~~~~~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~gl~pie~~~gD~~~v~~n~~pl~~~~~ 407 (518) T protein:vir:78 328 AMDKYVGQYWVRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKADELYANSALQPLGATPD 407 (518) T ss_pred HHHHhhcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccceecccccc Confidence 111110000 0112445555677788999999998886 578999989888754 222111 1 111111000 Q ss_pred H-----HHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 460 T-----QKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 460 ~-----~~~~~~~~~~~~~~~~det 479 (479) . +.+..+.....+.+..|+. T Consensus 408 ~~~~g~~~~~~~~~~~~~~~~~~~~ 432 (518) T protein:vir:78 408 GAVEGEEAPAPKRPASTPVASLDQS 432 (518) T ss_pred cccCCCCCCCCCCCCcccccccccC Confidence 0 0000000000000011110 No 184 >protein:vir:7017 Length: 515 # NCBI annotation: head portal protein # Family: family:all:481 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853590;genbank:gi:31711672;genbank:GeneID:1481798 Probab=97.83 E-value=1.6e-05 Score=46.85 Aligned_cols=424 Identities=10% Similarity=0.080 Sum_probs=189.1 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHH---HHHHHHHHhccCCcccccccccccccccccccccCcceeecchHH Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPE---KYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHK 83 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~ 83 (479) |.-+.+.. +.....+.+..+.+ .++|.. +.+.+.+|..- +. + .+. ...+...++.-+-+. T Consensus 1 ~~~~~~~~---~~~~~~l~~r~~~L-k~~R~~~e~~w~e~~~~tlP-----~~--~--~~~----~~~~~~~~~~dstg~ 63 (515) T protein:vir:70 1 MQDTILEY---GGQRSKIPKLWEKF-SKKRSPYLDRAKHFAKLTLP-----YL--M--NNK----GDNETSQNGWQGVGA 63 (515) T ss_pred Ccchhhhh---cCCHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhcc-----cc--c--CCC----CCcccccccccchHH Confidence 33223332 22333344554443 223433 33444444332 11 0 000 001111233445566 Q ss_pred HHHHHHHhhhhcc------C-eeecCCch-------------hHHH--------HHHHHHhcCHHHHHHHHHHHHHhCCe Q lcl|Aclame:pro 84 LLVDQKVGYSVGN------P-IVFNADDD-------------NLTK--------LLNDLLGEEFDDTITELYLNASNKGV 135 (479) Q Consensus 84 ~iv~~~a~~l~g~------~-~~~~~~~~-------------~~~~--------~~~~~~~n~~~~~~~~~~~~~~~~G~ 135 (479) ..++.+|+.|.+- | +++...+. ..++ +...+..++|.....++.++...+|. T Consensus 64 ~a~~~LAa~l~~~ltpp~~~WF~l~~~d~~~~~l~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~ 143 (515) T protein:vir:70 64 QATNHLANKLAQVLFPAQRSFFRVDLTAKGEKVLDDRGLKKTQLATIFARVETTAMKALEQRQFRPAIVEVFKHLIVAGN 143 (515) T ss_pred HHHHHHHHHHHHhhcCCCCcccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhHCe Confidence 6677777666543 1 22322111 1111 22234457999999999999999999 Q ss_pred EEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecc-----------------cCceEEEEEEEeCCcE Q lcl|Aclame:pro 136 EWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDI-----------------DGNKIKRVEYYTENDI 198 (479) Q Consensus 136 ~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~-----------------~~~~~~~~~~y~~~~i 198 (479) +++++ |+++. +++++-.+++ +-.+.. .++..++|.++..-. ..+....+++|+. + T Consensus 144 a~l~~--d~~~~--~~~~pl~~y~-v~~d~~-G~v~~i~rr~~~t~~~l~~~f~~~~~~~~~~~~~~~~~~v~i~~~--v 215 (515) T protein:vir:70 144 CLLYK--PSKGA--MSAVPMHHYV-VNRDTN-GDLMDVILLQEKALRTFDPATRMAIEVGMKGKKCKEDDNVKLYTH--A 215 (515) T ss_pred EEEEE--eCCCC--eEEEEcCeEE-EeeCCC-cCeeEEEeeeeccHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEE--E Confidence 97655 56655 4455555544 333333 345545554443210 0011112233321 0 Q ss_pred EEEEEcCCccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 TYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLA 273 (479) Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~ 273 (479) . ....+.+. ..... ++.........+|..+|++.+. ++.+|+|-.++..+-+..+|...-... T Consensus 216 ~--~~~~~~~~---------~~~e~-d~~~~~~es~y~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l 283 (515) T protein:vir:70 216 Q--YAGEGFWK---------INQSA-DDIPVGKESRIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAMA 283 (515) T ss_pred E--ecCCCceE---------EEEec-CceeeccccccccccCCceeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHH Confidence 0 00000000 00111 1111222333346667777654 346899999999999999999888888 Q ss_pred HHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeeec--CCCHHHHHHHHHHHHHHHHHHhCCCCCcccc Q lcl|Aclame:pro 274 DNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEI--NIPVEAKKELLDRLEKNIIIFGQGVNPESQN 351 (479) Q Consensus 274 ~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~ 351 (479) ........|.+.+.-.+....... .....+.+.....++++.+.. ..+....+..++.++..|...-....+...+ T Consensus 284 ~~~~~a~~p~~lv~~~g~~~~~~l--~~~~~g~iv~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~rd 361 (515) T protein:vir:70 284 RGAALMADIKYLIRPGSQTDVDHF--VNSGTGEVITGVAEDIHIVQLGKYADLTPISAVLEVYTRRIGVIFMMETMTRRD 361 (515) T ss_pred HHHHHhcCCCeeeCcccccchhhc--cccCCceeecCCcccceeeecCcccchhHHHHHHHHHHHHHHHHHhhhhhhccC Confidence 888888888776642211111111 111112333444556666653 3456667777777777775543322222222 Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCCccccceeeEEeCCCCCCCHHHHH---H Q lcl|Aclame:pro 352 TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWF-----VCEYLKISGNKSYDYKTVQITFNHSMIINEAEKI---D 423 (479) Q Consensus 352 ~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~l-----i~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a---~ 423 (479) ....||+.+.. +..++...++..+.++-.- +.+.+.... ...+...+.+.+.. +.+.+..+ + T Consensus 362 ~~rvTAtEV~~-------r~~E~~~~LGpv~srL~~Ell~Pli~r~~~~~~-p~~P~~~v~~~~vs--~l~~L~r~q~~~ 431 (515) T protein:vir:70 362 AERVTAVEIQR-------DALEIEQNMGGVYSLFAMTMQTPIAMWGLQEAG-DSFTSELVDPVIVT--GIEALGRMAELD 431 (515) T ss_pred CccccHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhC-CCCChhhcccceeh--hHHHHHHHHHHH Confidence 23468888765 4555566666665554221 111111111 12222223443322 22222221 2 Q ss_pred HHHHH---hc-----------cCChHHHH----HhCCCCC---CHHHHHHHHHHHHHHHHh----hhhccCCCCCCCcCC Q lcl|Aclame:pro 424 MAAKS---TG-----------IVSDETIV----SNHPWVE---DVNDELERLKKQEDTQKE----YDDLIPNNQDGVIDE 478 (479) Q Consensus 424 ~~~k~---~g-----------~is~et~~----~~l~~~~---d~~~El~~i~~E~~~~~~----~~~~~~~~~~~~~de 478 (479) .+... .+ .+....++ ..++..- -.++|++++.++++++.. .........++.+|+ T Consensus 432 ~i~~~~q~i~~~~~~~p~~~~~id~d~~~~~~a~~~g~p~~~~rs~eev~~~r~q~~~~~~~~~~~~~~~~a~~~~~~~~ 511 (515) T protein:vir:70 432 KLANFAQYMSLPQTWPEPAQRAIRWGDYMDWVRGQISAELPFLKSEEEMQQEMAQQAQAQQEAMLNEGVAKAVPGVIQQE 511 (515) T ss_pred HHHHHHHHHHHHhccChhHHhhCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhh Confidence 11111 11 12211222 2222111 235667666555432221 112222223333333 Q ss_pred C Q lcl|Aclame:pro 479 T 479 (479) Q Consensus 479 t 479 (479) . T Consensus 512 ~ 512 (515) T protein:vir:70 512 M 512 (515) T ss_pred h Confidence 3 No 185 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=97.80 E-value=1.9e-05 Score=46.53 Aligned_cols=383 Identities=10% Similarity=-0.006 Sum_probs=166.0 Q ss_pred CCCcccCcHHHHHH----------------------HHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccc Q lcl|Aclame:pro 1 MLNIYISETDLIKV----------------------QLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRR 58 (479) Q Consensus 1 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~ 58 (479) |+..-.-+-..+.. .........+...+.. ...+..+.+. T Consensus 1 m~kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~------~~~~~ly~~m------------ 62 (448) T protein:vir:77 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQG------KDGLLVYHKM------------ 62 (448) T ss_pred CCCCCCCCcccCCcccccchhhhhhhccchhhhcccccccccccchhHhhcc------ccchHHHHHH------------ Confidence 44333222211111 1111111111111100 0000000000 Q ss_pred ccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecC--Cc---hhHHHHHHHHHhc--------CHHHHHHH Q lcl|Aclame:pro 59 YYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNA--DD---DNLTKLLNDLLGE--------EFDDTITE 125 (479) Q Consensus 59 ~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~--~~---~~~~~~~~~~~~n--------~~~~~~~~ 125 (479) .......-.+.+....+.+.+.++.. ++ ....+++..+... +|...+.. T Consensus 63 ------------------~~D~hi~s~l~~Rk~av~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~ 124 (448) T protein:vir:77 63 ------------------LSDGTVKNALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAI 124 (448) T ss_pred ------------------hhChHHHHHHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHH Confidence 01244455667777777888888763 22 2233445555432 56766666 Q ss_pred HHHHHHhCCeEE-EEEEe-CCCCceEEEEE---cccee-EEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEE Q lcl|Aclame:pro 126 LYLNASNKGVEW-LHPYI-NRKGEFKYVII---PAEEA-IPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDIT 199 (479) Q Consensus 126 ~~~~~~~~G~~~-~~v~~-d~~~~~~i~~~---~p~~~-~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~ 199 (479) + .++..||.++ +.+|. ..+|...+..+ +|... ...|++... + .+.+.. T Consensus 125 ~-lda~~~G~s~~Eivw~~~~dg~~~~~~l~~r~~~~~~~f~~~~~~~--l--------------------~~~~~~--- 178 (448) T protein:vir:77 125 Y-ENAYIYGMAAGEIVLTLGADGKLILDKIVPIHPFNIDEVLYDEEGG--P--------------------KALKLS--- 178 (448) T ss_pred H-HHhhhhcceeEEEEEeecCCCceeeccccccCCCccceeeeecCCc--e--------------------EEEecC--- Confidence 6 5899999864 56664 35666533222 22211 111222111 0 000000 Q ss_pred EEEEcCCccccccccccccccccccccccccccccccccccceEEec--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 YFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK--NNEKCVSDLTFYKSLIDIYDNNISTLADNLD 277 (479) Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~--n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~ 277 (479) +.+.. +....+..+-|++.+=+.+.. .+..|.|.+..+....--=+..+.+++.-++ T Consensus 179 ------~~~~~---------------~~~~~~~~~lP~~~~i~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E 237 (448) T protein:vir:77 179 ------GEVKG---------------GSQFVNGLEIPIWKTVVFLHNDDGSFTGQSALRAAVPHWLAKRALILLINHGLE 237 (448) T ss_pred ------Ccccc---------------cccCCCccccccceEEEEecCCcCCcccchHHHHHHHHHHHHHhhHHHHHHHHH Confidence 00000 000001112233333111111 1345778887766554445566788888999 Q ss_pred HhccceeeeecCCccchh-h-------HHHHhh--cccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 278 EIQEVIYVLKEYPGTSLQ-E-------FIDNIR--YYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNP 347 (479) Q Consensus 278 ~~~~p~l~~~g~~~~~~~-~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~ 347 (479) .++.|+.+.+...+...+ + ....+. ...+..++.+.++++++.......+...++...+.|...-.+..+ T Consensus 238 ~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~~iiP~g~~ie~~ea~~~~~~~~~~i~~~d~~Isk~iLGqtl 317 (448) T protein:vir:77 238 RFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARALGIDFN 317 (448) T ss_pred HcCCceeEEecCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecCCCccCHHHHHHHHHHHHHHHHhcccc Confidence 999999998854332211 1 122222 233456888999999998766666778888888888665444444 Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 348 ESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIR-ELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAA 426 (479) Q Consensus 348 ~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~ 426 (479) +.+..|..++.+......-....+..-.+.+...+. ++++-++ ....+.. .....+.|....+.|..+.++.+. T Consensus 318 Ts~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~---~lNfg~~--~~~P~~~f~~~e~eDl~~~a~~~~ 392 (448) T protein:vir:77 318 TVQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLV---LPNWPGA--TRFPRLTFEMEERNDFSAAANLMG 392 (448) T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCC--CCCCEEEecCCChhhHHHHHHHhH Confidence 444333322223221111111112233333444443 2333333 2222221 123478888888999999999888 Q ss_pred HHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCC--CCcCCC Q lcl|Aclame:pro 427 KSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQD--GVIDET 479 (479) Q Consensus 427 k~~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~--~~~det 479 (479) ++++.+ .+.++. ..+..+. +.....+............. ....+| T Consensus 393 ~l~~~~-----~~~~~i-p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (448) T protein:vir:77 393 MLINAV-----KDSEDI-PTELKAL--IDALPSKMRRALGVVDEVREAVRQPADS 439 (448) T ss_pred HHHHHH-----HHHhcC-CccCCcC--CCCCchhcccccCCCCCCCchhhcchhh Confidence 887542 222221 1110010 00000000000000000000 011111 No 186 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=97.79 E-value=1.9e-05 Score=46.46 Aligned_cols=392 Identities=12% Similarity=0.060 Sum_probs=184.7 Q ss_pred CC-CcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccccccccc----ccccccccCcc Q lcl|Aclame:pro 1 ML-NIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDG----AKVDDFTKVNN 75 (479) Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~----~~~~~~~~~~~ 75 (479) |. -+|..+..-+.+...+ ..+...|.. + ....++..+.. .+.+....+... ...... T Consensus 1 m~~~i~~~~g~p~~~~~~~---~~~~~~ia~-----~----~~~~~~~~~~~-~~~~~~~iLr~~~~~~~~y~~m----- 62 (491) T protein:vir:10 1 MSKGLWVSPTEFVTFGEPD---KSLSSQIAT-----R----ARSIDFFALGM-YLPNPDPVLKALGKDIRVYREL----- 62 (491) T ss_pred CCCceeCCCCCccCcccCC---hHHHHHHHh-----h----hcccccccccC-CccchHHHHHhcCCCHHHHHHH----- Confidence 32 2444444443322211 112222211 0 00001111000 011110000000 000000 Q ss_pred eeecchHHHHHHHHHhhhhccCeeecC--CchhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeE-EEEEEeCCCCceE-- Q lcl|Aclame:pro 76 KAINNYHKLLVDQKVGYSVGNPIVFNA--DDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVE-WLHPYINRKGEFK-- 149 (479) Q Consensus 76 ri~~n~~~~iv~~~a~~l~g~~~~~~~--~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~-~~~v~~d~~~~~~-- 149 (479) .......-.+.+...-+.+.+.++.+ +++...+.+..+. +-+|+..+..+. ++..||.+ ++.+|...+|... T Consensus 63 -~~D~~i~s~l~~Rk~av~~~~w~i~~~~~~~~~~e~v~e~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~ 140 (491) T protein:vir:10 63 -RADAHVGGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIVTEML-DAVLYGYQPMEITWGKVGNYIVPI 140 (491) T ss_pred -hhChHHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeEEE Confidence 12456667788888888899988864 3344455555554 347888887775 78889986 5556654445443 Q ss_pred -EEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccc Q lcl|Aclame:pro 150 -YVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHF 228 (479) Q Consensus 150 -i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (479) +.+++|+.+. |++.. .+. +...+.... -..+ T Consensus 141 ~l~~r~~~~f~--~d~~~--~l~-----~~~~~~~~~---g~~l------------------------------------ 172 (491) T protein:vir:10 141 DVVGKPADWFV--YDPEN--QLR-----FRSKDHWMQ---GEEL------------------------------------ 172 (491) T ss_pred Eeeeeccccee--eccCC--ceE-----EecCCCCCC---ccee------------------------------------ Confidence 4445554332 33321 111 000000000 0000 Q ss_pred ccccccccccccceEEe--cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh------HHHH Q lcl|Aclame:pro 229 RINNKEQGWGKVPFIPF--KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE------FIDN 300 (479) Q Consensus 229 ~~~~~~~~~g~vPvv~~--~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~------~~~~ 300 (479) .+++.+-.++- ..+..|.|.+..+....---+..+.+++.-++.++.|+++.+-..+...++ .... T Consensus 173 ------~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~a~~~ek~~l~~al~~ 246 (491) T protein:vir:10 173 ------PARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRSASDGEKNLLLDCLED 246 (491) T ss_pred ------cCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCHHHHHHHHHHHHH Confidence 11111111111 124568888888877777777788899999999999999887543333222 2344 Q ss_pred hhcccceecCCCCcceeeecCC---CHHHHHHHHHHHHHHHHHHhCCCCCccccccc-ccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 301 IRYYKSIKVDGGGGVDKLEINI---PVEAKKELLDRLEKNIIIFGQGVNPESQNTGD-KSGVALKFLYSLLDLKCSKTEK 376 (479) Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~-~Sg~Ai~~~~~~l~~k~~~~~~ 376 (479) +....+..++.+.++++++... +...++..++...+.|...--+-.++.+..|. ..|.. .. .-....+..-.+ T Consensus 247 ~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt~~~gs~a~~~v-h~--~v~~di~~~D~~ 323 (491) T protein:vir:10 247 MVQDAVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIALLGQNQTTEATSTRASAQA-GL--EVTDDIRDGDKA 323 (491) T ss_pred HhcCcEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCcccchhHHHH-HH--HHHHHHHHHHHH Confidence 5666677889999999998643 34568888888888776544333333333222 22221 11 112223334445 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHh--cc-CChHHHHHhCCCCCCHHHHHHH Q lcl|Aclame:pro 377 KFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKST--GI-VSDETIVSNHPWVEDVNDELER 453 (479) Q Consensus 377 ~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~--g~-is~et~~~~l~~~~d~~~El~~ 453 (479) .+...+.++++-++.+ ... ..+ ...+.|.... .+....++.+.+++ |+ ++.+.+.+.++. ..++.+-.- T Consensus 324 ~i~~tln~li~~l~~~---N~~-~~~--~p~f~~~~~~-e~~~~~a~~~~~L~~~G~~i~~~~i~e~~Gi-p~~~~~~~~ 395 (491) T protein:vir:10 324 VVSEAMNMLIRWICDL---NFD-GAD--RPVFDMWEQE-QVDEIQAGRDQKLTQAGARFTPAYFKRAYNL-QDGDLDERP 395 (491) T ss_pred HHHHHHHHHHHHHHHh---cCC-CCC--cceEEecCcC-chhHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCcCccc Confidence 5666666655544433 222 222 2456665432 33456788888875 66 888888888874 222111000 Q ss_pred HHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 454 LKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 454 i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) . .. +.........+........++ T Consensus 396 ~-~~-~~~~~~~~~~~~~~~~~~~~~ 419 (491) T protein:vir:10 396 L-PV-SAVDTVGAASFAEFEAPDQDA 419 (491) T ss_pred c-cc-CCCCCcccccccccCCCCCCc Confidence 0 00 000000000001111111111 No 187 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=97.76 E-value=2.2e-05 Score=46.16 Aligned_cols=394 Identities=13% Similarity=0.088 Sum_probs=158.5 Q ss_pred CCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecch Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNY 81 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~ 81 (479) |=.|-|..-.+... +.+......+.. ......+||+ . +. ......+.--..++ T Consensus 1 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~--p--p~------------~~~~La~~~~~n~~ 53 (540) T protein:vir:41 1 MFNYHLSIKSLEKY----------RAIKGDTDSQAL-KEDRFEEYVE--P--KV------------HPLVLLSLLQVNPY 53 (540) T ss_pred CCCcccChhhccch----------hhhhcccccccc-ccCCCCcccc--C--CC------------CHHHHHHHHHhcHH Confidence 11111111110000 000000000000 0011111111 0 00 00000000012356 Q ss_pred HHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccce Q lcl|Aclame:pro 82 HKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEE 157 (479) Q Consensus 82 ~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~ 157 (479) ....|+..+..+.+-|+++..++.....++ .| ....+...++.+.+.+|.+|+.+..+..|++ .+..++|.. T Consensus 54 v~scI~~ia~~ia~~~~~i~~~~~~~~~~l----pN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~ 129 (540) T protein:vir:41 54 HASACSIKANDILRTGYLIDGDDGGVEELL----RACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHT 129 (540) T ss_pred HHHHHHHHHHHHhcCCceEecCccchhhhc----cCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcc Confidence 677899999999999998877665544332 22 3456677788899999999999999888876 588889988 Q ss_pred eEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 158 AIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGW 237 (479) Q Consensus 158 ~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (479) +.+..+... ++.. .++....++..|........ ..+. ....+ T Consensus 130 V~v~~~~~~---------~~~~--~d~~~~~~~~~~~~~~~~~~--~~g~-------------------------~~~~~ 171 (540) T protein:vir:41 130 VRVHRDGSR---------YMQT--WDGIHVTYFKDYRYEGEVNP--DNGE-------------------------DQDGV 171 (540) T ss_pred eEEeEcCce---------eEee--ecCceeeeeecccccceeec--cccc-------------------------cceee Confidence 876554321 1111 12222222222221111000 0000 00001 Q ss_pred cccceEEecC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeee--cCCccch-----------hhHHH Q lcl|Aclame:pro 238 GKVPFIPFKN-----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLK--EYPGTSL-----------QEFID 299 (479) Q Consensus 238 g~vPvv~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~--g~~~~~~-----------~~~~~ 299 (479) ..=-|+++++ ...|.|.+......+.....+.....+.+...+.|-.++. |...... +.+.. T Consensus 172 ~~~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~~~~~~~~~~~~ 251 (540) T protein:vir:41 172 GANEIIFIHLPSPICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMELGSDGEPTGRTVLQG 251 (540) T ss_pred cccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhccchHHHHHHHHHHHH Confidence 1111344432 2358887776666555554444444444555666655543 3211110 00111 Q ss_pred Hh---------hcccceecC----CCCcceeeecC--CCHHHHHHHHHHHHHHHHHHhCCCCCccccc----cc-ccHHH Q lcl|Aclame:pro 300 NI---------RYYKSIKVD----GGGGVDKLEIN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNT----GD-KSGVA 359 (479) Q Consensus 300 ~~---------~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~----g~-~Sg~A 359 (479) .. ..++++.+. .+++++|.... .....+.+..+...+.|+..-+.|+.-.+.. .+ .+.+. T Consensus 252 ~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~~~~~n~sn~eq 331 (540) T protein:vir:41 252 LIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLGITDVGPLGGNFAEV 331 (540) T ss_pred HHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccCCCCCcccHHH Confidence 11 112233332 12345554443 3345577778888888888888886544321 11 12222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCC--CCHHHHHHHHHHHhccCChHHH Q lcl|Aclame:pro 360 LKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMI--INEAEKIDMAAKSTGIVSDETI 437 (479) Q Consensus 360 i~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p--~d~~e~a~~~~k~~g~is~et~ 437 (479) ....+. ...+.-....+...|. ..+.... . ....+.|+..-. .|..+..+.+ ...|+++.-.+ T Consensus 332 ~~~~f~--~~tL~P~~~~ie~~ln-------~~L~~~~----~-~~~~i~f~~~~ll~~D~~~~~~~l-v~~G~lT~NE~ 396 (540) T protein:vir:41 332 ARRTYY--ESVVRPQQEIVSSVLT-------DFIQLKL----D-PGARFVFNEEILMESEFVHNYALL-VQCGVLTPSEV 396 (540) T ss_pred HHHHHH--HHHHHHHHHHHHHHHH-------Hhhhhcc----C-CceEEEecchhhcchHHHHHHHHH-HhCCCCCHHHH Confidence 211111 1111111122222222 1111111 1 134556654333 2333332222 23689998888 Q ss_pred HHhCCCCC---CHH--------HHHHHHHHHHHH---------HHhhhhccC--CCCCCCcCCC Q lcl|Aclame:pro 438 VSNHPWVE---DVN--------DELERLKKQEDT---------QKEYDDLIP--NNQDGVIDET 479 (479) Q Consensus 438 ~~~l~~~~---d~~--------~El~~i~~E~~~---------~~~~~~~~~--~~~~~~~det 479 (479) ++.|+..+ |+- .++..-+.+.+. ..+..+... ..++...+++ T Consensus 397 Re~L~g~e~gdd~~l~p~n~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 460 (540) T protein:vir:41 397 REKLFGLDGGPDMFMVPSSIGKSAMKRQKRNYEKNQINEIKRTYAKYKPRIQEIISSESPLEDK 460 (540) T ss_pred HHHhCcCcCCCcccccccccccccccccccccCCCCccccccccchhcccccCccccccccccc Confidence 87553332 211 111110000000 000000000 0000011111 No 188 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=97.72 E-value=2.5e-05 Score=45.82 Aligned_cols=369 Identities=12% Similarity=0.021 Sum_probs=164.6 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQ 88 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~ 88 (479) |..+..-..+.... ...+........-.+.+. ...+... .....+..+-....|+. T Consensus 1 M~~f~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-----------~~~~~~v---~~~~al~~~~v~~~i~~ 56 (386) T protein:vir:49 1 MPIFNITNLATESP----------PINQESFFDIADSDFLAS-----------LNSSEWV---SAENALKNSDLFSIISQ 56 (386) T ss_pred CchhhhhccCCCCc----------ccchhhhhhhhhcccccc-----------ccCCcee---chhhhhccHHHHHHHHH Confidence 11111110000000 000000000000000000 0000000 00001112333455677 Q ss_pred HHhhhhccCeeecCCchhHHHHHHHHHh-cCHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCC Q lcl|Aclame:pro 89 KVGYSVGNPIVFNADDDNLTKLLNDLLG-EEFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKR 166 (479) Q Consensus 89 ~a~~l~g~~~~~~~~~~~~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~ 166 (479) +|+-+.+-|+++.... ...++..=.. .....+...+....+.+|.+|+.+..+.+|++ .+.+++|..+.+..++.. T Consensus 57 ia~~ia~~p~~~~~~~--~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~~ 134 (386) T protein:vir:49 57 LSNDLATAKITTSRKQ--LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDNQ 134 (386) T ss_pred HHHHhhhCceeeccch--hhhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCCC Confidence 7777777787754322 2222211100 13355667788889999999999999888876 688899999887765432 Q ss_pred CCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEec Q lcl|Aclame:pro 167 QRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK 246 (479) Q Consensus 167 ~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~ 246 (479) . .+.+ .+...+..+. ....+....+.+++.. ++- T Consensus 135 ~-~~~y---~~~~~~~~~~---~~~~~~~~evih~~~~------------------------------~~~--------- 168 (386) T protein:vir:49 135 N-GLYY---NITFDDPHIA---PKQHVPQNDILHFRLL------------------------------SVD--------- 168 (386) T ss_pred c-eEEE---EEEEcCcccc---ceeEEccccEEEecCC------------------------------CCC--------- Confidence 1 1111 1111111110 1112233333333210 000 Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH--------HhhcccceecCCCCcceee Q lcl|Aclame:pro 247 NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID--------NIRYYKSIKVDGGGGVDKL 318 (479) Q Consensus 247 n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 318 (479) ....|.|.+..+...++..........+.+...+.|-.+++-......+.... ....++++.++++.+++.+ T Consensus 169 ~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l 248 (386) T protein:vir:49 169 GGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKGGGLLDFKTKVSRSRQAMKQMQGGPLVLDDLEDFTPL 248 (386) T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCCCCChHHHHHHHHHHHHhccCCCCceecCCCceEEEc Confidence 11247888888888777766665556666677777776665322222221110 1122345566666666666 Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 319 EINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG--DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS 396 (479) Q Consensus 319 ~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g--~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 396 (479) ..+.....+.+..+.....|+..-++|+.-.+..+ ..++..++..+ ...+...++.+...+... T Consensus 249 ~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~~~--------------~~~i~~~l~~i~~~~~~~ 314 (386) T protein:vir:49 249 EIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGDQQSSLEMIYNIY--------------FKSVSRYLRPFVSEMSKK 314 (386) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccchHHHHHHHH--------------HHHHHHHHHHHHHHHHHH Confidence 55555556777888888899888888876554322 23333333221 122222222222111111 Q ss_pred CCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhhhccCCC Q lcl|Aclame:pro 397 GNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNH---PWVEDVNDELERLKKQEDTQKEYDDLIPNN 471 (479) Q Consensus 397 ~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l---~~~~d~~~El~~i~~E~~~~~~~~~~~~~~ 471 (479) -. ..+++.....+-.|..+.+..+.++ +|++++-.+++++ |+..+ ++.... .......... T Consensus 315 l~-----~~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~~~~~~---~~~~~~------~~~~~~~~gG 380 (386) T protein:vir:49 315 LS-----CEVDVDISPAVDPTGSNYISLINSMVKSGTLAQNQGLYILQQAEILPK---ELPDGK------NPNRTSLKGG 380 (386) T ss_pred hc-----chhcccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHhhCCCCCC---cCcchh------ccCCCCCCCC Confidence 00 1223333444455666677777665 6789998888765 33222 111110 0000111111 Q ss_pred CCCCcC Q lcl|Aclame:pro 472 QDGVID 477 (479) Q Consensus 472 ~~~~~d 477 (479) ++..+| T Consensus 381 d~~~~~ 386 (386) T protein:vir:49 381 EINEQD 386 (386) T ss_pred CCCCCC Confidence 111111 No 189 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=97.58 E-value=4.3e-05 Score=44.55 Aligned_cols=388 Identities=8% Similarity=-0.030 Sum_probs=175.0 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccccccccccc--ccccccCc--ceeecchHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAK--VDDFTKVN--NKAINNYHKL 84 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~--~~~~~~~~--~ri~~n~~~~ 84 (479) |++-+....-. .+...+.+++.++.|................- .......+ .-+.++-... T Consensus 1 ~~~~~~~~~~~---------------~~~g~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~ 65 (424) T protein:vir:18 1 MEEPKYTIDLR---------------TNNGWWARLKSWFVGGRLVTPNQGSQTGPVSAHGYLGDSSINDERILQISTVWR 65 (424) T ss_pred CCCCccccccC---------------CCCchHHHHHhhccccccccccchhhccccccccccccccccHHHhhccHHHHH Confidence 00000000000 12233444555555543211111000000000 00000000 0012223344 Q ss_pred HHHHHHhhhhccCeee---cCCc--hh---HHHHHHHHHh--c---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EE Q lcl|Aclame:pro 85 LVDQKVGYSVGNPIVF---NADD--DN---LTKLLNDLLG--E---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KY 150 (479) Q Consensus 85 iv~~~a~~l~g~~~~~---~~~~--~~---~~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i 150 (479) .|+.+++-+.+-|+.+ ..+. .. ...+...+.. | .-..+...+....+.+|.+|+.+..+.+|++ .+ T Consensus 66 cv~~Ia~~iA~lp~~vy~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L 145 (424) T protein:vir:18 66 CVSLISTLTACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISL 145 (424) T ss_pred HHHHHHHhhccCceEEEEeccCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEE Confidence 6777777777777764 1111 11 1123333321 3 2334556778899999999999998888875 57 Q ss_pred EEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccc Q lcl|Aclame:pro 151 VIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRI 230 (479) Q Consensus 151 ~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (479) ..++|..+.+..+.. .+. |... .+|. ...|.++.+.+++.-. T Consensus 146 ~~l~~~~v~v~~~~~---~~~-----y~~~-~~g~----~~~~~~~eVihir~~~------------------------- 187 (424) T protein:vir:18 146 LPLQSANMDVKLVGK---KVV-----YRYQ-RDSE----YADFSQKEIFHLKGFG------------------------- 187 (424) T ss_pred EEecCcceEEEEcCC---eEE-----EEEE-eCCe----EEEeccccEEEecCcC------------------------- Confidence 888998887655432 111 1211 1221 1123344444332100 Q ss_pred ccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHH----h----- Q lcl|Aclame:pro 231 NNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDN----I----- 301 (479) Q Consensus 231 ~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~----~----- 301 (479) .+...|.|.+..+...+...........+.+...+.|-.++........++.... + T Consensus 188 ---------------~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~~ 252 (424) T protein:vir:18 188 ---------------FTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENFKEIAG 252 (424) T ss_pred ---------------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcCCCHHHHHHHHHHHHHHhC Confidence 0122466766666655555444444444555666666555543222111221111 1 Q ss_pred --hcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc--cccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 --RYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG--DKSGVALKFLYSLLDLKCSKTEKK 377 (479) Q Consensus 302 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g--~~Sg~Ai~~~~~~l~~k~~~~~~~ 377 (479) ..++++.++++.+.+.+........+.+..+..+..|+..-++|+.-.+... +.++..++...... T Consensus 253 ~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f---------- 322 (424) T protein:vir:18 253 GPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGF---------- 322 (424) T ss_pred CcccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHH---------- Confidence 1234556666556555554444556777777888888888888866554332 22233333222222 Q ss_pred HHHHHHHHHHHHHHHHHhcC--CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHH-HHHH Q lcl|Aclame:pro 378 FKKAIRELLWFVCEYLKISG--NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVN-DELE 452 (479) Q Consensus 378 ~~~~l~~~~~li~~~~~~~~--~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~-~El~ 452 (479) +...|.-.++.+...+...- ........+++.+...+..|..+.++.+.++ .|+++.-.++++++.-.-+. .++ T Consensus 323 ~~~tl~P~~~~ie~~ln~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~- 401 (424) T protein:vir:18 323 LQYTLQPYISRWENSIQRWLIPSKDVGRLHAEHNLDGLLRGDSASRAAFMKAMGESGLRTINEMRRTDNMPPLPGGDVA- 401 (424) T ss_pred HHHHHHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCee- Confidence 12223333332322222111 1111123456666777888999999998886 68999999988875422110 010 Q ss_pred HHHHHHHHHHhhhhccCCCCCCC Q lcl|Aclame:pro 453 RLKKQEDTQKEYDDLIPNNQDGV 475 (479) Q Consensus 453 ~i~~E~~~~~~~~~~~~~~~~~~ 475 (479) .+...-..-..........++|. T Consensus 402 ~~~~n~~~l~~~~~~~~~~~n~a 424 (424) T protein:vir:18 402 MRQAQYVPITDLGTNKEPRNNGA 424 (424) T ss_pred eeccCccchhhhhccCCccccCC Confidence 00000000000011111122222 No 190 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=97.55 E-value=4.6e-05 Score=44.36 Aligned_cols=377 Identities=8% Similarity=-0.065 Sum_probs=169.0 Q ss_pred HHHHHHHHHHHHHhhHH---HHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCe Q lcl|Aclame:pro 22 INLVKVIEHYILKHRPE---KYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPI 98 (479) Q Consensus 22 ~~~~~~i~~~~~~~~~~---~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~ 98 (479) ..+..+.... +.... -+..+...+.+... ..+... .+..-+..+-....|+.+++-+..-|+ T Consensus 1 m~~~~~~~~~--~~~~s~~~~w~~~~~~~~~~~~----------~~g~~v---t~~~al~~~~v~~~i~~Ia~~iA~lp~ 65 (421) T protein:vir:10 1 MFIPQMFEGK--KRSVSGGGFWEAMLGGVRSSHS----------KAGVMI---TPETALALSAVRACVTLLAESVAQLPV 65 (421) T ss_pred CCCcchhccc--ccccCcchhhHHHhhhhccCcc----------cCCcee---chHHhhccHHHHHHHHHHHHhhccCce Confidence 0000000000 00000 00111111111000 000000 000001223344567777777777777 Q ss_pred eec---CCch--h--HHHHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCC Q lcl|Aclame:pro 99 VFN---ADDD--N--LTKLLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSK 165 (479) Q Consensus 99 ~~~---~~~~--~--~~~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~ 165 (479) .+- .+.. . ...+...+. -| ....+...++...+.+|.+|+.+..+.+|.+ .+..++|..+.++.++. T Consensus 66 ~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~ 145 (421) T protein:vir:10 66 ELYRRDKNGGRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKKVIVLKGPD 145 (421) T ss_pred EEEEEcCCCceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEECCC Confidence 641 1111 1 112333332 13 2344556778899999999999999988876 47788888888765543 Q ss_pred CCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEe Q lcl|Aclame:pro 166 RQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPF 245 (479) Q Consensus 166 ~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~ 245 (479) . ..+|... ..+. .+..+.+.+++.. + T Consensus 146 g-------~~~y~~~-~~g~------~~~~~eiih~~~~------------------------------------~---- 171 (421) T protein:vir:10 146 G-------MPYYEIP-EIGE------TLPMRMMHHVKVF------------------------------------S---- 171 (421) T ss_pred c-------eEEEEEc-CCCc------EEchhhEEEecCc------------------------------------C---- Confidence 1 1222221 1111 1122222221100 0 Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCC---ccchhhHHH----Hh--------hcccceecC Q lcl|Aclame:pro 246 KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYP---GTSLQEFID----NI--------RYYKSIKVD 310 (479) Q Consensus 246 ~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~---~~~~~~~~~----~~--------~~~~~~~~~ 310 (479) .+...|.|-+..+...++..........+.+...+.|-.+++-.. +...++... .+ ..++++.++ T Consensus 172 ~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~n~~~~~vl~ 251 (421) T protein:vir:10 172 LDGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKSQEKIDQLLAKWTDRYSGINNMFSVALLQ 251 (421) T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccCCHHHHHHHHHHHHHHhcCccccCcceecC Confidence 012347777777777666655555455555666667766654221 111222111 11 123456666 Q ss_pred CCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 311 GGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVC 390 (479) Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 390 (479) ++.+.+.+..+.....+.+..+...+.|+..-++|+.-.+..+..+...++... ...+...|.-.++.+. T Consensus 252 ~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~----------~~f~~~tl~P~~~~ie 321 (421) T protein:vir:10 252 EGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQMLAKATNNNIEHQG----------LQFVMYTLLAWLKRHE 321 (421) T ss_pred CCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCcCCccccHHHHH----------HHHHHHHHHHHHHHHH Confidence 666666665555555667777778888888878886544433222211111111 1122223333333333 Q ss_pred HHHHhcCCCcc--ccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHH---HHHHHHHHHH Q lcl|Aclame:pro 391 EYLKISGNKSY--DYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDVNDEL---ERLKKQEDTQ 461 (479) Q Consensus 391 ~~~~~~~~~~~--~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~~~El---~~i~~E~~~~ 461 (479) ..+...-.... ....+++.....+..|..+.++.+.++ .|+++.-.++++++.- ++-+.=+ .....++. T Consensus 322 ~~ln~kL~~~~~~~~~~v~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~-- 399 (421) T protein:vir:10 322 GALQRDLLLPSERRDLYIEFNVSGLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLPPIAGGDKYLTPLNMVDSAQI-- 399 (421) T ss_pred HHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccccc-- Confidence 32222111111 112345555566677899999998886 6899999999887542 2111100 00001110 Q ss_pred HhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 462 KEYDDLIPNNQDGVIDET 479 (479) Q Consensus 462 ~~~~~~~~~~~~~~~det 479 (479) .+.+......++++.|+| T Consensus 400 ~~~~~~~~~~~~~e~d~~ 417 (421) T protein:vir:10 400 IPGDKKPTAQQMAEIDTI 417 (421) T ss_pred ccCCCCcccccCcccccc Confidence 011111122233333333 No 191 >protein:vir:105641 Length: 516 # NCBI annotation: putative head-tail connector # Family: family:all:481 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425006;genbank:gi:83571754;uniprot:Q2WC46;genbank:GeneID:3837282 Probab=97.54 E-value=4.8e-05 Score=44.25 Aligned_cols=428 Identities=11% Similarity=0.073 Sum_probs=187.6 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |-+-+.+..+. ....+.+..+. +..+|.......+++++-- +|+. + .+ ........++--+ T Consensus 1 ~~~~~~~~~~~--------~~~~l~~r~~~-L~~~R~~~e~~w~e~a~~~--lP~~--~--~~----~~~~~~~~~~~ds 61 (516) T protein:vir:10 1 MKQSTDLEYGG--------KRSKIPKLWEK-FSTKRSSFLDRAKHYSKLT--LPYL--M--ND----KGDNETSQNGWQG 61 (516) T ss_pred CCchhhHhhhh--------HHHHHHHHHHH-HHHhhhHHHHHHHHHHHhh--cccc--c--CC----CCCcccccccccc Confidence 54444333221 11223333332 2233433333444444421 1111 0 00 0011112234456 Q ss_pred hHHHHHHHHHhhhhcc--C-----eeecCCch-------------hHHHHH--------HHHHhcCHHHHHHHHHHHHHh Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGN--P-----IVFNADDD-------------NLTKLL--------NDLLGEEFDDTITELYLNASN 132 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~--~-----~~~~~~~~-------------~~~~~~--------~~~~~n~~~~~~~~~~~~~~~ 132 (479) .+...++.+|+-|.+- | +++...+. .+++.+ ..+..++|.....++.++... T Consensus 62 tg~~a~~~LAa~l~~~ltpp~~~WF~L~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~ 141 (516) T protein:vir:10 62 VGAQATNHLANKLAQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIV 141 (516) T ss_pred hHHHHHHHHHHHHHhhhcCCCCccccccCChhhHhhhhccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh Confidence 6667777777766543 1 23332221 122222 234457899999999999999 Q ss_pred CCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeec-----------------ccCceEEEEEEEeC Q lcl|Aclame:pro 133 KGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIED-----------------IDGNKIKRVEYYTE 195 (479) Q Consensus 133 ~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~-----------------~~~~~~~~~~~y~~ 195 (479) +|.+++ |.|+++.+ +.++-.+++ +-.+... ++...++..+..- ...+....+++|+. T Consensus 142 ~G~a~l--~~d~~~~~--~~~pl~~y~-v~~d~~G-~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~i~t~ 215 (516) T protein:vir:10 142 AGSCML--YKPSKGAI--SAIPMHHYV-VNRDTNG-DLLDIILLQEKSLRTFDPATRAVVEVGLKGKKCKEDDSIKLYTH 215 (516) T ss_pred HCeEeE--EecCCCCe--EEEEcCeEE-EeeCCCC-CeEEEeeeecccHHHHHHHhhhhhhhhhhhhccCCCCceEEEEE Confidence 999864 55666654 455545544 3333333 4444444433210 00111122333321 Q ss_pred CcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 196 NDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNIS 270 (479) Q Consensus 196 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s 270 (479) ++ ....+.+... ... ++........-+|..+|++.+. ++.+|+|-.++..+-+..+|.+.- T Consensus 216 --v~--~~~~~~~~~~---------~~~-d~~~~~~~s~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~ 281 (516) T protein:vir:10 216 --AK--YLGEGFWELK---------QSA-DDIPVGKVSKIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSE 281 (516) T ss_pred --EE--ecCCCceEEE---------Eee-CceeeccccccccccCCeeeeeeeecCCCCcccchHHHhhHHHHHHHHHHH Confidence 00 0000000000 000 1111112223345667777554 346899999999999999998888 Q ss_pred HHHHHHHHhccceeeeecCCccchhhHHHHhhcccceecCCCCcceeeecC--CCHHHHHHHHHHHHHHHHHHhCCCCCc Q lcl|Aclame:pro 271 TLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGGVDKLEIN--IPVEAKKELLDRLEKNIIIFGQGVNPE 348 (479) Q Consensus 271 ~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~ 348 (479) ...........|.+.+.-.+...... .... ..+.+.....++++.++.. .+....+..++.++..|...-....+. T Consensus 282 ~~l~~~~~a~~~~~lv~p~g~~~~~~-l~~~-~~g~~~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~ 359 (516) T protein:vir:10 282 AVARGAALMADIKYLIRPGAQTDVDH-FVNS-GTGEVVTGVEEDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMMETMT 359 (516) T ss_pred HHHHHHHHhcCCCcccCcccccchhh-hccC-CCceeecCCcccceeeecCcccchHHHHHHHHHHHHHHHHHHhhhhhh Confidence 88887888887766553211111111 1111 1123333444556665532 456667777777777775543322222 Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 349 SQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLW-F----VCEYLKISGNKSYDYKTVQITFNHSMIINEAEKID 423 (479) Q Consensus 349 ~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~-l----i~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~ 423 (479) .......||+.+.. +..++...++..+.++-. + |.+.+..... ..+..-+.+... .+.+.+..++ T Consensus 360 ~rd~~rvTAtEV~~-------r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~~~~p-~~P~~lv~~~~v--~~i~~L~raq 429 (516) T protein:vir:10 360 RRDAERVTAVEIQR-------DALEIEQNMGGVYSLFATTMQSPVAMWGLLEAGD-SFTSDLVDPVII--TGIEALGRMA 429 (516) T ss_pred ccCCccccHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCC-CCChhhcCccee--hhHHHHHHHH Confidence 22233468888765 455566666665554321 1 1111111111 111111222211 1222222222 Q ss_pred HHHH----------Hhcc-------CCh----HHHHHhCCCC---CCHHHHHHHHHHHHHH----HHhhhhccCCCCCCC Q lcl|Aclame:pro 424 MAAK----------STGI-------VSD----ETIVSNHPWV---EDVNDELERLKKQEDT----QKEYDDLIPNNQDGV 475 (479) Q Consensus 424 ~~~k----------~~g~-------is~----et~~~~l~~~---~d~~~El~~i~~E~~~----~~~~~~~~~~~~~~~ 475 (479) .+.. ++++ +.. +.+...++.- --.++|++.+.+++++ .....+-....+++. T Consensus 430 ~~~~i~~~~q~i~~~~q~~p~v~d~id~d~~~~~~a~~~gvp~~~irs~eev~~~r~~~~~~q~~~~~~~~~~~~~~~~~ 509 (516) T protein:vir:10 430 ELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMEQEQEAQMQAQQAQMLEEGVAKAVPGVI 509 (516) T ss_pred HHHHHHHHHHHHHHHhcCChHHHhhcCHHHHHHHHHHHhCCChhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh Confidence 1111 1111 111 1222333211 1235666666555432 122233334555556 Q ss_pred cCCC Q lcl|Aclame:pro 476 IDET 479 (479) Q Consensus 476 ~det 479 (479) +++- T Consensus 510 ~~~~ 513 (516) T protein:vir:10 510 QQEL 513 (516) T ss_pred hhhh Confidence 6665 No 192 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=97.54 E-value=4.9e-05 Score=44.23 Aligned_cols=384 Identities=9% Similarity=0.009 Sum_probs=173.5 Q ss_pred HHH---hhHHHHHHH-HHHhccCCcccccccccccccccccc-cc--cCcceeecchHHHHHHHHHhhhhccCeee---c Q lcl|Aclame:pro 32 ILK---HRPEKYKQG-EEYYYGNTDVNNKRRYYLLDGAKVDD-FT--KVNNKAINNYHKLLVDQKVGYSVGNPIVF---N 101 (479) Q Consensus 32 ~~~---~~~~~~~~~-~~yy~g~~~~~~~~~~~~~~~~~~~~-~~--~~~~ri~~n~~~~iv~~~a~~l~g~~~~~---~ 101 (479) +.+ .+..+.+.. .. |.|..-....+.+...-.+.... .. .+..-+..+-....|+.+++-+..-|+.+ . T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~g~~~s~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~ci~~Ia~~ia~lp~~~~~~~ 79 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFLK-WLGVPISLTDGSFWSAWGGMGSSSGETVTADSALQLSAVWSCVRLIAETIATLPLNLYQTK 79 (437) T ss_pred CCcchhhhhhhhHHhhhh-hcCCcccCCchhHHHhhcccccCCCceechHhhhccHHHHHHHHHHHHHHhhCceeEEEEc Confidence 221 112222221 22 22321111111000000000000 00 00011122334446777777766667654 1 Q ss_pred CCc--h--hHHHHHHHHHh--c---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceE Q lcl|Aclame:pro 102 ADD--D--NLTKLLNDLLG--E---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELV 171 (479) Q Consensus 102 ~~~--~--~~~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~ 171 (479) .+. . ....+...+.. | ....+...+...++.+|.+|+.+..+ .|.+ .+..++|..+.+..+... .+ T Consensus 80 ~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~-~g~~~~L~~l~p~~v~i~~~~~g--~~- 155 (437) T protein:vir:10 80 PDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRS-AGVLIGLELMLPQRTTVKRLTSG--AL- 155 (437) T ss_pred CCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCcceEEEECCCC--eE- Confidence 111 1 11122233321 2 24455667788899999999999888 4765 478899999887765432 11 Q ss_pred EEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCC Q lcl|Aclame:pro 172 AFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKC 251 (479) Q Consensus 172 ~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g 251 (479) +|.....+|. ...+..+.+.+++.-. .+...| T Consensus 156 ----~y~~~~~~g~----~~~~~~~dIih~r~~~----------------------------------------~d~~~G 187 (437) T protein:vir:10 156 ----QYTYRNVDGT----VSTLAEDDVFHVRGFS----------------------------------------LDGLMG 187 (437) T ss_pred ----EEEEEecCce----EEEEccccEEEecCcC----------------------------------------CCCccc Confidence 1222222222 1223344444332100 012357 Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---HHHHh--------hcccceecCCCCcceeeec Q lcl|Aclame:pro 252 VSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---FIDNI--------RYYKSIKVDGGGGVDKLEI 320 (479) Q Consensus 252 ~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~~ 320 (479) .|.+..+...+...........+.+...+.|-.++........+. ....+ ..++++.++++.+.+.+.. T Consensus 188 ~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~ 267 (437) T protein:vir:10 188 LTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQILQKEKRAEIRTDLAEQFGGAMQAGKTMVLEAGMKYQAITM 267 (437) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHHHHHHHHHHhcCccccCcceeccCCceEEeccC Confidence 787777777776665555556666666677766665432212111 11111 1234566666655555554 Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-- Q lcl|Aclame:pro 321 NIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD--KSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS-- 396 (479) Q Consensus 321 ~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~--~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-- 396 (479) +.....+.+..+.....|...-++|+.-.+.... ..+..++..... .+...|.-.+..|...+... T Consensus 268 ~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~----------f~~~tl~P~~~~ie~~l~~kll 337 (437) T protein:vir:10 268 NPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWGTGIEQQTLG----------FLTFTLRPWLTRIEQAARRSLL 337 (437) T ss_pred ChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHH----------HHHHHHHHHHHHHHHHHHhhcc Confidence 4445556777777888888888888755543322 222222221111 12222322222222222211 Q ss_pred CCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHH---------HHHHHHHHHHHHHHh Q lcl|Aclame:pro 397 GNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDVN---------DELERLKKQEDTQKE 463 (479) Q Consensus 397 ~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~~---------~El~~i~~E~~~~~~ 463 (479) .........+++.+...+..|..+.++++.++ +|+++.-.++++++.- +.-. .-++...++... .. T Consensus 338 ~~~e~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gg~~~~~~~~~~~~~~~~~~~~~~-~~ 416 (437) T protein:vir:10 338 RPGERDQFYAEFSVEGLLRADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMGGNAAVLTVQSALLPIDKLGEHTTA-TA 416 (437) T ss_pred CccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcceEeecCcccchhhccCcCCC-cc Confidence 11111123455666677788899999998876 5789999998887442 1111 112222111110 00 Q ss_pred hhhccCCCCCC----CcCCC Q lcl|Aclame:pro 464 YDDLIPNNQDG----VIDET 479 (479) Q Consensus 464 ~~~~~~~~~~~----~~det 479 (479) ..+...+.+.+ .+||- T Consensus 417 ~~~~~~~~~~~~~~~~~~~e 436 (437) T protein:vir:10 417 AQDALKAWLYQEEKTRATQE 436 (437) T ss_pred hhccccccCCCCCCCCcccc Confidence 11111111111 11111 No 193 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=97.51 E-value=5.3e-05 Score=44.03 Aligned_cols=380 Identities=11% Similarity=0.032 Sum_probs=171.9 Q ss_pred HHHHhhHHHHHHHHHHhccCCcccc------cccccccc--ccccccccc---CcceeecchHHHHHHHHHhhhhccCee Q lcl|Aclame:pro 31 YILKHRPEKYKQGEEYYYGNTDVNN------KRRYYLLD--GAKVDDFTK---VNNKAINNYHKLLVDQKVGYSVGNPIV 99 (479) Q Consensus 31 ~~~~~~~~~~~~~~~yy~g~~~~~~------~~~~~~~~--~~~~~~~~~---~~~ri~~n~~~~iv~~~a~~l~g~~~~ 99 (479) .....-...+.+++..+....+... .+...... ......... .+.-+..+-....|+.+++-+.+-|+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~ 80 (432) T protein:vir:10 1 MPDEKKLGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLT 80 (432) T ss_pred CCCCcccchhhhhHhhcCCccccccccccccccCcchhhhhcccccccCcccchhhhhcchHHHHHHHHHHHhhhhCcee Confidence 1111122344444555543221100 00000000 000000000 000112233444677777777777776 Q ss_pred ec---CCc--hhH-HHHHHHHHh--cC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCC Q lcl|Aclame:pro 100 FN---ADD--DNL-TKLLNDLLG--EE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQ 167 (479) Q Consensus 100 ~~---~~~--~~~-~~~~~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~ 167 (479) +- .+. +.. ..+...+.. |. ...+...+...++.+|.+|+.+..+ +|++ .+..++|..+.++.+... T Consensus 81 ~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~~~~v~v~~~~~g- 158 (432) T protein:vir:10 81 MYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKG- 158 (432) T ss_pred EEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEEcCCC- Confidence 41 111 111 123333321 32 3355667788899999999998776 4664 578899999988776542 Q ss_pred CceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecC Q lcl|Aclame:pro 168 RELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN 247 (479) Q Consensus 168 ~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n 247 (479) .+ .|.....+|.. ..+..+.+.+++.- + .+ T Consensus 159 -~~-----~y~~~~~~g~~----~~~~~~~iih~~~~------------------------------------~----~d 188 (432) T protein:vir:10 159 -NT-----AYRYRRTDGQM----IDIPKQQIWKIMGY------------------------------------S----LD 188 (432) T ss_pred -cE-----EEEEEecCceE----EEEcCccEEEecCC------------------------------------C----CC Confidence 21 12222223321 12233333332110 0 01 Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH--------HhhcccceecCCCCcceeee Q lcl|Aclame:pro 248 NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID--------NIRYYKSIKVDGGGGVDKLE 319 (479) Q Consensus 248 ~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 319 (479) ...|.|.+..+...++.......-..+.+...+.|-.++...... .++... ....++++.++++.+.+.+. T Consensus 189 g~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l-~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~ 267 (432) T protein:vir:10 189 GENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFL-TDDQYDSFAKKVSGSVEAGRAPLLEGGMDVKSLG 267 (432) T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCC-CHHHHHHHHHHHhhhhhCCCceecCCCceEEEcc Confidence 234777676666655554444434444455566676666533222 222111 12335566677766666666 Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc--cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 320 INIPVEAKKELLDRLEKNIIIFGQGVNPESQNT--GD-KSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS 396 (479) Q Consensus 320 ~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~--g~-~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 396 (479) .+.....+.+..+..+..|+..-++|+.-.+.. +. .++..++...... +...|.-.++.+...+... T Consensus 268 ~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e~~~~~f----------~~~tl~P~~~~ie~~ln~k 337 (432) T protein:vir:10 268 LNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGF----------LSMTLSPWLRRIEQSIALN 337 (432) T ss_pred CChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHHHHHHHH----------HHHHHHHHHHHHHHHHHhh Confidence 555555677777888888888888887655432 11 1233332221111 1222222222222222211 Q ss_pred --CCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHH------HHHHHHHHHHHhh Q lcl|Aclame:pro 397 --GNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDVNDEL------ERLKKQEDTQKEY 464 (479) Q Consensus 397 --~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~~~El------~~i~~E~~~~~~~ 464 (479) .........+++.....+..|..+.++.+.++ .|+++.-.++++++.- ++-..-+ .-+.. .. T Consensus 338 L~~~~~~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~glppi~g~~~~~~~~~~~~pl~~--~~---- 411 (432) T protein:vir:10 338 LLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDS--IG---- 411 (432) T ss_pred hcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceEeecCcccchhh--hc---- Confidence 11111112344444566677899999998886 5789999999887542 2111100 00110 00 Q ss_pred hhccCCCCCCCcCCC Q lcl|Aclame:pro 465 DDLIPNNQDGVIDET 479 (479) Q Consensus 465 ~~~~~~~~~~~~det 479 (479) .+..+....+.+++. T Consensus 412 ~~~~~~~~~~~~~~~ 426 (432) T protein:vir:10 412 LQASPEPASGLGNQQ 426 (432) T ss_pred ccCCCCCCCCCCCcc Confidence 000111111111111 No 194 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=97.50 E-value=5.5e-05 Score=43.94 Aligned_cols=261 Identities=12% Similarity=0.022 Sum_probs=121.1 Q ss_pred hhccCeeecCCchh-HHHHHHHHH-h-c---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCC Q lcl|Aclame:pro 93 SVGNPIVFNADDDN-LTKLLNDLL-G-E---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSK 165 (479) Q Consensus 93 l~g~~~~~~~~~~~-~~~~~~~~~-~-n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~ 165 (479) +..-|+.+-..++. ...+...+. . | ........++...+.+|.+|+.+..+.+|.+ .+..++|..+.+..++. T Consensus 1 ia~l~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~~~~v~v~~~~~ 80 (278) T protein:vir:78 1 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 80 (278) T ss_pred CccceeEEEecCcccccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEECCceeEEEEcCC Confidence 33334433222111 112222222 1 2 2445667788899999999999999988875 68889999998876654 Q ss_pred CCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEe Q lcl|Aclame:pro 166 RQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPF 245 (479) Q Consensus 166 ~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~ 245 (479) .. .. +|.....+|.. ..+..+.+.+++. .++. T Consensus 81 ~~--~~----~y~~~~~~g~~----~~~~~~evih~~~------------------------------~~~~-------- 112 (278) T protein:vir:78 81 SR--EL----YYSIHAATGNK----LIVHNMDMLHFKH------------------------------IVAS-------- 112 (278) T ss_pred Cc--eE----EEEEEcCCceE----EEEccccEEEECC------------------------------CCCC-------- Confidence 21 11 22222222221 1233333333311 0110 Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH----H----h-hcccceecCCCCcce Q lcl|Aclame:pro 246 KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID----N----I-RYYKSIKVDGGGGVD 316 (479) Q Consensus 246 ~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~----~----~-~~~~~~~~~~~~~~~ 316 (479) +...|.|.+..+...++........ +.......|-.++.... ...++... . . ..++++.++++.+++ T Consensus 113 -~~~~G~s~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~-~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~ 188 (278) T protein:vir:78 113 -NMVQGISPIDVLKNTTDFDNAVRTF--NLTEMQKPDSFMLKYGS-NVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIE 188 (278) T ss_pred -CCeeeccHHHHHHHHHHHHHHHHHH--HHHHhcCCCcEEEEeCC-CCCHHHHHHHHHHHHHHhccCCCceecCCCceEE Confidence 1224777777777766654443222 22223333433333221 11122111 1 1 234456666666666 Q ss_pred eeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 317 KLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS 396 (479) Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 396 (479) .+..+.....+.+..+...+.|+..-+.|+.-.+...+.+...++... ...+...|.-+++.+...+... T Consensus 189 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~~~~~----------~~~~~~~l~P~~~~i~~~ln~~ 258 (278) T protein:vir:78 189 PLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELN----------RFYLQHTLLPIVKQYEEEFNRK 258 (278) T ss_pred EccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHH----------HHHHHHHHHHHHHHHHHHHHhh Confidence 665555555677777888888888878876544433221111111111 1222223333333333333321 Q ss_pred CCCcccc-ceeeEEeCCCCC Q lcl|Aclame:pro 397 GNKSYDY-KTVQITFNHSMI 415 (479) Q Consensus 397 ~~~~~~~-~~i~i~f~~~~p 415 (479) --.+.+. ....+.|+-..- T Consensus 259 L~~~~e~~~g~~~~f~~~~l 278 (278) T protein:vir:78 259 LLTKTDREKIGILNLTLNLI 278 (278) T ss_pred cCChhHhcCCceEEEecccC Confidence 1111111 123455542222 No 195 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=97.46 E-value=6.4e-05 Score=43.59 Aligned_cols=380 Identities=8% Similarity=-0.031 Sum_probs=177.8 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccc------ccccccccccccccccCcceeecc Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNK------RRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~------~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |+.-.+..++ +-+...+.+++..+.|....... +.......... ......-+.++ T Consensus 1 ~~~~~~~~~~-----------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~al~~~ 61 (424) T protein:vir:18 1 MEEPKYTIDL-----------------RTNNGWWARLQSWFVGGRLVTPNQGSQTGPVSAHGHLGDS--SINDERILQIS 61 (424) T ss_pred CCCCcceEee-----------------cCCCchHHHHHhhhcccccccccccccccccccccccccc--cccHHHhhccH Confidence 0000000000 11223445555555544321111 11100000000 00000001122 Q ss_pred hHHHHHHHHHhhhhccCeeec---CCc--hh---HHHHHHHHHh--c---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCc Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGNPIVFN---ADD--DN---LTKLLNDLLG--E---EFDDTITELYLNASNKGVEWLHPYINRKGE 147 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~~~~~~---~~~--~~---~~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~ 147 (479) -.-..|+.+++-+.+-|+.+- .+. .. ...+...+.. | ....+...+....+.+|.+|+.+..+.+|. T Consensus 62 ~v~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~ 141 (424) T protein:vir:18 62 TVWRCVSLISTLTACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGD 141 (424) T ss_pred HHHHHHHHHHHhhccCceEEEEeecCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCc Confidence 233457777777777777641 111 11 1123333331 3 234455667889999999999999998887 Q ss_pred e-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccc Q lcl|Aclame:pro 148 F-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEG 226 (479) Q Consensus 148 ~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (479) + .+..++|..+.+..+.. .+. |... .+|. ...|.++.+.+++.-. T Consensus 142 ~~~L~pl~~~~V~v~~~~~---~~~-----y~~~-~~g~----~~~~~~~eIih~r~~~--------------------- 187 (424) T protein:vir:18 142 VISLLPLQSANMDVKLVGK---KVV-----YRYQ-RDSE----YADFSQKEIFHLKGFG--------------------- 187 (424) T ss_pred EEEEEEecCcceEEEEcCC---eEE-----EEEE-eCCe----EEEeccccEEEecCcC--------------------- Confidence 6 57888999888755432 111 1211 1221 1123444444432100 Q ss_pred ccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH----Hh- Q lcl|Aclame:pro 227 HFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID----NI- 301 (479) Q Consensus 227 ~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~----~~- 301 (479) .+...|.|.++.+...++..........+.+...+.|-.++........++... .+ T Consensus 188 -------------------~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~ 248 (424) T protein:vir:18 188 -------------------FTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENFK 248 (424) T ss_pred -------------------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCcCCCHHHHHHHHHHHH Confidence 012347777776666666555544445555666677766654322211122111 11 Q ss_pred ------hcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc--cccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 ------RYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG--DKSGVALKFLYSLLDLKCSK 373 (479) Q Consensus 302 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g--~~Sg~Ai~~~~~~l~~k~~~ 373 (479) ..++++.++++.+++.+........+.+..+...+.|...-++|+.-.+... +..+..++...... T Consensus 249 ~~~~g~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f------ 322 (424) T protein:vir:18 249 EIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGF------ 322 (424) T ss_pred HHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHH------ Confidence 1234566666666666655555556777777888888888888866554332 22233333222221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CH Q lcl|Aclame:pro 374 TEKKFKKAIRELLWFVCEYLKISGN--KSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DV 447 (479) Q Consensus 374 ~~~~~~~~l~~~~~li~~~~~~~~~--~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~ 447 (479) +...|.-.++.+...+...-- .......+++.+...+..|..+.++.+.++ .|+++.-.++++++.-. +- T Consensus 323 ----~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gG 398 (424) T protein:vir:18 323 ----LQYTLQPYISRWENSIQRWLIPAKDVGRIHAEHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTDNLPPLPGG 398 (424) T ss_pred ----HHHHHHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc Confidence 222333333333332222111 111123355666777788999999999887 67999988888875422 11 Q ss_pred HHH-----HHHHHHHHHHHHhhhhccCCCCCCC Q lcl|Aclame:pro 448 NDE-----LERLKKQEDTQKEYDDLIPNNQDGV 475 (479) Q Consensus 448 ~~E-----l~~i~~E~~~~~~~~~~~~~~~~~~ 475 (479) +.- +..+.. ........++|. T Consensus 399 D~~~~~~n~~~l~~-------~~~~~~p~~~ga 424 (424) T protein:vir:18 399 DVAMRQSQYVPITD-------LGTNKEPRNNGA 424 (424) T ss_pred CeeeeccCccchHh-------hhccCCCccCCC Confidence 100 001100 001111122222 No 196 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=97.42 E-value=7.2e-05 Score=43.30 Aligned_cols=391 Identities=12% Similarity=0.049 Sum_probs=182.2 Q ss_pred CC-CcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccccccccc----ccccccccCcc Q lcl|Aclame:pro 1 ML-NIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDG----AKVDDFTKVNN 75 (479) Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~----~~~~~~~~~~~ 75 (479) |. -+|..+.+-+.....+ ..+...|.. +.+.. +.+.+..-.+.+ ...+... ...... T Consensus 1 ~~~~i~~~~g~~~~~~~~~---~~~~~~ia~--------~~~~~-~~~~~~~~~p~~-~~il~~~~~~~~~y~~m----- 62 (491) T protein:vir:79 1 MSKGLWVSPTEFVKFGEPD---KSLSSQIAT--------RARSI-DFFALGMYLPNP-DPVLKALGKDIRVYREL----- 62 (491) T ss_pred CCCeeeCCCCCcccccccc---hhHHHHHhh--------hcccc-ccccccccCcch-hHHHhhccCCHHHHHHH----- Confidence 43 2445555555442211 111111110 00000 111111100100 0000000 000010 Q ss_pred eeecchHHHHHHHHHhhhhccCeeecCC--chhHHHHHHHHH-hcCHHHHHHHHHHHHHhCCeEE-EEEEeCCCCce--- Q lcl|Aclame:pro 76 KAINNYHKLLVDQKVGYSVGNPIVFNAD--DDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEW-LHPYINRKGEF--- 148 (479) Q Consensus 76 ri~~n~~~~iv~~~a~~l~g~~~~~~~~--~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~-~~v~~d~~~~~--- 148 (479) .......-.+.+...-+.+.+.++.+. ++...+.+..+. +-+|...+..+ .++..||.++ +.+|...+|.. T Consensus 63 -~~D~~i~s~l~~Rk~av~~~~w~i~~~~~~~~~a~~i~e~l~~~~~~~~i~~~-lda~~~G~s~~Ei~w~~~~g~~~~~ 140 (491) T protein:vir:79 63 -RADAHVGGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIATEM-LDAVLYGYQPMEITWGKVGNYIVPI 140 (491) T ss_pred -hhChHHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHH-HHhhhhcceeEEEEEeecCCeeeEE Confidence 123556667788888888899888643 334445665554 34677777766 4688899864 55565444544 Q ss_pred EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccc Q lcl|Aclame:pro 149 KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHF 228 (479) Q Consensus 149 ~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (479) ++.+.+|+.+. |+... .+. + ........ -..+ T Consensus 141 ~l~~r~~~~f~--~d~~~--~l~----l-~~~~~~~~---g~~l------------------------------------ 172 (491) T protein:vir:79 141 DVVGKPADWFV--YDPEN--QLR----F-RSKEHWVQ---GEEL------------------------------------ 172 (491) T ss_pred eeeeeccccee--eccCC--ceE----E-eecCCCCC---ceee------------------------------------ Confidence 35555554433 33321 111 0 00000000 0000 Q ss_pred ccccccccccccceEEe--cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh------HHHH Q lcl|Aclame:pro 229 RINNKEQGWGKVPFIPF--KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE------FIDN 300 (479) Q Consensus 229 ~~~~~~~~~g~vPvv~~--~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~------~~~~ 300 (479) .+++.+-+.+. ..+..|.|.+..+....--=+..+.+++.-++.++.|+++.+-..+...++ .... T Consensus 173 ------p~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igky~~~a~~~ek~~l~~al~~ 246 (491) T protein:vir:79 173 ------PARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRSASDAETNLLLDRLED 246 (491) T ss_pred ------cCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCCCCCHHHHHHHHHHHHH Confidence 11222211111 124568888888776666666678889999999999999887533322222 2344 Q ss_pred hhcccceecCCCCcceeeecC---CCHHHHHHHHHHHHHHHHHHhCCCCCcccccc-cccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 301 IRYYKSIKVDGGGGVDKLEIN---IPVEAKKELLDRLEKNIIIFGQGVNPESQNTG-DKSGVALKFLYSLLDLKCSKTEK 376 (479) Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g-~~Sg~Ai~~~~~~l~~k~~~~~~ 376 (479) +....+..++.+.++++++.. .+...++..++...+.|...--+-.++.+..| .+.|.. ...-....+..-.+ T Consensus 247 ~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt~~~gs~a~~~v---h~~v~~~i~~~D~~ 323 (491) T protein:vir:79 247 MVQDAVAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIALLGQNQTTEATSTRASAQA---GLEVTDDIRDGDKA 323 (491) T ss_pred HhcCeEEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHHhhhhhccCcccchhhHHH---HHHHHHHHHHHHHH Confidence 566667788999999999764 23456888888888877654432223333222 222221 11222333444455 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCH-HHHHHHHHHHh--cc-CChHHHHHhCCCCCCHHHHHH Q lcl|Aclame:pro 377 KFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINE-AEKIDMAAKST--GI-VSDETIVSNHPWVEDVNDELE 452 (479) Q Consensus 377 ~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~-~e~a~~~~k~~--g~-is~et~~~~l~~~~d~~~El~ 452 (479) .+...+.++++-++.+ .+. +. ....+.|.. +.+. ...++.+.+++ |+ ++.+.+.+.++. ..++.+-+ T Consensus 324 ~i~~tln~li~~l~~~---N~~-~~--~~p~f~~~e--~ee~~~~~a~~~~~L~~~G~~i~~~~~~e~~Gi-p~~~~~e~ 394 (491) T protein:vir:79 324 IVVEAMNMLIRWICDL---NFD-GA--ARPVFDMWE--QEQVDEIQAGRDEKLTRAGARFTPAYFKRAYNL-QDGDLDER 394 (491) T ss_pred HHHHHHHHHHHHHHHh---cCC-CC--CcceEeecC--cCchhHHHHHHHHHHHhCCCccCHHHHHHHhCC-CCCCCCcc Confidence 6666666655554443 222 11 223444443 3343 44677777764 66 888888888864 22211100 Q ss_pred HHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 453 RLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 453 ~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) -.. ....... ....+......++++ T Consensus 395 ~~~-~~~~~~~-~~~~~~~~~~~~~~~ 419 (491) T protein:vir:79 395 PLP-VSAVDAV-GAASFAEFEAPDQDA 419 (491) T ss_pred ccC-cCccccc-ccccccccCCCCCcc Confidence 000 0000000 000000111111111 No 197 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=97.40 E-value=7.5e-05 Score=43.21 Aligned_cols=384 Identities=10% Similarity=0.020 Sum_probs=168.5 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccc------ccccccc-cc-ccccc-c Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNK------RRYYLLD-GA-KVDDF-T 71 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~------~~~~~~~-~~-~~~~~-~ 71 (479) |.+. .......+....+......... +...... .+ ..... . T Consensus 1 ~~~~------------------------------~~mg~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 50 (432) T protein:vir:81 1 MPDE------------------------------KKLGLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGA 50 (432) T ss_pred CCch------------------------------hhcchhhhhhhhcccccccccccccccccCccchhhhcccccccCc Confidence 1111 1112223333333221110000 0000000 00 00000 0 Q ss_pred --cCcceeecchHHHHHHHHHhhhhccCeee---cCCc--h-hHHHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEE Q lcl|Aclame:pro 72 --KVNNKAINNYHKLLVDQKVGYSVGNPIVF---NADD--D-NLTKLLNDLL--GEE---FDDTITELYLNASNKGVEWL 138 (479) Q Consensus 72 --~~~~ri~~n~~~~iv~~~a~~l~g~~~~~---~~~~--~-~~~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~ 138 (479) ....-+..+-....|+.+++-+..-|+.+ ..+. + ....+...+. -|. -..+...+...++.+|.+|+ T Consensus 51 ~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv 130 (432) T protein:vir:81 51 AVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYV 130 (432) T ss_pred ccchHhhhccHHHHHHHHHHHHhhhhCceeeEEecCCcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEE Confidence 00000112223345667777666667764 1111 1 1112233332 132 23455677888999999999 Q ss_pred EEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccc Q lcl|Aclame:pro 139 HPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEY 217 (479) Q Consensus 139 ~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~ 217 (479) .+..+ +|++ .+..++|..+.+..++.. ++. |.....+|.. ..+..+.+.+++.- T Consensus 131 ~i~~~-~g~~~~L~~l~~~~v~v~~~~~g--~~~-----y~~~~~~g~~----~~~~~~~iih~r~~------------- 185 (432) T protein:vir:81 131 RKVVT-DGRIESLQYLANDRLTITTDPKG--NTA-----YRYRRTDGQM----IDIPKQQIWKIMGY------------- 185 (432) T ss_pred EEEec-CCcEEEEEEEcCCceEEEECCCC--cEE-----EEEEecCceE----EEEccccEEEecCC------------- Confidence 88776 4665 577899999988776532 211 2222223321 11223333332110 Q ss_pred cccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH Q lcl|Aclame:pro 218 GKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF 297 (479) Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~ 297 (479) | .+...|.|-+..+...++..........+.+...+.|-.++.-.. ...++. T Consensus 186 -----------------------~----~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~-~l~~e~ 237 (432) T protein:vir:81 186 -----------------------S----LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDR-FLTDDQ 237 (432) T ss_pred -----------------------C----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCC-CCCHHH Confidence 0 012347777776666666555444444444555556655544322 122221 Q ss_pred HH--------HhhcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc--cc-ccHHHHHHHHHH Q lcl|Aclame:pro 298 ID--------NIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT--GD-KSGVALKFLYSL 366 (479) Q Consensus 298 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~--g~-~Sg~Ai~~~~~~ 366 (479) .. ....++++.++++.+.+.+..+.....+.+..+.....|...-++|+.-.+.. +. .++..++-.... T Consensus 238 ~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq~~~~ 317 (432) T protein:vir:81 238 YDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLG 317 (432) T ss_pred HHHHHHHHhhhhcCCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHHHHHH Confidence 11 12335567777776666666555555677777888888888878887554432 11 223333222111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCC Q lcl|Aclame:pro 367 LDLKCSKTEKKFKKAIRELLWFVCEYLKISGN--KSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHP 442 (479) Q Consensus 367 l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~--~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~ 442 (479) . +...|.-.++.+...+...-. .......+++.+...+..|..+.++++.++ +|+++.-.++++++ T Consensus 318 f----------~~~tl~P~~~~ie~~l~~kLl~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t~NE~R~~~g 387 (432) T protein:vir:81 318 F----------LTMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEG 387 (432) T ss_pred H----------HHHHHHHHHHHHHHHHHhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhC Confidence 1 122233333322222221111 111122344445566778999999998876 57999999998875 Q ss_pred CCCCH-HHHHHHHH-----HHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 443 WVEDV-NDELERLK-----KQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 443 ~~~d~-~~El~~i~-----~E~~~~~~~~~~~~~~~~~~~det 479 (479) .-.-+ ...+-.+. -+...... ...+....+.+++. T Consensus 388 lpp~~g~~~~~~~~~~~~pl~~~~~~~--~~~~~~~~~n~~~~ 428 (432) T protein:vir:81 388 LPKLGGNAAVLTVQSAMVPLDSIGLQA--SPEPASGLGNQQQD 428 (432) T ss_pred CCCCCCCcceEeecCcccchhhhccCC--CCCCCCCCCCcccc Confidence 42200 01110000 00000000 00111111111111 No 198 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=97.36 E-value=8.4e-05 Score=42.92 Aligned_cols=396 Identities=11% Similarity=-0.027 Sum_probs=170.4 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCc--ceeecchHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN--NKAINNYHKLLV 86 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~--~ri~~n~~~~iv 86 (479) |..+..-+.+.... .. .-.+++...+.-+..... ..........+ .-+.+.=....| T Consensus 1 Mg~~~~l~~r~~~~-------------~~-------~~~~~~~~~~~~~~~~~~-~~~~~~g~~V~~~~al~~~~V~~~v 59 (457) T protein:vir:13 1 MGFWSALFGRGHSP-------------AL-------DGIEARAWEPYDPSIYNL-GAVAASGETVTPHDALQVSAVFASV 59 (457) T ss_pred Cchhhhhhcccccc-------------cc-------cccccccccccchHHHhh-cccccCCceechHHhhccHHHHHHH Confidence 11111111100000 00 000000000000000000 00000000000 001111223456 Q ss_pred HHHHhhhhccCeeecC---Cc--hhHHHHHHHHHh---cC--HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEcc Q lcl|Aclame:pro 87 DQKVGYSVGNPIVFNA---DD--DNLTKLLNDLLG---EE--FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPA 155 (479) Q Consensus 87 ~~~a~~l~g~~~~~~~---~~--~~~~~~~~~~~~---n~--~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p 155 (479) +.+++-+.+-|+++-- +. +.....+..+.. |. ...+...++...+.+|.+|+.+..+ .|++ .+..++| T Consensus 60 ~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~-~g~~~~l~~l~p 138 (457) T protein:vir:13 60 RLLSETIATLPLSTYSKRGGSRKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQ-GPNIVGLDVLDP 138 (457) T ss_pred HHHHHhhccCceEEEEecCCcccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcc Confidence 7777777777776421 11 111112222221 22 2356677788889999999988665 4654 5788999 Q ss_pred ceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccc Q lcl|Aclame:pro 156 EEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQ 235 (479) Q Consensus 156 ~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (479) ..+.+..+......... .+.|.. ..++. ......|.++.+.++..- + T Consensus 139 ~~v~v~~~~~~~~~~~~-~~~y~~-~~~~~-~~~~~~~~~~diih~~~~------------------------------~ 185 (457) T protein:vir:13 139 TKIHVHMVMVDGLRRKV-FEAYDI-DADGN-EVLLGWFTPRDVLHIPGM------------------------------M 185 (457) T ss_pred CceEEEEecCCCcccee-EEEEEE-ecCCc-eeeEEeeCccceEEecCC------------------------------C Confidence 98887655432211111 111221 11222 122333455555543211 0 Q ss_pred cccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHH----h--------hc Q lcl|Aclame:pro 236 GWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDN----I--------RY 303 (479) Q Consensus 236 ~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~----~--------~~ 303 (479) . .+...|.|.+..+...+........-..+.+...+.|-.+++.... ..++.... + .. T Consensus 186 ~---------~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~-ls~e~~~~~~~~~~~~~~g~~na 255 (457) T protein:vir:13 186 L---------PGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPGT-MSEEGLARAREAWRAANSGVDNA 255 (457) T ss_pred C---------CCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCC-CCHHHHHHHHHHHHHHhcCcccc Confidence 0 0113577888777777776666655556666667777666653222 22221111 1 12 Q ss_pred ccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc--cccHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 YKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG--DKSGVALKFLYSLLDLKCSKTEKKFKKA 381 (479) Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g--~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~ 381 (479) ++++.++++.+.+.+..+.....+.+..+.....|...-++|+.-.+... +.++..++-.... .+... T Consensus 256 g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~----------f~~~t 325 (457) T protein:vir:13 256 HRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIA----------FTMFS 325 (457) T ss_pred CcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHH----------HHHHH Confidence 44566776666666665544555667777788888888788875544332 2222322221111 11222 Q ss_pred HHHHHHHHHHHHHhcC--CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCH--HHH--- Q lcl|Aclame:pro 382 IRELLWFVCEYLKISG--NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDV--NDE--- 450 (479) Q Consensus 382 l~~~~~li~~~~~~~~--~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~--~~E--- 450 (479) |.-.++.|...+...- ........+++.+...+..|..+.++++.++ +|+++.-.++++++.- ++. +.- T Consensus 326 l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~Pi~~g~~d~~~~~ 405 (457) T protein:vir:13 326 LRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVP 405 (457) T ss_pred HHHHHHHHHHHHHHhhcCccccCceeEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccceeec Confidence 2222222222222111 1111223456666777788999999998886 6899998888876442 221 110 Q ss_pred --HHHHHHH---HHHHHhhhhc------c--CCCCCCCcCCC Q lcl|Aclame:pro 451 --LERLKKQ---EDTQKEYDDL------I--PNNQDGVIDET 479 (479) Q Consensus 451 --l~~i~~E---~~~~~~~~~~------~--~~~~~~~~det 479 (479) +..+.+. +.+....... . +...+...|++ T Consensus 406 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~~ 447 (457) T protein:vir:13 406 LNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDEG 447 (457) T ss_pred cccccccccccccccCCCCCCCCCccccCCCCCCCCCCcccc Confidence 1111110 0000000000 0 00000011111 No 199 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=97.36 E-value=8.5e-05 Score=42.91 Aligned_cols=395 Identities=12% Similarity=0.022 Sum_probs=170.6 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHH-HHHHhccCCcccccccccccccccccccccCc--ceeecchHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQ-GEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN--NKAINNYHKLL 85 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~--~ri~~n~~~~i 85 (479) |..+..-+.+.... .... -...|. +..+..... ..........+ .-+.++-.... T Consensus 1 Mg~~~~l~~~~~~~----------------~~~~~~~~~~~-----~~~~~~~~~-~~~~~~g~~v~~~~al~~~~v~~~ 58 (457) T protein:vir:62 1 MGFWSALFGRGHSP----------------ALDAAEGRAWE-----PYDPSIYNL-GATASSGERVTPHDALQVSAVFAS 58 (457) T ss_pred Cchhhhhhcccccc----------------ccccccccccc-----cchhhhhhc-cccccCCceechHHhhccHHHHHH Confidence 11111110000000 0000 000000 000000000 00000000000 00111222334 Q ss_pred HHHHHhhhhccCeeecCCc----hhH-HHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEc Q lcl|Aclame:pro 86 VDQKVGYSVGNPIVFNADD----DNL-TKLLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIP 154 (479) Q Consensus 86 v~~~a~~l~g~~~~~~~~~----~~~-~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~ 154 (479) |+.+++-+.+-|+++--.. ... ...+..+. .|+ ...+...++...+.+|.+|+.+..+ .|++ .+..++ T Consensus 59 i~~ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~-~g~~~~l~~l~ 137 (457) T protein:vir:62 59 VRLLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLD 137 (457) T ss_pred HHHHHHhHhhCceEEEEecCCccccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEc Confidence 6666666666677642111 111 11222222 122 4456677888899999999998655 4555 578888 Q ss_pred cceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 155 AEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKE 234 (479) Q Consensus 155 p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (479) |..+.+.-+...... ....+.|.. ..++. ......|.++.+.+++.. T Consensus 138 p~~v~v~~~~~~~~~-~~~~~~y~~-~~~g~-~~~~~~~~~~eiih~r~~------------------------------ 184 (457) T protein:vir:62 138 PTKIHVHMVMVDGLR-RKVFEAYDI-DADGN-EVLLGWFTPRDVLHIPGM------------------------------ 184 (457) T ss_pred CcceEEEEeccCCcc-ceeEEEEEE-ccCCc-eeEEEeeCccceEEecCC------------------------------ Confidence 988876544332111 111112222 12222 222334455555554211 Q ss_pred ccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHH----h--------h Q lcl|Aclame:pro 235 QGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDN----I--------R 302 (479) Q Consensus 235 ~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~----~--------~ 302 (479) +.. ....|.|.++.+...+.....+.....+.+...+.|-.++.-.. ...++.... + . T Consensus 185 ~~~---------~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~ls~e~~~~~~~~~~~~~~G~~n 254 (457) T protein:vir:62 185 MLP---------GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG-TMSEEGLARAREAWRAANSGVDN 254 (457) T ss_pred CCC---------CceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCC-CCCHHHHHHHHHHHHHHhcCccc Confidence 000 11347787877777777666666566666666677766655322 222222111 1 1 Q ss_pred cccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc--cccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 303 YYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG--DKSGVALKFLYSLLDLKCSKTEKKFKK 380 (479) Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g--~~Sg~Ai~~~~~~l~~k~~~~~~~~~~ 380 (479) .++++.++++.+++.+..+.....+.+..+..+..|...-++|+.-.+... +.++..++...... +.. T Consensus 255 ag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~f----------~~~ 324 (457) T protein:vir:62 255 AHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAF----------TMF 324 (457) T ss_pred cCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHHH----------HHH Confidence 234566776666666665545556777777888888888888875544332 22233232221111 111 Q ss_pred HHHHHHHHHHHHHHhcC--CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCH--HHH-- Q lcl|Aclame:pro 381 AIRELLWFVCEYLKISG--NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDV--NDE-- 450 (479) Q Consensus 381 ~l~~~~~li~~~~~~~~--~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~--~~E-- 450 (479) .|.-+++.+...+...- ........+++.+...+..|..+.++++.++ .|+++.-.++++++. +++. +.- T Consensus 325 ~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~D~~~~ 404 (457) T protein:vir:62 325 SLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRV 404 (457) T ss_pred HHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceeee Confidence 22222222222222111 0111223455556677777999999998886 679999999988754 2222 111 Q ss_pred ---HHHHHHH---HHHHH----------hhhhccCCCCCCCcCCC Q lcl|Aclame:pro 451 ---LERLKKQ---EDTQK----------EYDDLIPNNQDGVIDET 479 (479) Q Consensus 451 ---l~~i~~E---~~~~~----------~~~~~~~~~~~~~~det 479 (479) +..+... +.+.. ...+..+++.++..||. T Consensus 405 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 449 (457) T protein:vir:62 405 PLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEG 449 (457) T ss_pred ccccccccccccccccCCCccCCCCccCCCCCCCCCCCCCCCccc Confidence 1111110 00000 00111111112222222 No 200 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=97.36 E-value=8.6e-05 Score=42.87 Aligned_cols=365 Identities=12% Similarity=0.036 Sum_probs=160.8 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQ 88 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~ 88 (479) |..+.. +.....+............+-+-. ..+... ....-+..+-....|+. T Consensus 1 Mg~f~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v---~~~~~l~~~~v~~~i~~ 53 (382) T protein:vir:48 1 MPIFNL-------------ATESPPDNQGGFFDVVDSDFLASL-----------KGNEWV---SAETALRNSDLFSIINQ 53 (382) T ss_pred Cccccc-------------cccCCcccccccccchhhhccccc-----------cCCccc---chHhhhccHHHHHHHHH Confidence 111111 000000000000000000000000 000000 00000112334456777 Q ss_pred HHhhhhccCeeecCCchhHHHHHHHHHh-cCHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCC Q lcl|Aclame:pro 89 KVGYSVGNPIVFNADDDNLTKLLNDLLG-EEFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKR 166 (479) Q Consensus 89 ~a~~l~g~~~~~~~~~~~~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~ 166 (479) +|+-+.+-|+++..... ..++..=.. .....+...+...++.+|.+|+.+..|.+|++ .+..++|..+.++.++.. T Consensus 54 ia~~ia~~~~~~~~~~~--~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~~~~~ 131 (382) T protein:vir:48 54 LSNDLATVKLITSRKKL--QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNK 131 (382) T ss_pred HHHhhccCceeeecchh--hhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCC Confidence 77777777877543221 122211111 12355667788899999999999999988876 788899999988765432 Q ss_pred CCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEec Q lcl|Aclame:pro 167 QRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK 246 (479) Q Consensus 167 ~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~ 246 (479) . .+ +|.+...+ ........+.++.+.+++.. ++ . T Consensus 132 ~-~~-----~y~~~~~~-~~~~~~~~~~~~evih~~~~------------------------------~~---------~ 165 (382) T protein:vir:48 132 D-GI-----YYNITFDD-PRIPPKQHVPQNDVLHFRLL------------------------------SV---------D 165 (382) T ss_pred C-eE-----EEEEEecC-ccccceeEEcCccEEEecCC------------------------------CC---------C Confidence 1 11 12221111 11111122333333333210 00 0 Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH---H-----hhcccceecCCCCcceee Q lcl|Aclame:pro 247 NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID---N-----IRYYKSIKVDGGGGVDKL 318 (479) Q Consensus 247 n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~ 318 (479) ....|.|.+..+...++.......-..+.+...+.|-.+++-......+.... . ...++++.++++.+++.+ T Consensus 166 ~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l 245 (382) T protein:vir:48 166 GGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKGGGLLDFKTKLSRSRQAMKQMQGGPLVLDDLEDFTPL 245 (382) T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHHHHHHHhhccCCCCeeEcCCCceEEEc Confidence 11357787888888777776666666666777777876665322222222111 0 112455666666666666 Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 319 EINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKS--GVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS 396 (479) Q Consensus 319 ~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~S--g~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 396 (479) ........+.+..+..++.|+..-++|+.-.+..++.+ ..+. ...+...|.-+++.+...+... T Consensus 246 ~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~~~~~--------------~~~~~~~l~p~~~~i~~~l~~~ 311 (382) T protein:vir:48 246 EIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQGDQQSSLEMS--------------SDLYSKAVSRYLRPFLSELSQK 311 (382) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH Confidence 55555556677788888888888788865554333211 1111 1122222332333222222211 Q ss_pred CCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhhhccCCC Q lcl|Aclame:pro 397 GNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNH---PWVEDVNDELERLKKQEDTQKEYDDLIPNN 471 (479) Q Consensus 397 ~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l---~~~~d~~~El~~i~~E~~~~~~~~~~~~~~ 471 (479) -..+.. .+....+ -.+.......+.++ +|++++-.+++.+ |+..++ +.+. + .......+. T Consensus 312 l~~~~~-~~~~~~~----~~~~~~~~~~~~~l~~~g~~t~~e~r~~l~~~g~~~~~---~~~~--~-----~~~~~~~GG 376 (382) T protein:vir:48 312 LSCDVD-ADIFPAV----DPTGSNYISRINSLVKTGTLAQNQGLYILQQAEILPKE---LPNG--E-----NPNSTLKGG 376 (382) T ss_pred hcChhh-hhhhhhh----ccchhHHHHHHHHHhhcCccCHHHHHHHHhhCCCCCcc---hhhh--h-----cCCCCCCCC Confidence 111110 0111111 11222333444443 5789988887765 444432 1111 0 000111112 Q ss_pred CCCCcC Q lcl|Aclame:pro 472 QDGVID 477 (479) Q Consensus 472 ~~~~~d 477 (479) ++..+| T Consensus 377 d~~~~~ 382 (382) T protein:vir:48 377 EEDGQD 382 (382) T ss_pred CCCCCC Confidence 211111 No 201 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=97.35 E-value=8.7e-05 Score=42.85 Aligned_cols=382 Identities=10% Similarity=-0.032 Sum_probs=169.0 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHH-----------HHHHHHHHhccCCcccccccccccccccccc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPE-----------KYKQGEEYYYGNTDVNNKRRYYLLDGAKVDD 69 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~ 69 (479) |+..- .+++.......+.. --......+-|.... .+.... T Consensus 1 ~~~~l-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------~g~~v~ 51 (434) T protein:vir:43 1 MSKSL-------------------GKVLSSATSAPRSSLFGWGGKTIRLTDGAFWSQFLGRESS----------SGKKVT 51 (434) T ss_pred Cccch-------------------hhhhhhcccccchhhhcccccccccCchHHHHHHhcCCcc----------CCceec Confidence 33221 11111110000000 000111112221000 000000 Q ss_pred cccCcceeecchHHHHHHHHHhhhhccCeee---cCCc--h--hHHHHHHHHHh--cC---HHHHHHHHHHHHHhCCeEE Q lcl|Aclame:pro 70 FTKVNNKAINNYHKLLVDQKVGYSVGNPIVF---NADD--D--NLTKLLNDLLG--EE---FDDTITELYLNASNKGVEW 137 (479) Q Consensus 70 ~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~---~~~~--~--~~~~~~~~~~~--n~---~~~~~~~~~~~~~~~G~~~ 137 (479) ...-+.++-....|+.+++-+..-|+.+ ..+. . ....+...+.. |. -..+...++...+.+|.+| T Consensus 52 ---~~~al~~~~V~~~i~~ia~~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay 128 (434) T protein:vir:43 52 ---VDKAMKLSAVWACVRLISTSVAGLPLGVYERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAY 128 (434) T ss_pred ---hhhhhccHHHHHHHHHHHHhhhhCceEEEEEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeE Confidence 0000112222345677777776677764 2111 1 11123333322 32 3456677788999999999 Q ss_pred EEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccc Q lcl|Aclame:pro 138 LHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDE 216 (479) Q Consensus 138 ~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~ 216 (479) +.+..+ .|++ .+..++|..+.+..+... . + .|.....++. ...+..+.+.++..- T Consensus 129 ~~i~~~-~G~~~~L~~l~p~~v~~~~~~~g--~----~-~y~~~~~~g~----~~~~~~~eVih~~~~------------ 184 (434) T protein:vir:43 129 AEIRRA-AGRPAALDFLLPSRVDLECDENG--R----L-KYFYTTKKGA----RREIERTNMLHIPAF------------ 184 (434) T ss_pred EEEEeC-CCcEEEEEEEcCcceEEEEcCCC--e----E-EEEEEecCce----EEEEccccEEEecCc------------ Confidence 988766 5775 578899999988776532 1 1 1222222232 122333444332110 Q ss_pred ccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh Q lcl|Aclame:pro 217 YGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE 296 (479) Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~ 296 (479) | .+...|.|.+..+...+.............+...+.|-.+++.... ..++ T Consensus 185 ------------------------~----~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~-l~~e 235 (434) T protein:vir:43 185 ------------------------T----LDGRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVDRI-LQPA 235 (434) T ss_pred ------------------------C----CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecCCC-CCHH Confidence 0 0123466767666665555544444444445555667666543222 1122 Q ss_pred H----HHHh-------hcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc--cccHHHHHHH Q lcl|Aclame:pro 297 F----IDNI-------RYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG--DKSGVALKFL 363 (479) Q Consensus 297 ~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g--~~Sg~Ai~~~ 363 (479) . ...+ ..++++.++++.+.+.++.......+.+..+.....|+..-++|+.-.+... ..++..++.. T Consensus 236 ~~~~~r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s~~e~~ 315 (434) T protein:vir:43 236 QREEFREYVKSVSGAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNWGTGLEQQ 315 (434) T ss_pred HHHHHHHHHHHhcCccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccccchHHHH Confidence 1 1111 1234455555555555544444556777778888888888888865443321 2123333222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHH Q lcl|Aclame:pro 364 YSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG--NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVS 439 (479) Q Consensus 364 ~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~--~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~ 439 (479) ... .+...|.-.+..|...+...- ........+++.+...+..|..+.++.+.++ .|+++.-.+++ T Consensus 316 ~~~----------f~~~~L~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~ 385 (434) T protein:vir:43 316 MLA----------FLTFSISSITNQIQQCVNKRLLTAPERIRYYAEFSLEGFLKADSAGRAAWYSTMAQNGFMTRNEGRR 385 (434) T ss_pred HHH----------HHHHHHHHHHHHHHHHHHhhcCChhhhcCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHH Confidence 111 222233333333332222111 1111123455555677778999999998886 58999999988 Q ss_pred hCCCCC--CHH--------HHHHHHHHHHHHHHhhhhccCC-CCCCCcCC Q lcl|Aclame:pro 440 NHPWVE--DVN--------DELERLKKQEDTQKEYDDLIPN-NQDGVIDE 478 (479) Q Consensus 440 ~l~~~~--d~~--------~El~~i~~E~~~~~~~~~~~~~-~~~~~~de 478 (479) +++.-. +-+ .-++.+.+.+.... .....++ ...+..+| T Consensus 386 ~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 386 KENLPELPGGDILTVQSNLVPIDQLGQSNKSQA-VRAALMNWFSQPEPQE 434 (434) T ss_pred HhCCCCCCCCCeEeeccCccchhhhhccCCCcc-hhhhhhccCCCCCCCC Confidence 864422 110 11222322211111 1111111 11122222 No 202 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=97.26 E-value=0.00011 Score=42.22 Aligned_cols=363 Identities=8% Similarity=-0.009 Sum_probs=159.3 Q ss_pred HHHHHHH-HhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHH Q lcl|Aclame:pro 9 TDLIKVQ-LKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVD 87 (479) Q Consensus 9 ~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~ 87 (479) |..+..- ..+.+.. ......-........|..... . .....-+..+-....|+ T Consensus 1 Mg~~~~~~~~k~~~~-----------~~~~~~~~~~~~~~~~~~~~~-----~----------v~~~~~l~~~~v~~~i~ 54 (383) T protein:vir:10 1 MGLLTPKNFSKRNAK-----------NMVYPSNPAFFTTTVGGMQLS-----Y----------VSALSALQNTNVYSVIN 54 (383) T ss_pred CCccccccccccccc-----------ccccccchhhhhhhccCcccc-----c----------cchhHhhcchHHHHHHH Confidence 1111110 0000000 000000000001111100000 0 00000112233445677 Q ss_pred HHHhhhhccCeeecCCchhHHHHHHHHHhc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcC Q lcl|Aclame:pro 88 QKVGYSVGNPIVFNADDDNLTKLLNDLLGE---EFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDS 164 (479) Q Consensus 88 ~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~ 164 (479) .+++-+..-|+++... ....+++ .-| ........+....+.+|.+|+.+..+. ..+...+|.++.+..+. T Consensus 55 ~ia~~ia~~~~~~~~~--~~~~ll~--~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~~---~~~~p~~~~~v~~~~~~ 127 (383) T protein:vir:10 55 RIASDVSSAHFKTENT--ATLNRLE--SPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGN 127 (383) T ss_pred HHHHhhccCceeeccc--chhhhhh--CCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCc---eeEeecCcceEEEEEcC Confidence 7777777778776322 2222222 112 345566778888889999999886542 23334444444333322 Q ss_pred CCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEE Q lcl|Aclame:pro 165 KRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIP 244 (479) Q Consensus 165 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~ 244 (479) . ... ++......+ ....|.++.+.+++... +.+ T Consensus 128 ~---~~~----~~~~~~~~~----~~~~~~~~evih~r~~~------------------------------~~~------ 160 (383) T protein:vir:10 128 M---GIV----YTVLESNDR----PKMVLRQDQMLHFRLMP------------------------------DPQ------ 160 (383) T ss_pred C---ceE----EEEEEcCCc----eEEEEcccceEEeccCC------------------------------CCc------ Confidence 1 111 111111111 11122333333322100 000 Q ss_pred ecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH----HHHh-------hcccceecCCCC Q lcl|Aclame:pro 245 FKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF----IDNI-------RYYKSIKVDGGG 313 (479) Q Consensus 245 ~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~----~~~~-------~~~~~~~~~~~~ 313 (479) .+...|.|.+..+...++....+..-....+...+.|-.++.-......++. ...+ ..++++.++++. T Consensus 161 -~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~ 239 (383) T protein:vir:10 161 -YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGF 239 (383) T ss_pred -ccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCCccccCCCc Confidence 0113478888888887777777666666667777777655543222211221 1111 123455566555 Q ss_pred cceeeecCCCHHH-HHHHHHHHHHHHHHHhCCCCCcccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 GVDKLEINIPVEA-KKELLDRLEKNIIIFGQGVNPESQN--TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVC 390 (479) Q Consensus 314 ~~~~~~~~~~~~~-~~~~~~~l~~~i~~~s~~~~~~~~~--~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 390 (479) +++.+..+..... +.+..+..++.|...-++|+.-.+. .++.++..++.. ...+...|.-+++.|. T Consensus 240 ~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~-----------~~~~~~~l~P~~~~ie 308 (383) T protein:vir:10 240 DYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQI-----------KATYLANLNSYVNPIV 308 (383) T ss_pred eEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHH-----------HHHHHHHHHHHHHHHH Confidence 5555554443333 3466677788888887887644332 222222222211 0111122222333222 Q ss_pred HHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhcc Q lcl|Aclame:pro 391 EYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLI 468 (479) Q Consensus 391 ~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~ 468 (479) ..+...- -...+++.+...+..|..+.++++.++ .|+++...++++++...-+..++. ..... T Consensus 309 ~~l~~~l----~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~-----------~~~~~ 373 (383) T protein:vir:10 309 DELRLKM----NAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLP-----------EFKPL 373 (383) T ss_pred HHHHHhh----CCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccCCccc-----------ccCCC Confidence 2222110 012467777888889999999999886 589999999888754221111110 00111 Q ss_pred CCCCCCCcCC Q lcl|Aclame:pro 469 PNNQDGVIDE 478 (479) Q Consensus 469 ~~~~~~~~de 478 (479) .+..+|+.|| T Consensus 374 ~~~~~gGd~e 383 (383) T protein:vir:10 374 TNETKGGDDK 383 (383) T ss_pred cccCCCCCCC Confidence 2233455555 No 203 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=97.25 E-value=0.00012 Score=42.14 Aligned_cols=425 Identities=10% Similarity=0.030 Sum_probs=159.2 Q ss_pred CCcccCcHHHHHHHHhccChHHHHHHHHH----HHHHhhHHHHHHHHHHhccCCccccccccccccccccccccc---Cc Q lcl|Aclame:pro 2 LNIYISETDLIKVQLKKESTINLVKVIEH----YILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTK---VN 74 (479) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~---~~ 74 (479) |.+.-.--+.+-...++.+ +...++. .+.+..-+-....++-+.|..-....+..+...-........ .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 77 (535) T protein:vir:10 1 MAILKDLRNAFSLSNKKST---SYIELGDYDKDIVNKAIRPGRASARDTVDGIDIADGNVAGQYSVASISDVLSTKKLLK 77 (535) T ss_pred ChhhHHHHHHHHhhhhhhh---hhHHHhhhhHHHHHhhhhhhhhhhhccccccccccCCcccccccCccccccCHHHHHH Confidence 1111000111111111111 1111111 011100000011123333311000000000000000000000 00 Q ss_pred ceeecchHHHHHHHHHhhh-------------hccCeeec-----CCchhH--HHHHHHHHh---cCH-------HHHHH Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKVGYS-------------VGNPIVFN-----ADDDNL--TKLLNDLLG---EEF-------DDTIT 124 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a~~l-------------~g~~~~~~-----~~~~~~--~~~~~~~~~---n~~-------~~~~~ 124 (479) .-...++.+.++++.+..+ .+=|+++- ...... ...+..++. |.+ ..+.. T Consensus 78 ~~~~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~ 157 (535) T protein:vir:10 78 AYADNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLT 157 (535) T ss_pred HhccChhHHHHHHHHHHHHHHHHHHHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHHHHH Confidence 0001223334444433222 12233321 111111 112223322 322 23445 Q ss_pred HHHHHHHhCC-eEEEEEEeCCCCceE-EEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEE Q lcl|Aclame:pro 125 ELYLNASNKG-VEWLHPYINRKGEFK-YVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFI 202 (479) Q Consensus 125 ~~~~~~~~~G-~~~~~v~~d~~~~~~-i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~ 202 (479) .++.+.+.+| .+|+.+..+..|+|. +..++|..+.+..++....... .+|... ..+. ...+.++.+.+++ T Consensus 158 ~lv~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~d~~~~~~~~---~~~~~~-~~~~----~~~~~~~eiih~~ 229 (535) T protein:vir:10 158 KIINDMYVQDQINIERIFKNDSNELDHFNAVDASKVVISYSPRSKDQPR---KFEQFV-SETK----SVKFSERNLTFIN 229 (535) T ss_pred HHHHHHHhhCCceEEEEEECCCCcEEEEEEeCCceeEEEEcCccccCce---EEEEEe-cCce----eEEECcccEEEEe Confidence 5666777776 579999888888874 8999999999877754322211 112211 1111 1123444444432 Q ss_pred EcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 203 ERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEV 282 (479) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p 282 (479) ..... .......|.|.++.+...+........-..+.+...+.| T Consensus 230 ~~~~~------------------------------------~~~~~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~ng~~p 273 (535) T protein:vir:10 230 YWNLS------------------------------------DTDRRGYGYSPVEASIPLIRAIYDTEQFNARFFSQGGTT 273 (535) T ss_pred ccCCC------------------------------------CcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCc Confidence 21000 000112477878777777777666555555556666666 Q ss_pred eeeee--cCCc-cchhh----HHHHhhc--------ccceecCCCCcceeeecCC--CHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 283 IYVLK--EYPG-TSLQE----FIDNIRY--------YKSIKVDGGGGVDKLEINI--PVEAKKELLDRLEKNIIIFGQGV 345 (479) Q Consensus 283 ~l~~~--g~~~-~~~~~----~~~~~~~--------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~i~~~s~~~ 345 (479) -.++. +... ...++ +...+.. +++..+ .+.+++|..... ....+.+..+...+.|...-++| T Consensus 274 ~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl-~~~g~~~~~l~~~~~D~qfle~~~~~~~eIa~afgVP 352 (535) T protein:vir:10 274 RGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPIL-AAKDAKFVNMTQNSRDMEFDKFLNFMIYDTAAIFQMQ 352 (535) T ss_pred cEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccc-cCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCC Confidence 54443 3211 11122 2211111 122222 233455555444 44456666777788888777888 Q ss_pred CCcccccc-----cccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHH Q lcl|Aclame:pro 346 NPESQNTG-----DKSGVALKFLYSLLDLKCSKT-EKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEA 419 (479) Q Consensus 346 ~~~~~~~g-----~~Sg~Ai~~~~~~l~~k~~~~-~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~ 419 (479) +.-.+... |.++... ..+... ++.. .......|.-.++.+...+...--...+ ..+.+.|......|.. T Consensus 353 p~~lG~~~~at~sn~~~~~~-~~~~s~---~E~~~~~~~~~~L~P~l~~ie~~ln~~Ll~~~~-~~~~f~f~~l~~~d~~ 427 (535) T protein:vir:10 353 PEEINFPNNGGSTGKSGTKS-VNEGST---AKAKLESSKDKGLTPLLSFIEQVINDKIMRYVD-TDYRFSFTLGDAQDKL 427 (535) T ss_pred HHHhccccCcccccchhhhh-hhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC-CeEEEEeccccccCHH Confidence 75544322 1111111 111110 1111 1122223333333333322211111111 2467888888888888 Q ss_pred HHHHHHHH-HhccCChHHHHHhCCCC--CCHHHHHHHHHHHHH--HHHhhhhccC------------------------- Q lcl|Aclame:pro 420 EKIDMAAK-STGIVSDETIVSNHPWV--EDVNDELERLKKQED--TQKEYDDLIP------------------------- 469 (479) Q Consensus 420 e~a~~~~k-~~g~is~et~~~~l~~~--~d~~~El~~i~~E~~--~~~~~~~~~~------------------------- 469 (479) +.+++... ..|.++.-.++++++.- +.-+.-+-.+..+.- .........+ T Consensus 428 ~r~~~~~~~~~g~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~~~~~~~~~ 507 (535) T protein:vir:10 428 QEEQVWKLKLANGYFINEYRKDHGLKTVDGLDVPGFIGSAENFINATGFGQPNVPDSSDDSGSTLGERERQERIQHSKDY 507 (535) T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCCCCCccccccccchhhcccccccccccCCCCCCCccccCCccccCccccccccc Confidence 77766543 35778998888887432 110100000000000 0000000000 Q ss_pred --CCCCCCcCC--------C Q lcl|Aclame:pro 470 --NNQDGVIDE--------T 479 (479) Q Consensus 470 --~~~~~~~de--------t 479 (479) ..+++.... + T Consensus 508 ~~g~~~~~~~~~~~~~~~~~ 527 (535) T protein:vir:10 508 EKGKDDPKSPLPKPSESDDV 527 (535) T ss_pred ccCCCCCCCCCCcCCCCCcc Confidence 000000000 0 No 204 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=97.25 E-value=0.00012 Score=42.14 Aligned_cols=372 Identities=12% Similarity=-0.021 Sum_probs=149.8 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQ 88 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~ 88 (479) |..+.. ........-.....+.-|... .. .-..+-+..+-.-..|+. T Consensus 1 m~~f~~-----------------~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~Al~~~~V~~~i~~ 47 (406) T protein:vir:97 1 MSFFQP-----------------LGTSKVSYDDYISSVLAGDVS---------------QK-YLGVSALKNSDILTATSI 47 (406) T ss_pred Cccccc-----------------cCCCCCCcchHHHHHhcCCCC---------------cc-cccchhhccHHHHHHHHH Confidence 111000 000000000001111111100 00 000000011111224555 Q ss_pred HHhhhhccCeeecCCch-h--HHHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCC-CCce-EEEEEcccee Q lcl|Aclame:pro 89 KVGYSVGNPIVFNADDD-N--LTKLLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINR-KGEF-KYVIIPAEEA 158 (479) Q Consensus 89 ~a~~l~g~~~~~~~~~~-~--~~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~-~~~~-~i~~~~p~~~ 158 (479) +|+-+..-|+.+-..+. . ...+...+. -|. ...+...+...++.+|.+|+.+..+. .|.+ .+..++|..+ T Consensus 48 Ia~~iA~lp~~~~~~~g~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v 127 (406) T protein:vir:97 48 IAGDIARFPLVKKDVNGDIIHDEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSET 127 (406) T ss_pred HHHhhhhCeeEEEecCccccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCee Confidence 55555555665432221 1 111222232 132 34566778888999999999998875 4554 6888999998 Q ss_pred EEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 159 IPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWG 238 (479) Q Consensus 159 ~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 238 (479) .+..++.. ++. |.+....+... ..+....+.+++.- T Consensus 128 ~v~~~~~~--~~~-----y~~~~~~~~~~---~~~~~~evih~r~~---------------------------------- 163 (406) T protein:vir:97 128 TVEETDNH--EIV-----YTFTDMLTAKQ---VKCFAHDVIHWKFF---------------------------------- 163 (406) T ss_pred EEEEcCCc--eEE-----EEEEecCCceE---EEEccccEEEecCC---------------------------------- Confidence 87665432 111 22221111110 11223333332100 Q ss_pred ccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---HHHH---h----hccccee Q lcl|Aclame:pro 239 KVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---FIDN---I----RYYKSIK 308 (479) Q Consensus 239 ~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---~~~~---~----~~~~~~~ 308 (479) | .+...|.|.+..+...++.......-..+.+...+.|-.++........+. .... . ..++++. T Consensus 164 --~----~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~g~n~g~~~v 237 (406) T protein:vir:97 164 --S----HDTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQLSGDARQRARQEFEKMREGSVGGSPLV 237 (406) T ss_pred --C----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCCHHHHHHHHHHHHHHhcccccCceee Confidence 0 011237777776666665544444434444444445544333211111111 1111 1 1234555 Q ss_pred cCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 VDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWF 388 (479) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~l 388 (479) ++++.+.+.++.......+.+..+...+.|...-+.|+.-.+..+.-| .+... ....+...|.-.++. T Consensus 238 l~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~~--~~e~~----------~~~f~~~~l~P~~~~ 305 (406) T protein:vir:97 238 FDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVNSPNQ--SVAQL----------MEDYVTNDLPFYFDA 305 (406) T ss_pred cCCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCCCCcc--hHHHH----------HHHHHHHHHHHHHHH Confidence 666555555544433334555556666777777677765554322212 11111 111122233333333 Q ss_pred HHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHH----------HHHHHH Q lcl|Aclame:pro 389 VCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVN----------DELERL 454 (479) Q Consensus 389 i~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~----------~El~~i 454 (479) |...+...-..+.......+.|.- ..+....++++.++ .|+++...++++++.-. ++. .-++.+ T Consensus 306 ie~~l~~kll~~~~~~~~~i~fd~--~~~~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD~~~~~~n~~~~~~~ 383 (406) T protein:vir:97 306 ITSELGLKTLNDKDRRLYHIEFDT--RSVTGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMDRYQSSLNYVFLDKK 383 (406) T ss_pred HHHHHhhhhcChhhccceeEEEec--CccchhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeEeeccCccchhcc Confidence 322222111111111123344421 12333344555554 58999999988875422 211 111111 Q ss_pred HHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 455 KKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 455 ~~E~~~~~~~~~~~~~~~~~~~det 479 (479) ++ -..........++.++.+|+| T Consensus 384 ~~--~~~~~~~~~~gg~~~~~~~~~ 406 (406) T protein:vir:97 384 EE--YQDKVGIKGKGGEVNAEEDKS 406 (406) T ss_pred cc--cccccccccCCCCCCCCCCCC Confidence 11 011112233344555666666 No 205 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=97.22 E-value=0.00013 Score=41.93 Aligned_cols=418 Identities=11% Similarity=0.061 Sum_probs=181.7 Q ss_pred CCCcc-cCcHHHHH----HHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCC-cccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIY-ISETDLIK----VQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNT-DVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~-~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |-.+= ....+.-. ....++....-++.-..-..+ .+-+....++ .|.. +.+. ++... -....+- T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~l~---~~~~~----~F~Gy~~ 115 (698) T protein:vir:10 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRE--RRAASYALDF-NGTSMDALS---FVTSS----GFPGFPT 115 (698) T ss_pred hcccccccccccccccCCCccccccccceeccccCCccc--cchhhhhhcc-cccccccch---hhhcc----CcchHHH Confidence 21111 00000000 000111100000000000000 0011111111 1110 0000 00000 0000000 Q ss_pred --ceeecchHHHHHHHHHhhhhccCeeecCC--------------------c-hhHHHHHHHHHhcCHHHHHHHHHHHHH Q lcl|Aclame:pro 75 --NKAINNYHKLLVDQKVGYSVGNPIVFNAD--------------------D-DNLTKLLNDLLGEEFDDTITELYLNAS 131 (479) Q Consensus 75 --~ri~~n~~~~iv~~~a~~l~g~~~~~~~~--------------------~-~~~~~~~~~~~~n~~~~~~~~~~~~~~ 131 (479) .=..++-++..+..++..+..+-..+++. + +.+..+-..+.+=++...+.++++.+- T Consensus 116 la~laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~aR 195 (698) T protein:vir:10 116 LVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ 195 (698) T ss_pred HHHHhhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 00012334455666666665554333211 1 233333444555567788899999999 Q ss_pred hCCeEEEEEEeCCCCc----e--------------EEEEEccceeEEEE-cCCCCCceEEEEEEEeeecccCceEEEEEE Q lcl|Aclame:pro 132 NKGVEWLHPYINRKGE----F--------------KYVIIPAEEAIPIW-DSKRQRELVAFIRFYYIEDIDGNKIKRVEY 192 (479) Q Consensus 132 ~~G~~~~~v~~d~~~~----~--------------~i~~~~p~~~~~~~-d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 192 (479) .||.+..++.++.++. | .+.+++|..+.|-. +..++-. -.+ T Consensus 196 lfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGL~ViDp~~vtP~~~n~~dP~s--------------------pdf 255 (698) T protein:vir:10 196 AFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVA--------------------DDF 255 (698) T ss_pred cccceEEEEEeecCccccccccccccccccCccceeeeeecccccccchhhhccchh--------------------hcc Confidence 9999887776644331 1 15555665555521 1001000 011 Q ss_pred EeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEE-ecCCCCCCchHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 193 YTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIP-FKNNEKCVSDLTFYKSLIDIYDNNIST 271 (479) Q Consensus 193 y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~-~~n~~~g~s~~~~v~~lid~~~~~~s~ 271 (479) |-|..++ +. +.. +.... ...... . .+|-.. -..+..|.|....+.+-+++.+++... T Consensus 256 gkP~~y~--V~-G~~-IH~SR---L~~~vg--------~-------pvpd~LKp~y~f~G~Sv~q~~~e~V~~~~rT~~~ 313 (698) T protein:vir:10 256 YKPSTWW--MI-GSE-VHATR---LHTIVS--------R-------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQS 313 (698) T ss_pred CCCceEE--Ee-cce-eccee---EEEecC--------C-------CchhhhcchhccCCccHHHHHHHHHHHHHHHhhh Confidence 1111111 10 000 00000 000000 0 011110 012356889888888888888877666 Q ss_pred HHHHHHHhccceee------eecCCccchh---hHHHHhhccc-ceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 272 LADNLDEIQEVIYV------LKEYPGTSLQ---EFIDNIRYYK-SIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIF 341 (479) Q Consensus 272 ~~~~~~~~~~p~l~------~~g~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 341 (479) ....+..++...+. +.+....... +.....+... .+.++ +.+=+|.+.+.+...+...+......|... T Consensus 314 v~~Li~~~~~~~l~~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~llD-k~~Eefeq~st~lSGLddVi~qf~q~VAga 392 (698) T protein:vir:10 314 VSDIVKQFSVSGILMDLAQALTPGANVDLSMRAELINRYRDNRNILFLD-KATEEFFQFNTPLSGLDALQAQAQEQMSAV 392 (698) T ss_pred HHHHHHHhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCccceEEEe-cCCcceEEEecCcCCHHHHHHHHHHHHHhh Confidence 66655444333221 1110000111 1112223332 33444 334467777888889999999999999999 Q ss_pred hCCCCCccccc---c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCC Q lcl|Aclame:pro 342 GQGVNPESQNT---G-DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIIN 417 (479) Q Consensus 342 s~~~~~~~~~~---g-~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d 417 (479) +.+|-.-..+. | |+||++=..-|...+. ...+..+...+++++.+|.. +..+..+. ++.+.|++--..+ T Consensus 393 a~IPltkLfGqSPkGlNATGE~D~rnYYD~I~--s~Qe~~L~p~L~rl~~ii~r--S~~G~idp---~i~~~fnPL~qmt 465 (698) T protein:vir:10 393 SHIPLIKLLGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQL--SLFGAVDP---SIKWQWNALRELD 465 (698) T ss_pred hcCchhhhhccCCcccCccchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HhcCCCCC---cceEEeCCCCCcC Confidence 98886554443 2 5788874444444332 33477889999998888754 33344332 5889999999999 Q ss_pred HHHHHHHHHH---------HhccCChHHHHHhC------CCC--CCHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCC-C Q lcl|Aclame:pro 418 EAEKIDMAAK---------STGIVSDETIVSNH------PWV--EDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDE-T 479 (479) Q Consensus 418 ~~e~a~~~~k---------~~g~is~et~~~~l------~~~--~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~de-t 479 (479) +.|.|+.-.| ..|+|+......+| ++. .|+..+-- +-+|...+..+...+....+|...+ | T Consensus 466 d~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (698) T protein:vir:10 466 DLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPG-APADDDIDGVLTYVQRMAEGGDTGAPT 544 (698) T ss_pred HHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccCCcccCC-CCCCCcchHHHhhhcCCcCCCCccccc Confidence 9999987544 24778777776665 221 12111100 0011111122122222222222222 2 No 206 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=97.21 E-value=0.00013 Score=41.92 Aligned_cols=414 Identities=10% Similarity=0.044 Sum_probs=180.1 Q ss_pred CCCcc-cCcHHHHH----HHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCC-cccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIY-ISETDLIK----VQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNT-DVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~-~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) |-.+= ....+.-. .+..++....-++.-..-..+ .+-+....++ .|.. +.+. ++... -....+- T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~l~---~~~~~----~F~Gy~~ 115 (695) T protein:vir:78 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRE--RRAASYALDF-NGTSMDALS---FVTSS----GFPGFPT 115 (695) T ss_pred hcccccccccccccccCCCcccccceeceeccccCCccc--cchhhhhhcc-cccccccch---hhhcc----CcchHHH Confidence 21110 00000000 000011100000000000000 0001111111 1100 0000 00000 0000000 Q ss_pred --ceeecchHHHHHHHHHhhhhccCeeecCC--------------------c-hhHHHHHHHHHhcCHHHHHHHHHHHHH Q lcl|Aclame:pro 75 --NKAINNYHKLLVDQKVGYSVGNPIVFNAD--------------------D-DNLTKLLNDLLGEEFDDTITELYLNAS 131 (479) Q Consensus 75 --~ri~~n~~~~iv~~~a~~l~g~~~~~~~~--------------------~-~~~~~~~~~~~~n~~~~~~~~~~~~~~ 131 (479) .=..++-++..+..++..+..+-..+++. + +.+..+-..+.+=++...+.++++.+- T Consensus 116 la~laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~eaik~aR 195 (695) T protein:vir:78 116 LVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ 195 (695) T ss_pred HHHHhhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 00012334455666666665544333211 1 233334444555577788899999999 Q ss_pred hCCeEEEEEEeCCCCc----e--------------EEEEEccceeEEEE-cCCCCCceEEE-EEEEeeecccCceEEEEE Q lcl|Aclame:pro 132 NKGVEWLHPYINRKGE----F--------------KYVIIPAEEAIPIW-DSKRQRELVAF-IRFYYIEDIDGNKIKRVE 191 (479) Q Consensus 132 ~~G~~~~~v~~d~~~~----~--------------~i~~~~p~~~~~~~-d~~~~~~~~~~-i~~~~~~~~~~~~~~~~~ 191 (479) .||.+..++..+.++. | .+.+++|..+.|-. +..++-.+-++ =.+|.+. |.. T Consensus 196 lfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~---G~k----- 267 (695) T protein:vir:78 196 AFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---GTE----- 267 (695) T ss_pred cccceEEEEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe---ceE----- Confidence 9999987776644331 1 15566666666521 10011000000 0011110 000 Q ss_pred EEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceE-EecCCCCCCchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 192 YYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFI-PFKNNEKCVSDLTFYKSLIDIYDNNIS 270 (479) Q Consensus 192 ~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~s~~~~v~~lid~~~~~~s 270 (479) +| .-+...|+ . .+ +|-. .-..+..|.|....+.+-+++.+++.. T Consensus 268 IH-~SRL~~f~-------------------g--------~p-------lPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~ 312 (695) T protein:vir:78 268 VH-ATRLHTIV-------------------S--------RP-------VGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQ 312 (695) T ss_pred Ee-eeeEEEec-------------------C--------CC-------chhhhhcccccCcccHHHHHHHHHHHHHHHHh Confidence 00 00000000 0 00 1100 001235688988888888888888776 Q ss_pred HHHHHHHHhccceeee------ecCCccchh---hHHHHhhcc-cceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 271 TLADNLDEIQEVIYVL------KEYPGTSLQ---EFIDNIRYY-KSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIII 340 (479) Q Consensus 271 ~~~~~~~~~~~p~l~~------~g~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 340 (479) .....+..++...+.. .+....... +.....+.. +++.++ +.+=+|.+.+.+...+...+......|.. T Consensus 313 ~v~~Li~~~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~llD-k~~Eefeq~stslSGLddVi~qf~q~VAg 391 (695) T protein:vir:78 313 SVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLD-KATEEFFQFNTPLSGLDALQAQAQEQMSA 391 (695) T ss_pred HHHHHHHhhhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEe-cCCcceEEEecccCCHHHHHHHHHHHHHh Confidence 6666665444332211 110000111 111122333 233444 33446777788889999999999999999 Q ss_pred HhCCCCCccccc---c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCC Q lcl|Aclame:pro 341 FGQGVNPESQNT---G-DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMII 416 (479) Q Consensus 341 ~s~~~~~~~~~~---g-~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~ 416 (479) .+.+|-.-..+. | |+||++=..-|...+. ...+..+...+++++.+|.. +..+..+. ++.+.|++--.. T Consensus 392 aa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~--s~Qe~~L~p~L~rl~~ii~r--S~~G~idp---di~~~fnPL~qm 464 (695) T protein:vir:78 392 VSHIPLIKLLGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQL--SLFGAVDP---SIKWQWNALREL 464 (695) T ss_pred hhcCchhhhhccCCccccccchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HhcCCCCC---cceEEeCCCCCc Confidence 999886554443 2 5788874444444433 33477889999998888754 33344332 588899999999 Q ss_pred CHHHHHHHHHH---------HhccCChHHHHHhC------CCCC--CHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 417 NEAEKIDMAAK---------STGIVSDETIVSNH------PWVE--DVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 417 d~~e~a~~~~k---------~~g~is~et~~~~l------~~~~--d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) ++.|.|+.-.| ..|+|+......+| ++.. |+..+=-.. +|.+.........+ .+.++|| T Consensus 465 td~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~-~~~~~~~~~~~~~~---~~~~~~~ 540 (695) T protein:vir:78 465 DDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVP-ADDDIDGVLTYVQR---LAEGGDT 540 (695) T ss_pred CHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcC-ccchhhhhHhhhcC---ccccccc Confidence 99999886544 24778777776664 2211 111000000 01110111000011 1112222 No 207 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=97.19 E-value=0.00014 Score=41.76 Aligned_cols=364 Identities=11% Similarity=0.047 Sum_probs=157.7 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccc--cccccc---cccccc--ccCcceeecch Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRR--YYLLDG---AKVDDF--TKVNNKAINNY 81 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~--~~~~~~---~~~~~~--~~~~~ri~~n~ 81 (479) |..+... ....+....... ...... ...... .....-...+- T Consensus 1 M~~f~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 49 (386) T protein:vir:48 1 MPIFNIT-------------------------------NLATESPPISQGGFFDITDPDFLSTLNGSEWVSAESALRNSD 49 (386) T ss_pred Ccccccc-------------------------------cccccccccccccccccccchhcccccCCceechhhhhcchH Confidence 1111110 000000000000 000000 000000 00000012233 Q ss_pred HHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHh-cCHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeE Q lcl|Aclame:pro 82 HKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLG-EEFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAI 159 (479) Q Consensus 82 ~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~ 159 (479) ....|+.+++-+.+-|+++.- .....++..-.. .....+...++.+.+.+|.+|+.+..+.+|.+ .+..++|..+. T Consensus 50 v~~~i~~ia~~ia~~p~~~~~--~~~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~ 127 (386) T protein:vir:48 50 LFSIINQLSNDLATVKLTASR--KQLQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVS 127 (386) T ss_pred HHHHHHHHHHhhccCceeecc--chhHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeE Confidence 445677777777777776532 222222221111 12345667788899999999999999988875 67889999988 Q ss_pred EEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 160 PIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGK 239 (479) Q Consensus 160 ~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 239 (479) +..+.... . .+|.+.. ++........+..+.+.+++.. ++. T Consensus 128 v~~~~~~~-~-----~~y~~~~-~~~~~~~~~~~~~~evih~~~~------------------------------~~~-- 168 (386) T protein:vir:48 128 FNRLDNKD-G-----IYYNITF-DDPRIPPKQHVPQGDVLHFKLL------------------------------SVD-- 168 (386) T ss_pred EEEcCCCc-e-----EEEEEEe-cCccccceeEecCccEEEecCC------------------------------CCC-- Confidence 76654321 1 1122211 1111111222333344333210 000 Q ss_pred cceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH---H-----hhcccceecCC Q lcl|Aclame:pro 240 VPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID---N-----IRYYKSIKVDG 311 (479) Q Consensus 240 vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~---~-----~~~~~~~~~~~ 311 (479) ....|.|.+..+...+.............+...+.|-.+++.......+.... . ...++++.+++ T Consensus 169 -------~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~~~~~e~~~~~~~~~~~~~~n~g~~~vl~~ 241 (386) T protein:vir:48 169 -------GGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKGGGLLDFKTKLSRSRQAMKQMQGGPLVLDD 241 (386) T ss_pred -------CceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHHhhcCCCCceecCC Confidence 01247787777777666666555555555666667766665433322222111 0 11234455565 Q ss_pred CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD-KSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVC 390 (479) Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~-~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 390 (479) +.+++.+..+.....+.+..+...+.|+..-++|+.-.+..++ .+.+... ...+...|.-+++.|. T Consensus 242 g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~e~~~-------------~~~~~~~l~P~~~~ie 308 (386) T protein:vir:48 242 LEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGGQGDQQSSLEMS-------------LDLYNKAVSRYLRPFL 308 (386) T ss_pred CceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHH-------------HHHHHHHHHHHHHHHH Confidence 5555555544444556777788888888887888665543221 1111110 0112222222222222 Q ss_pred HHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 391 EYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVNDELERLKKQEDTQKEYDD 466 (479) Q Consensus 391 ~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~El~~i~~E~~~~~~~~~ 466 (479) ..+...-.. .+++.+...+-.+....+..+.++ +|+++.-.+++.++. +.. .|+.... ..... T Consensus 309 ~~l~~~l~~-----~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~lg~~~~~~--~~~~~~~------~~~~~ 375 (386) T protein:vir:48 309 SELSQKLSC-----DVDADILPAVDPTGSNSVSRINSMVKSGTLAQNQGLYILQQAEILP--KELPEGE------NPNKT 375 (386) T ss_pred HHHHHhhcc-----hhhcchhhhhccChHHHHHHHHHHHhCCCcCHHHHHHHhhcCCCCC--ccchhhc------CCCCC Confidence 222211111 111222222234445556666565 679999888887632 221 1221110 00001 Q ss_pred ccCCCCCCCcCC Q lcl|Aclame:pro 467 LIPNNQDGVIDE 478 (479) Q Consensus 467 ~~~~~~~~~~de 478 (479) .....++.+ +| T Consensus 376 ~~~gGd~~~-~~ 386 (386) T protein:vir:48 376 TLKGGEING-ED 386 (386) T ss_pred ccCCCCCCC-CC Confidence 111111111 11 No 208 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=97.16 E-value=0.00015 Score=41.61 Aligned_cols=359 Identities=12% Similarity=0.032 Sum_probs=156.7 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccc-cccccccccccCc------ceeecch Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYL-LDGAKVDDFTKVN------NKAINNY 81 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~-~~~~~~~~~~~~~------~ri~~n~ 81 (479) |..+.. ...+............ ............. .-+..+- T Consensus 1 Mglf~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~ 49 (384) T protein:vir:49 1 MPIFNI-------------------------------TNLATESPPSNQDSFFDITDPEFLDALNGSEWVSAETALKNSD 49 (384) T ss_pred Cccccc-------------------------------cccCcccccccchhhccccchhhcccccCCceechhhhhccHH Confidence 111110 0011000000000000 0000000000000 0012233 Q ss_pred HHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHh-cCHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeE Q lcl|Aclame:pro 82 HKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLG-EEFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAI 159 (479) Q Consensus 82 ~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~ 159 (479) ....|+.+++-+.+-|+++.-. ....+...=.. .....+...+...++.+|.+|+.+..+.+|++ .+..++|..+. T Consensus 50 V~~~i~~Ia~~ia~l~~~~~~~--~~~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~ 127 (384) T protein:vir:49 50 LFSIISQLSNDLATAKITTSRK--QLQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVS 127 (384) T ss_pred HHHHHHHHHHHHhhCceeeecc--hhhhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeE Confidence 4456788888887778876422 11122111000 13455667788899999999999999988876 68889999998 Q ss_pred EEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 160 PIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGK 239 (479) Q Consensus 160 ~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 239 (479) +..++... .+ +|.+...+. .......+..+.+.+++.. ++. T Consensus 128 v~~~~~~~-~~-----~y~~~~~~~-~~~~~~~~~~~eVih~~~~------------------------------~~~-- 168 (384) T protein:vir:49 128 FNRLDNQN-GL-----YYNITFDDP-RIPPKQHVPQGDILHFRLL------------------------------SVD-- 168 (384) T ss_pred EEEcCCCc-eE-----EEEEEecCc-cccceeEecCccEEEecCC------------------------------CCC-- Confidence 76654321 11 122111111 0011122333333333210 000 Q ss_pred cceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHH--------hhcccceecCC Q lcl|Aclame:pro 240 VPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDN--------IRYYKSIKVDG 311 (479) Q Consensus 240 vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~--------~~~~~~~~~~~ 311 (479) ....|.|.+..+...++..........+.+...+.|-.+++-.+....++.... ...++++.+++ T Consensus 169 -------~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~n~~~~~vl~~ 241 (384) T protein:vir:49 169 -------GGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLLDFKTKQSRSRQAMKQMQGGPLVLDD 241 (384) T ss_pred -------CceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHHHHHHHhcccCCccceecCC Confidence 113477877777777776666666666666777777766653322222222111 12244556666 Q ss_pred CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT--GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFV 389 (479) Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~--g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li 389 (479) +.+++.+..+.....+.+..+...+.|+..-++|+.-.+.. +..++..++..+...+.. ...-+...+.+.+ T Consensus 242 g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~~---~l~pi~~~i~~~l--- 315 (384) T protein:vir:49 242 LEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVSR---FLRPFVSELSKKL--- 315 (384) T ss_pred CceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHHHHHHHHHHH---HHHHHHHHHHHHh--- Confidence 65555555444555567778888888888888886554432 223444443322222111 1111111111111 Q ss_pred HHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHH--HhccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 390 CEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAK--STGIVSDETIVSNH---PWVEDVNDELERLKKQEDTQKEY 464 (479) Q Consensus 390 ~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k--~~g~is~et~~~~l---~~~~d~~~El~~i~~E~~~~~~~ 464 (479) ..-+ .....+..-.+.......+.. .+|+.++-.+.+.+ |+.+ -|+.++ T Consensus 316 ~~~l-------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~---ne~r~~---------- 369 (384) T protein:vir:49 316 SCEV-------------DADILPAVDPTGSNYIGLINSMVKTGTLAQNQGLYVLQQAEILP---KDLPEG---------- 369 (384) T ss_pred chhh-------------hhhhhhhhhccchHHHHHHHHHhhcCcccHHHHHHHHhhCCCCC---hhHHHH---------- Confidence 0000 000001111111111212222 25677777776654 4433 232221 Q ss_pred hhccCCCCCCCcCCC Q lcl|Aclame:pro 465 DDLIPNNQDGVIDET 479 (479) Q Consensus 465 ~~~~~~~~~~~~det 479 (479) ...+...+|.++|- T Consensus 370 -~~~~p~~gGd~~~~ 383 (384) T protein:vir:49 370 -ETDSTLKGGETNEQ 383 (384) T ss_pred -cCCCCCCCCCCCCC Confidence 12222334444444 No 209 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=97.08 E-value=0.00018 Score=41.11 Aligned_cols=406 Identities=10% Similarity=0.038 Sum_probs=179.0 Q ss_pred CCCccc-----C--cHHHHH----HHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccc Q lcl|Aclame:pro 1 MLNIYI-----S--ETDLIK----VQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDD 69 (479) Q Consensus 1 ~~~~~~-----~--~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~ 69 (479) -+|+.. . +--.+. .+...-++.....+.. -+.=.+. -++.+ -+|.|-.=+-|.-.. . T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l-~~~~~~~F~Gy~~la--------~- 118 (695) T protein:vir:36 51 ALNALDAAPVVEPSPSLRLARQFEVDVSNYTPRERRAASY-ALDFNGT-SMDAL-SFVTSSGFPGFPTLV--------L- 118 (695) T ss_pred cccccccccccCCCcccccceeceecccccCccccchhhh-hhccccc-ccccc-hhhhccCcchHHHHH--------H- Confidence 222210 0 000000 0000000000000000 0000000 00111 112111000000000 0 Q ss_pred cccCcceeecchHHHHHHHHHhhhhccCeeecCC--------------------c-hhHHHHHHHHHhcCHHHHHHHHHH Q lcl|Aclame:pro 70 FTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNAD--------------------D-DNLTKLLNDLLGEEFDDTITELYL 128 (479) Q Consensus 70 ~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~--------------------~-~~~~~~~~~~~~n~~~~~~~~~~~ 128 (479) =..++-++..+..++..+..+-..+++. + +.+..+-..+.+=++...+.++++ T Consensus 119 ------laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~erL~V~~~l~eaik 192 (695) T protein:vir:36 119 ------LAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI 192 (695) T ss_pred ------HhhccchhhHHHHHHHHhhcccceecccchhhhhhccccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHH Confidence 0012334455666666665444333211 1 233334444555567788899999 Q ss_pred HHHhCCeEEEEEEeCCCCc----e--------------EEEEEccceeEEEE-cCCCCCceEEE-EEEEeeecccCceEE Q lcl|Aclame:pro 129 NASNKGVEWLHPYINRKGE----F--------------KYVIIPAEEAIPIW-DSKRQRELVAF-IRFYYIEDIDGNKIK 188 (479) Q Consensus 129 ~~~~~G~~~~~v~~d~~~~----~--------------~i~~~~p~~~~~~~-d~~~~~~~~~~-i~~~~~~~~~~~~~~ 188 (479) .+-.||.+..++..+.++. | .+.+++|..+.|-. +..++-.+-++ =.+|.+. |.. T Consensus 193 ~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~---G~k-- 267 (695) T protein:vir:36 193 HDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---GTE-- 267 (695) T ss_pred hhccccceEEEEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe---ceE-- Confidence 9999999987776644331 1 15566666666521 10011000000 0011110 000 Q ss_pred EEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceE-EecCCCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 189 RVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFI-PFKNNEKCVSDLTFYKSLIDIYDN 267 (479) Q Consensus 189 ~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~s~~~~v~~lid~~~~ 267 (479) +| .-+...|+ . .+ +|-. .-..+..|.|....+.+-+++.++ T Consensus 268 ---IH-~SRL~~f~-------------------g--------~p-------lPd~LKp~y~~~GiSv~q~~~e~V~~~~r 309 (695) T protein:vir:36 268 ---VH-ATRLHTIV-------------------S--------RP-------VGDMLKPTYSFAGISMTQLAMPYIDNWLR 309 (695) T ss_pred ---Ee-eeeEEEec-------------------C--------CC-------chhhhhcccccCcccHHHHHHHHHHHHHH Confidence 00 00000000 0 00 1100 001235688888888888888887 Q ss_pred HHHHHHHHHHHhccceee------eecCCccchh---hHHHHhhcc-cceecCCCCcceeeecCCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 268 NISTLADNLDEIQEVIYV------LKEYPGTSLQ---EFIDNIRYY-KSIKVDGGGGVDKLEINIPVEAKKELLDRLEKN 337 (479) Q Consensus 268 ~~s~~~~~~~~~~~p~l~------~~g~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 337 (479) +.......+..++...+. +.+....... +.....+.. +++.++ +.+=+|.+.+.+...+...+...... T Consensus 310 T~~~v~~Li~~~~v~~lk~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~llD-k~~Eefeq~stslSGLddVi~qf~q~ 388 (695) T protein:vir:36 310 TRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLD-KATEEFFQFNTPLSGLDALQAQAQEQ 388 (695) T ss_pred HHhHHHHHHHhhhHHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEe-cCCcceEEEecccCCHHHHHHHHHHH Confidence 766666665444333221 1111110111 111122333 233444 33446777888889999999999999 Q ss_pred HHHHhCCCCCccccc---c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCC Q lcl|Aclame:pro 338 IIIFGQGVNPESQNT---G-DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHS 413 (479) Q Consensus 338 i~~~s~~~~~~~~~~---g-~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~ 413 (479) |...+.+|-.-..+. | |+||++=..-|...+. ...+..+...+++++.+|.. +..+..+. ++++.|++- T Consensus 389 VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~--s~Qe~~L~p~L~rl~~ii~r--S~~G~idp---di~~~fnPL 461 (695) T protein:vir:36 389 MSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQL--SLFGAVDP---SIKWQWNAL 461 (695) T ss_pred HHhhhcCchhhhhccCcccccccchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HhcCCCCC---cceEEeCCC Confidence 999999886554443 2 5788874444444433 33477889999998888754 33344332 588899999 Q ss_pred CCCCHHHHHHHHHH---------HhccCChHHHHHhC------CCCC--CHHHHHHHHHHHHHHHHhhhhccCCCCCCCc Q lcl|Aclame:pro 414 MIINEAEKIDMAAK---------STGIVSDETIVSNH------PWVE--DVNDELERLKKQEDTQKEYDDLIPNNQDGVI 476 (479) Q Consensus 414 ~p~d~~e~a~~~~k---------~~g~is~et~~~~l------~~~~--d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~ 476 (479) -..++.|.|+.-.| ..|+|+......+| ++.. |+..+=-.. +|.+.........+ .+.+ T Consensus 462 ~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~-~~~~~~~~~~~~~~---~~~~ 537 (695) T protein:vir:36 462 RELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVP-ADDDIDGVLTYVQR---LAEG 537 (695) T ss_pred CCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcC-ccchhhhhHhhhcC---cccc Confidence 99999999887544 24778777776664 2211 110000000 01110111000111 1122 Q ss_pred CCC Q lcl|Aclame:pro 477 DET 479 (479) Q Consensus 477 det 479 (479) +|| T Consensus 538 ~~~ 540 (695) T protein:vir:36 538 GDT 540 (695) T ss_pred ccc Confidence 222 No 210 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=96.98 E-value=0.00023 Score=40.58 Aligned_cols=384 Identities=9% Similarity=-0.041 Sum_probs=169.9 Q ss_pred HHHHHHHHhh-H-H-HHHHHHHHhccCCcccccccccccccccccccccCcce------eecchHHHHHHHHHhhhhccC Q lcl|Aclame:pro 27 VIEHYILKHR-P-E-KYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNK------AINNYHKLLVDQKVGYSVGNP 97 (479) Q Consensus 27 ~i~~~~~~~~-~-~-~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~r------i~~n~~~~iv~~~a~~l~g~~ 97 (479) .+ .+.-.|. . . -+-.+..+|+.+... ...................... +.++-....|+.+|+-+.+-| T Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vs~~~al~~~~v~~cv~~Ia~~iA~lp 78 (424) T protein:vir:45 1 ML-YCWWAHWLWPEGGRVLLDALFRSKSLE-NPSTPITGDAVDTDGLFRADVYVSPETAMKLAAVYSCIYVLSSSLAQMP 78 (424) T ss_pred Ce-eEeeeceecCcchhHHHHhhccccCCC-CCccccchhhhhhhccccCCceechHHhhccHHHHHHHHHHHHHHhhCc Confidence 10 0001111 0 0 112223334333211 0000000000000001111101 112223345777777777777 Q ss_pred eeec--CCc--hhH--HHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCC Q lcl|Aclame:pro 98 IVFN--ADD--DNL--TKLLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSK 165 (479) Q Consensus 98 ~~~~--~~~--~~~--~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~ 165 (479) +++- .++ +.. ..+...+. -|. ...+...+...++.+|.+|+.+-.+..|.+ .+..++|..+.+..+.. T Consensus 79 ~~v~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~i~~~~~ 158 (424) T protein:vir:45 79 LHVMRRHKGKVEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISLDCCMPWETTLMNTGG 158 (424) T ss_pred eEEEEecCCceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEEcCC Confidence 7641 111 111 12223332 132 234556678889999999999999888886 58888888877644322 Q ss_pred CCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEe Q lcl|Aclame:pro 166 RQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPF 245 (479) Q Consensus 166 ~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~ 245 (479) ++. |......+. ..+.++.+.+++.-. T Consensus 159 ---~~~-----y~~~~~~~~-----~~~~~~eVih~r~~~---------------------------------------- 185 (424) T protein:vir:45 159 ---RYT-----YGLYNEYGA-----FAISPDDMIHIRALG---------------------------------------- 185 (424) T ss_pred ---eEE-----EEEEecCce-----EEECcccEEEecCcC---------------------------------------- Confidence 111 111111111 113333333321100 Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh---HHHHh---------hcccceecCCCC Q lcl|Aclame:pro 246 KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---FIDNI---------RYYKSIKVDGGG 313 (479) Q Consensus 246 ~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~---~~~~~---------~~~~~~~~~~~~ 313 (479) .+...|.|.+..+...++.......-..+.+...+.|-.+++-......+. ....+ ..++++.++++. T Consensus 186 ~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~~n~g~~~vl~~g~ 265 (424) T protein:vir:45 186 NNQKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKSGLNKESWGWLKDQWQKASQALRRQENKTMLLPADL 265 (424) T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHhccccccCCceeEcCCCc Confidence 012347777776666666554444444455566667766665322222111 11111 123455666666 Q ss_pred cceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 GVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYL 393 (479) Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~ 393 (479) +++.+..+.....+.+..+..+..|...-+.|+.-.+.....+...++. .....+...|.-.++.+...+ T Consensus 266 ~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~eq----------~~~~f~~~tL~P~~~~ie~~l 335 (424) T protein:vir:45 266 DYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKATFSNISA----------QAIQFVRYTMMPWVTNWEQEL 335 (424) T ss_pred eEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHH----------HHHHHHHHHHHHHHHHHHHHH Confidence 6555554444445667777778888887787765544332222111111 111222333333333333322 Q ss_pred HhcCCCcc---ccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 394 KISGNKSY---DYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDVNDELERLKKQEDTQKEYDD 466 (479) Q Consensus 394 ~~~~~~~~---~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~~~El~~i~~E~~~~~~~~~ 466 (479) ...--... ....+++.....+-.|..+.++.+.++ .|+++...++++++.- ++-++-+.-.. -....-.. T Consensus 336 n~kLl~~~e~~~g~~i~fd~~~llr~d~~~r~~~~~~~~~~g~~T~NE~R~~~gl~pi~ggD~~~~~~n---~~~~~~~~ 412 (424) T protein:vir:45 336 NRRLFTRAELAAGYYVRFNLTGLLRGTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEGLDEMLVSVN---AANPAGDF 412 (424) T ss_pred HHhcCChhhhcCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccc---cccccccc Confidence 22111111 112345555666677899999999887 4799999999887542 22111111000 00001112 Q ss_pred ccCCCCCCCcCC Q lcl|Aclame:pro 467 LIPNNQDGVIDE 478 (479) Q Consensus 467 ~~~~~~~~~~de 478 (479) ..+..+++..|| T Consensus 413 ~~~~~~~~~~~~ 424 (424) T protein:vir:45 413 KPPKNDEGKTNE 424 (424) T ss_pred CCCCCCCCCCCC Confidence 223334444444 No 211 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=96.96 E-value=0.00024 Score=40.48 Aligned_cols=372 Identities=11% Similarity=0.012 Sum_probs=151.3 Q ss_pred HHHhccCCccccccccc-cccccccccc---ccCcceeecchHHHHHHHHHhhhhccCeeec--CCchhH-HHHHHH-HH Q lcl|Aclame:pro 44 EEYYYGNTDVNNKRRYY-LLDGAKVDDF---TKVNNKAINNYHKLLVDQKVGYSVGNPIVFN--ADDDNL-TKLLND-LL 115 (479) Q Consensus 44 ~~yy~g~~~~~~~~~~~-~~~~~~~~~~---~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~--~~~~~~-~~~~~~-~~ 115 (479) .++|++........... ..+.+..... .....-+.+.=.-..|+.+++-+..-|+++- ..+... ...+.. +. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Al~~~~V~~cv~~ia~~iA~lp~~~~~~~~~~~~~~~~~~~lL~ 80 (417) T protein:vir:38 1 MKLFRGLATEVDPHWADHLLDSGVIPSFRGGYLGISALRNSDVLTAVSIVSGDVSRFPLVITDSSTDEVIDLANIEYLMN 80 (417) T ss_pred CccccccccCCCccchhhhcccccccccCCceechhhcccHHHHHHHHHHHHhhccCeeEEEEcCCcceeccchHHHHHh Confidence 33344433221111000 0000000000 0000000111122357777777777777652 111111 111112 21 Q ss_pred h--cC---HHHHHHHHHHHHHhCCeEEEEEEeCCCC-ceE-EEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEE Q lcl|Aclame:pro 116 G--EE---FDDTITELYLNASNKGVEWLHPYINRKG-EFK-YVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIK 188 (479) Q Consensus 116 ~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~-~~~-i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~ 188 (479) . |. ...+...+...++.+|.+|+.+..+..| .+. +.+++|..+.+..++.. ++. |.+...++. T Consensus 81 ~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~--~~~-----y~~~~~~~~--- 150 (417) T protein:vir:38 81 TKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPD--NII-----YRFTPYNSS--- 150 (417) T ss_pred cccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCC--eEE-----EEEEEcCCc--- Confidence 1 32 3345566788899999999999988764 343 66788888876544321 211 222212221 Q ss_pred EEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHH Q lcl|Aclame:pro 189 RVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNN 268 (479) Q Consensus 189 ~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~ 268 (479) ...++..+.+.+++.- + .+...|.|.+..+...+...... T Consensus 151 ~~~~~~~~dviH~r~~------------------------------------~----~d~~~G~s~l~~~~~~i~~~~~~ 190 (417) T protein:vir:38 151 MQKVCGFEDVIHWKFF------------------------------------S----YDTIMGRSPLLSLGDEIGLQESG 190 (417) T ss_pred EEEEecCcceEEecCC------------------------------------C----CCCccccCHHHHHHHHHHHHHHH Confidence 1112223333332110 0 01224777777666666555555 Q ss_pred HHHHHHHHHHhccceeeeecCCccchhh---HHHHh-------hcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 269 ISTLADNLDEIQEVIYVLKEYPGTSLQE---FIDNI-------RYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNI 338 (479) Q Consensus 269 ~s~~~~~~~~~~~p~l~~~g~~~~~~~~---~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 338 (479) .......+...+.|-.++.-......+. ....+ ..++.+.++++.+++.+........+.+..+.....| T Consensus 191 ~~~~~~~f~ng~~p~~il~~~~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~I 270 (417) T protein:vir:38 191 VSTLQKFFKSGLKGSIIKAKESRLSAEARQKIREDFERAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQI 270 (417) T ss_pred HHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHHHHHHhcccccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHH Confidence 5555555566666765554322111111 11111 1234555665555544443333334556666667777 Q ss_pred HHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCH Q lcl|Aclame:pro 339 IIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINE 418 (479) Q Consensus 339 ~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~ 418 (479) ...-++|+.-.+..+ ++..++. .....+...|.-.++.|...+...--.........+.|+... .+. T Consensus 271 a~~fgVPp~~lg~~~--~~s~~e~----------~~~~~~~~tl~P~~~~ie~~l~~~Ll~~~~~~~~~~~fd~~~-l~~ 337 (417) T protein:vir:38 271 AKALRVPAYRLAQNS--PNQSVKQ----------LADDYIRNDLPFYFEPITSEFELKLLDDAQRHQYCIGFDTKS-VNG 337 (417) T ss_pred HHHhCCCHHHhCCCC--cchhHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhcChhhcccceEEechhh-hhH Confidence 777677765543221 2221111 111122333433333333322221111111223456664221 122 Q ss_pred HHHHHHHHHH--hccCChHHHHHhCCC--CCCHHH----------HHHHHHHHHHHHHhh-hhcc-CCCCCCCcCCC Q lcl|Aclame:pro 419 AEKIDMAAKS--TGIVSDETIVSNHPW--VEDVND----------ELERLKKQEDTQKEY-DDLI-PNNQDGVIDET 479 (479) Q Consensus 419 ~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~----------El~~i~~E~~~~~~~-~~~~-~~~~~~~~det 479 (479) ...++ +.++ .|+++.-.++++++. +++... -++...+++...... .... ..+.++.++++ T Consensus 338 ~~~~~-~~~~~~~G~~T~NE~R~~~gl~pi~~g~~d~~~~~~n~~~~d~~~~~~~~~~~~~kgg~~~~~~~~~~~~~ 413 (417) T protein:vir:38 338 LPIAD-VNTAVNGGLWTGNEGRAELGKKPLKDPNMDRIQSTLNTVFLDQKEAYQAEHAAELKGGDTNAKGNQNGSGT 413 (417) T ss_pred HHHHH-HHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeecccccccccccccccccccccCCCCCCCCCCCcCCCC Confidence 22222 2222 689999999988754 222211 112221211111100 0000 01111111111 No 212 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=96.94 E-value=0.00024 Score=40.38 Aligned_cols=380 Identities=9% Similarity=-0.059 Sum_probs=163.1 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeec Q lcl|Aclame:pro 22 INLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFN 101 (479) Q Consensus 22 ~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~ 101 (479) .++.+.............-.......-+..... +... ....-+.+.-....|+.+++-+..-|+.+- T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~s~~----------~~~v---t~~~al~~~~v~~~v~~ia~~iA~lp~~~~ 67 (419) T protein:vir:14 1 MFFSRQLLSNLGQTQMSAGGWVSALLGSSRSDS----------GQVV---TPASALALTVLQNCVTLLAESIAQLPIELY 67 (419) T ss_pred CcccccccccccccccCcchhhHHhhcCCCccC----------Cccc---chHHhhccHHHHHHHHHHHHhhccCceEEE Confidence 000000000000000000000011111110000 0000 000012233345567777777777777642 Q ss_pred ---CCch-h--HHHHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCc Q lcl|Aclame:pro 102 ---ADDD-N--LTKLLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRE 169 (479) Q Consensus 102 ---~~~~-~--~~~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~ 169 (479) .+.. . ...+...+. -| .-..+...++...+.+|.+|+.+..+.+|.+ .+..++|..+.+..+... . T Consensus 68 ~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~~~~--~ 145 (419) T protein:vir:14 68 ERSGEDRKPATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRGSDL--K 145 (419) T ss_pred EecCCccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCc--e Confidence 1111 1 111223232 23 2334556678889999999999999988886 488899988887665431 1 Q ss_pred eEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCC Q lcl|Aclame:pro 170 LVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE 249 (479) Q Consensus 170 ~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~ 249 (479) + +|.+...++ +..+.+.++. ..+ .+.. T Consensus 146 ~-----~y~~~~~~~--------~~~~~i~h~~------------------------------------~~~----~dg~ 172 (419) T protein:vir:14 146 P-----VYRVRGSDP--------MPQRLVHHVR------------------------------------WMS----INGY 172 (419) T ss_pred E-----EEEEccCcc--------cchhheeEec------------------------------------CcC----CCCc Confidence 1 111110000 0001111100 000 0123 Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC--C-ccchhhHHHHh------------hcccceecCCCCc Q lcl|Aclame:pro 250 KCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY--P-GTSLQEFIDNI------------RYYKSIKVDGGGG 314 (479) Q Consensus 250 ~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~--~-~~~~~~~~~~~------------~~~~~~~~~~~~~ 314 (479) .|.|.+..+...++..........+.+...+.|-.+++.. . ....++....+ ..++++.++++.+ T Consensus 173 ~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~ 252 (419) T protein:vir:14 173 TGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMT 252 (419) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCce Confidence 5778777777777666555555555566667776555422 1 11112221111 1234566666656 Q ss_pred ceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 VDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLK 394 (479) Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 394 (479) ++.+........+.+..+...+.|+..-++|+.-.+.....+...++..... .+...|.-.++.|...+. T Consensus 253 ~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~t~s~~E~~~~~----------f~~~~L~P~~~~ie~~l~ 322 (419) T protein:vir:14 253 FRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQ----------FVIYTLLPWVKRHEQAKT 322 (419) T ss_pred EEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHH----------HHHHHHHHHHHHHHHHHh Confidence 5555544444456666777788888887887654443222222222221111 222223222222222222 Q ss_pred hcC--CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHHHHHHHHHHHHHHHh-hhhc Q lcl|Aclame:pro 395 ISG--NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVNDELERLKKQEDTQKE-YDDL 467 (479) Q Consensus 395 ~~~--~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~El~~i~~E~~~~~~-~~~~ 467 (479) ..- ........+++.+...+..|..+.++++.++ .|+++.-.++++++.-. +-+.-+-...--...... .... T Consensus 323 ~kll~~~~~~~~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~ 402 (419) T protein:vir:14 323 RDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQQLPVG 402 (419) T ss_pred hhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccccccccccccccCC Confidence 111 1111122345555566677899999999887 68999999998875421 111101000000000000 0000 Q ss_pred cCCCCCCCcCCC Q lcl|Aclame:pro 468 IPNNQDGVIDET 479 (479) Q Consensus 468 ~~~~~~~~~det 479 (479) ......+..+|. T Consensus 403 ~~~~~~~~~~e~ 414 (419) T protein:vir:14 403 KSEPTKAAIDEI 414 (419) T ss_pred CCCCccccccch Confidence 000111111111 No 213 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=96.92 E-value=0.00026 Score=40.26 Aligned_cols=404 Identities=9% Similarity=0.046 Sum_probs=178.9 Q ss_pred CCCcccCcHHHHHH----HHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcce Q lcl|Aclame:pro 1 MLNIYISETDLIKV----QLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNK 76 (479) Q Consensus 1 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~r 76 (479) -+.-| +...+.. +...-++.....+.. -+.--+. -++.+ -+|.|-.=+-|.-..-+ T Consensus 59 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l-~~~~~~~F~Gy~~la~l--------------- 118 (694) T protein:vir:10 59 VAEPS--PSLRLARQFEVDVSNYTPRERRAASY-ALDFNGT-SMDAL-SFVTSSGFPGFPTLVLL--------------- 118 (694) T ss_pred cCCCC--cchhhhhhccccccCCCccccchhhh-hhccCcc-cccch-hhhhccCcchHHHHHHH--------------- Confidence 11111 1111100 000111110000000 0000000 01222 23333211100000000 Q ss_pred eecchHHHHHHHHHhhhhccCeeecC---------------------CchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCe Q lcl|Aclame:pro 77 AINNYHKLLVDQKVGYSVGNPIVFNA---------------------DDDNLTKLLNDLLGEEFDDTITELYLNASNKGV 135 (479) Q Consensus 77 i~~n~~~~iv~~~a~~l~g~~~~~~~---------------------~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~ 135 (479) ..++-++..+..++..+..+-..+++ +.+.+..+-..+.+=++...+.++++.+-.||. T Consensus 119 aQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik~aRlfGG 198 (694) T protein:vir:10 119 AQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGR 198 (694) T ss_pred hhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc Confidence 01233334444555444433322211 113333444455555777888999999999999 Q ss_pred EEEEEEeCCCCc-----------------e-EEEEEccceeEEEE-cCCCCCceEEE-EEEEeeecccCceEEEEEEEeC Q lcl|Aclame:pro 136 EWLHPYINRKGE-----------------F-KYVIIPAEEAIPIW-DSKRQRELVAF-IRFYYIEDIDGNKIKRVEYYTE 195 (479) Q Consensus 136 ~~~~v~~d~~~~-----------------~-~i~~~~p~~~~~~~-d~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~y~~ 195 (479) +..++.++.++. + .+.+++|..+.|-. +..++-.+-++ =.+|.+. |.. +| . T Consensus 199 a~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~---G~~-----IH-~ 269 (694) T protein:vir:10 199 AHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---GTE-----VH-A 269 (694) T ss_pred eEEEEEeecCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe---ceE-----Ee-e Confidence 987776644331 1 15566666666521 10011000000 0011110 000 00 0 Q ss_pred CcEEEEEEcCCccccccccccccccccccccccccccccccccccceE-EecCCCCCCchHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 196 NDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFI-PFKNNEKCVSDLTFYKSLIDIYDNNISTLAD 274 (479) Q Consensus 196 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~ 274 (479) -+...|+ . .+ +|-. .-..+..|.|....+.+-+++.+++...... T Consensus 270 SRL~~f~-------------------g--------~p-------lPd~LKp~y~~~G~Sv~q~~~e~V~~~~rT~~~v~~ 315 (694) T protein:vir:10 270 TRLHTIV-------------------S--------RP-------VGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSD 315 (694) T ss_pred eeEEEec-------------------C--------CC-------chhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHH Confidence 0000000 0 00 1100 0012356889888888888888887666666 Q ss_pred HHHHhccceee------eecCCccchh---hHHHHhhcc-cceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 275 NLDEIQEVIYV------LKEYPGTSLQ---EFIDNIRYY-KSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQG 344 (479) Q Consensus 275 ~~~~~~~p~l~------~~g~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~ 344 (479) .+..++...+. +.+....... +.....+.. +++.++ +.+=+|.+.+.+...+...+......|...+.+ T Consensus 316 Li~~~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~llD-k~~Eefeq~stslSGLddVi~qf~q~VAgaa~I 394 (694) T protein:vir:10 316 IVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLD-KATEEFFQFNTPLSGLDALQAQAQEQMSAVSHI 394 (694) T ss_pred HHHhhhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEe-cCCcceEEEecccCCHHHHHHHHHHHHHhhhcC Confidence 66544433221 1110000111 111122333 233444 334467778888899999999999999999988 Q ss_pred CCCccccc---c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHH Q lcl|Aclame:pro 345 VNPESQNT---G-DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAE 420 (479) Q Consensus 345 ~~~~~~~~---g-~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e 420 (479) |-.-..+. | |+||++=..-|...+. ...+..+...+++++.+|.. +..+..+. ++.+.|++--..++.| T Consensus 395 PltkLfGqSPkGlNATGE~D~rnYYD~I~--s~Qe~~L~p~L~rl~~ii~r--S~~G~idp---~i~~~fnPL~qmtd~E 467 (694) T protein:vir:10 395 PLIKLLGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQL--SLFGAVDP---SIKWQWNALRELDDLE 467 (694) T ss_pred chhhhhccCcccccccchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HhcCCCCC---cceEEeCCCCCcCHHH Confidence 86554443 2 5788874444444433 33477889999998888754 33344332 5888999999999999 Q ss_pred HHHHHHH---------HhccCChHHHHHhC------CCCC--CHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 421 KIDMAAK---------STGIVSDETIVSNH------PWVE--DVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 421 ~a~~~~k---------~~g~is~et~~~~l------~~~~--d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) .|+.-.| ..|+|+......+| ++.. |+..+=-.. +|.+.........+ .+.++|| T Consensus 468 kAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~-~~~~~~~~~~~~~~---~~~~~~~ 539 (694) T protein:vir:10 468 VAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVP-ADDDIDGVLTYVQR---LAEGGDT 539 (694) T ss_pred HHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcC-ccchhhhhHhhhcC---ccccccc Confidence 9886544 24778777776664 2211 111000000 01110111000011 1112222 No 214 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=96.87 E-value=0.00029 Score=40.00 Aligned_cols=380 Identities=11% Similarity=0.028 Sum_probs=169.1 Q ss_pred HHHHhhHHHHHHHHHHhccCCcccc------ccccccc-c-ccccccccc---CcceeecchHHHHHHHHHhhhhccCee Q lcl|Aclame:pro 31 YILKHRPEKYKQGEEYYYGNTDVNN------KRRYYLL-D-GAKVDDFTK---VNNKAINNYHKLLVDQKVGYSVGNPIV 99 (479) Q Consensus 31 ~~~~~~~~~~~~~~~yy~g~~~~~~------~~~~~~~-~-~~~~~~~~~---~~~ri~~n~~~~iv~~~a~~l~g~~~~ 99 (479) ...+.-...+.+++..+....+.-. .+..... . ......... ...-+.++-....|+.+++-+..-|+. T Consensus 1 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~a~~~~aV~~~v~~Ia~~ia~lp~~ 80 (432) T protein:vir:97 1 MPDEKKLGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAVAAMPLM 80 (432) T ss_pred CCCcccCchhhhhHhhcCCccccccccccccccCchhhhhhcccccccCcccchHhhhcchHHHHHHHHHHHhhccCceE Confidence 1111112233444444432211000 0000000 0 000000000 000011222334566666666666765 Q ss_pred ec---CCc--hhH-HHHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCC Q lcl|Aclame:pro 100 FN---ADD--DNL-TKLLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQ 167 (479) Q Consensus 100 ~~---~~~--~~~-~~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~ 167 (479) +- .+. +.. ..+...+. -| .-..+...+....+.+|.+|+.+..+ +|++ .+..++|..+.++.+... T Consensus 81 ~y~~~~~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~p~~v~v~~~~~g- 158 (432) T protein:vir:97 81 MYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKG- 158 (432) T ss_pred EEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCcceEEEEcCCC- Confidence 41 111 111 12233332 13 23355667788899999999998876 4665 577899999988876542 Q ss_pred CceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecC Q lcl|Aclame:pro 168 RELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN 247 (479) Q Consensus 168 ~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n 247 (479) .+ +|.....+|.. ..+..+.+.+++.- + .+ T Consensus 159 -~~-----~y~~~~~~g~~----~~~~~~~iih~r~~------------------------------------~----~d 188 (432) T protein:vir:97 159 -NT-----AYRYRRTDGQM----IDIPRQQIWKIMGY------------------------------------S----LD 188 (432) T ss_pred -cE-----EEEEEecCceE----EEEccccEEEecCc------------------------------------C----CC Confidence 21 12222233321 12333333332110 0 01 Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHH--------hhcccceecCCCCcceeee Q lcl|Aclame:pro 248 NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDN--------IRYYKSIKVDGGGGVDKLE 319 (479) Q Consensus 248 ~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 319 (479) ...|.|-++.+...++..........+.+...+.|-.++..... ..++.... ...++++.++++.+.+.+. T Consensus 189 g~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~-l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~ 267 (432) T protein:vir:97 189 GENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRF-LTDDQYDSFSKKVSGSVEAGRAPLLEGGMDVKSLG 267 (432) T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecCCC-CCHHHHHHHHHHHhhhhcCCCceecCCCceEEEcc Confidence 23477777766665555444444444445556666555543221 12222111 1234566677666666665 Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc--cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 320 INIPVEAKKELLDRLEKNIIIFGQGVNPESQNT--GD-KSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS 396 (479) Q Consensus 320 ~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~--g~-~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 396 (479) .+.....+.+..+.....|+..-++|+.-.+.. +. ..+..++..... .+...|.-.++.+...+... T Consensus 268 ~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e~~~~~----------f~~~tl~P~~~~ie~~ln~k 337 (432) T protein:vir:97 268 LNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLG----------FLTMTLSPWLRRIEQSIALN 337 (432) T ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHHHHHHH----------HHHHHHHHHHHHHHHHHhhh Confidence 555555677777888888888878886554432 11 112333221111 12223333333332222211 Q ss_pred C--CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHH------HHHHHHHHHHHhh Q lcl|Aclame:pro 397 G--NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDVNDEL------ERLKKQEDTQKEY 464 (479) Q Consensus 397 ~--~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~~~El------~~i~~E~~~~~~~ 464 (479) - ........+++.+...+..|..+.++++.++ .|+++.-.++++++.- ++-..-+ .-+.. ... T Consensus 338 Ll~~~e~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~--~~~--- 412 (432) T protein:vir:97 338 LLTPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDS--IGL--- 412 (432) T ss_pred ccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceEeecccccchhh--hcc--- Confidence 1 1111112345555666778999999998886 5789999998887542 2100000 00100 000 Q ss_pred hhccCCCCCCCcCCC Q lcl|Aclame:pro 465 DDLIPNNQDGVIDET 479 (479) Q Consensus 465 ~~~~~~~~~~~~det 479 (479) +..+...++.+++. T Consensus 413 -~~~~~~~~~~~~~~ 426 (432) T protein:vir:97 413 -QASPEPASGLGNQQ 426 (432) T ss_pred -cCCCCCCCCCCCcc Confidence 00111111111111 No 215 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=96.84 E-value=0.0003 Score=39.86 Aligned_cols=337 Identities=12% Similarity=0.028 Sum_probs=143.9 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcce--eecchHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNK--AINNYHKLLV 86 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~r--i~~n~~~~iv 86 (479) |-.+. . + ++..............+. +........+.+ +..+=.-..| T Consensus 1 M~~~~----------~------f-~~r~~~~~~~~~~~~~~~--------------~~~~~~~~v~~~~al~~~av~~cv 49 (359) T protein:vir:10 1 MSILN----------P------F-ERRSSITPNNYYPFMVQN--------------GSIVPNSLVDATEALKNSDLYAVT 49 (359) T ss_pred Ccccc----------h------h-hccccCCCCcchhhhhcc--------------ccccCCcccCHHHhhcchHHHHHH Confidence 00000 0 0 000000000000000000 000000000000 0111122356 Q ss_pred HHHHhhhhccCeeecCCchhHHHHHHHHHhc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEE Q lcl|Aclame:pro 87 DQKVGYSVGNPIVFNADDDNLTKLLNDLLGE---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIW 162 (479) Q Consensus 87 ~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~ 162 (479) +.+++-+.+-|+. ++.....++.. -| .-..+...+....+.+|.+|+.+..+..|.+ .+..++|..+.+.. T Consensus 50 ~~ia~~ia~~p~~---~~~~~~~L~~~--PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~ 124 (359) T protein:vir:10 50 SLISSDIAGTRFI---GNQVFTSVLNN--PSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDL 124 (359) T ss_pred HHHHHhhhcCccc---cchHHHHHhhc--ccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEE Confidence 6666666666763 22222222221 12 2234446677788889999999999888875 47788888887655 Q ss_pred cCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccce Q lcl|Aclame:pro 163 DSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF 242 (479) Q Consensus 163 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 242 (479) ++. . ++ |.+....+. ....+.++.+.+++.-.. ..+++ T Consensus 125 ~~~---~----~~-y~~~~~~~~---~~~~~~~~evih~~~~~~--------------------------~~~~~----- 162 (359) T protein:vir:10 125 TDD---T----LT-YEVNQFDDY---PSAKYNASEMIHVKIMAY--------------------------GVDTL----- 162 (359) T ss_pred cCC---e----EE-EEEEecCCc---eEEEEcccceEEeccCCC--------------------------CCCcc----- Confidence 542 1 11 122111111 112233444444322100 00000 Q ss_pred EEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh----HHHHh-------hcccceecCC Q lcl|Aclame:pro 243 IPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE----FIDNI-------RYYKSIKVDG 311 (479) Q Consensus 243 v~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~----~~~~~-------~~~~~~~~~~ 311 (479) +...|.|.++.+...+...........+.+...+.|-.+++-..+...++ ....+ ..++++.+++ T Consensus 163 ----dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~~~~n~g~~~vl~~ 238 (359) T protein:vir:10 163 ----HNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSEAKDSIRKEFEKANGGNNSGRVMVLDQ 238 (359) T ss_pred ----CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCCceecCC Confidence 11247787777777777666655556666666666766665322211122 11111 1234566666 Q ss_pred CCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccc--cccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG--DKSGVALKFLYSLLD-LKCSKTEKKFKKAIRELLWF 388 (479) Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g--~~Sg~Ai~~~~~~l~-~k~~~~~~~~~~~l~~~~~l 388 (479) +.+.+.+........+.+..+.....|...-+.|+.-.+..+ +.+...++..+.... ..+.-....+...+. T Consensus 239 g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~~~~~~l~~~l~p~~~~l~~~l~----- 313 (359) T protein:vir:10 239 SADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKDLYVNALNRFIEPLISELRIKCD----- 313 (359) T ss_pred CcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh----- Confidence 656655554333444667777788888888888876554433 234333333222111 111111111111111 Q ss_pred HHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHH Q lcl|Aclame:pro 389 VCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDEL 451 (479) Q Consensus 389 i~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~~El 451 (479) .- +.+......--|.......+.++ +|+++.-.++++++.-. -| T Consensus 314 --~~-------------~~~~~~~~~~~d~~~~~~~~~~~~~~G~~t~NE~R~~l~~~p----v~ 359 (359) T protein:vir:10 314 --SS-------------IGVDMSPITDYSNSVFKADILNWVKEGIIEPTEAKTLLESKG----II 359 (359) T ss_pred --hh-------------hcccchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC----CC Confidence 00 00111111111222223333343 57999988888763211 01 No 216 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=96.76 E-value=0.00036 Score=39.48 Aligned_cols=374 Identities=9% Similarity=-0.063 Sum_probs=164.7 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeec Q lcl|Aclame:pro 22 INLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFN 101 (479) Q Consensus 22 ~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~ 101 (479) .++.+.....+.......-..+..+.-|.. . ..+... .+..-+.++-....|+.+++-+.+-|+.+- T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-s---------~~~~~v---~~~~al~~~~v~~cv~~ia~~ia~lp~~~~ 67 (419) T protein:vir:80 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSAR-S---------EAGQVV---TPASALSLTVLQNCVTLLAESIAQLPVELY 67 (419) T ss_pred CCcccccccccCcCCCCcchhhHHhhcccc-c---------ccCccc---ChHHhhccHHHHHHHHHHHHhhccCceEEE Confidence 000000000000000000000000000000 0 000000 000112234445567777777777787641 Q ss_pred ---CCch-h--HHHHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCceE-EEEEccceeEEEEcCCCCCc Q lcl|Aclame:pro 102 ---ADDD-N--LTKLLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRKGEFK-YVIIPAEEAIPIWDSKRQRE 169 (479) Q Consensus 102 ---~~~~-~--~~~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~-i~~~~p~~~~~~~d~~~~~~ 169 (479) .+.. . ...+...+. -| .-..+...++...+.+|.+|+.+..+.+|.+. +..++|..+.+..+... . T Consensus 68 ~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~~~~~--~ 145 (419) T protein:vir:80 68 ERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL--K 145 (419) T ss_pred EecCCCcccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCc--e Confidence 1211 1 111222232 13 23355566788899999999999999888864 88899988877655431 1 Q ss_pred eEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCC Q lcl|Aclame:pro 170 LVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE 249 (479) Q Consensus 170 ~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~ 249 (479) + +|... +.. .+..+.+.++. ..| .+.. T Consensus 146 ~-----~y~~~---~~~-----~~~~~~i~h~~------------------------------------~~~----~d~~ 172 (419) T protein:vir:80 146 P-----MYRVA---GAD-----PLPQRLVHHVR------------------------------------WMS----INGY 172 (419) T ss_pred E-----EEEEc---Ccc-----ccchhheEEec------------------------------------CCC----CCCc Confidence 1 11111 100 01111111110 000 0123 Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeee--cC-CccchhhHHHH----h--------hcccceecCCCCc Q lcl|Aclame:pro 250 KCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLK--EY-PGTSLQEFIDN----I--------RYYKSIKVDGGGG 314 (479) Q Consensus 250 ~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~--g~-~~~~~~~~~~~----~--------~~~~~~~~~~~~~ 314 (479) .|.|.+..+...++..........+.+...+.|-.+++ +. .....++.... + ..++++.++++.+ T Consensus 173 ~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~ 252 (419) T protein:vir:80 173 TGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMK 252 (419) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCce Confidence 57777777766666555554444455566666765554 21 11111221111 1 1244666776666 Q ss_pred ceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 VDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLK 394 (479) Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 394 (479) ++.+..+.....+.+..+...+.|+..-++|+.-.+.....+...++... ...+...|.-.++.+...+. T Consensus 253 ~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~~~~t~~n~e~~~----------~~f~~~~l~P~~~~ie~~l~ 322 (419) T protein:vir:80 253 FKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQS----------LQFVIYTLLPWVKRHEQAKT 322 (419) T ss_pred EEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHH----------HHHHHHHHHHHHHHHHHHHh Confidence 66555444455577777788888888878886554433222222111111 11122222222222222222 Q ss_pred hcC--CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHHHHHHHHHHHHHHHhhhhcc Q lcl|Aclame:pro 395 ISG--NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVNDELERLKKQEDTQKEYDDLI 468 (479) Q Consensus 395 ~~~--~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~El~~i~~E~~~~~~~~~~~ 468 (479) ..- ........+++.+...+..|..+.++.+.++ .|+++.-.++++++.-. +-+ ++ .+-. ........ T Consensus 323 ~kll~~~~~~~~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~gGD-~~-~~~~----n~~~~~~~ 396 (419) T protein:vir:80 323 RDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD-IY-LSPM----NMVDASKP 396 (419) T ss_pred hhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc-ee-eecc----cccccccc Confidence 111 0111122345555666777899999988886 68999999998875421 111 11 0000 00000111 Q ss_pred CCCCCCCcCCC Q lcl|Aclame:pro 469 PNNQDGVIDET 479 (479) Q Consensus 469 ~~~~~~~~det 479 (479) ...+.+..++| T Consensus 397 ~~~~~~~~~~~ 407 (419) T protein:vir:80 397 QPIPMGKTEPT 407 (419) T ss_pred ccccCCCCCch Confidence 11222333333 No 217 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=96.73 E-value=0.00038 Score=39.37 Aligned_cols=370 Identities=10% Similarity=-0.015 Sum_probs=167.0 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQ 88 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~ 88 (479) |..+.. +...-.+...........++-+....... ... ...-...+.....|+. T Consensus 1 Mg~f~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~v~~~i~~ 54 (406) T protein:vir:95 1 MGLFDR-------------WRRTKRKSKIRADTGYVGLFMSGEDVSFL----------VPG---YVRLSDNPEVRMAVHK 54 (406) T ss_pred Ccchhh-------------hccccccccccccchhhhhhccCcccCcc----------ccC---HHHHhhcHHHHHHHHH Confidence 222211 10000000000000011111111000000 000 0000123566777888 Q ss_pred HHhhhhccCeeec--CCc---hhHHHHHHHHHh--c---CHHHHHHHHHHHHHhCCeEE--EEEEeCCCCce-EEEEEcc Q lcl|Aclame:pro 89 KVGYSVGNPIVFN--ADD---DNLTKLLNDLLG--E---EFDDTITELYLNASNKGVEW--LHPYINRKGEF-KYVIIPA 155 (479) Q Consensus 89 ~a~~l~g~~~~~~--~~~---~~~~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~--~~v~~d~~~~~-~i~~~~p 155 (479) +|+-+..-|+.+- .++ .....+...+.. | ....+...++...+.+|.++ +.+-.+..|.+ .+..++| T Consensus 55 ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~ 134 (406) T protein:vir:95 55 IADLISSMTIYLMQNTEDGDIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTP 134 (406) T ss_pred HHHhhccCceEEEEecCCcceeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcC Confidence 8888888887751 111 111122333321 3 24456677788888887654 44555666766 4778889 Q ss_pred ceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccc Q lcl|Aclame:pro 156 EEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQ 235 (479) Q Consensus 156 ~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (479) ..+.++.+... .++ . .++ ..|.++.+.+++... + T Consensus 135 ~~v~~~~~~~~-------~~~-~---~~~------~~~~~~evih~~~~~-----------------------------~ 168 (406) T protein:vir:95 135 SKVNFLDTPDG-------YQV-L---YGG------QTFNYDEVLHFIYNP-----------------------------D 168 (406) T ss_pred ceeEEEEcCCe-------EEE-E---ecc------EEEchhHEEEeeccC-----------------------------C Confidence 88877665431 110 0 111 113333333322110 0 Q ss_pred cccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchh---hHHHHh--------hcc Q lcl|Aclame:pro 236 GWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQ---EFIDNI--------RYY 304 (479) Q Consensus 236 ~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~---~~~~~~--------~~~ 304 (479) ++ +...|.|.+..+...++............+...+.|-.++........+ .....+ ..+ T Consensus 169 ~~---------~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~~~~~~~~~~~~g~~n~~ 239 (406) T protein:vir:95 169 PE---------RPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAATAELSSEEGRNAVFKKYLQATEAG 239 (406) T ss_pred CC---------CCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHHHhccccccC Confidence 00 0124778788777777777666666666667777776665432222211 111111 112 Q ss_pred cceecCCCC-cceeee-cCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 305 KSIKVDGGG-GVDKLE-INIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAI 382 (479) Q Consensus 305 ~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l 382 (479) +.+.+..++ ..+-++ .......+.+..+.....|+..-++|+.-.+...+.+... ...+...| T Consensus 240 ~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~---------------~~~~~~~l 304 (406) T protein:vir:95 240 QPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIGEFNRDEY---------------NNFINSTI 304 (406) T ss_pred CceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCchHHHH---------------HHHHHHHH Confidence 233344333 232222 2333445667777777888777777764432222211111 11334444 Q ss_pred HHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCH--H-----HHHHH Q lcl|Aclame:pro 383 RELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDV--N-----DELER 453 (479) Q Consensus 383 ~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~--~-----~El~~ 453 (479) .-+++.|...+...--.+ ....+++.++..+..|..+.++.+.++ .|+++...++++++.-..+ + .-+.. T Consensus 305 ~P~~~~ie~~l~~~l~~~-~~~~~~fd~~~l~~~d~~~~~~~~~~l~~~G~~t~NE~R~~~gl~p~~~gd~~~~~~n~~~ 383 (406) T protein:vir:95 305 LPIAKGIEQELTRKLLIS-PDLYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEVRDWLGLSPKEGLSELVILENYIP 383 (406) T ss_pred HHHHHHHHHHHHHhcCCC-CCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccCccc Confidence 444444444333211111 123456666777778899999988876 5799999999988653211 1 00111 Q ss_pred HHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 454 LKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 454 i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) +++ .......-+.+.++.++++ T Consensus 384 ~~~----~~~~~~~k~g~~~~~~~~~ 405 (406) T protein:vir:95 384 LDK----IGDQSKLKGGDNSGADGQT 405 (406) T ss_pred hhh----cccccccCCCCCCCCCCCC Confidence 110 0111112222333444444 No 218 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=96.67 E-value=0.00042 Score=39.08 Aligned_cols=363 Identities=8% Similarity=-0.014 Sum_probs=152.9 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhH---HHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRP---EKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLL 85 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~i 85 (479) |..+.. ......+.+. ..-.....++.|.-.. .......-+...-.... T Consensus 1 Mg~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~v~~~~al~~~~v~~~ 52 (385) T protein:vir:10 1 MGLLTP-------------RNFNKRKAKNMVYPSNPAFFTTTVGGMQL---------------SYVSALSALQNTNVYSV 52 (385) T ss_pred Cccccc-------------hhcccccccccccccchhhhhhhccccCc---------------cccCHHHhhccHHHHHH Confidence 111110 0000000000 0000001111110000 00000000122334557 Q ss_pred HHHHHhhhhccCeeecCCchhHHHHHHHHHhc---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEE Q lcl|Aclame:pro 86 VDQKVGYSVGNPIVFNADDDNLTKLLNDLLGE---EFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIW 162 (479) Q Consensus 86 v~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~ 162 (479) |+.+|+-+..-|+++. +.....+++ .-| ....+...+....+.+|.+|+.+..+. ..+..++|..+.+.. T Consensus 53 i~~ia~~ia~~p~~v~--~~~~~~ll~--~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~~---~~~~p~~~~~v~~~~ 125 (385) T protein:vir:10 53 INRIASDVASAHFKTE--NTATLNRLE--SPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLP 125 (385) T ss_pred HHHHHHHHhhCceeee--ccchhhhhh--cCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCc---eeEeecCCceEEEEE Confidence 8888888777888763 222222222 113 234555667788889999999987542 233334444443332 Q ss_pred cCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccce Q lcl|Aclame:pro 163 DSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF 242 (479) Q Consensus 163 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 242 (479) +.. ... |.+....+. ....+.++.+.+++.-. +.. T Consensus 126 ~~~---~~~-----~~~~~~~~~---~~~~~~~~eiihik~~~----------------------------~~~------ 160 (385) T protein:vir:10 126 GNM---GIV-----YTVLESNDR---PQMVLRQDQMLHFRLMP----------------------------DPQ------ 160 (385) T ss_pred cCC---ceE-----EEEEEcCCc---eEEEEccccEEEeccCC----------------------------CCc------ Confidence 221 111 111111111 01112233333322100 000 Q ss_pred EEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH----HHHh-------hcccceecCC Q lcl|Aclame:pro 243 IPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF----IDNI-------RYYKSIKVDG 311 (479) Q Consensus 243 v~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~----~~~~-------~~~~~~~~~~ 311 (479) .+...|.|.+..+...++..........+.+...+.|-.++.-......++. ...+ ..++++.+++ T Consensus 161 ---~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~ 237 (385) T protein:vir:10 161 ---YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPD 237 (385) T ss_pred ---ccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCCccccCC Confidence 0112477888887777777666665566666666677666553222211221 1111 1234555665 Q ss_pred CCcceeeecCCCHHH-HHHHHHHHHHHHHHHhCCCCCcccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 GGGVDKLEINIPVEA-KKELLDRLEKNIIIFGQGVNPESQN--TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWF 388 (479) Q Consensus 312 ~~~~~~~~~~~~~~~-~~~~~~~l~~~i~~~s~~~~~~~~~--~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~l 388 (479) +.+++.+........ +.+..+...+.|...-++|+.-.+. .++.++..++.... .. ...|.-.++. T Consensus 238 g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~-~~----------~~~l~P~~~~ 306 (385) T protein:vir:10 238 GFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA-TY----------LANLNSYVNP 306 (385) T ss_pred CceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHH-HH----------HHHHHHHHHH Confidence 555555544333333 2456677778888887887654432 23332222221111 11 1112222222 Q ss_pred HHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 389 VCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDD 466 (479) Q Consensus 389 i~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~ 466 (479) +...+...-. ...+++.+...+..|..+.++++.++ .|+++.-.+++.++...=+...+.... ... . T Consensus 307 ie~~l~~~l~----~~~~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~p~~~~~~~~------~~~-~ 375 (385) T protein:vir:10 307 IVDELRLKMN----APDLELDIKDMLDVDDSALINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFK------PLT-T 375 (385) T ss_pred HHHHHHHhhC----CceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccCCCCCcccc------Ccc-c Confidence 2221111100 12366666788888999999999887 579999888877643210111111110 000 0 Q ss_pred ccCCCCCCCcCC Q lcl|Aclame:pro 467 LIPNNQDGVIDE 478 (479) Q Consensus 467 ~~~~~~~~~~de 478 (479) .....+ .+|+ T Consensus 376 ~~~~g~--~~dn 385 (385) T protein:vir:10 376 QVKGGD--EGDN 385 (385) T ss_pred ccCCCC--CCCC Confidence 111111 1111 No 219 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=96.59 E-value=0.00049 Score=38.73 Aligned_cols=426 Identities=13% Similarity=0.086 Sum_probs=160.7 Q ss_pred CCCcccCc--------HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccc--ccc---- Q lcl|Aclame:pro 1 MLNIYISE--------TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLD--GAK---- 66 (479) Q Consensus 1 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~--~~~---- 66 (479) |++.+.+- +..|+..........-+..| ++. ...+..+.+--++++..-..+.....+ .+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 75 (563) T protein:vir:99 1 MADLFKQFRLGKDYGNNSTIAQVPIDEGLQANIKKI----EQD-NKEYQDLTKSLYGQQQAYAEPFIEMMDTNPEFRDKR 75 (563) T ss_pred ChhhhhhhhcccccccccccceeeccCChhhhHhhh----hcc-chhHHHHHhhhccCCCcchhhhHhhhcccccccccc Confidence 55444210 00111111001111111111 110 011222222222222221111110000 000 Q ss_pred --ccccc-cCc-c-ee-ecchHHHHHHHHHhhhhc-------------cCeee---cC--CchhHH--HHHHHHH----h Q lcl|Aclame:pro 67 --VDDFT-KVN-N-KA-INNYHKLLVDQKVGYSVG-------------NPIVF---NA--DDDNLT--KLLNDLL----G 116 (479) Q Consensus 67 --~~~~~-~~~-~-ri-~~n~~~~iv~~~a~~l~g-------------~~~~~---~~--~~~~~~--~~~~~~~----~ 116 (479) ..+.. .+. . .. ..++...+|++.+..+.. =++.+ +. ...+.. ..+..+. . T Consensus 76 ~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 155 (563) T protein:vir:99 76 SYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGK 155 (563) T ss_pred cCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCC Confidence 00000 000 0 00 123445555554443321 12221 11 111111 1122222 1 Q ss_pred c------CHHHHHHHHHHHHHhCCeEEEEEEe--CCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceE Q lcl|Aclame:pro 117 E------EFDDTITELYLNASNKGVEWLHPYI--NRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKI 187 (479) Q Consensus 117 n------~~~~~~~~~~~~~~~~G~~~~~v~~--d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~ 187 (479) + .+..+...++.+.+.+|.+|+.+.+ +..|++ .+..++|..+.+..+.... ......+++... ++.. T Consensus 156 ~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~-~~~~~~~y~~~~--~g~~- 231 (563) T protein:vir:99 156 DKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGK-IIKGGKRFVQVV--DKRV- 231 (563) T ss_pred CCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCCc-eeccceeEEEEe--CCce- Confidence 1 2445667788899999999887664 445665 5888999999887765421 111112222211 1111 Q ss_pred EEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 188 KRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDN 267 (479) Q Consensus 188 ~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~ 267 (479) ...+..+.+.+++... ..+. .....|.|.+..+...+..... T Consensus 232 --~~~~~~~evI~~~~~~---------------------------~~d~---------~~~~~G~Spi~~a~~~i~~~~~ 273 (563) T protein:vir:99 232 --VASFTSRELAMGIRNP---------------------------RTEL---------SSSGYGLSEVEIAMKEFIAYNN 273 (563) T ss_pred --eEEecCcceEEEeccC---------------------------CCCc---------ccCcccchHHHHHHHHHHHHHH Confidence 1112222222211100 0000 0113477877777777766655 Q ss_pred HHHHHHHHHHHhccceeee--ecCCccchh---hHHHHh--------hcccc-eecCCCCcceeeecCCCHHHHHHHHHH Q lcl|Aclame:pro 268 NISTLADNLDEIQEVIYVL--KEYPGTSLQ---EFIDNI--------RYYKS-IKVDGGGGVDKLEINIPVEAKKELLDR 333 (479) Q Consensus 268 ~~s~~~~~~~~~~~p~l~~--~g~~~~~~~---~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (479) +..-..+.+...+.|-.++ ++......+ .....+ ..+++ +.++++.+.+.++.+.....+.+..+. T Consensus 274 ~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~ 353 (563) T protein:vir:99 274 TESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNY 353 (563) T ss_pred HHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHH Confidence 5555556666666676444 342211111 111111 11222 445666555555555555667788888 Q ss_pred HHHHHHHHhCCCCCccccc--ccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceee Q lcl|Aclame:pro 334 LEKNIIIFGQGVNPESQNT--GDK----SGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQ 407 (479) Q Consensus 334 l~~~i~~~s~~~~~~~~~~--g~~----Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~ 407 (479) ..+.|...-++|+.-.+.. ++. .+..+.. +.+ .......+...|.-+++.+...+...-.... ...+. T Consensus 354 ~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~--sn~---e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~-~~~~~ 427 (563) T protein:vir:99 354 LINIISALYGIDPAEIGFPNRGGATGSKGGSTLNE--ADP---GKKQQQSQNKGLQPLLRFIEDLVNRHIISEY-GDKYT 427 (563) T ss_pred HHHHHHHHhCCCHHHccccccccccccccccchhh--ccH---HHHHHHHHHHHHHHHHHHHHHHHHhhhchhc-ccccE Confidence 8888888888887544321 111 1111100 000 0111122222333333322222221100111 12356 Q ss_pred EEeCCCCCCCHHHHHHHHHH-HhccCChHHHHHhCCCC--CCHHH-----------HHHH-HHHHHHHHHhhhh------ Q lcl|Aclame:pro 408 ITFNHSMIINEAEKIDMAAK-STGIVSDETIVSNHPWV--EDVND-----------ELER-LKKQEDTQKEYDD------ 466 (479) Q Consensus 408 i~f~~~~p~d~~e~a~~~~k-~~g~is~et~~~~l~~~--~d~~~-----------El~~-i~~E~~~~~~~~~------ 466 (479) +.|.+.-+.+..+..+.... .+|+++.-.++++++.- ++-+. .... ...+.+......+ T Consensus 428 ~~f~r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (563) T protein:vir:99 428 FQFVGGDTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLL 507 (563) T ss_pred EEeccCCHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhccccc Confidence 66766655555554433221 25899998888876542 21000 0000 0000000000000 Q ss_pred ccC-------CCCCCCcCCC Q lcl|Aclame:pro 467 LIP-------NNQDGVIDET 479 (479) Q Consensus 467 ~~~-------~~~~~~~det 479 (479) ..+ ...++..+++ T Consensus 508 ~~~~~~~~~~~~~~~~~~~~ 527 (563) T protein:vir:99 508 EGDNDDSEEGQSTDSSNDDK 527 (563) T ss_pred CCCCCCCCCCCCCCCCCCcc Confidence 000 0001111111 No 220 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=96.59 E-value=0.00049 Score=38.73 Aligned_cols=426 Identities=13% Similarity=0.086 Sum_probs=160.7 Q ss_pred CCCcccCc--------HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccc--ccc---- Q lcl|Aclame:pro 1 MLNIYISE--------TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLD--GAK---- 66 (479) Q Consensus 1 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~--~~~---- 66 (479) |++.+.+- +..|+..........-+..| ++. ...+..+.+--++++..-..+.....+ .+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 75 (563) T protein:vir:95 1 MADLFKQFRLGKDYGNNSTIAQVPIDEGLQANIKKI----EQD-NKEYQDLTKSLYGQQQAYAEPFIEMMDTNPEFRDKR 75 (563) T ss_pred ChhhhhhhhcccccccccccceeeccCChhhhHhhh----hcc-chhHHHHHhhhccCCCcchhhhHhhhcccccccccc Confidence 55444210 00111111001111111111 110 011222222222222221111110000 000 Q ss_pred --ccccc-cCc-c-ee-ecchHHHHHHHHHhhhhc-------------cCeee---cC--CchhHH--HHHHHHH----h Q lcl|Aclame:pro 67 --VDDFT-KVN-N-KA-INNYHKLLVDQKVGYSVG-------------NPIVF---NA--DDDNLT--KLLNDLL----G 116 (479) Q Consensus 67 --~~~~~-~~~-~-ri-~~n~~~~iv~~~a~~l~g-------------~~~~~---~~--~~~~~~--~~~~~~~----~ 116 (479) ..+.. .+. . .. ..++...+|++.+..+.. =++.+ +. ...+.. ..+..+. . T Consensus 76 ~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 155 (563) T protein:vir:95 76 SYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGK 155 (563) T ss_pred cCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCC Confidence 00000 000 0 00 123445555554443321 12221 11 111111 1122222 1 Q ss_pred c------CHHHHHHHHHHHHHhCCeEEEEEEe--CCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceE Q lcl|Aclame:pro 117 E------EFDDTITELYLNASNKGVEWLHPYI--NRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKI 187 (479) Q Consensus 117 n------~~~~~~~~~~~~~~~~G~~~~~v~~--d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~ 187 (479) + .+..+...++.+.+.+|.+|+.+.+ +..|++ .+..++|..+.+..+.... ......+++... ++.. T Consensus 156 ~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~-~~~~~~~y~~~~--~g~~- 231 (563) T protein:vir:95 156 DKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGK-IIKGGKRFVQVV--DKRV- 231 (563) T ss_pred CCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCCc-eeccceeEEEEe--CCce- Confidence 1 2445667788899999999887664 445665 5888999999887765421 111112222211 1111 Q ss_pred EEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 188 KRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDN 267 (479) Q Consensus 188 ~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~ 267 (479) ...+..+.+.+++... ..+. .....|.|.+..+...+..... T Consensus 232 --~~~~~~~evI~~~~~~---------------------------~~d~---------~~~~~G~Spi~~a~~~i~~~~~ 273 (563) T protein:vir:95 232 --VASFTSRELAMGIRNP---------------------------RTEL---------SSSGYGLSEVEIAMKEFIAYNN 273 (563) T ss_pred --eEEecCcceEEEeccC---------------------------CCCc---------ccCcccchHHHHHHHHHHHHHH Confidence 1112222222211100 0000 0113477877777777766655 Q ss_pred HHHHHHHHHHHhccceeee--ecCCccchh---hHHHHh--------hcccc-eecCCCCcceeeecCCCHHHHHHHHHH Q lcl|Aclame:pro 268 NISTLADNLDEIQEVIYVL--KEYPGTSLQ---EFIDNI--------RYYKS-IKVDGGGGVDKLEINIPVEAKKELLDR 333 (479) Q Consensus 268 ~~s~~~~~~~~~~~p~l~~--~g~~~~~~~---~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (479) +..-..+.+...+.|-.++ ++......+ .....+ ..+++ +.++++.+.+.++.+.....+.+..+. T Consensus 274 ~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~ 353 (563) T protein:vir:95 274 TESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNY 353 (563) T ss_pred HHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHH Confidence 5555556666666676444 342211111 111111 11222 445666555555555555667788888 Q ss_pred HHHHHHHHhCCCCCccccc--ccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceee Q lcl|Aclame:pro 334 LEKNIIIFGQGVNPESQNT--GDK----SGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQ 407 (479) Q Consensus 334 l~~~i~~~s~~~~~~~~~~--g~~----Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~ 407 (479) ..+.|...-++|+.-.+.. ++. .+..+.. +.+ .......+...|.-+++.+...+...-.... ...+. T Consensus 354 ~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~--sn~---e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~-~~~~~ 427 (563) T protein:vir:95 354 LINIISALYGIDPAEIGFPNRGGATGSKGGSTLNE--ADP---GKKQQQSQNKGLQPLLRFIEDLVNRHIISEY-GDKYT 427 (563) T ss_pred HHHHHHHHhCCCHHHccccccccccccccccchhh--ccH---HHHHHHHHHHHHHHHHHHHHHHHHhhhchhc-ccccE Confidence 8888888888887544321 111 1111100 000 0111122222333333322222221100111 12356 Q ss_pred EEeCCCCCCCHHHHHHHHHH-HhccCChHHHHHhCCCC--CCHHH-----------HHHH-HHHHHHHHHhhhh------ Q lcl|Aclame:pro 408 ITFNHSMIINEAEKIDMAAK-STGIVSDETIVSNHPWV--EDVND-----------ELER-LKKQEDTQKEYDD------ 466 (479) Q Consensus 408 i~f~~~~p~d~~e~a~~~~k-~~g~is~et~~~~l~~~--~d~~~-----------El~~-i~~E~~~~~~~~~------ 466 (479) +.|.+.-+.+..+..+.... .+|+++.-.++++++.- ++-+. .... ...+.+......+ T Consensus 428 ~~f~r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (563) T protein:vir:95 428 FQFVGGDTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLL 507 (563) T ss_pred EEeccCCHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhccccc Confidence 66766655555554433221 25899998888876542 21000 0000 0000000000000 Q ss_pred ccC-------CCCCCCcCCC Q lcl|Aclame:pro 467 LIP-------NNQDGVIDET 479 (479) Q Consensus 467 ~~~-------~~~~~~~det 479 (479) ..+ ...++..+++ T Consensus 508 ~~~~~~~~~~~~~~~~~~~~ 527 (563) T protein:vir:95 508 EGDNDDSEEGQSTDSSNDDK 527 (563) T ss_pred CCCCCCCCCCCCCCCCCCcc Confidence 000 0001111111 No 221 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=96.15 E-value=0.00095 Score=37.16 Aligned_cols=401 Identities=11% Similarity=-0.027 Sum_probs=169.2 Q ss_pred CCCcccCcHHHHHHHHhc-cChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccc-cccccccccccCcceee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKK-ESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYL-LDGAKVDDFTKVNNKAI 78 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~-~~~~~~~~~~~~~~ri~ 78 (479) |...-.-+.....-.... ......+..+...+..+- |.|-......+.... ......... . . T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~iLr~~~~~~ly~~m-----~-~ 64 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTS----------YDVVVDREFDELLQGKDGLLVYHKM-----L-S 64 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhcccc----------cccccccchhHhhccccchHHHHHH-----h-h Confidence 665554443332111100 000000000100000000 011000000000000 000000000 0 1 Q ss_pred cchHHHHHHHHHhhhhccCeeecCC--ch---hHHHHHHHHHhc--------CHHHHHHHHHHHHHhCCeEE-EEEEe-C Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGNPIVFNAD--DD---NLTKLLNDLLGE--------EFDDTITELYLNASNKGVEW-LHPYI-N 143 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~~~~~~~~--~~---~~~~~~~~~~~n--------~~~~~~~~~~~~~~~~G~~~-~~v~~-d 143 (479) .....-.+.+....+.+.+.++... +. ...+.+..+... +|...+.++ .++..||.++ +.+|. . T Consensus 65 D~hi~s~l~~Rk~av~~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~-lda~~~G~s~~Eivw~~~ 143 (448) T protein:vir:79 65 DGTVKNALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIY-ENAYIYGMAAGEIVLTLG 143 (448) T ss_pred ChHHHHHHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHH-HHhhhhcceeEEEEeeec Confidence 2445556777778888888888632 22 233344444321 355544444 6688899865 55664 3 Q ss_pred CCCceEEE---EEcccee-EEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccc Q lcl|Aclame:pro 144 RKGEFKYV---IIPAEEA-IPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGK 219 (479) Q Consensus 144 ~~~~~~i~---~~~p~~~-~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~ 219 (479) .+|...+. ..+|... ...|++... +. +.+ ..+.... T Consensus 144 ~~g~~~~~~l~~r~~~~~~~f~~~~d~~--l~--------------------~~~---------~~~~~~~--------- 183 (448) T protein:vir:79 144 ADGKLILDKIVPIHPFNIDEVLYDEEGG--PK--------------------ALK---------LSGEVKG--------- 183 (448) T ss_pred CCCceecccccccCCccccceeeecCCc--eE--------------------Eee---------cCCcccc--------- Confidence 46654332 2222211 111222111 00 000 0000000 Q ss_pred cccccccccccccccccccccceEEecC----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccch- Q lcl|Aclame:pro 220 MTDIQEGHFRINNKEQGWGKVPFIPFKN----NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSL- 294 (479) Q Consensus 220 ~~~~~~~~~~~~~~~~~~g~vPvv~~~n----~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~- 294 (479) +....+..+-|++.+ +.+.. +..|.|.+..+....--=+..+.+++.-++.++.|+.+.+...+... T Consensus 184 ------~~~~~~~~~lP~~~~--i~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vgky~~ga~~~ 255 (448) T protein:vir:79 184 ------GSQFVSGLEIPIWKT--VVFLHNDDGSFTGQSALRAAVPHWLAKRALILLINHGLERFMIGVPTLTIPKSVRQG 255 (448) T ss_pred ------cccCCCccccccceE--EEEecCccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCcC Confidence 000001112233332 22222 34577888777666555566778899999999999998875433221 Q ss_pred -hh------HHHHhh--cccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHH Q lcl|Aclame:pro 295 -QE------FIDNIR--YYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYS 365 (479) Q Consensus 295 -~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~ 365 (479) ++ ....+. ...+..++.+.++++++...+...+..+++...+.|...--+..++.+..|+.++.+...... T Consensus 256 ~~~~~~l~~av~~i~~g~~a~~iiP~~~~ie~~ea~~~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~g~~~~~~~~~~~ 335 (448) T protein:vir:79 256 TKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARALGIDFNTVQLNMGVQAINIGEFVS 335 (448) T ss_pred HHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecCCCcccHHHHHHHHHHHHHHHHhhhhhccccccchhhhhhhhHHH Confidence 11 122222 223456889999999988766666777888888877654433334433333222222221111 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHhccCCh-HH-HHHhCC Q lcl|Aclame:pro 366 LLDLKCSKTEKKFKKAIR-ELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSD-ET-IVSNHP 442 (479) Q Consensus 366 ~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~g~is~-et-~~~~l~ 442 (479) -....+..-.+.+...+. ++++-++ ....+.. .....+.|....+.|..+.++.+.+++++... +. ..+.++ T Consensus 336 v~~~~~~aDa~~i~~tln~~li~~l~---~lNfg~~--~~~P~~~f~~~e~~Dl~~~a~~~~~l~~~~~~~~~~~~~~~~ 410 (448) T protein:vir:79 336 LTQQTIISLQREFASAVNLYLIPKLV---LPNWPSA--TRFPRLTFEMEERNDFSAAANLMGMLINAVKDSEDIPTELKA 410 (448) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCc--CCCcEEEecCCChHHHHHHHHHhhhhhccchhhHHHHHHhhc Confidence 111222233344444443 2343333 2222211 12347888888888989999999888765322 22 222222 Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 443 WVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 443 ~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) +.++... ++.. +......+.+......++ T Consensus 411 -~p~~~~~-----~~~~--a~~~~~~~~~~~~~~~~~ 439 (448) T protein:vir:79 411 -LIDALPS-----KMRR--ALGVVDEVREAVRQPADS 439 (448) T ss_pred -CCCCCCC-----cccc--ccCCCCcccccccCCccc Confidence 2221110 0000 000001111111222222 No 222 >protein:vir:80211 Length: 514 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522882;genbank:gi:158345175;genbank:GeneID:5687474 Probab=96.07 E-value=0.001 Score=36.93 Aligned_cols=423 Identities=10% Similarity=0.032 Sum_probs=166.8 Q ss_pred HHHHHHHHHHH-hhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhcc------ Q lcl|Aclame:pro 24 LVKVIEHYILK-HRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGN------ 96 (479) Q Consensus 24 ~~~~i~~~~~~-~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~------ 96 (479) ..+....+..+ +|.......+++++ +-+|++-.......... ....+..-+-+...++.+|+-|.+- T Consensus 1 m~~~~~~l~~k~~R~~~e~~w~e~a~--~~lP~~~~~~~~~~~~~----~~~~~~~dstg~~a~~~LAa~l~~~ltpp~~ 74 (514) T protein:vir:80 1 MRQQASAMWAEYRDSTAIRKAEDFAK--FTIASLMVDPLDKTHQA----EVVEYDFQSAGAFLVNNLTAKLALTLFPPGR 74 (514) T ss_pred CccchHHHHHHhhcchHHHHHHHHHH--HhcccccCCCCCCcccc----cccccccchhHHHHHHHHHHHHHhhhcCCCC Confidence 11111222222 22222333333333 11221110000000000 0001122344555666666666433 Q ss_pred C-eeecCCch-------------hHHHHH--------HHHHhcCHHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 97 P-IVFNADDD-------------NLTKLL--------NDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIP 154 (479) Q Consensus 97 ~-~~~~~~~~-------------~~~~~~--------~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~ 154 (479) | +++..+++ +++..+ ..+..++|.....++.++...+|.+.+++..+. + .++.++ T Consensus 75 ~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~~-~--~~~~~p 151 (514) T protein:vir:80 75 PSFQIELDDTLQELAAANGIDQSELHSRTADLERRATRRLFVNASLSKLHRILKLLVVTGNALFYREPGT-G--KMLVWT 151 (514) T ss_pred cccccccCchhhhhccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEEEecCC-C--cEEEEE Confidence 1 23332211 122222 224458999999999999999999987764332 2 355665 Q ss_pred cceeEEEEcCCCCCceEEEEEEEeeeccc---------------CceEEEEEEEeCCcEEEEEEcCCccccccccccccc Q lcl|Aclame:pro 155 AEEAIPIWDSKRQRELVAFIRFYYIEDID---------------GNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGK 219 (479) Q Consensus 155 p~~~~~~~d~~~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~ 219 (479) -.++++ -.+.. ..+..+++..+..-.. .+....+++|+. ++ +...+....... T Consensus 152 l~~y~v-~~d~~-G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~--v~-~~~~~~~~~~sv------- 219 (514) T protein:vir:80 152 MQSYTV-RRTSH-GDPAVVVLRQQMPFRELTPEIQADAQAKQIAKRDSDKCDLYTV--IE-WQPTPNGKRCAV------- 219 (514) T ss_pred cCeEEE-eeCCC-cCeEEEEeeeeecHHHhhhhhhhhhhhhhccCCCCCceEEEEE--EE-eecCCCCeEEEE------- Confidence 555444 33333 3444445444432000 111122333321 11 111111110000 Q ss_pred cccccccccccccccccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccch Q lcl|Aclame:pro 220 MTDIQEGHFRINNKEQGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSL 294 (479) Q Consensus 220 ~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~ 294 (479) +... .+.........++..+|++.+. ++.+|+|-.++..+-+..+|.+.-...........|.+.+.-.+.... T Consensus 220 ~~e~-~g~~i~~es~y~~~e~P~i~~Rw~~~~ge~YGrgp~~~al~D~k~L~~l~~~~l~~~~~a~~~~~~v~~~g~~~~ 298 (514) T protein:vir:80 220 WHEL-EGKRVGPESSYPAHLCPYVPVAWNVPDGEHYGRGYVEEYSGDFARLSILSERLGLYEFEALSLLNLVDEAKGGAV 298 (514) T ss_pred EEec-cceeecccCccccccCCeeeeeeEecCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeCcccccch Confidence 0011 1111111222234456776553 346899999999999999998877777777777777665432111111 Q ss_pred hhHHHHhhcccceecCCCCcceeeecC--CCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 295 QEFIDNIRYYKSIKVDGGGGVDKLEIN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCS 372 (479) Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~ 372 (479) ... . ....+.+.....++++.+... .+....+..++.++..|...-..... .......||+.+..+.. T Consensus 299 ~~l-~-~~~~g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aFml~~~-~rd~~rvTAtEV~~r~~------- 368 (514) T protein:vir:80 299 DDY-R-DAETGDFVPGQVGSVASYERGDYNKIAQASASVESIVMRLNRAFMYTGQ-VRDAERVTVEEIRTVAE------- 368 (514) T ss_pred hhh-c-ccCCceeecCCCccceeeecCcccchHHHHHHHHHHHHHHHHHHhhhcc-CCCCCCCCHHHHHHHHH------- Confidence 111 1 111123333444556666543 45666677788777777543222111 11223468888776433 Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHhc--CCC-ccccceeeEEeCCCCC-CCHHHHHH-------HHHHHhcc-- Q lcl|Aclame:pro 373 KTEKKFKKAIREL--------LWFVCEYLKIS--GNK-SYDYKTVQITFNHSMI-INEAEKID-------MAAKSTGI-- 431 (479) Q Consensus 373 ~~~~~~~~~l~~~--------~~li~~~~~~~--~~~-~~~~~~i~i~f~~~~p-~d~~e~a~-------~~~k~~g~-- 431 (479) ++...++..+.++ ++..+.++... +.. +.+..-+.+.+.-++. -.....++ .+..++++ T Consensus 369 E~~~~LGpv~~rl~~Ell~Pli~r~~~il~r~~~g~lP~~p~~l~~~~~vs~la~l~r~~~~~~l~~~~~~i~~l~~~~p 448 (514) T protein:vir:80 369 EAENLLGGVYSLLAETLQAPLAYLTMYEASRGNGGMLLGIAQGVYRPSIITGIPALTRNIETANILRATQEASAIVPALV 448 (514) T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhcceeeecHHHHHHHHHHHHHHHHHHHHHHHhccch Confidence 3334444333332 12112222111 111 1112223444422221 11111122 22222222 Q ss_pred -----CChHHHHHh----CCCC-----CCHHHHHHHHHHHHHH-HHhhhhcc---CCCCCCCcCCC Q lcl|Aclame:pro 432 -----VSDETIVSN----HPWV-----EDVNDELERLKKQEDT-QKEYDDLI---PNNQDGVIDET 479 (479) Q Consensus 432 -----is~et~~~~----l~~~-----~d~~~El~~i~~E~~~-~~~~~~~~---~~~~~~~~det 479 (479) +....+++. +|.- .+ +++++..+++.++ ..+..+.. ....-+.+=-+ T Consensus 449 ~v~d~id~d~~~~~~a~~~Gvp~~~i~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (514) T protein:vir:80 449 QLSKRFDPEKLVERIFANNSVDLSTLSKD-PDVVAAEAEQEAALAQQQLDVASGALAAETSAGVLT 513 (514) T ss_pred hhhhcCCHHHHHHHHHHHhCCCHhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC Confidence 223334433 2221 12 2222222211111 11111110 00000000011 No 223 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=95.76 E-value=0.0015 Score=36.08 Aligned_cols=383 Identities=7% Similarity=-0.055 Sum_probs=154.8 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcce--eecchHHHHHHHHHhhhhccCee Q lcl|Aclame:pro 22 INLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNK--AINNYHKLLVDQKVGYSVGNPIV 99 (479) Q Consensus 22 ~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~r--i~~n~~~~iv~~~a~~l~g~~~~ 99 (479) .-|.+.+.. +... .-.+..-........ ............. ...+.....|+.+++-+.+-|+. T Consensus 1 Mg~~~~~~~-----~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~ 66 (423) T protein:vir:81 1 MGFLQKLGL-----APSV------VATPEPIELVGPIFE---SLKLSTKNMTVEQIWEDQPHLRTVTTFIARNVASLQLQ 66 (423) T ss_pred CchhHhhcc-----cccc------ccCcccccccccccc---ccccccchhhHHHHHHhhhHHHHHHHHHHHhHhhCceE Confidence 111111100 0000 000000000000000 0000000000000 01344556788888888777876 Q ss_pred e---cCCc--hhH-H-HHHHHHH-hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEE---EcCC Q lcl|Aclame:pro 100 F---NADD--DNL-T-KLLNDLL-GEE---FDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPI---WDSK 165 (479) Q Consensus 100 ~---~~~~--~~~-~-~~~~~~~-~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~---~d~~ 165 (479) + ..+. +.. + .+...+. -|. ...+...+....+.+|.+|+.+..+..+...+..+.|..+..+ .... T Consensus 67 ~~~~~~dg~~~~~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~ 146 (423) T protein:vir:81 67 AFERVEDGGRERVREGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKD 146 (423) T ss_pred EEEEecCCceeeeccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccC Confidence 4 2221 111 1 1222222 232 4455566778889999999998876543333333333322211 1110 Q ss_pred CCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEe Q lcl|Aclame:pro 166 RQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPF 245 (479) Q Consensus 166 ~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~ 245 (479) ....+.+-+ ......+|. ...+.++.+.+++. .++ T Consensus 147 ~~~~~~Y~~--~~~~~~~g~----~~~~~~~evih~r~------------------------------~~~--------- 181 (423) T protein:vir:81 147 GWGSLDYII--IESGDNDGR----SVKVPGERVIHRHG------------------------------YNP--------- 181 (423) T ss_pred CCcceEEEE--EEecCCCce----EEEEcccceEEecC------------------------------CCC--------- Confidence 001110000 000000110 00111222222110 000 Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC----CccchhhH----HHHhh---------ccccee Q lcl|Aclame:pro 246 KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY----PGTSLQEF----IDNIR---------YYKSIK 308 (479) Q Consensus 246 ~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~----~~~~~~~~----~~~~~---------~~~~~~ 308 (479) .....|.|.+..+...++.......-....+...+.|-.++... ++...++. ...+. .++++. T Consensus 182 ~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~n~g~~~v 261 (423) T protein:vir:81 182 KTMKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGKWDAESRTRFMANLRASFSPKSSDVGGTLL 261 (423) T ss_pred CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCccCCHHHHHHHHHHHHHHhccccccCCccee Confidence 00124778777777766665555544555556666676665421 11111221 11111 234556 Q ss_pred cCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 VDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWF 388 (479) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~l 388 (479) ++++.+.+.+........+.+..+..+..|...-++|+.-.+..+..+...++...... +...|.-.++. T Consensus 262 l~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~t~sn~e~~~~~f----------~~~~L~P~~~~ 331 (423) T protein:vir:81 262 LEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNANYSNVREFRKAL----------YGDNLGSWIRI 331 (423) T ss_pred cCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHH----------HHHHHHHHHHH Confidence 66666666555444444566666777778888878886554433332222222111111 11222222222 Q ss_pred HHHHHHhcC----CCccccceeeEEeCCCCCCCHHHHHHHHHHH---hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 389 VCEYLKISG----NKSYDYKTVQITFNHSMIINEAEKIDMAAKS---TGIVSDETIVSNHPWVEDVNDELERLKKQEDTQ 461 (479) Q Consensus 389 i~~~~~~~~----~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~---~g~is~et~~~~l~~~~d~~~El~~i~~E~~~~ 461 (479) +...+...- +.+.....+++.+...+..|..+.++++.++ .|+++.-.+++.++.-..+ .-+.+-- . T Consensus 332 ie~~l~~~L~~~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~l~~~G~~T~NE~R~~~gl~p~~--gGD~~~~----p 405 (423) T protein:vir:81 332 IQDVMNLFLLPRVGIDNEKFYFEFNLEEKLRASFEEAAEIKRAAVGNVAWMTINEVRAMDNLPSID--GGDDLAR----P 405 (423) T ss_pred HHHHHhhhhcCccccccCccEEEecchhhhccCHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCCC--Ccceeec----c Confidence 222222111 1111112344444566677888888887764 4799998888887542211 1111100 0 Q ss_pred HhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 462 KEYDDLIPNNQDGVIDET 479 (479) Q Consensus 462 ~~~~~~~~~~~~~~~det 479 (479) ........+...+.+.|| T Consensus 406 ~n~~~~~~~~~~~~~~~t 423 (423) T protein:vir:81 406 LNTEFGDSEDAPGEEVET 423 (423) T ss_pred cccccCccCCCCCCCCCC Confidence 001111122233455555 No 224 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=95.52 E-value=0.0019 Score=35.49 Aligned_cols=368 Identities=8% Similarity=-0.015 Sum_probs=165.4 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccc--ccc------------------ccccccc---- Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVN--NKR------------------RYYLLDG---- 64 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~--~~~------------------~~~~~~~---- 64 (479) |. +.++++|.-... -++ .+..... T Consensus 1 Mg--------------------------------l~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 48 (431) T protein:vir:10 1 MG--------------------------------LFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLK 48 (431) T ss_pred Cc--------------------------------chhhhhcCcccccccccccccccccccccccccccccccccchHHH Confidence 11 122222211000 000 0000000 Q ss_pred -----ccccc-cccCcceeecchHHHHHHHHHhhhhccCeeec-CCc-h--hH-HHHHHHHH--hcC---HHHHHHHHHH Q lcl|Aclame:pro 65 -----AKVDD-FTKVNNKAINNYHKLLVDQKVGYSVGNPIVFN-ADD-D--NL-TKLLNDLL--GEE---FDDTITELYL 128 (479) Q Consensus 65 -----~~~~~-~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~-~~~-~--~~-~~~~~~~~--~n~---~~~~~~~~~~ 128 (479) ..... ......-+.+.-....|+.+++-+..-|+++- .++ . .. ..+...+. -|. -..+...++. T Consensus 49 ~~~~~~~~~g~~v~~~~al~~~~V~~ci~~Ia~~iA~lp~~v~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~ 128 (431) T protein:vir:10 49 EYIRRGELNGGTGRETRALRNMAVLRCVTLISGTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQL 128 (431) T ss_pred HhhccCccCcceechhhhhccHHHHHHHHHHHHhhccCceEEEEecCceeeeccchHHHHHhhccCCCCCHHHHHHHHHH Confidence 00000 00000011223344556777777777787641 111 1 11 11222222 132 2344566788 Q ss_pred HHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcc Q lcl|Aclame:pro 129 NASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSF 208 (479) Q Consensus 129 ~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~ 208 (479) ..+.+|.+|+.+..+...-+.+..++|..+.+..+... .+ +|.....+|.. ..+....+.+++.- T Consensus 129 ~lll~Gna~~~i~r~~g~~~~L~pl~~~~v~~~~~~~~--~~-----~y~~~~~~g~~----~~~~~~dViHir~~---- 193 (431) T protein:vir:10 129 RALLDGESMARIVWSGNRPIRLIPMDRGSAKGRLTSTW--QI-----VYDYTTPTGDK----IELPAREVFHLRDL---- 193 (431) T ss_pred HHhhcCCeEEEEEEcCCceEEEEEEcCceeEEEEcCCC--eE-----EEEEEeCCceE----EEEchhhEEEecCc---- Confidence 89999999999988853334677888998887665432 21 12222223321 11222333332110 Q ss_pred ccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeec Q lcl|Aclame:pro 209 IQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKE 288 (479) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g 288 (479) + .+...|.|.+.-+...+........-..+.+...+.|-.++.. T Consensus 194 --------------------------~----------~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~ 237 (431) T protein:vir:10 194 --------------------------S----------IDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIEV 237 (431) T ss_pred --------------------------C----------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEec Confidence 0 0223477777776666665555555555556666677666553 Q ss_pred CCccchhhHH----HHh--------hcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccccc Q lcl|Aclame:pro 289 YPGTSLQEFI----DNI--------RYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKS 356 (479) Q Consensus 289 ~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~S 356 (479) ... ..++.. ..+ ..++++.++++.+.+.+........+.+..+..+..|...-++|+.-.+.....+ T Consensus 238 ~~~-ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~~~~~t 316 (431) T protein:vir:10 238 PKE-LSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDDTSW 316 (431) T ss_pred CCC-CCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCCc Confidence 222 122211 111 1234566766666666655444555667777778888888788876554332223 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCccccceeeEEeCCCCCCCHHHHHHHHHHHh----- Q lcl|Aclame:pro 357 GVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG--NKSYDYKTVQITFNHSMIINEAEKIDMAAKST----- 429 (479) Q Consensus 357 g~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~--~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~----- 429 (479) +..++....... ...|.-.++.|...+...- ........+++.+...+..|..+.++.+.++. T Consensus 317 ~sn~eq~~~~f~----------~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~ 386 (431) T protein:vir:10 317 GSGIEQLAIFFI----------QYGLSHWFVSWEQAAARAFLPEKMLGQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQ 386 (431) T ss_pred cccHHHHHHHHH----------HHHHHHHHHHHHHHHHhhccChhhcCCceEEEechhhhccCHHHHHHHHHHHHhcccc Confidence 333322222221 2222222222222221110 00111234556666667788999999888763 Q ss_pred -ccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 430 -GIVSDETIVSNHPW--VEDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 430 -g~is~et~~~~l~~--~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) |+++.-.++++++. ++++... +.- .+. ...+..+....-.| T Consensus 387 ~g~lT~NE~R~~~gl~p~~~~~gD--~~~------~p~-n~~~~~~~~~~p~~ 430 (431) T protein:vir:10 387 SPWMKQNEVREMLDLPRADDPVAD--QLR------NPM-TQKQKGSGDEPPAT 430 (431) T ss_pred cCccCHHHHHHHhCCCCCCCcccc--cee------ccc-ccccCCCCCCCCCC Confidence 35888888888654 3332221 110 000 11111111111111 No 225 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=95.48 E-value=0.002 Score=35.40 Aligned_cols=366 Identities=9% Similarity=0.005 Sum_probs=149.9 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcc-cccccccc-cccccccccccCcceee-cchHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDV-NNKRRYYL-LDGAKVDDFTKVNNKAI-NNYHKLL 85 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~-~~~~~~~~-~~~~~~~~~~~~~~ri~-~n~~~~i 85 (479) |..+. +++-+... +..+.... ..............++. .+..... T Consensus 1 Mg~~~--------------------------------~f~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 48 (403) T protein:vir:80 1 MGLFN--------------------------------FFRRKTRSEPTNAISWFLTQEAYDTLAIPGYTRLSDNPEVRMA 48 (403) T ss_pred Ccccc--------------------------------cccccccccccchhhhhcccccccccccchhhhhhhhHHHHHH Confidence 11111 11111000 00000000 00000000000000111 1233455 Q ss_pred HHHHHhhhhccCeeec--CCc---hhHHHHHHHHH--hcC---HHHHHHHHHHHHHh--CCeEEEEEEeCCCCce-EEEE Q lcl|Aclame:pro 86 VDQKVGYSVGNPIVFN--ADD---DNLTKLLNDLL--GEE---FDDTITELYLNASN--KGVEWLHPYINRKGEF-KYVI 152 (479) Q Consensus 86 v~~~a~~l~g~~~~~~--~~~---~~~~~~~~~~~--~n~---~~~~~~~~~~~~~~--~G~~~~~v~~d~~~~~-~i~~ 152 (479) |+.+|+-+..-|+.+- .++ .....+...+. -|. -..+...++...+. .|.+|+.+..+..|.+ .+.. T Consensus 49 I~~ia~~iA~~p~~~~~~~~~g~~~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~ 128 (403) T protein:vir:80 49 VHKIAELISSMTIHLMQNTDNGDIRIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIP 128 (403) T ss_pred HHHHHHhhhhCceEEEEecCCceeecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEE Confidence 7777777777777641 111 11122223332 232 22344455666665 4678888888877876 5778 Q ss_pred EccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccc Q lcl|Aclame:pro 153 IPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINN 232 (479) Q Consensus 153 ~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479) ++|..+.++.++.. .. + +|. + ..|..+.+.+++... T Consensus 129 l~p~~v~~~~~~~g-~~----~-~y~-----~------~~~~~~eiih~~~~~--------------------------- 164 (403) T protein:vir:80 129 LAPSKVSFVDTDTG-YQ----I-WYQ-----G------KAYNYDEVLHFIVNP--------------------------- 164 (403) T ss_pred EcCCeeEEEEcCCc-eE----E-EEe-----e------cccchhhEEEEeccC--------------------------- Confidence 89988877655432 00 1 111 1 112223333322100 Q ss_pred ccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccc---hhhHHHH--------h Q lcl|Aclame:pro 233 KEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTS---LQEFIDN--------I 301 (479) Q Consensus 233 ~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~---~~~~~~~--------~ 301 (479) +++ +...|.|.+..+...+.............+...+.|-.++.-..... .+..... . T Consensus 165 --~~~---------~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (403) T protein:vir:80 165 --DPE---------KPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDAATAELSSEEGRNAVFKKYLEAS 233 (403) T ss_pred --CCc---------CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCChHHHHHHHHHHHHHHhhhh Confidence 000 11236676666666665555444444455555566666654322111 1111111 1 Q ss_pred hcccceecCCCC-cceeee-cCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 RYYKSIKVDGGG-GVDKLE-INIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFK 379 (479) Q Consensus 302 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~ 379 (479) ..++.+.++.+. +.+-++ .+.....+.+..+.....|+..-++|+.-.+.....+.+... ... T Consensus 234 ~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~---------------f~~ 298 (403) T protein:vir:80 234 EAGQPWIIPAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLLGVGKYDKDEYNN---------------FIN 298 (403) T ss_pred hcCCeeeecccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCccHHHHHH---------------HHH Confidence 223333343322 222222 223333455666677777777767775333211111221111 222 Q ss_pred HHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCH--HHH---HH Q lcl|Aclame:pro 380 KAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDV--NDE---LE 452 (479) Q Consensus 380 ~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~--~~E---l~ 452 (479) ..|.-.++.+...+...--.+.+ ..+++.....+..|..+.++.+.++ +|+++.-.++++++.-..+ +.- .. T Consensus 299 ~~l~P~~~~ie~~l~~kll~~~~-~~~~f~~~~ll~~d~~~~~~~~~~~~~~Gi~t~NE~R~~~gl~p~~ggd~~~~~~n 377 (403) T protein:vir:80 299 STILPIAKGIEQELTRKLLISPD-LYFKFNPRSLYAYDLKELAEVGSNMYVRGLMEGNEVRDWLGLSPKEGLSELVILEN 377 (403) T ss_pred HHHHHHHHHHHHHHHHhccCCCC-cEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeeccc Confidence 33333333333332221111111 2334444566778898999988876 6899999998887543211 100 00 Q ss_pred HHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 453 RLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 453 ~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) .+-.+. ..+....-..+.++.+++| T Consensus 378 ~~pl~~--~~~~~~~k~ge~~~~~~~~ 402 (403) T protein:vir:80 378 YIPLDK--IGDQNKLKGGEKGGADGQT 402 (403) T ss_pred ccchhh--ccchhhccCCCCCCCCCCC Confidence 000000 0111111122222333333 No 226 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=95.45 E-value=0.002 Score=35.33 Aligned_cols=402 Identities=11% Similarity=0.034 Sum_probs=168.5 Q ss_pred CCcccCc-HH--HHHHHHhccChHHHHHHHHHHHHH-hhHHHHHHHHHHhccCCcccccccccccccccccccccCccee Q lcl|Aclame:pro 2 LNIYISE-TD--LIKVQLKKESTINLVKVIEHYILK-HRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA 77 (479) Q Consensus 2 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri 77 (479) |+-.+++ +- .+-........ +....++.. +. ..+ |.....+.|+ .... T Consensus 1 ~~~~~~~~~p~~~~g~~~~~~~~-~~~~~~~~~-e~~~~l-r~~~~~~ly~--------------------~m~e----- 52 (469) T protein:vir:10 1 MTERVKTAAPVSEAGYVFGSGVV-DGWTVWDPF-EQTPEL-QWPQSVAVYS--------------------RMDN----- 52 (469) T ss_pred CCCcccCCCCccchhhhhhcccc-cchhhcccc-cccccc-ccccchHHHH--------------------HHHh----- Confidence 2222111 11 11111111000 000000000 00 000 0000000111 0000 Q ss_pred ecchHHHHHHHHHhhhhccCeeecCC--chhHHHHHHHHH------------------hcCHHHHHHHHHHHHHhCCeEE Q lcl|Aclame:pro 78 INNYHKLLVDQKVGYSVGNPIVFNAD--DDNLTKLLNDLL------------------GEEFDDTITELYLNASNKGVEW 137 (479) Q Consensus 78 ~~n~~~~iv~~~a~~l~g~~~~~~~~--~~~~~~~~~~~~------------------~n~~~~~~~~~~~~~~~~G~~~ 137 (479) ......-.+++....+.+-+.++... +++..+.+.... ...+...+.++...+..||.++ T Consensus 53 ~D~~i~s~l~~rk~av~~~~w~v~p~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~ 132 (469) T protein:vir:10 53 EDSRVTSLLEAISLPIRSTPWRIRANGASDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAV 132 (469) T ss_pred hChHHHHHHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCcee Confidence 12444556666777777777777542 222222222211 1134556667777788899865 Q ss_pred -EEEEeCC----CCceEEEEEccce---e-EEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcc Q lcl|Aclame:pro 138 -LHPYINR----KGEFKYVIIPAEE---A-IPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSF 208 (479) Q Consensus 138 -~~v~~d~----~~~~~i~~~~p~~---~-~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~ 208 (479) +.||... +|...+.-+.+.. + .-.|++.. .++. ++.. ... ..+........ T Consensus 133 ~Eivw~~~~~~~dG~~~~~~l~~rp~~~i~~~~~~~~~--~l~~-~~~~---~~~------------~~~~~~~~~~~-- 192 (469) T protein:vir:10 133 FEQVYRPRNQSPDGRFWLRKLAPRPQWTISKFNVAPDG--GLES-IEQI---APP------------ARTRGSLYVAN-- 192 (469) T ss_pred eeeeeecccccCCCceeeeeeeecCcccceeeeeccCC--ceee-eeec---Ccc------------cccccccccCC-- Confidence 5666422 3444433322221 1 01112111 1110 0000 000 00000000000 Q ss_pred ccccccccccccccccccccccccccccccccceEEec--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeee Q lcl|Aclame:pro 209 IQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK--NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL 286 (479) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~--n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~ 286 (479) .......+...+-.++-. .+..|.|.+..+-...--=+..+.+++.-++.++.|+.+. T Consensus 193 --------------------~~~~~lp~~k~i~~~~~~~~g~p~g~gLlr~~~~~~~fK~~~~~~w~~f~EryG~P~~vg 252 (469) T protein:vir:10 193 --------------------IAPPEIPVNRLVVYTRNKRPGQWQGKSILRSAYKHWLLKDKLLRIEAATAERNGMGIPVG 252 (469) T ss_pred --------------------CCccccccCcEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcceEE Confidence 000000111111112111 2466888888776665555567788999999999999988 Q ss_pred ecCCccchhhH------HHHhh--cccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCcccccccccHH Q lcl|Aclame:pro 287 KEYPGTSLQEF------IDNIR--YYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGV 358 (479) Q Consensus 287 ~g~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~ 358 (479) +...+...++- ...+. ...++.++.+.++++++...+...+...++...+.|...--+..++.+..|...|. T Consensus 253 ky~~~a~~~ek~~l~~a~~~~~~g~~a~~iip~~~~ie~~ea~g~~~~~~~li~~~d~~Isk~iLG~tlTs~~~gGS~a~ 332 (469) T protein:vir:10 253 TASSATDEDEVRKMAALARSVRGGINAGVGLAQGQILELLGVSGNLPDIRRAIEGHDRSIALSGLAHFLNLDGKGGSYAL 332 (469) T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCceEEEccCCceEEEeecCCCchHHHHHHHHHHHHHHHHHhcccccccCccchhhH Confidence 75444333321 22222 23345678899999999888778899999999888876554444444322221111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hcc---- Q lcl|Aclame:pro 359 ALKFLYSLLDLKCSKTEKKFKKAIR-ELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGI---- 431 (479) Q Consensus 359 Ai~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~---- 431 (479) | .....-....+..-.+.+...+. ++++-++. ...+. +.....+.|.... .+....++.+.++ .|+ T Consensus 333 ~-~vh~ev~~d~~~sDa~~i~~tln~~li~~l~~---lN~g~--~~~~P~~~~~~~e-~~~~~~a~~i~~l~~~G~~~~~ 405 (469) T protein:vir:10 333 A-SVLEDPFTQAVHAYATSICRIANQHIIEDLVD---INFGV--DTPAPVLTFDPIG-SRQDLTAAAVKLLYDAGVFDDD 405 (469) T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCC--CCCccEEEecCCC-CcHHHHHHHHHHHHhcCCccCc Confidence 1 11112222233444445555553 34444433 22221 1223467776543 4556677888776 455 Q ss_pred -CChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 432 -VSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 432 -is~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) ++.+.+.+.++. ..++.+-.-+...+..........+....+.+..| T Consensus 406 ~~~~~~~~e~~gi-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (469) T protein:vir:10 406 PAVKRAIRQRFNL-PSELNDTPSAEPEEPAAVPNQSAAPARTRSSGNAD 453 (469) T ss_pred cccHHHHHHHhCC-CCCCCCcccccchhcccCCCCCccccccCCCCCcc Confidence 455667777764 32222211111111111111111122222222222 No 227 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=94.78 E-value=0.001 Score=37.03 Aligned_cols=176 Identities=14% Similarity=0.093 Sum_probs=86.6 Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHH---HHhhc-ccceecCCCCcceeeecCCCH Q lcl|Aclame:pro 249 EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFI---DNIRY-YKSIKVDGGGGVDKLEINIPV 324 (479) Q Consensus 249 ~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~ 324 (479) -+. + +++++.+. .+........ ...+. ...+.++++. -+|-+.+.+. T Consensus 1 V~k------~-----------~~l~~~~~-----------~~~~~~~~r~~~~~~~~~~~~~~~ld~~~-e~~e~~~~~l 51 (201) T protein:vir:10 1 MWK------A-----------KGLADLCD-----------DSDGAARLRLAQVDNNSGVGQAIGIDADS-EEYNVLNSDI 51 (201) T ss_pred Ccc------c-----------hHHHHHhc-----------CChHHHHHHHHHHHHhhhhhhhheeecCC-cceeeeecCc Confidence 000 0 11111110 0000000000 01111 1222233322 2466667777 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCccccc---c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 325 EAKKELLDRLEKNIIIFGQGVNPESQNT---G-DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKS 400 (479) Q Consensus 325 ~~~~~~~~~l~~~i~~~s~~~~~~~~~~---g-~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~ 400 (479) .++...+......|...+..|-.-..+. | |.||..=..-|...+.. ..+..+.+.+++++++++. T Consensus 52 sGl~d~l~~~~~~iaa~s~iP~t~LfG~sp~Glnatge~d~~nyyd~i~~--~Qe~~l~p~le~l~~~~~~--------- 120 (201) T protein:vir:10 52 GGIDTFLSQKFDRIVALSGIHEIILKGKNVGGVSASQNTALETFYGYVDR--KRKAELLPLLEFLLPFIVT--------- 120 (201) T ss_pred CChHHHHHHHHHHHHhHhcCchhhhcCCCCccccccchhHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcC--------- Confidence 7889999999999999998885443332 2 35777543333333222 2236678888887776442 Q ss_pred cccceeeEEeCCCCCCCHHHHHHHHHHH---------hccCChHHHHHhC------CCCCC--HHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 401 YDYKTVQITFNHSMIINEAEKIDMAAKS---------TGIVSDETIVSNH------PWVED--VNDELERLKKQEDTQKE 463 (479) Q Consensus 401 ~~~~~i~i~f~~~~p~d~~e~a~~~~k~---------~g~is~et~~~~l------~~~~d--~~~El~~i~~E~~~~~~ 463 (479) ..++.+.|+|-...+..+.|+...+. +|++|.+.+.+.| +++.+ .+.++. T Consensus 121 --~~~~~~~f~pL~~~s~kekAei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~----------- 187 (201) T protein:vir:10 121 --EQEWSVEFNPLSQVSDKDKSEILEKNVNSVAALIAAGIIDADEARDTLRAISTEVKIGEGSIQTEVV----------- 187 (201) T ss_pred --CCCceEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCcCCCCCCCCCcccc----------- Confidence 13678999999999999988866553 4778877776554 22221 111110 Q ss_pred hhhccCCCCCCCcC Q lcl|Aclame:pro 464 YDDLIPNNQDGVID 477 (479) Q Consensus 464 ~~~~~~~~~~~~~d 477 (479) ........+.+..+ T Consensus 188 ~~e~~dp~~~~~~~ 201 (201) T protein:vir:10 188 INESEDPLDVSANN 201 (201) T ss_pred ccccCCCCCCCCCC Confidence 00000111111111 No 228 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=94.75 E-value=0.0036 Score=33.98 Aligned_cols=440 Identities=12% Similarity=0.000 Sum_probs=163.1 Q ss_pred HHHHhccChHHHHHHH----HHHH-HHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHH Q lcl|Aclame:pro 13 KVQLKKESTINLVKVI----EHYI-LKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVD 87 (479) Q Consensus 13 ~~~~~~~~~~~~~~~i----~~~~-~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~ 87 (479) -++..+..-.-.++.. +... .+...+.+. -.++|.++.-+. .+. .+.......-..++....|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-p~~---------~~~~L~~~~e~~~~~~~~i~ 69 (651) T protein:vir:99 1 MTDTTGETQETKVHVEGLGGEADLAKSPNSTQIP-DHRIQSHNVGVN-PPY---------NPDRLAAFLELNETLATGIR 69 (651) T ss_pred CCCccceeeeeEEEeecccccccccccccccccc-hhhhcccCCCCC-CCC---------CHHHHHHHHhcChHHHHHHH Confidence 0011111100011110 0000 011111111 123343332111 110 11111111224688899999 Q ss_pred HHHhhhhccCeeecC------Cc---hhHHHHHHHHHh---------------cCHHHHHHHHHHHHHhCCeEEEEEEeC Q lcl|Aclame:pro 88 QKVGYSVGNPIVFNA------DD---DNLTKLLNDLLG---------------EEFDDTITELYLNASNKGVEWLHPYIN 143 (479) Q Consensus 88 ~~a~~l~g~~~~~~~------~~---~~~~~~~~~~~~---------------n~~~~~~~~~~~~~~~~G~~~~~v~~d 143 (479) ..+..+.|-|+.+.. ++ +....+++.|.. ..+......+..+...+|.+|+-+..+ T Consensus 70 ~~~~~iag~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn 149 (651) T protein:vir:99 70 KKSRYEVGFGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTD 149 (651) T ss_pred HHhhhhhccCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhc Confidence 999999999876532 11 112223333322 123455556667778889988888777 Q ss_pred CCCce-EEEEEccceeEEEEcCCCCCceEEEE---------------EEEeeecccCceEEEEEEEeCC--cEEEEEEcC Q lcl|Aclame:pro 144 RKGEF-KYVIIPAEEAIPIWDSKRQRELVAFI---------------RFYYIEDIDGNKIKRVEYYTEN--DITYFIERG 205 (479) Q Consensus 144 ~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i---------------~~~~~~~~~~~~~~~~~~y~~~--~i~~~~~~~ 205 (479) ..|.+ .+..++|..+-..-+..........+ +++.. ..+ ...++.+|... .+....... T Consensus 150 ~~g~pv~L~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~--~~~-~~~~~~~~g~~~~~~~~~~~~~ 226 (651) T protein:vir:99 150 IEGRPVGLAYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQI--RNG-NRRYFGEAGDRYRGQEVVIDES 226 (651) T ss_pred CccchhhhhhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHH--Hhc-CcceEEEeeccccceeeeeccC Confidence 66653 23334443321111100000000000 00000 000 00011111100 000000000 Q ss_pred Cccccc-ccccccccccc----ccccccccccccccccccc---eEEecC-----CCCCCchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 206 NSFIQE-FLYDEYGKMTD----IQEGHFRINNKEQGWGKVP---FIPFKN-----NEKCVSDLTFYKSLIDIYDNNISTL 272 (479) Q Consensus 206 ~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~g~vP---vv~~~n-----~~~g~s~~~~v~~lid~~~~~~s~~ 272 (479) ...... ...+....... ...+... .........+| |++|++ ...|+|.+..+...+........-. T Consensus 227 ~~~v~~~~~~d~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i~~a~~a~~~~ 305 (651) T protein:vir:99 227 GDEPTIRYREDEESEREPIFVDRETGDVT-TGDANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTISADEAAKDYN 305 (651) T ss_pred CcceeEEeccCcceeeeeecccceeeeEE-EcCCCceeEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHH Confidence 000000 00000000000 0000000 00000111122 455542 2357888887777776655555555 Q ss_pred HHHHHHhccceeeeecCCccchhhHHHH----h-----hcccceecCC---------CCcceeeecCC---CHHHHHHHH Q lcl|Aclame:pro 273 ADNLDEIQEVIYVLKEYPGTSLQEFIDN----I-----RYYKSIKVDG---------GGGVDKLEINI---PVEAKKELL 331 (479) Q Consensus 273 ~~~~~~~~~p~l~~~g~~~~~~~~~~~~----~-----~~~~~~~~~~---------~~~~~~~~~~~---~~~~~~~~~ 331 (479) .+.+...+.|-.++.--+....++.... + ..++++.+.. +.+++|...+. ....+.+.. T Consensus 306 ~~~f~NG~~p~gil~~~~~~ls~e~~~~lr~~~~~~~~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r 385 (651) T protein:vir:99 306 RDFFDNDTIPRMVIKVTGGELSEESKRDLRQMLNGLREESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFR 385 (651) T ss_pred HHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHHhccCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHH Confidence 5555666667666542112112221111 1 1223333332 23556655442 234567777 Q ss_pred HHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCccccceeeE Q lcl|Aclame:pro 332 DRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG---NKSYDYKTVQI 408 (479) Q Consensus 332 ~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~---~~~~~~~~i~i 408 (479) +.....|...-+.|+.-.+.....+...++.... ..+...|.-+++.+...+...- ........+.+ T Consensus 386 ~~~~~eIa~afgVPp~~lG~~~~~~~sn~E~~~~----------~f~~~tL~P~~~~ie~eln~kLl~~~e~~~~~~i~~ 455 (651) T protein:vir:99 386 EKNEHEIAKVLEVPPVKIGVTDSANRSNSDQQDK----------DFALEVIQPEQHTFAEWLYQIIHQQALGVTDWTIEY 455 (651) T ss_pred HHHHHHHHHHhCCCHHHhccCCCCCcccHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhcCccccccCceEEE Confidence 7788888888788865444322222111111111 1122222222232222222110 00111123445 Q ss_pred Ee--CCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHH--HHHHHHHHHHHHHHhhhhccCCCCCCC-cCCC Q lcl|Aclame:pro 409 TF--NHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVN--DELERLKKQEDTQKEYDDLIPNNQDGV-IDET 479 (479) Q Consensus 409 ~f--~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~--~El~~i~~E~~~~~~~~~~~~~~~~~~-~det 479 (479) .| ...+..|..+.++.+.++ .|+++.-.++++++. +.++. .-+..+..... .+......+...+. .+++ T Consensus 456 ef~~~~llr~D~~~~~e~~~~~i~~G~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~--g~~~~gge~~~~~~~~~~~ 533 (651) T protein:vir:99 456 ELRGADQPKQEAQLAEQRVRAMRLAGVGLVDEAREELGLDPLGEPYGEMTLSEFEAEVA--GDVAGGGETEAVHEPPEEN 533 (651) T ss_pred EeccchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCccccccccccccccc--cccccCCCCcccccCcccc Confidence 55 445557888888888775 589999999988754 22211 11111110000 00000000000000 0111 No 229 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=94.58 E-value=0.004 Score=33.72 Aligned_cols=361 Identities=12% Similarity=0.062 Sum_probs=154.6 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQ 88 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~ 88 (479) |.++ ..+.....+ ....-......+-+...... ... ....-+..+-....|+. T Consensus 1 MGl~-------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~v-t~~~al~~~~v~~~i~~ 53 (394) T protein:vir:62 1 MGLR-------------DRFSNYLFK-KAEKRGYLDNVLGKSIRYSG------------VYV-TDSNILQSSDVYELLQD 53 (394) T ss_pred Cchh-------------hhhhhhccC-CCCchhhhhhhhhcccccCc------------ccc-ChhhhhccHHHHHHHHH Confidence 2222 111111000 00000011112211110000 000 00011233556677888 Q ss_pred HHhhhhccCeeecCC-chhHH-HHHHHHH-h-cC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEE Q lcl|Aclame:pro 89 KVGYSVGNPIVFNAD-DDNLT-KLLNDLL-G-EE---FDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPI 161 (479) Q Consensus 89 ~a~~l~g~~~~~~~~-~~~~~-~~~~~~~-~-n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~ 161 (479) +++-+..-|+.+-.. .+... ...-.++ . |. ...+...++..++.+|.+|+.+..+..+ . +..+.+. T Consensus 54 Ia~~iA~lp~~v~~~~g~~~~~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~-----~--~~~~~~~ 126 (394) T protein:vir:62 54 ISNQMVLADIVVEDEFGNEIKDDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQIH-----L--ASNVFTE 126 (394) T ss_pred HHHhhcccceEEEcCCCcccchhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecceee-----c--cccceEE Confidence 888888888875322 12111 1111222 2 32 3455667888999999999987432211 1 2223333 Q ss_pred EcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 162 WDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVP 241 (479) Q Consensus 162 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vP 241 (479) .++.. ..+|. ..+. .+.++.+.+++. .+ T Consensus 127 ~~~~~-------~~~~~---~~~~------~~~~~eiih~r~------------------------------------~~ 154 (394) T protein:vir:62 127 LDDNL-------VEHFN---IGGH------EIPPCMIRHVKN------------------------------------IG 154 (394) T ss_pred ECCce-------EEEEe---eCCE------EechhheEEecC------------------------------------cC Confidence 32210 00111 0000 011111111110 00 Q ss_pred eEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeee--cCCccch---hhHHHH--------hhccccee Q lcl|Aclame:pro 242 FIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLK--EYPGTSL---QEFIDN--------IRYYKSIK 308 (479) Q Consensus 242 vv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~--g~~~~~~---~~~~~~--------~~~~~~~~ 308 (479) .+...|.|.+..+...+.............+...+.|-.+++ +...... +.+... ...+++.. T Consensus 155 ----~d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~v 230 (394) T protein:vir:62 155 ----ADHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSKLINAILDQLESIDEARSVKM 230 (394) T ss_pred ----CCCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHHHHHHHHHHhccccccCceeE Confidence 012247777777776666665555555555566667755554 3211111 111111 11234455 Q ss_pred cCCCCcceeeecCCC--HHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 VDGGGGVDKLEINIP--VEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELL 386 (479) Q Consensus 309 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~ 386 (479) ++.+.+.++.....+ ...+.+..+.....|...-++|+.-.+.....+.+.. ....+...|.-++ T Consensus 231 l~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~sn~e~~-------------~~~~~~~~l~P~~ 297 (394) T protein:vir:62 231 IPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTELIKEDIEKA-------------MMYIHNKAVRPIM 297 (394) T ss_pred eeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcCHHHH-------------HHHHHHHHHHHHH Confidence 667777777655443 3446666677777887777777655443222221111 1122223333333 Q ss_pred HHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHH-H------HHHHH Q lcl|Aclame:pro 387 WFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDVND-E------LERLK 455 (479) Q Consensus 387 ~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~~~-E------l~~i~ 455 (479) +.+...+...--.......+.+.|+.....+..+.++++.++ +|+++...++++++.- +++.. + +..+. T Consensus 298 ~~ie~~l~~kll~~~~~~~~~~~fd~~~~~~~~~~~~~~~~~~~~g~~T~NE~R~~~gl~p~~~~~gd~~~~~~n~~~~~ 377 (394) T protein:vir:62 298 KNFEDHLSLLFYAQNSGKRIKFKINILDFVTYSNKTNIGYNLVRTAITSPDNVADMLGFPKQNTKESQAIYISNDVTEIG 377 (394) T ss_pred HHHHHHHhhhhcCccccCceEEEechhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeccccccccc Confidence 333333222111111223567888777767777778888776 5789999999887543 22211 1 11111 Q ss_pred HHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 456 KQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 456 ~E~~~~~~~~~~~~~~~~~~~det 479 (479) +. ........+|+.+|- T Consensus 378 ~~-------~~~~~~~kgge~~en 394 (394) T protein:vir:62 378 KK-------EATDGSLGGGEENEN 394 (394) T ss_pred cc-------ccccccCCCCCCCCC Confidence 10 011111122222222 No 230 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=94.13 E-value=0.0053 Score=33.06 Aligned_cols=406 Identities=12% Similarity=0.111 Sum_probs=149.2 Q ss_pred CCCcccCcHHHHHHHH-hccC--hHHHHHHHHH---HHHHhh-HHHHHHHHHHhcc--CCcccccccccccccccccccc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQL-KKES--TINLVKVIEH---YILKHR-PEKYKQGEEYYYG--NTDVNNKRRYYLLDGAKVDDFT 71 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~i~~---~~~~~~-~~~~~~~~~yy~g--~~~~~~~~~~~~~~~~~~~~~~ 71 (479) |.++=.- .+.+.-.. ..+. ...++-.+.- +..... ...+..+.++.++ ++++.+ T Consensus 35 ~~~~~~~-~~~~~~~~~~~~~a~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~npiv~---------------- 97 (576) T protein:vir:96 35 IRNIEEK-SKELNKSLYGKQQAYAEPFLEVMDTNPEFRTKRSYMKNSDNLHDVLKQFGNNPILN---------------- 97 (576) T ss_pred HHHhhhh-hhhhccccCCccchhhcceeeeeecCCCccccCcchhhhhhhHHHHHHhhcCHHHH---------------- Confidence 1111000 00000000 0000 0000000000 000000 0000000011000 011111 Q ss_pred cCcceeecchHHHHHHHHHhhhh---------ccCeee-----cCCchhHHH--HHHHHH------h----cCHHHHHHH Q lcl|Aclame:pro 72 KVNNKAINNYHKLLVDQKVGYSV---------GNPIVF-----NADDDNLTK--LLNDLL------G----EEFDDTITE 125 (479) Q Consensus 72 ~~~~ri~~n~~~~iv~~~a~~l~---------g~~~~~-----~~~~~~~~~--~~~~~~------~----n~~~~~~~~ 125 (479) .-.+.|.+.+|.|.+ +=++.. ...+....+ .+..+. . ..+..+... T Consensus 98 --------~~I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~ 169 (576) T protein:vir:96 98 --------AIILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRK 169 (576) T ss_pred --------HHHHHHHHHHHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHHHHHH Confidence 001112222221110 000000 000011000 001000 0 134556677 Q ss_pred HHHHHHhCCeEEEEEEeCCC--Cce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEE Q lcl|Aclame:pro 126 LYLNASNKGVEWLHPYINRK--GEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFI 202 (479) Q Consensus 126 ~~~~~~~~G~~~~~v~~d~~--~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~ 202 (479) +..+.+.+|.+|+.+..+.+ |++ .+..++|..+.++.+.... ......+++.. .++. ....+..+.+.+++ T Consensus 170 lv~dlll~Gna~~~i~~~rd~~g~~~~L~pl~p~~V~v~~~~dg~-~~~~~~~~~~~--~~~~---~~~~~~~~dii~~~ 243 (576) T protein:vir:96 170 IVRDTYTYDQVNFEKVFNKKNATTMDKFIAVDPSTIFYATDKNGK-IIKGGKRFVQV--INKK---VVASFTSREMAMGI 243 (576) T ss_pred HHHHHHhcCCeEEEEEEecCCCCceEEEEEeCCceeEEEECCCCc-eeeeeeEEEEe--cCCc---eEEEecccceEEEe Confidence 88899999999998876655 444 5888999999887766421 11111222111 1111 11122233332222 Q ss_pred EcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 203 ERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEV 282 (479) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p 282 (479) .... .-......|.|.+..+...+...........+.+.-.+.| T Consensus 244 ~~~~------------------------------------~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~Ng~~p 287 (576) T protein:vir:96 244 RNPR------------------------------------TELSSSGYGLSEVEIAMKQFIAYNNTETFNDRFFSHGGTT 287 (576) T ss_pred ecCC------------------------------------CCcccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 1100 0000113477777777777766666555555556666666 Q ss_pred eeee--ecCCccchh---hHHHHh--------hccc-ceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCc Q lcl|Aclame:pro 283 IYVL--KEYPGTSLQ---EFIDNI--------RYYK-SIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPE 348 (479) Q Consensus 283 ~l~~--~g~~~~~~~---~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~ 348 (479) -.++ ++......+ .+...+ ..++ .+.++++.+.+.++.+.....+.+..+...+.|...-++|+.- T Consensus 288 ~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl~~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp~~ 367 (576) T protein:vir:96 288 RGILQIKSEQQQSQRALENFKREWKSSFSGINGSWQVPVVMADDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDPAE 367 (576) T ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCHHH Confidence 5444 342211111 111111 1122 2455666566666555556677888888888998888888654 Q ss_pred cccc--ccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHH Q lcl|Aclame:pro 349 SQNT--GDKSG----VALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKI 422 (479) Q Consensus 349 ~~~~--g~~Sg----~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a 422 (479) .+.. ++.+| .++.. +.. -+.....+...|.-+++.+...+...-.... ...+.+.|.+.-+.+..+.. T Consensus 368 lG~~~~~~~~g~~~~~s~t~--sn~---e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~-~~~~~~~f~r~d~~~~~e~~ 441 (576) T protein:vir:96 368 IGFPNRGGATGGKGGNTLNE--ADP---GKKQQQSQNKGLQPLLRFIEDLINTHIISEY-SDKYVFQFVGGDTKSELDKI 441 (576) T ss_pred cccccccccccccccccccc--ccH---HHHHHHHHHHHHHHHHHHHHHHHHhhhchhc-cCceEEEeccCCHHHHHHHH Confidence 4321 11111 11000 000 0111122222333333322222221100011 12356667766666565555 Q ss_pred HHHHH-HhccCChHHHHHhCCCC--CCHHHH-----HHHHHH--------HHHHHHhhhhc----cCCCCCCCcCCC Q lcl|Aclame:pro 423 DMAAK-STGIVSDETIVSNHPWV--EDVNDE-----LERLKK--------QEDTQKEYDDL----IPNNQDGVIDET 479 (479) Q Consensus 423 ~~~~k-~~g~is~et~~~~l~~~--~d~~~E-----l~~i~~--------E~~~~~~~~~~----~~~~~~~~~det 479 (479) +.... .+|+++.-.++++++.- ++-+.- +..+.+ .+.++...... ..+.......++ T Consensus 442 ~~~~~~~~G~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s 518 (576) T protein:vir:96 442 KILQEEVKTYKTVNEARKEKGLKPIEGGDVLLDGSFIQSMSLNTQKEQYEDTKQKERFDMIQQFLNSPDDEEPQQES 518 (576) T ss_pred HHHHHHhcCccCHHHHHHHhCCCCCCCcceeccccccccccccccCCCCCCccccccccccccccCCCCCCCCCCCC Confidence 44332 25899998888876442 110000 000000 00000000000 000000000001 No 231 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=92.82 E-value=0.0099 Score=31.58 Aligned_cols=372 Identities=8% Similarity=-0.051 Sum_probs=152.5 Q ss_pred CCcccccccccccccccc-cccccCcceeecchHHHHHHHHHhhhhccCeeecCCch---hHHHHHHHHHh--cC---HH Q lcl|Aclame:pro 50 NTDVNNKRRYYLLDGAKV-DDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDD---NLTKLLNDLLG--EE---FD 120 (479) Q Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~---~~~~~~~~~~~--n~---~~ 120 (479) -..++...-......... .... ...-...+.....|+.+++-+.+-|+.+--.+. ....+...+.. |. .. T Consensus 1 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~~~~~~~~~l~~lL~~~PN~~~t~~ 79 (723) T protein:vir:94 1 MTTFPSGAGGWNAWSADSVFGNG-AKGWSNSAVAYRCISMLANNAASVDLVVRGPDGELDELHPLSQLWNVMPNRAMPAQ 79 (723) T ss_pred CcccccCCCcccccccccccccc-HHHHhhhHHHHHHHHHHHHhhccceeEEEcCCCccchhhHHHHHHhhCCCCCCCHH Confidence 111110000000000000 0000 000012233345567777777677776532221 11223333332 32 34 Q ss_pred HHHHHHHHHHHhCCeEEEEEEeCC---CCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCC Q lcl|Aclame:pro 121 DTITELYLNASNKGVEWLHPYINR---KGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTEN 196 (479) Q Consensus 121 ~~~~~~~~~~~~~G~~~~~v~~d~---~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~ 196 (479) .+...+...++.+|.+|+.+..+. .|.| .+..++|..+.++.......-.......|.....+|.. ..+..+ T Consensus 80 ~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~G~~----~~~~~~ 155 (723) T protein:vir:94 80 VLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQAQIIGYVIERTDGVR----VPVLAD 155 (723) T ss_pred HHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccceeeeeeEEEEEecCcee----EEeccc Confidence 455566778889999999987643 2444 46667776665544333211111111112211111110 011122 Q ss_pred cEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 197 DITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNL 276 (479) Q Consensus 197 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~ 276 (479) .+.+++. .++ .+...|.|.+..+...+.............+ T Consensus 156 dIiHir~------------------------------~~~---------~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f 196 (723) T protein:vir:94 156 EMLWLRF------------------------------SDP---------YDPLAVMAPWKAARAAVDADFYAATWQRQSF 196 (723) T ss_pred ceEEecC------------------------------CCC---------CCCcccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 2222110 000 1223578877776666665554444444555 Q ss_pred HHhccceeeeecCCccchhh---HHHHh--------hcccceecCC--------CCcceeeecCCCH--HHHHHHHHHHH Q lcl|Aclame:pro 277 DEIQEVIYVLKEYPGTSLQE---FIDNI--------RYYKSIKVDG--------GGGVDKLEINIPV--EAKKELLDRLE 335 (479) Q Consensus 277 ~~~~~p~l~~~g~~~~~~~~---~~~~~--------~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~l~ 335 (479) ...+.|-.++.. +..+.+. ....+ ..++.+.+++ +.+.+|.....+. ..+.+..+... T Consensus 197 ~NG~~p~giL~~-~~l~~e~~~~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~ 275 (723) T protein:vir:94 197 KNGARPGGVVNL-GDMDEQTFTKTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSA 275 (723) T ss_pred hcCCCcceEEEc-CCCCHHHHHHHHHHHHHHhhchhhcCcceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhH Confidence 556667666653 2222111 11111 1233444432 1245555544443 44666666777 Q ss_pred HHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCC--C Q lcl|Aclame:pro 336 KNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNH--S 413 (479) Q Consensus 336 ~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~--~ 413 (479) ..|...-+.|+...+..+ +...+...... .+...|.-.++.|...+...-.... ...+.+.|+. . T Consensus 276 ~eIa~afgVPp~~i~~~s--t~sN~e~~~~~----------f~~~tL~P~~~~ie~~ln~~Ll~~~-g~~~~~~f~~~~l 342 (723) T protein:vir:94 276 EEVMLAFGIRKDALLGGS--TYENQAEAKAA----------VWTETLIPQMEVMASITDLQLLPDI-GWTVEWDFNSVPA 342 (723) T ss_pred HHHHHHhCCChhHcCCCC--CcccHHHHHHH----------HHHHHHHHHHHHHHHHHhHhhcccc-cCceEEeecchhh Confidence 778777787764332221 11111111111 1222233233333322221111111 1245677764 4 Q ss_pred CCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHH----------------------H-HHHHHH--HHHHHHhh Q lcl|Aclame:pro 414 MIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVND----------------------E-LERLKK--QEDTQKEY 464 (479) Q Consensus 414 ~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~----------------------E-l~~i~~--E~~~~~~~ 464 (479) +..|..+.++.+.++ .|+++.-.++++++. +.+-+. | -.|+.+ ++.+.... T Consensus 343 Lr~D~~~r~~~~~~~v~~G~~T~NE~R~~lglpPi~gGd~~~~~~p~~~~~a~~~~~~p~~~e~~~~~~~~~~~~~~~~p 422 (723) T protein:vir:94 343 LQEDLEAQAGRNQGYLVNDVLMVDEVRATIGLDPLPGGIGQMTLTPYRAQFAPAPAPAPAVEEGAARMLALLERVAADRP 422 (723) T ss_pred hhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccceeccccccccCCCCCCccchhhhHhhhhhccccccccC Confidence 567888889888875 589999888877643 211110 0 011111 00000000 Q ss_pred hhccC--------CCCCCCcCCC Q lcl|Aclame:pro 465 DDLIP--------NNQDGVIDET 479 (479) Q Consensus 465 ~~~~~--------~~~~~~~det 479 (479) ....+ ...+...++| T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~ 445 (723) T protein:vir:94 423 LPELPVRATTVLHHDPGPDPQQT 445 (723) T ss_pred cCCCCCCCCCCCCCCcccCCchh Confidence 00000 1111222333 No 232 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=92.58 E-value=0.011 Score=31.36 Aligned_cols=360 Identities=11% Similarity=0.014 Sum_probs=150.7 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccc------------------cccCcce--eecch Q lcl|Aclame:pro 22 INLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDD------------------FTKVNNK--AINNY 81 (479) Q Consensus 22 ~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~------------------~~~~~~r--i~~n~ 81 (479) .-+..-+.-.-.-...+.-.-..+|..|+.++............+... ......+ +.++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~ 80 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSWGSAQDKLRTLIDV 80 (409) T ss_pred CchhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccccCccccchhhHhhhHH Confidence 111111110000001111122334555544432211111000000000 0000000 11233 Q ss_pred HHHHHHHHHhhhhccCeeecCCchhHHHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEE-EEeCCCCce-EEEEEc Q lcl|Aclame:pro 82 HKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLL--GEE---FDDTITELYLNASNKGVEWLH-PYINRKGEF-KYVIIP 154 (479) Q Consensus 82 ~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~-v~~d~~~~~-~i~~~~ 154 (479) ....|+.+++-+.+-|+.+--.....+.....+. -|. ...+...++... .+|.+|+. +..+.+|.+ .+..++ T Consensus 81 v~acV~~Ia~~iA~lpl~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~l~~~l-llGnay~~~i~r~~~G~~~~L~pl~ 159 (409) T protein:vir:83 81 AWACIDLNASVLSSMPIYRMRNGRIIDSVAWMSNPDPEVYTSWQEFAKQLFWDF-QLGEAFVLPMAHGSDGYPIRFRVVP 159 (409) T ss_pred HHHHHHHHHHhhccCceEEeeCCccccchhhhcccCCCCCCCHHHHHHHHHHHH-hhCCcEEEEEEECCCCcEEEEEEEC Confidence 4456777777777777764322222222211121 132 223333444444 45888876 557888876 578889 Q ss_pred cceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 155 AEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKE 234 (479) Q Consensus 155 p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (479) |..+.+..+... ...|.+.. .+.++ T Consensus 160 p~~v~v~~~~~g-------~~~y~~~~----------~~~~~-------------------------------------- 184 (409) T protein:vir:83 160 PWLVNVELKKGA-------RREYRIGG----------LNVTD-------------------------------------- 184 (409) T ss_pred CcceEEEEcCCc-------eEEEEEcc----------ccCcc-------------------------------------- Confidence 988876655431 11121100 00111 Q ss_pred ccccccceEEec-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHH----HHh---- Q lcl|Aclame:pro 235 QGWGKVPFIPFK-----NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFI----DNI---- 301 (479) Q Consensus 235 ~~~g~vPvv~~~-----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~----~~~---- 301 (479) .|++++ +...|.|.++.+...++..+....-..+.+...+.|..++.... ...++.. ..+ T Consensus 185 ------eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f~nga~p~gil~~~~-~ls~e~~~~~~~~~~~~~ 257 (409) T protein:vir:83 185 ------EILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKYVQNLAETGGVPLYWLGVER-RLSETEAVDLMDRWIESR 257 (409) T ss_pred ------ceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEeecCC-CCCHHHHHHHHHHHHHhh Confidence 122222 12357888887777777666555555555566667777665332 2222221 111 Q ss_pred --hcccceecCCCCcc-eeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc---ccHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 --RYYKSIKVDGGGGV-DKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD---KSGVALKFLYSLLDLKCSKTE 375 (479) Q Consensus 302 --~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~---~Sg~Ai~~~~~~l~~k~~~~~ 375 (479) ..++.+.+.++.+. +.+..+.....+.+..+.....|...-++|++-.+..+. .+-..++....... T Consensus 258 ~~nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~llg~~~~~~~~tysn~eq~~~~f~------- 330 (409) T protein:vir:83 258 SKYAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPPFLVGLPGATGSLTYSNIEQLFSFHD------- 330 (409) T ss_pred CCccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHHccCCCCccccccccHHHHHHHHH------- Confidence 11223344444433 223322223345566666777888877888655442211 11111221111111 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHH Q lcl|Aclame:pro 376 KKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELER 453 (479) Q Consensus 376 ~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~~El~~ 453 (479) ...|.-.++.|...+...--. ....+++.+...+-.|.++.++++.++ +|+++.-.++++++.-. . T Consensus 331 ---~~tL~P~~~~ie~~l~~~Ll~--~~~~~~f~~~~llr~d~~~r~~~~~~~~~~G~lT~NE~R~~~glpp--~----- 398 (409) T protein:vir:83 331 ---RSSLRPKATAVMAALDRWALP--SPQHLELNRDDYTRPSLVERATAYKIMIEAGVMEPNEARAMERLHS--E----- 398 (409) T ss_pred ---HHHHHHHHHHHHHHHHHhhCC--CCcEEEeehhhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC--C----- Confidence 111111111111111110000 112456666677777888888888875 57888877776653210 0 Q ss_pred HHHHHHHHHhhhhccCC-CCCCC Q lcl|Aclame:pro 454 LKKQEDTQKEYDDLIPN-NQDGV 475 (479) Q Consensus 454 i~~E~~~~~~~~~~~~~-~~~~~ 475 (479) +.... ..+|+ T Consensus 399 ------------~ggd~l~~~gv 409 (409) T protein:vir:83 399 ------------AAAVRLSGGGV 409 (409) T ss_pred ------------CCCcccCCCCC Confidence 00000 00011 No 233 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=92.18 E-value=0.012 Score=31.02 Aligned_cols=365 Identities=9% Similarity=0.019 Sum_probs=147.6 Q ss_pred ccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccC Q lcl|Aclame:pro 18 KESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNP 97 (479) Q Consensus 18 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~ 97 (479) .....|+.+.+.- .++. +.++ .++-.+. +. .......+-....-...-|+.+|+-+..-| T Consensus 1 mg~~~~~~~~~~~---~~~~-----~~~~----~~~~~~~-----~~---~~~~t~~~~~~~~~v~~cv~~Ia~~ia~~p 60 (403) T protein:vir:10 1 MGFKSWITEKLNP---GQRI-----IRDM----EPVSHRT-----NR---KPFTTGQAYSKIEILNRTANMVIDSAAECS 60 (403) T ss_pred Ccchhhhhhccch---hhhh-----hhcc----ccccccc-----CC---cccccHHHHHHHHHHHHHHHHHHHHHhhCc Confidence 2222333222210 0011 1111 0000000 00 000000000011222234555666666666 Q ss_pred eeecC-----Cc--h-hHHHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcC Q lcl|Aclame:pro 98 IVFNA-----DD--D-NLTKLLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDS 164 (479) Q Consensus 98 ~~~~~-----~~--~-~~~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~ 164 (479) +++.. .+ . ....+...+. -|. ...+...++..++.+|.+|+.+.. + .+..++|..+.+..+. T Consensus 61 ~~v~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~--~---~l~~l~~~~~~v~~~~ 135 (403) T protein:vir:10 61 YTVGDKYNIVTYANGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDG--T---SLYHVPAALMQVEADA 135 (403) T ss_pred eeEeecccccccccccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeC--c---eeEeecCcceEEEEcC Confidence 65421 11 1 1111222222 132 235556678888899999976521 1 2455666665543332 Q ss_pred CCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEE Q lcl|Aclame:pro 165 KRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIP 244 (479) Q Consensus 165 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~ 244 (479) . .. +..+.. ..+ ..|..+.+.++. ...+++ T Consensus 136 ~---~~---~~~~~~--~~~------~~~~~~eiih~~------------------------------------~~~~~~ 165 (403) T protein:vir:10 136 N---KF---IKKFIF--NNQ------INYRVDEIIFIK------------------------------------DNSYVC 165 (403) T ss_pred C---ce---EEEEEe--cCc------eeecccceEEec------------------------------------cccccc Confidence 1 11 111110 000 001111111111 000111 Q ss_pred -ecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHH----Hh--------hcccceecCC Q lcl|Aclame:pro 245 -FKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFID----NI--------RYYKSIKVDG 311 (479) Q Consensus 245 -~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~----~~--------~~~~~~~~~~ 311 (479) ..+...|.|.+..+...++.......-..+.+...+.|-.+++..... .++... .+ ..++++.+++ T Consensus 166 ~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l-~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~ 244 (403) T protein:vir:10 166 GTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLILETDEIL-NKKLRERKQEELQLDYNPSTGQSSVLILDG 244 (403) T ss_pred CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC-CHHHHHHHHHHHHHHhCCcccCcceeecCC Confidence 113345778887777777777666655566666666776666543222 222111 11 1133556666 Q ss_pred CCcceeeecCCC--HHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 GGGVDKLEINIP--VEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFV 389 (479) Q Consensus 312 ~~~~~~~~~~~~--~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li 389 (479) +.+.+.+..... ...+.+..+.....|+..-+.|+.-.+.....+.+.. ....+...|.-.++.| T Consensus 245 g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~sn~e~~-------------~~~f~~~tl~P~~~~i 311 (403) T protein:vir:10 245 GMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDGGNNANIRPN-------------IELFYYMTIIPMLNKL 311 (403) T ss_pred CceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcCHHHH-------------HHHHHHHHHHHHHHHH Confidence 666666654333 2345666667777887777777655432222221111 1112222232222222 Q ss_pred HHHHHhcCCCccccceeeEEeCC--CCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHH--HHHHHHHh Q lcl|Aclame:pro 390 CEYLKISGNKSYDYKTVQITFNH--SMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELERLK--KQEDTQKE 463 (479) Q Consensus 390 ~~~~~~~~~~~~~~~~i~i~f~~--~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~d~~~El~~i~--~E~~~~~~ 463 (479) ...+...-+ ..+.+.+.. .+..|..+.++++.++ .|+++.-.++++++.-.-+++.....- ...+ . T Consensus 312 e~~l~~~L~-----~~~~~d~~~~~~l~~D~~~~~~~~~~~~~~G~lT~NE~R~~~gl~pi~~~~~d~~~~p~n~~---~ 383 (403) T protein:vir:10 312 TSSLTFFFG-----YKITPNTKEVAALTPDKEAEAKHLTSLVNNGIITGNEARSELNLEPLDDEQMNKIRIPANVA---G 383 (403) T ss_pred HHHHHHhcC-----ceeeeccchhhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCcccccccccccccc---c Confidence 222222111 123333332 2455777888888776 589999999988765321111111111 1100 0 Q ss_pred hhhccCCCCCCCcCCC Q lcl|Aclame:pro 464 YDDLIPNNQDGVIDET 479 (479) Q Consensus 464 ~~~~~~~~~~~~~det 479 (479) ........+.+..+.+ T Consensus 384 ~~~~~~~~e~~~~~~~ 399 (403) T protein:vir:10 384 SATGVSGQEGGRPKGS 399 (403) T ss_pred ccccCCCCcCCCCCCC Confidence 0011111111111111 No 234 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=92.00 E-value=0.013 Score=30.87 Aligned_cols=392 Identities=13% Similarity=0.033 Sum_probs=161.3 Q ss_pred CcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccccccc--ccccccccccCcceeecchHHH Q lcl|Aclame:pro 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLL--DGAKVDDFTKVNNKAINNYHKL 84 (479) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~--~~~~~~~~~~~~~ri~~n~~~~ 84 (479) |.|+ ...--+-.+.+.+-. .........-|. + .|...+...... +........+ ......- T Consensus 1 ~~~~-----~~~~p~~~~~~~~~~-----~~~~~~~~~g~~-~-~D~~lr~~gg~~~~~~~l~~~m~e-----~D~~v~s 63 (446) T protein:vir:98 1 MNME-----VRNAPTPAIRRRTIY-----AMEHLGLATSYL-S-EDGGYKRAGKPTYQQLSAWDEAAQ-----TEPIIAQ 63 (446) T ss_pred Cccc-----ccCCCchhhhhhhhh-----ccccchhhcccC-C-cchHhhhcCCChHHHHHHHHHHHh-----cchHHHH Confidence 1111 111011111111110 000111111111 1 111111000000 0000000000 1244555 Q ss_pred HHHHHHhhhhccCeeecCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHhCCeE-EEEEEeCCCCc-eEEEE------Ecc Q lcl|Aclame:pro 85 LVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGE-EFDDTITELYLNASNKGVE-WLHPYINRKGE-FKYVI------IPA 155 (479) Q Consensus 85 iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n-~~~~~~~~~~~~~~~~G~~-~~~v~~d~~~~-~~i~~------~~p 155 (479) ...+....+.+-+.++.+.+++..+++..++.+ .+... .....++..||.+ ++.+|.-..|. ...++ ..| T Consensus 64 ~l~~Rk~av~~~~w~V~p~~~~~a~~v~~~l~~~~~~~~-~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~ 142 (446) T protein:vir:98 64 GLDSIALSVLNKVGPYQHGDKRIKKFIDDQLRNRAKTWI-SHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHP 142 (446) T ss_pred HHHHHHHHhhcCCceecCccHHHHHHHHHHHhhcCchhH-HHHHHHHHhhCceeeeEEEeecccccccchhhcccccccc Confidence 666777777888888888888777888877654 34443 3345788889985 55566543332 11111 122 Q ss_pred ceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEE--EEeCCcEEEEEEcCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 156 EEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVE--YYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNK 233 (479) Q Consensus 156 ~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479) ...--.++... .... +....... .........+... .... .. ....... T Consensus 143 ~~~r~~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--~~---~~~g~~~ 193 (446) T protein:vir:98 143 LQVMLIANDNG--RIVD-----------GDTVTASQYKSGYWVPLPPYRIG-----------DPPK--KV---DVVGSHV 193 (446) T ss_pred ccceeeeccCC--cccc-----------ccccchhhcccccccCcccchhh-----------hhhh--hc---ccCcccc Confidence 11111112111 0000 00000000 0000000000000 0000 00 0000011 Q ss_pred cccccccceEEec---CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh-------------- Q lcl|Aclame:pro 234 EQGWGKVPFIPFK---NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE-------------- 296 (479) Q Consensus 234 ~~~~g~vPvv~~~---n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~-------------- 296 (479) +-|..++=+..+. .+..|.|.+..+--.---=+..+.+++.-++.++.|+.+.+...+....+ T Consensus 194 ~iP~~kfi~~~~~~~~~~p~G~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~ 273 (446) T protein:vir:98 194 RLPSHKRLFINYNTKGNNPWGTSCLTSVLDYSIFKRAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIA 273 (446) T ss_pred cccccceEEEEecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHH Confidence 1122222222221 24568887776655444445667778888999999999877433221110 Q ss_pred --HHHHh---hccccee-----cCCCCcceeeecCCC-HHHHHHHHHHHHHHHHHHhCCCCCcccc--cccccHHHH-HH Q lcl|Aclame:pro 297 --FIDNI---RYYKSIK-----VDGGGGVDKLEINIP-VEAKKELLDRLEKNIIIFGQGVNPESQN--TGDKSGVAL-KF 362 (479) Q Consensus 297 --~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~i~~~s~~~~~~~~~--~g~~Sg~Ai-~~ 362 (479) ....+ ....... .+++..+++++...+ ...++.+++...+.|...-.+..++.+. .++-|. |+ .. T Consensus 274 ~~L~~av~~~~~da~~ii~~~~~P~g~eie~~ea~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~-ala~v 352 (446) T protein:vir:98 274 EQAEDALRRLSTDSGLVLTQLSKEQPVQVGALTTGNNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTG-RASEI 352 (446) T ss_pred HHHHHHHHhccccceeeeecccCCCCceEEeeccccCChhhHHHHHHHHHHHHHHHHhcccccccccccccchh-hhHHH Confidence 11111 1112222 267788899887644 3468889998888886644333333221 111111 11 11 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccc---eeeEEeCCCCCCCHHHHHHHHHHHh--cc-CC-- Q lcl|Aclame:pro 363 LYSLLDLKCSKTEKKFKKAIR-ELLWFVCEYLKISGNKSYDYK---TVQITFNHSMIINEAEKIDMAAKST--GI-VS-- 433 (479) Q Consensus 363 ~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~---~i~i~f~~~~p~d~~e~a~~~~k~~--g~-is-- 433 (479) ...-....+..-.+.+.+.+. ++++-++ ....+...... .-.+.|....+.|....++++.+++ |+ ++ T Consensus 353 h~~V~~d~~~aDa~~i~~tln~~Li~~l~---~lNf~~~~~~~~~~~~~~~~~~~e~eDl~~~a~~~~~L~~~G~~~p~~ 429 (446) T protein:vir:98 353 QLELFDGKINSIFDTVIHAFTEQVIGNLI---RLNFDPALYPLASNTGYITRLPGRATDLAALVEAIKQMHDMGFLVDGD 429 (446) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCccccccccccccceeccCChhhHHHHHHHHHHHHhCCcccccc Confidence 111111122333344444443 3444333 33222211111 1234566667889999999998874 54 44 Q ss_pred hHHHHHhCCCCC-CHHH Q lcl|Aclame:pro 434 DETIVSNHPWVE-DVND 449 (479) Q Consensus 434 ~et~~~~l~~~~-d~~~ 449 (479) .+.+.++++.-. ++.. T Consensus 430 ~~~ire~~giP~~~~~~ 446 (446) T protein:vir:98 430 KDHIRSITGLPDAISST 446 (446) T ss_pred HHHHHHHhCcCCCCCCC Confidence 445666665421 1122 No 235 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=91.82 E-value=0.014 Score=30.74 Aligned_cols=362 Identities=8% Similarity=-0.011 Sum_probs=132.5 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeec Q lcl|Aclame:pro 22 INLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFN 101 (479) Q Consensus 22 ~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~ 101 (479) ..|.+.+.....+. ............... ... ....-+...-....|+.+++-+..-|+.+- T Consensus 1 Mg~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~--~~~-~~~~~l~~~~v~~~v~~Ia~~ia~~p~~~~ 62 (395) T protein:vir:40 1 MGFKSWVSGFFNEE---------------QRTLNLTDTVWCSIP--SEK-LKELSIKKWAIDSCANKIANTLSCAEVLTY 62 (395) T ss_pred CchHHHHHhhhccc---------------ccccccccchhhccc--ccc-chhhhhhhHHHHHHHHHHHHHHhhCceeec Confidence 22233332221110 000000000000000 000 000001223345567777777777777754 Q ss_pred CCchhHHH-HHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEE Q lcl|Aclame:pro 102 ADDDNLTK-LLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIR 175 (479) Q Consensus 102 ~~~~~~~~-~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~ 175 (479) -.++.... +...+. -|. ...+...+...++.+|.+|+.+..+. +. .|..+...... ..-.+ T Consensus 63 ~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~---~~----~~~~~~~~~~~------~~~~~ 129 (395) T protein:vir:40 63 EKGEEVRKKNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEY---IY----VADSFTKNDKS------LYENT 129 (395) T ss_pred cCCccccchHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCc---ee----ecCCccccccc------cccce Confidence 33332222 222222 232 34455667888899999997765432 11 11111110000 00000 Q ss_pred EEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchH Q lcl|Aclame:pro 176 FYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDL 255 (479) Q Consensus 176 ~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~ 255 (479) +..+ ..++ +.....|.++.+.+++. ++..+.+.. T Consensus 130 ~~~v-~~~~--~~~~~~~~~~evih~r~-------------------------------------------~~~~~~~~~ 163 (395) T protein:vir:40 130 YTEV-TLKD--LTLKKEFKESEVLHLTL-------------------------------------------NNESIKSII 163 (395) T ss_pred eeee-eecC--ceeeeeeccccEEEeec-------------------------------------------CCCCccccc Confidence 0000 0011 00111122233333211 111122212 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hccceeeeecCCccchhh-------HHHH-----hhcccceecCCCCcceeeecC Q lcl|Aclame:pro 256 TFYKSLIDIYDNNISTLADNLDE--IQEVIYVLKEYPGTSLQE-------FIDN-----IRYYKSIKVDGGGGVDKLEIN 321 (479) Q Consensus 256 ~~v~~lid~~~~~~s~~~~~~~~--~~~p~l~~~g~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~~~~ 321 (479) .. +...+....+...+...+ ...+.+++........+. +... ...++++.++++.+++.+..+ T Consensus 164 ~~---l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~ 240 (395) T protein:vir:40 164 DG---FYLLYGDLLTAAVNKYKKLNSRKIIVKLKAMFGQTPEAEEKLRLMLSERMKKFLAEGDSALPVEDGMEIDELAGD 240 (395) T ss_pred hh---HHHHHHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHHHHhhccCCceeecCCCceEEeccCC Confidence 11 222222222232233332 233555554322221111 1111 112334556666665555544 Q ss_pred CCHHHHHHHH---HHHHHHHHHHhCCCCCcccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 322 IPVEAKKELL---DRLEKNIIIFGQGVNPESQN-TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISG 397 (479) Q Consensus 322 ~~~~~~~~~~---~~l~~~i~~~s~~~~~~~~~-~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~ 397 (479) .....+.+.. +.+.+.|...-++|+.-.++ .+|.+.. ....+...|.-.++.|..-+...- T Consensus 241 ~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~~~~sn~e~~---------------~~~f~~~~L~P~~~~ie~~l~~kL 305 (395) T protein:vir:40 241 SKIAESRDIKKMIDDVFEMVANSFNIPLGLAKGDTVGLSEQ---------------VNSFLMFSINPIAEMFTDEGNRKF 305 (395) T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCCcCHHHH---------------HHHHHHHHHHHHHHHHHHHHHHhc Confidence 4433333322 33345666666666543321 1121111 122333444444444443333211 Q ss_pred CCc---cccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHhhhhccCC Q lcl|Aclame:pro 398 NKS---YDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVNDELERLKKQEDTQKEYDDLIPN 470 (479) Q Consensus 398 ~~~---~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~El~~i~~E~~~~~~~~~~~~~ 470 (479) -.. .....+++.+...+..|..+.++++.++ .|+++.-.++++++. ++++....-.+-.--.......+...+ T Consensus 306 l~~~~~~~g~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~~~kg 385 (395) T protein:vir:40 306 YGRDSVLERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMIGREPVMSPETQERFVTKNYAPLGENEEDLKG 385 (395) T ss_pred CChhhhcCCceEEEechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCC Confidence 111 1123456666777788999999998886 578999999988754 222221100000000000001111111 Q ss_pred CCCCCcCCC Q lcl|Aclame:pro 471 NQDGVIDET 479 (479) Q Consensus 471 ~~~~~~det 479 (479) . +..++++ T Consensus 386 g-e~~~~~~ 393 (395) T protein:vir:40 386 G-DINENKG 393 (395) T ss_pred C-CCCCCcC Confidence 1 1111222 No 236 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=91.37 E-value=0.016 Score=30.40 Aligned_cols=386 Identities=12% Similarity=0.036 Sum_probs=156.7 Q ss_pred HHHHHHHHHHHhh---HHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeee Q lcl|Aclame:pro 24 LVKVIEHYILKHR---PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVF 100 (479) Q Consensus 24 ~~~~i~~~~~~~~---~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~ 100 (479) +...+.++..+.+ -.......++ .|..-... +.. ..... ...-...+..-..|+.+++-+.+-|+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~----~~~~~----~~~a~~~~~v~~~v~~ia~~iA~lp~~v 70 (460) T protein:vir:10 1 MANRIIRALRELTGLDNKFNDAFIKY-IGQTFTKY-DNN----GKTYL----EQGYNINPDVYSCISQMAAKTVAVPYTI 70 (460) T ss_pred CchhHHHHHhhhhccCCCchHHHHHh-hccccCCC-ccc----hhhhh----HHHHhcchHHHHHHHHHHHhhhhCceEE Confidence 2222222211100 0001111111 12110000 000 00000 0000122444556777777777777664 Q ss_pred cC--Cchh-------------------------------HHHHHHHHHh--c---CHHHHHHHHHHHHHhCCeEEEEEEe Q lcl|Aclame:pro 101 NA--DDDN-------------------------------LTKLLNDLLG--E---EFDDTITELYLNASNKGVEWLHPYI 142 (479) Q Consensus 101 ~~--~~~~-------------------------------~~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~ 142 (479) -- .+.. .......++. | ....+...+....+.+|.+|+.+.. T Consensus 71 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r 150 (460) T protein:vir:10 71 KVVKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMS 150 (460) T ss_pred EeccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEe Confidence 21 1100 0011112221 2 2344556677789999999999987 Q ss_pred CCC----Cce-EEEEEccceeEEEEcCCCCCc-eEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccc Q lcl|Aclame:pro 143 NRK----GEF-KYVIIPAEEAIPIWDSKRQRE-LVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDE 216 (479) Q Consensus 143 d~~----~~~-~i~~~~p~~~~~~~d~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~ 216 (479) +.. |.+ .+..++|..+.+..+...... ....++.|... ..+ ....+.++.+.+++.-... T Consensus 151 ~~~~~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~-~~g----~~~~~~~~evih~r~~~~~--------- 216 (460) T protein:vir:10 151 PDDGINAGVPSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLI-QGD----QFIEFNEDEVIHTKYANPN--------- 216 (460) T ss_pred cCCCccCceeEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEe-cCc----eeEEecccceEEEecCCCC--------- Confidence 543 455 378899999987766543111 01111111111 111 1122333334333211100 Q ss_pred ccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhh Q lcl|Aclame:pro 217 YGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE 296 (479) Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~ 296 (479) .........|.|.+..+...+...........+.+...+.|-.++........+. T Consensus 217 -------------------------~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~~~~i~~~~~~l~~e~ 271 (460) T protein:vir:10 217 -------------------------FDLQGSHLYGMSPIRAILRNINSQNSTIDNNVKTMQNGGVFGFIHGGSTGLTQPQ 271 (460) T ss_pred -------------------------cccccCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCHHH Confidence 0000011347777777777776666555555555566666655544322222111 Q ss_pred ---HHHHh--------hcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc--ccccHHHHHHH Q lcl|Aclame:pro 297 ---FIDNI--------RYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT--GDKSGVALKFL 363 (479) Q Consensus 297 ---~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~--g~~Sg~Ai~~~ 363 (479) ....+ ..++++.++++.+.+.+..+.....+.+..+...+.|+..-+.|+.-.+.. +..+...++.. T Consensus 272 ~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~ 351 (460) T protein:vir:10 272 ADSLKQRLTEMDKSPDRLSQIAGASGEIAFTKISLNTDELKPFDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEE 351 (460) T ss_pred HHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHH Confidence 11111 123456666666666665554555667777788888888878776544332 11122222211 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ccccceeeEEeCCC--CCCCHHHHHHHHHHHhccCChHHHH Q lcl|Aclame:pro 364 YSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNK---SYDYKTVQITFNHS--MIINEAEKIDMAAKSTGIVSDETIV 438 (479) Q Consensus 364 ~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~---~~~~~~i~i~f~~~--~p~d~~e~a~~~~k~~g~is~et~~ 438 (479) .. ..+...|.-.++.+...+...-.. ......+++.|... +..+..+.++.+ .+|+++...++ T Consensus 352 ~~----------~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~~l~~l~~d~~~~~~~~--~~g~~T~NE~R 419 (460) T protein:vir:10 352 RK----------RVVTDNIQPDLVILKQAFDKKFIKRFKGYENAVIEWDISELPEMQTDMVAMASWL--NTIPVTPNEIR 419 (460) T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHhhcCcccccCCceEEeecchhhhHHHHHHHHHHHH--hCCCCCHHHHH Confidence 11 112222322222222222211100 11112233333322 112222222222 26899999999 Q ss_pred HhCCCC--CCHH-HH------HHHHHHHHHHHHhhhhccCCCCCCCc Q lcl|Aclame:pro 439 SNHPWV--EDVN-DE------LERLKKQEDTQKEYDDLIPNNQDGVI 476 (479) Q Consensus 439 ~~l~~~--~d~~-~E------l~~i~~E~~~~~~~~~~~~~~~~~~~ 476 (479) ++++.- +++- .+ +..+++ ...+.....+++.+ T Consensus 420 ~~~g~~pi~~~~gD~~~~~~n~~~~~~------~~~~~~~~~~nq~~ 460 (460) T protein:vir:10 420 IAMKYETLNQDGMDIVFMPSNKVRIDD------VSNNLIDSAFNQNQ 460 (460) T ss_pred HHhCCCCCCCCCCCeeeecccccchhh------cccccCCCcccCCC Confidence 887542 2110 11 111110 00011111111111 No 237 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=90.65 E-value=0.02 Score=29.93 Aligned_cols=354 Identities=11% Similarity=-0.004 Sum_probs=133.3 Q ss_pred HHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhH-HHHHHHHHh-- Q lcl|Aclame:pro 40 YKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNL-TKLLNDLLG-- 116 (479) Q Consensus 40 ~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~-~~~~~~~~~-- 116 (479) +..+.+.+..+....+-... ... ... ....-+........|+.+++-+..-|+.+-..+... ..+...+.. T Consensus 1 Mg~f~~lf~~~~~~~~~~~~---~~~--~~v-~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~~~~ll~~~P 74 (395) T protein:vir:95 1 MSILEKIFKTRKDITYMLDL---DMI--EDL-SQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKNDVYYKLNIKP 74 (395) T ss_pred CchhhhhhccCccccccccc---hhc--ccc-chhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccchHHHHHHhcc Confidence 22222222222211100000 000 000 000012234556667777777777777643332222 222233321 Q ss_pred cC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeE--EEEcCCCCCceEEEEEEEeeecccCceEEEEE Q lcl|Aclame:pro 117 EE---FDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAI--PIWDSKRQRELVAFIRFYYIEDIDGNKIKRVE 191 (479) Q Consensus 117 n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~--~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 191 (479) |. ...+...+....+..|.+|+.+..+ +.+ ..+++.... .+++.. ...+ ..... ..-. T Consensus 75 N~~~t~~~f~~~~~~~lll~g~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~-----~~~~---~~~~~-----~~~~ 137 (395) T protein:vir:95 75 NTDLSSDSFWQQVIYKLIYDNEVLIVVSDS--KEL--LIADSFYREEYALYDDI-----FKDV---TVKDY-----TYQR 137 (395) T ss_pred CcCCCHHHHHHHHHHHHhhCCceEEEEecC--CCe--EecCCccceeEeecCcc-----eeEE---EEcCc-----eeee Confidence 32 2344455666777777777655433 222 222222211 111111 0000 00000 0011 Q ss_pred EEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 192 YYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNIST 271 (479) Q Consensus 192 ~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~ 271 (479) .+.++.+.+++.. ++ .....|.|.++.+...++... T Consensus 138 ~~~~~evih~~~~------------------------------~~---------~~~~~G~spi~~~~~~~~~~~----- 173 (395) T protein:vir:95 138 TFTMQEVIYLKYN------------------------------NN---------KVTHFVESLFEDYGKIFGRMI----- 173 (395) T ss_pred eeccccEEEEccC------------------------------CC---------CcccccchHHHHHHHHHHHHH----- Confidence 1222222222110 00 012346665555554444332 Q ss_pred HHHHHHHhccceeeeecCCccchhhHHHH----hh-------ccc--ceecCCCCcceeeecCCC-----HHHHHHHHHH Q lcl|Aclame:pro 272 LADNLDEIQEVIYVLKEYPGTSLQEFIDN----IR-------YYK--SIKVDGGGGVDKLEINIP-----VEAKKELLDR 333 (479) Q Consensus 272 ~~~~~~~~~~p~l~~~g~~~~~~~~~~~~----~~-------~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 333 (479) +.+...+.+-.++........++.... +. .++ ++.++++.+.+.++.... ...+.+..+. T Consensus 174 --~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~ 251 (395) T protein:vir:95 174 --GAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRD 251 (395) T ss_pred --HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHH Confidence 233334443333322221112221111 11 111 222444444444433211 2346666677 Q ss_pred HHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceeeEEeCC Q lcl|Aclame:pro 334 LEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNK-SYDYKTVQITFNH 412 (479) Q Consensus 334 l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~~i~i~f~~ 412 (479) ..+.|+..-++|+.-.++. ..+.+.. ........|.-.+..|...+...--. ..-...+++.+.. T Consensus 252 ~~~~Ia~~f~VPp~~l~~~-~sn~e~~-------------~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~ 317 (395) T protein:vir:95 252 AIKNVALMIGIPPGLIYGE-TADLEKN-------------TLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVG 317 (395) T ss_pred HHHHHHHHhCCCHHHhcCc-ccCHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcChhhhcccceecchh Confidence 7778887777776543321 1111111 11112222332222222222211000 0011123556667 Q ss_pred CCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCH--HH--------HHHHHHHHHHHHHhhhhccCCCCCCCcC Q lcl|Aclame:pro 413 SMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDV--ND--------ELERLKKQEDTQKEYDDLIPNNQDGVID 477 (479) Q Consensus 413 ~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~--~~--------El~~i~~E~~~~~~~~~~~~~~~~~~~d 477 (479) .+..|..+.++++.++ .|+++.-.++.+++.- +++ +. .++....++. .......-.++.++.+| T Consensus 318 l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~-~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:95 318 VNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEK-EKDENTLKGGDEDESGD 395 (395) T ss_pred hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccC-cccccccCCCCCCCCCC Confidence 7778888999988876 5789999888887542 222 10 1111111111 11111122233334444 No 238 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=90.65 E-value=0.02 Score=29.93 Aligned_cols=354 Identities=11% Similarity=-0.004 Sum_probs=133.3 Q ss_pred HHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhH-HHHHHHHHh-- Q lcl|Aclame:pro 40 YKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNL-TKLLNDLLG-- 116 (479) Q Consensus 40 ~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~-~~~~~~~~~-- 116 (479) +..+.+.+..+....+-... ... ... ....-+........|+.+++-+..-|+.+-..+... ..+...+.. T Consensus 1 Mg~f~~lf~~~~~~~~~~~~---~~~--~~v-~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~~~~ll~~~P 74 (395) T protein:vir:10 1 MSILEKIFKTRKDITYMLDL---DMI--EDL-SQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKNDVYYKLNIKP 74 (395) T ss_pred CchhhhhhccCccccccccc---hhc--ccc-chhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccchHHHHHHhcc Confidence 22222222222211100000 000 000 000012234556667777777777777643332222 222233321 Q ss_pred cC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeE--EEEcCCCCCceEEEEEEEeeecccCceEEEEE Q lcl|Aclame:pro 117 EE---FDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAI--PIWDSKRQRELVAFIRFYYIEDIDGNKIKRVE 191 (479) Q Consensus 117 n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~--~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 191 (479) |. ...+...+....+..|.+|+.+..+ +.+ ..+++.... .+++.. ...+ ..... ..-. T Consensus 75 N~~~t~~~f~~~~~~~lll~g~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~-----~~~~---~~~~~-----~~~~ 137 (395) T protein:vir:10 75 NTDLSSDSFWQQVIYKLIYDNEVLIVVSDS--KEL--LIADSFYREEYALYDDI-----FKDV---TVKDY-----TYQR 137 (395) T ss_pred CcCCCHHHHHHHHHHHHhhCCceEEEEecC--CCe--EecCCccceeEeecCcc-----eeEE---EEcCc-----eeee Confidence 32 2344455666777777777655433 222 222222211 111111 0000 00000 0011 Q ss_pred EEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 192 YYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNIST 271 (479) Q Consensus 192 ~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~ 271 (479) .+.++.+.+++.. ++ .....|.|.++.+...++... T Consensus 138 ~~~~~evih~~~~------------------------------~~---------~~~~~G~spi~~~~~~~~~~~----- 173 (395) T protein:vir:10 138 TFTMQEVIYLKYN------------------------------NN---------KVTHFVESLFEDYGKIFGRMI----- 173 (395) T ss_pred eeccccEEEEccC------------------------------CC---------CcccccchHHHHHHHHHHHHH----- Confidence 1222222222110 00 012346665555554444332 Q ss_pred HHHHHHHhccceeeeecCCccchhhHHHH----hh-------ccc--ceecCCCCcceeeecCCC-----HHHHHHHHHH Q lcl|Aclame:pro 272 LADNLDEIQEVIYVLKEYPGTSLQEFIDN----IR-------YYK--SIKVDGGGGVDKLEINIP-----VEAKKELLDR 333 (479) Q Consensus 272 ~~~~~~~~~~p~l~~~g~~~~~~~~~~~~----~~-------~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 333 (479) +.+...+.+-.++........++.... +. .++ ++.++++.+.+.++.... ...+.+..+. T Consensus 174 --~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~ 251 (395) T protein:vir:10 174 --GAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRD 251 (395) T ss_pred --HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHH Confidence 233334443333322221112221111 11 111 222444444444433211 2346666677 Q ss_pred HHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceeeEEeCC Q lcl|Aclame:pro 334 LEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNK-SYDYKTVQITFNH 412 (479) Q Consensus 334 l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~~i~i~f~~ 412 (479) ..+.|+..-++|+.-.++. ..+.+.. ........|.-.+..|...+...--. ..-...+++.+.. T Consensus 252 ~~~~Ia~~f~VPp~~l~~~-~sn~e~~-------------~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~ 317 (395) T protein:vir:10 252 AIKNVALMIGIPPGLIYGE-TADLEKN-------------TLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVG 317 (395) T ss_pred HHHHHHHHhCCCHHHhcCc-ccCHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcChhhhcccceecchh Confidence 7778887777776543321 1111111 11112222332222222222211000 0011123556667 Q ss_pred CCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCH--HH--------HHHHHHHHHHHHHhhhhccCCCCCCCcC Q lcl|Aclame:pro 413 SMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDV--ND--------ELERLKKQEDTQKEYDDLIPNNQDGVID 477 (479) Q Consensus 413 ~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~--~~--------El~~i~~E~~~~~~~~~~~~~~~~~~~d 477 (479) .+..|..+.++++.++ .|+++.-.++.+++.- +++ +. .++....++. .......-.++.++.+| T Consensus 318 l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~-~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 318 VNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEK-EKDENTLKGGDEDESGD 395 (395) T ss_pred hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccC-cccccccCCCCCCCCCC Confidence 7778888999988876 5789999888887542 222 10 1111111111 11111122233334444 No 239 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=90.65 E-value=0.02 Score=29.93 Aligned_cols=354 Identities=11% Similarity=-0.004 Sum_probs=133.3 Q ss_pred HHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhH-HHHHHHHHh-- Q lcl|Aclame:pro 40 YKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNL-TKLLNDLLG-- 116 (479) Q Consensus 40 ~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~-~~~~~~~~~-- 116 (479) +..+.+.+..+....+-... ... ... ....-+........|+.+++-+..-|+.+-..+... ..+...+.. T Consensus 1 Mg~f~~lf~~~~~~~~~~~~---~~~--~~v-~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~~~~ll~~~P 74 (395) T protein:vir:10 1 MSILEKIFKTRKDITYMLDL---DMI--EDL-SQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKNDVYYKLNIKP 74 (395) T ss_pred CchhhhhhccCccccccccc---hhc--ccc-chhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccchHHHHHHhcc Confidence 22222222222211100000 000 000 000012234556667777777777777643332222 222233321 Q ss_pred cC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeE--EEEcCCCCCceEEEEEEEeeecccCceEEEEE Q lcl|Aclame:pro 117 EE---FDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAI--PIWDSKRQRELVAFIRFYYIEDIDGNKIKRVE 191 (479) Q Consensus 117 n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~--~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 191 (479) |. ...+...+....+..|.+|+.+..+ +.+ ..+++.... .+++.. ...+ ..... ..-. T Consensus 75 N~~~t~~~f~~~~~~~lll~g~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~-----~~~~---~~~~~-----~~~~ 137 (395) T protein:vir:10 75 NTDLSSDSFWQQVIYKLIYDNEVLIVVSDS--KEL--LIADSFYREEYALYDDI-----FKDV---TVKDY-----TYQR 137 (395) T ss_pred CcCCCHHHHHHHHHHHHhhCCceEEEEecC--CCe--EecCCccceeEeecCcc-----eeEE---EEcCc-----eeee Confidence 32 2344455666777777777655433 222 222222211 111111 0000 00000 0011 Q ss_pred EEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 192 YYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNIST 271 (479) Q Consensus 192 ~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~ 271 (479) .+.++.+.+++.. ++ .....|.|.++.+...++... T Consensus 138 ~~~~~evih~~~~------------------------------~~---------~~~~~G~spi~~~~~~~~~~~----- 173 (395) T protein:vir:10 138 TFTMQEVIYLKYN------------------------------NN---------KVTHFVESLFEDYGKIFGRMI----- 173 (395) T ss_pred eeccccEEEEccC------------------------------CC---------CcccccchHHHHHHHHHHHHH----- Confidence 1222222222110 00 012346665555554444332 Q ss_pred HHHHHHHhccceeeeecCCccchhhHHHH----hh-------ccc--ceecCCCCcceeeecCCC-----HHHHHHHHHH Q lcl|Aclame:pro 272 LADNLDEIQEVIYVLKEYPGTSLQEFIDN----IR-------YYK--SIKVDGGGGVDKLEINIP-----VEAKKELLDR 333 (479) Q Consensus 272 ~~~~~~~~~~p~l~~~g~~~~~~~~~~~~----~~-------~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 333 (479) +.+...+.+-.++........++.... +. .++ ++.++++.+.+.++.... ...+.+..+. T Consensus 174 --~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~ 251 (395) T protein:vir:10 174 --GAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRD 251 (395) T ss_pred --HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHH Confidence 233334443333322221112221111 11 111 222444444444433211 2346666677 Q ss_pred HHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceeeEEeCC Q lcl|Aclame:pro 334 LEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNK-SYDYKTVQITFNH 412 (479) Q Consensus 334 l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~~i~i~f~~ 412 (479) ..+.|+..-++|+.-.++. ..+.+.. ........|.-.+..|...+...--. ..-...+++.+.. T Consensus 252 ~~~~Ia~~f~VPp~~l~~~-~sn~e~~-------------~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~ 317 (395) T protein:vir:10 252 AIKNVALMIGIPPGLIYGE-TADLEKN-------------TLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVG 317 (395) T ss_pred HHHHHHHHhCCCHHHhcCc-ccCHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcChhhhcccceecchh Confidence 7778887777776543321 1111111 11112222332222222222211000 0011123556667 Q ss_pred CCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCH--HH--------HHHHHHHHHHHHHhhhhccCCCCCCCcC Q lcl|Aclame:pro 413 SMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDV--ND--------ELERLKKQEDTQKEYDDLIPNNQDGVID 477 (479) Q Consensus 413 ~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~--~~--------El~~i~~E~~~~~~~~~~~~~~~~~~~d 477 (479) .+..|..+.++++.++ .|+++.-.++.+++.- +++ +. .++....++. .......-.++.++.+| T Consensus 318 l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~-~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 318 VNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEK-EKDENTLKGGDEDESGD 395 (395) T ss_pred hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccC-cccccccCCCCCCCCCC Confidence 7778888999988876 5789999888887542 222 10 1111111111 11111122233334444 No 240 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=90.38 E-value=0.021 Score=29.77 Aligned_cols=403 Identities=11% Similarity=-0.026 Sum_probs=161.9 Q ss_pred HHHHHHHHhccChH---HHHHHHHHHHHHhhHH-H------HHHHHHHhccCCcccccccccccccccccccccCcceee Q lcl|Aclame:pro 9 TDLIKVQLKKESTI---NLVKVIEHYILKHRPE-K------YKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) Q Consensus 9 ~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~-~------~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 78 (479) |..+.......... .+.............. . --....+..|.... ..+.. ..... ...-.. T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~----g~~v~----~~~a~~ 71 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTE-LAPDT----FVGLA----TQAYQA 71 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhcccccc-ccCcc----ccccc----hhhhhc Confidence 44444433332211 0111110000000000 0 00111111111100 00000 00000 000123 Q ss_pred cchHHHHHHHHHhhhhccCeeecCCc----hh-HHHHHHHHHh--c---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCc- Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGNPIVFNADD----DN-LTKLLNDLLG--E---EFDDTITELYLNASNKGVEWLHPYINRKGE- 147 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~~~~~~~~~----~~-~~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~- 147 (479) ++.....|+.+++-+..-|+.+--.+ .+ ....+..+.. | ....+...+...++.+|.+|+.+..++.|. T Consensus 72 ~~~v~~~i~~Ia~~ia~lp~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l 151 (466) T protein:vir:81 72 NGPVFACMLVRQLVFSSVRFRWQRLRDGKPSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRM 151 (466) T ss_pred cHHHHHHHHHHHHhhccCceEEEEecCCceeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCcccc Confidence 45566778888888888887653211 11 1112222222 3 234456677889999999999998876554 Q ss_pred --------eEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceE-EEEEEEeCCcEEEEEEcCCcccccccccccc Q lcl|Aclame:pro 148 --------FKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKI-KRVEYYTENDITYFIERGNSFIQEFLYDEYG 218 (479) Q Consensus 148 --------~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~ 218 (479) ..+..++|..+.+..+......+. ..|.. .+... .....+..+.+.+++.- T Consensus 152 ~~~~~g~~~~l~~l~~~~v~~~~~~~~~~~~~---y~~~~---~~~~~~~~~~~~~~~dviHir~~-------------- 211 (466) T protein:vir:81 152 RPDWVDVVVEERMVRGGRGELGGGQLGWRKVG---YLYTE---GGRQSGNESVGFLAEDVVHFAPI-------------- 211 (466) T ss_pred ccccCcceeEEEEecCcceEEEEcCCCceEEE---EEEEe---cCcccccceeeeccccEEEEcCC-------------- Confidence 346777777777666543221111 01111 11000 00111223333322110 Q ss_pred ccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchh--- Q lcl|Aclame:pro 219 KMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQ--- 295 (479) Q Consensus 219 ~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~--- 295 (479) .+++ +...|.|.+..+...++............+...+.|-.++.-......+ T Consensus 212 ---------------~~~~---------d~~~G~s~i~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~ 267 (466) T protein:vir:81 212 ---------------PDPL---------ASYRGMSWLTPILREIRADQAMSKHQAKFFDNGATVNLVIKHNPMADPAAVK 267 (466) T ss_pred ---------------CCcc---------cccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHHHHH Confidence 0010 1124778777777766665555555555566667776666532211111 Q ss_pred hHHHHh--------hcccceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCccccc---ccccHHHHHHHH Q lcl|Aclame:pro 296 EFIDNI--------RYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT---GDKSGVALKFLY 364 (479) Q Consensus 296 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~---g~~Sg~Ai~~~~ 364 (479) .....+ ..++++.++++.+++.+..+.....+.+..+.....|...-++|+.-.+.. +..++..++... T Consensus 268 ~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~ 347 (466) T protein:vir:81 268 KWADEVNSKHAGVDNAWKNLNLYPGADADVVGSNLQEIDFKNVRGGGETRIAAAAGVPPVIVGLSEGLAAATYSNYGQAR 347 (466) T ss_pred HHHHHHHHHhcCccccccceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcccccCCCccccccHHHHH Confidence 111111 113456677776777666555566677788888888888888887654421 222332222221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEe--CCCCCCCHHHHHHHH-------HHH--hccCC Q lcl|Aclame:pro 365 SLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITF--NHSMIINEAEKIDMA-------AKS--TGIVS 433 (479) Q Consensus 365 ~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f--~~~~p~d~~e~a~~~-------~k~--~g~is 433 (479) ... +...|.-.++.+...+...--...+.....+.| ...+-.|..+.+++. ..+ +|+ + T Consensus 348 ~~f----------~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~f~~~~llr~d~~~r~~~~~~~~~~~~~~~~~g~-t 416 (466) T protein:vir:81 348 RRL----------ADGTAHPLWQNLSGCIGHVMPDMGPDVRLWYDADDVPFLREDEKDAADIQKVRAETINTLITAGY-E 416 (466) T ss_pred HHH----------HHHHHHHHHHHHHHHHHhhcCCcccCcceEEEecchhhhccCHHHHHHHHHHHHHHHHHHHHcCC-C Confidence 111 122222222222221111100001111233444 455555666655542 222 343 5 Q ss_pred hHHHHHhCCCCCCHH------HHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 434 DETIVSNHPWVEDVN------DELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 434 ~et~~~~l~~~~d~~------~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) ...++...++.+..- .-++.+..-+. .......+ ..+++|+- T Consensus 417 ~nE~r~~~~~gd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~Gg~~n 464 (466) T protein:vir:81 417 PESVVAAVNSGDLRLLKHTGLTSVQLLPPGVS--ASASSDTP--TSGGADDN 464 (466) T ss_pred hhhccccccCCccccccCCCcchhhhcccccc--cccCCCCc--ccCCCCcC Confidence 555554443222100 00111110000 00000001 11111111 No 241 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=90.25 E-value=0.022 Score=29.69 Aligned_cols=285 Identities=10% Similarity=-0.017 Sum_probs=125.0 Q ss_pred EEEEEEeCCCCceE---EEEEccceeE-EEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccc Q lcl|Aclame:pro 136 EWLHPYINRKGEFK---YVIIPAEEAI-PIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQE 211 (479) Q Consensus 136 ~~~~v~~d~~~~~~---i~~~~p~~~~-~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~ 211 (479) +++.+|.-.+|... +.+.+|+.+. -.+++.. .++. ++... ..+.. ...+ T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~--~l~~-~~~~~---~~g~~--~~~l------------------- 53 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDG--GLVA-IEQWG---VFGKA--TVRI------------------- 53 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCC--ceeE-EEecC---CCCCC--ccee------------------- Confidence 88888876566543 3334443221 1122211 1111 11100 00000 0000 Q ss_pred cccccccccccccccccccccccccccccceEEe--cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC Q lcl|Aclame:pro 212 FLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPF--KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY 289 (479) Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~--~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~ 289 (479) .+.+.+-.++- ..+..|.|.+..+.-..--=+..+.+++..++.+..|+.+.+|- T Consensus 54 -----------------------p~~kfi~~~~~~~~g~p~G~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~ 110 (355) T protein:vir:78 54 -----------------------PVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGA 110 (355) T ss_pred -----------------------ccCCEEEEEeCCCCCCccchhhHHHHHHHHHHHHhhHHHHHHHHHHcCCCceEEEec Confidence 01111111111 12456778777766555445567778888899997777776664 Q ss_pred Cccch---h---------h-------HHHHhhcc--cceecCCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCc Q lcl|Aclame:pro 290 PGTSL---Q---------E-------FIDNIRYY--KSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPE 348 (479) Q Consensus 290 ~~~~~---~---------~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~ 348 (479) .+... + + ....+..+ ....++.+.++++++.......+...++...+.|...-.+..++ T Consensus 111 ~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~a~~iip~g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~iLGqtlT 190 (355) T protein:vir:78 111 PLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLT 190 (355) T ss_pred CCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCcceeEeecCCceEEEeecCCCcccHHHHHHHHHHHHHHHHhhhhhc Confidence 33211 0 0 01111112 34567888999999887766677788888888886654444444 Q ss_pred ccccccccHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 349 SQNTGDKSGVAL-KFLYSLLDLKCSKTEKKFKKAIR-ELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAA 426 (479) Q Consensus 349 ~~~~g~~Sg~Ai-~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~ 426 (479) .+..++.+.-|+ .....-....+..-.+.+...+. ++++-++.+ ..... .....+.|.. .+.+....++.+. T Consensus 191 s~~~~~gGS~Alg~vh~~v~~~~~~aD~~~i~~~ln~~li~~l~~l---N~~~~--~~~P~~~~~~-~~~~~~~~a~~~~ 264 (355) T protein:vir:78 191 LGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ---NWGPE--EPAPRLVPAQ-LGKEQPVTAEAIR 264 (355) T ss_pred cccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCC--CCCCEEEecC-cChhHHHHHHHHH Confidence 322111111111 11112222333444455555553 345544432 22211 1234567754 4455667788888 Q ss_pred HHh--cc-CChH----HHHHhCCCCCCHH---HHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 427 KST--GI-VSDE----TIVSNHPWVEDVN---DELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 427 k~~--g~-is~e----t~~~~l~~~~d~~---~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) ++. |+ ++.+ .+.++++. ..+. +++.- .++...........+.... ..+.| T Consensus 265 ~l~~~G~~~~~~~~~~~~~e~~gi-p~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 324 (355) T protein:vir:78 265 ALVECGAFTADPELEKDLRARYGL-PAPAERDDGADA-AAAKAAGRRRAKRLPGQRQ-GAALP 324 (355) T ss_pred HHHhCCCccccHHHHHHHHHHhCC-CCCCCCCcccCC-ccccccccccccccCCccc-ccccc Confidence 774 54 5543 34566663 2221 11110 0111100000011111100 01111 No 242 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=88.99 E-value=0.029 Score=29.02 Aligned_cols=419 Identities=14% Similarity=0.103 Sum_probs=162.1 Q ss_pred CCCcc---cCcHHHHH----HHHhccC---hHHH------HHHHH---HH-HHHhhHHHHHHHHHHhccCCccccccccc Q lcl|Aclame:pro 1 MLNIY---ISETDLIK----VQLKKES---TINL------VKVIE---HY-ILKHRPEKYKQGEEYYYGNTDVNNKRRYY 60 (479) Q Consensus 1 ~~~~~---~~~~~~~~----~~~~~~~---~~~~------~~~i~---~~-~~~~~~~~~~~~~~yy~g~~~~~~~~~~~ 60 (479) |+--+ +....... ...-..+ +..+ ...+. .. ...+...+|+.+-.+++-. T Consensus 1 m~~lfgf~~~~~~~~~~~~~s~~~p~~ddg~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd---------- 70 (558) T protein:vir:10 1 MAKLFGFSIEETQKKSTSIISPVPKNNEDGVDNFISSGFYGQYVDIEGAYRSEYDLIRRYREMALHPEAD---------- 70 (558) T ss_pred CcchhcchhhhhhhhccCCccccCCCccccccceeccceeeeeecccchhhhHHHHHHHHHHHhhccchh---------- Confidence 44333 11110000 0000000 0000 00000 00 0111222333333322211 Q ss_pred ccccccccccccCcceeecchHHHHHHHH-HhhhhccCeeecCCchh----HHHHHH-HH---H-hcCHHHHHHHHHHHH Q lcl|Aclame:pro 61 LLDGAKVDDFTKVNNKAINNYHKLLVDQK-VGYSVGNPIVFNADDDN----LTKLLN-DL---L-GEEFDDTITELYLNA 130 (479) Q Consensus 61 ~~~~~~~~~~~~~~~ri~~n~~~~iv~~~-a~~l~g~~~~~~~~~~~----~~~~~~-~~---~-~n~~~~~~~~~~~~~ 130 (479) +=...||+.. +.-...+|+.+..++.+ +.+.+. +| . -=+|+....+..|.+ T Consensus 71 -------------------~Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~W 131 (558) T protein:vir:10 71 -------------------GAIEDVVNEAIVSDLYDSPVEVELSNLNASNTLKKKIREEFRYIKEMMDFDKKSHEIFRNW 131 (558) T ss_pred -------------------hHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhh Confidence 1111222221 12223445555544433 222222 12 1 137899999999999 Q ss_pred HhCCeEEEEEEeCCC----CceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccC----ceEEEEEEEeCCcEEEEE Q lcl|Aclame:pro 131 SNKGVEWLHPYINRK----GEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDG----NKIKRVEYYTENDITYFI 202 (479) Q Consensus 131 ~~~G~~~~~v~~d~~----~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~y~~~~i~~~~ 202 (479) .+.|+.|.....|.+ |-..+..++|+.+-.|..-... ..-.-....+....+ ..+..+-+|.++..++.. T Consensus 132 YVDgRiyfHKiid~k~pk~GI~ELr~lDPr~i~~Vr~i~~~--~~~~~~~~~~~~~~~~~~~~~~~eyy~Y~~~~~~~~~ 209 (558) T protein:vir:10 132 YVDGRVFYLKVIDTKNPQEGIQDLRYIDPLKIKFIRQEKRK--PGNQDPAIRVRSEQDVVPNPEFEEFYIYTPKVQHPTG 209 (558) T ss_pred eeeeEEEEEEEEeCCCccccceeeeeeCcccceeeeeeccc--cccccceeeeecccceeeccceeEeeeecCCcccccc Confidence 999999999888643 6677999999998666542111 000000111111111 111112223332222211 Q ss_pred EcCCccccccccccccccccccccccccccccccccccce--EEec-------CCCCCCchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 ERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF--IPFK-------NNEKCVSDLTFYKSLIDIYDNNISTLA 273 (479) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv--v~~~-------n~~~g~s~~~~v~~lid~~~~~~s~~~ 273 (479) ..+ .. . ..+++ +||- |.|. |...-.|-+...+-....| +++-|.+ T Consensus 210 ~~~-~~-~----------------------~~~~v-kI~~dAI~y~hSGL~d~~~~~i~syLhkAIKp~NQL-kmlEDAl 263 (558) T protein:vir:10 210 MVG-QM-G----------------------GKNSI-KIAKDSITMCTSGLVDRNKNRVLSYLHKAIKALNQL-RMIEDSL 263 (558) T ss_pred cce-ee-c----------------------CCCce-eechhheeeecccceecCCCeeeecchHhhHhHHhh-HHHHhhH Confidence 100 00 0 00000 1111 1111 1111123344433333333 4567777 Q ss_pred HHHHHhccceeeeecC--CccchhhH-------HHHhhc----------------ccce----ec---CCCCcceeeecC Q lcl|Aclame:pro 274 DNLDEIQEVIYVLKEY--PGTSLQEF-------IDNIRY----------------YKSI----KV---DGGGGVDKLEIN 321 (479) Q Consensus 274 ~~~~~~~~p~l~~~g~--~~~~~~~~-------~~~~~~----------------~~~~----~~---~~~~~~~~~~~~ 321 (479) ..-+..+.|-+-+.-. +..+.... ..+.+. ...+ -+ +++.+.+.-+.+ T Consensus 264 VIYRitRAPERRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLp 343 (558) T protein:vir:10 264 VIYRLSRAPERRIFYIDVGNLPKVKAEQYLKEVMSRYRNKLVYDANTGEVRDDRKFMSMMEDFWLPRREGGRGTEITTLP 343 (558) T ss_pred HHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhHhhhcccccCCCCccceeecc Confidence 7778888775543321 11121111 111110 0000 01 122223333333 Q ss_pred --CCHHHHHHHHHHHHHHHHHHhCCCCC--ccc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 322 --IPVEAKKELLDRLEKNIIIFGQGVNP--ESQ---NTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLK 394 (479) Q Consensus 322 --~~~~~~~~~~~~l~~~i~~~s~~~~~--~~~---~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 394 (479) .+.. -..-+.-+++-++.--.+|-- ..+ ++|.. .+|--.+......+.+.+..|...+.++++.=+-+-+ T Consensus 344 GgqnLg-em~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~--~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKg 420 (558) T protein:vir:10 344 GGQNLG-ELSDVDYFQKKLYRALGVPESRIAAEGGFNLGRS--SEILRDELKFAKFVGRLRKRFAAMFNDMLKTQLVLKN 420 (558) T ss_pred ccCCcc-hHHHHHHHHHHHHHHhCCCccccCCCCccccccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc Confidence 2221 122333344444444444421 111 22322 2333334444555777777777777777764333333 Q ss_pred hcCCCcccc--ceeeEEeCCCCCCCHHHHHH-------HHHHHh---c-cCChHHHHHhCCCCCC--HHHHHHHHHHHHH Q lcl|Aclame:pro 395 ISGNKSYDY--KTVQITFNHSMIINEAEKID-------MAAKST---G-IVSDETIVSNHPWVED--VNDELERLKKQED 459 (479) Q Consensus 395 ~~~~~~~~~--~~i~i~f~~~~p~d~~e~a~-------~~~k~~---g-~is~et~~~~l~~~~d--~~~El~~i~~E~~ 459 (479) +....+.+. ..+.+.|..--.-.+...++ ++..+. | .+|.+++.+.+=-.+| ..++.++|++|.. T Consensus 421 iit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeeI~~~~kqI~~E~k 500 (558) T protein:vir:10 421 IVTPEDWKTMEDHIQYDFLYDNQFAELKESELMEGRLGMLATIEPYIGKYYSTEYVRKRVLRQTDMEIEEIDTQIEDEIQ 500 (558) T ss_pred CCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHh Confidence 333322222 45777775444333333333 333343 3 4799999987533443 4456677777654 Q ss_pred HHH-------hhh--hccC--------CCCCCCcCCC Q lcl|Aclame:pro 460 TQK-------EYD--DLIP--------NNQDGVIDET 479 (479) Q Consensus 460 ~~~-------~~~--~~~~--------~~~~~~~det 479 (479) .-. +.. +.++ +..+...|.. T Consensus 501 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (558) T protein:vir:10 501 KGIIPDPSQIDPITGEPLPQEGDPAMEGMGEQPVDPD 537 (558) T ss_pred CCCCCCccccChhhccccCccCCchhccCCCCCcccc Confidence 210 000 0010 0000000000 No 243 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=87.85 E-value=0.036 Score=28.50 Aligned_cols=408 Identities=13% Similarity=0.092 Sum_probs=160.8 Q ss_pred CC---------------------------CcccCcHHHHH---HHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccC Q lcl|Aclame:pro 1 ML---------------------------NIYISETDLIK---VQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGN 50 (479) Q Consensus 1 ~~---------------------------~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~ 50 (479) |+ -.+.-.+..+. .+. .....+. .+...+|+.+-.+++-. T Consensus 1 ~~~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~~~~~~~~g~~~~~-e~~~~~~---------~eLI~~YR~ma~~pEvd 70 (537) T protein:vir:10 1 MAQQLFGFSLQRAKKVPKGPSFVQKDSLDGSQPIVGGGYFGYSVDF-DGTIRND---------HELITRYREMVLNPECD 70 (537) T ss_pred CccccccceeecccccccCCcccCCCcccccceeeccccccccccc-ccccchH---------HHHHHHHHHHhhccchh Confidence 11 01100000000 000 0001111 11223344444433322 Q ss_pred CcccccccccccccccccccccCcceeecchHHHHHHHH-HhhhhccCeeecCCchhHH----HHH----HHHH-hcCHH Q lcl|Aclame:pro 51 TDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQK-VGYSVGNPIVFNADDDNLT----KLL----NDLL-GEEFD 120 (479) Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~-a~~l~g~~~~~~~~~~~~~----~~~----~~~~-~n~~~ 120 (479) . =...||+.. +.-...+|+.+..++.+.. +.+ +.+. -=+|+ T Consensus 71 ~-----------------------------Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~ 121 (537) T protein:vir:10 71 S-----------------------------AVDDVVNETICGNFDDVPISIDLHNLKQSEKIKKLIRSEFDEILRLLDFD 121 (537) T ss_pred h-----------------------------HHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccc Confidence 1 111122211 1222334555554442222 222 1121 13788 Q ss_pred HHHHHHHHHHHhCCeEEEEEEeCCC----CceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceE----EEEEE Q lcl|Aclame:pro 121 DTITELYLNASNKGVEWLHPYINRK----GEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKI----KRVEY 192 (479) Q Consensus 121 ~~~~~~~~~~~~~G~~~~~v~~d~~----~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~ 192 (479) ....+..|.+.+.|+.|.....|.+ |-..+..+||+.+..+..-... ....++... . +..+ .-+-+ T Consensus 122 ~~~~e~fR~WYVDgRi~fhKiid~k~pk~GI~ELr~lDPr~i~~vR~i~~~--~~~~~~~~~---~-~~~v~~~~~eyf~ 195 (537) T protein:vir:10 122 NRAYEIFRRWYVDGRLFFHKVIDPKKPRQGLVELRYVDPRKIRKVTEYEAK--RPEALRTQD---L-NQQLTQQSASYFL 195 (537) T ss_pred hhhhHHHhhheeeeEEEEEEEEeCCCccccceeeeeeCCccceeeEeeccc--CCccceEEe---c-ceeeeecccceee Confidence 9999999999999999999888643 6677999999998665432111 011111110 0 0010 01122 Q ss_pred EeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 193 YTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTL 272 (479) Q Consensus 193 y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~ 272 (479) |.+...+. .+.+.+ -.+...+ ...| -|.++ .|.....|-+...+-....| +++-|. T Consensus 196 ynp~g~~~---~~~~~v--------------kI~~dAI-~y~h-SGl~d----~n~~~i~syLhkAiKp~NQL-km~EDA 251 (537) T protein:vir:10 196 YNPKGLKN---STNQGM--------------KIAPDSI-AYCH-SGIQD----LNKNMVLSHLHKAIKAVNQL-RMIEDS 251 (537) T ss_pred eccccccc---cCCCce--------------eccHhhe-eeec-cccee----CCCCeeeeeehhhhHHHHhh-HHHHhh Confidence 33322110 000000 0000000 0000 00000 12223345555544444444 456777 Q ss_pred HHHHHHhccceeeeecC--CccchhhH-------HHHhhc----------------ccce----ec---CCCCcceeeec Q lcl|Aclame:pro 273 ADNLDEIQEVIYVLKEY--PGTSLQEF-------IDNIRY----------------YKSI----KV---DGGGGVDKLEI 320 (479) Q Consensus 273 ~~~~~~~~~p~l~~~g~--~~~~~~~~-------~~~~~~----------------~~~~----~~---~~~~~~~~~~~ 320 (479) +..-+..+.|-.-+.-. +..+.... ..+.+. ...+ -+ +++.+.+.-+. T Consensus 252 lVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDyWLPRReGgrgTEItTL 331 (537) T protein:vir:10 252 LVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLEDFWLPRREGGRGTEISTL 331 (537) T ss_pred HHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhhhhhcccccCCCcccceeec Confidence 77778888775543321 11111111 111110 0000 01 12223333333 Q ss_pred CCCH-HHHHHHHHHHHHHHHHHhCCCCC--ccc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 NIPV-EAKKELLDRLEKNIIIFGQGVNP--ESQ---NTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLK 394 (479) Q Consensus 321 ~~~~-~~~~~~~~~l~~~i~~~s~~~~~--~~~---~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 394 (479) +... -+-.+-+.-+++-++.--.+|-- ..+ .+|.. .+|--.+......+.+.+..|...+.++++.=+-+-+ T Consensus 332 pGgqnlgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~--~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKg 409 (537) T protein:vir:10 332 PGGQNLGELEDVKYFQKKLYKALNVPSSRLETETTFNIGRA--AEITRDEVKFQKFIARLRKRFSELFVDLLKTQLILKG 409 (537) T ss_pred cccCCcChHHHHHHHHHHHHHHhCCCccccCCCCccccccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc Confidence 3221 11222333344444444444421 111 12322 2333334444555777777777777777764333333 Q ss_pred hcCCCcccc--ceeeEEeCCCCCCCHHHHHH-------HHHHHh---c-cCChHHHHHhCCCCCC--HHHHHHHHHHHHH Q lcl|Aclame:pro 395 ISGNKSYDY--KTVQITFNHSMIINEAEKID-------MAAKST---G-IVSDETIVSNHPWVED--VNDELERLKKQED 459 (479) Q Consensus 395 ~~~~~~~~~--~~i~i~f~~~~p~d~~e~a~-------~~~k~~---g-~is~et~~~~l~~~~d--~~~El~~i~~E~~ 459 (479) +....+++. ..+.+.|..--.-.+...++ ++..+. | .+|.+++.+.+=-.+| ..++.++|++|.. T Consensus 410 iit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~k~ILr~tDeeI~~~~k~I~~E~k 489 (537) T protein:vir:10 410 ICSIEEWEEMKEHIQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIRTKVLKQTESEIKEIDKEIKQEIA 489 (537) T ss_pred CCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccCHHHHHHHHHHHHHHhh Confidence 333222222 45777785444333433333 333332 3 4799999987533443 4466677777754 Q ss_pred HHHh--hhhccCCC----------CCC---CcCCC Q lcl|Aclame:pro 460 TQKE--YDDLIPNN----------QDG---VIDET 479 (479) Q Consensus 460 ~~~~--~~~~~~~~----------~~~---~~det 479 (479) +-.- .++..... +++ ..|.. T Consensus 490 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (537) T protein:vir:10 490 DGVIMDPQAMQAMEMGIGDEEPVPEGGEEPQTDPN 524 (537) T ss_pred CCCCCCcccccccccCCCCcccCCCCCCCcccCCc Confidence 3110 00000000 001 11110 No 244 >protein:vir:345 Length: 663 # NCBI annotation: virion structural protein # Family: family:all:3199 # MgeID: mge:9 # MgeName: Mx8 # Cross-refs: genbank:acc:NP_203459;genbank:gi:15320615;genbank:GeneID:921720 Probab=86.87 E-value=0.043 Score=28.10 Aligned_cols=443 Identities=11% Similarity=0.051 Sum_probs=186.1 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhh--HHHHHHHHHHhccCCcccccccccccccccccccccCcceee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHR--PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 78 (479) |...- +++.-.+. ..+..-..+.|+....... ..+-+.+.+-|.+...-... .. .| T Consensus 1 m~~~~--~~~~~~tp--e~la~~W~~~I~~a~~~~~~~h~r~~~~~k~y~~~~~~~~~-------------~~---~r-- 58 (663) T protein:vir:34 1 MNESQ--PTDFADTP--QGWAQRWQEEMSAAREPLEKWHTQGKEIVKRYRDERDSAHD-------------AE---TR-- 58 (663) T ss_pred CCccc--cccchhcc--hhHHHHHHHHHHHHHhccchHHHHHHHHHHHhhccccCCCc-------------cc---cc-- Confidence 55532 12222222 1133344444543222111 12455666777654311110 00 01 Q ss_pred cchHHHHHHHHHhhhhccCeeecC-----C-ch----hHHHHHHH-----HH--hcCHHHHHHHHHHHHHhCCeEEEEEE Q lcl|Aclame:pro 79 NNYHKLLVDQKVGYSVGNPIVFNA-----D-DD----NLTKLLND-----LL--GEEFDDTITELYLNASNKGVEWLHPY 141 (479) Q Consensus 79 ~n~~~~iv~~~a~~l~g~~~~~~~-----~-~~----~~~~~~~~-----~~--~n~~~~~~~~~~~~~~~~G~~~~~v~ 141 (479) .|+.--=|..+.--+.+.+|..+. + +. ...+++.. +. +++|+..+...+++++.+|++.+.|. T Consensus 59 ~nl~~sni~~i~P~iYar~P~p~V~~rf~d~d~~~~r~ase~leR~~~~~~~~D~~~l~~~~~~~v~d~ll~~rG~~~v~ 138 (663) T protein:vir:34 59 WNLFSTNIQTQMASLYGQTPKVSVSRRFADADDDVARVASELLERLLNTDIEKDSDTFQQALEYALQDRLLPGFGLCRIR 138 (663) T ss_pred cchhhhhHHHHhhhhhcCCCcceeeecccCcccchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhccccceEEEE Confidence 233222233333344555554332 1 21 22333333 21 24588888899999999999888876 Q ss_pred eCC--------------C-----------------CceEEEEEccceeEEEEcCCCC-CceEEEEEE-Eeee-------- Q lcl|Aclame:pro 142 INR--------------K-----------------GEFKYVIIPAEEAIPIWDSKRQ-RELVAFIRF-YYIE-------- 180 (479) Q Consensus 142 ~d~--------------~-----------------~~~~i~~~~p~~~~~~~d~~~~-~~~~~~i~~-~~~~-------- 180 (479) +-. . ..++|..++-+++ ++++... .++.+.++. |... T Consensus 139 Ye~~~~~~~~~~~~~D~~~~~~~a~~~~~~e~~a~E~v~id~v~~~df--l~~pAr~W~ev~wva~r~~mtk~e~~~rf~ 216 (663) T protein:vir:34 139 YEVEWEEVAGVDAILDEATGAELAAAVPPTQRKAYECVETDYLHWQDV--LWSPARVWHEVRWLAFRNLLDMREFNARFD 216 (663) T ss_pred eecccchhccccccCCCccccchhcccccchhhcccceeeeeechhhc--ccchhhccccccceeeeccCCHHHHHHhhc Confidence 511 0 0244555544444 2333321 122222211 1100 Q ss_pred ------------c----c---c------CceEEEEEEEeCCcEEE-EEEcCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 181 ------------D----I---D------GNKIKRVEYYTENDITY-FIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKE 234 (479) Q Consensus 181 ------------~----~---~------~~~~~~~~~y~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (479) . . + .......|+|++..-.. |..+|...... . .+.+..+..-.| T Consensus 217 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~VwEIWdK~~~~V~w~~eg~~~~L~----~------~~p~lgl~~ffP 286 (663) T protein:vir:34 217 ADGSRNLWASVPKVGKPKDGKDGQSCHPWDRAEVWEIWDKGGRKVDWYVEGYSAVLD----T------QPDPLGLESFFP 286 (663) T ss_pred CChhhhhhhhccCcCCccccCCCCCcchhcCcceeEEEecCCcEEEEEEcCcceecc----c------CCCCCCCCCCCC Confidence 0 0 0 01233456666543222 22222221111 0 111111111122 Q ss_pred ccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccceec----- Q lcl|Aclame:pro 235 QGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKV----- 309 (479) Q Consensus 235 ~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~----- 309 (479) .|+...|+... .+-...++|.-...+++++|.+- +..+.+...-.|-.+.....+++......+...+..+.+ T Consensus 287 cPrpl~~~~~~-ds~ipvpd~~~y~~~~~E~n~~t-~Rin~l~d~ikv~gvy~~~~g~~i~~~l~~a~~n~lvpV~~~~~ 364 (663) T protein:vir:34 287 CPKPLLANWTT-DKVVPRPDFVLAQDLYKEIDLVS-TRITLLERAIRVVGVYDKSSGLTIGRLLSEAAQNDLIPVENWLT 364 (663) T ss_pred CcccccceecC-CCeecCCcHHHHHHHHHHHHHHH-HHHHHHHhhhhhceeeccccchhHHHHHHHhhCCCceecchhhh Confidence 22222222111 13346688888899999998753 333444444444334332233333332322222222222 Q ss_pred -CCCCc----ceeeecCCCH---HHHHHHHHHHHHHHHHHhCCCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 310 -DGGGG----VDKLEINIPV---EAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKK 380 (479) Q Consensus 310 -~~~~~----~~~~~~~~~~---~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~ 380 (479) .+.++ +.++-.+-.. .++-..-..++..++++++..+..-+.. .+-+++|-..+-+.+-.++.+++..+.. T Consensus 365 ~~~~gg~~k~I~~~pi~~~~~aI~~l~~~r~qir~d~~qITGiaDi~Rga~~a~ETatAQ~IKsq~gS~RIqe~qdevqR 444 (663) T protein:vir:34 365 FADKGGLRGVVDWFPLEPVVAALTSLRDYRRELVDALHQVTGMADIMRGASDPRETAMAQGVKAKFGSIRLQRLQDEVAR 444 (663) T ss_pred hhhhcCccchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccCcchhhHHHHHHHHHHhHHHHHHHHHHHH Confidence 12223 2232222222 3344555678889999998887665543 5668888778888888899999999999 Q ss_pred HHHHHHHHHHHHHHhcCCC---------------------------ccccceeeEEeCCCCCCCHHHHHHHHHH-Hhcc- Q lcl|Aclame:pro 381 AIRELLWFVCEYLKISGNK---------------------------SYDYKTVQITFNHSMIINEAEKIDMAAK-STGI- 431 (479) Q Consensus 381 ~l~~~~~li~~~~~~~~~~---------------------------~~~~~~i~i~f~~~~p~d~~e~a~~~~k-~~g~- 431 (479) ..+.++++...++.-.-.. ......++|.=..+.-.|..+.-+..++ +.++ T Consensus 445 ~arDi~ql~AEIl~~~~~~etl~~m~~~elp~~~ei~~~~~~L~n~~~r~~~ldIe~dsT~~~D~~~eK~~~~E~l~~i~ 524 (663) T protein:vir:34 445 FASDIQRLKAEVIAEHYDVASILAQANAEFTFDKELAPKAAELIKSRFSMYRVEVKPEAVSLQDFAALRNEKMEVLSGIA 524 (663) T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCcccchhHHHHHHhcCCCcceeeeeccCCCCcCChHHHHHHHHHHHHHHH Confidence 9999999988776532110 0111122333333333343333333322 2222 Q ss_pred -CChHH--HHHhCCCCCCHHHHHHHHHHHH----HHHHhhhhccCCCCCCCcC--CC Q lcl|Aclame:pro 432 -VSDET--IVSNHPWVEDVNDELERLKKQE----DTQKEYDDLIPNNQDGVID--ET 479 (479) Q Consensus 432 -is~et--~~~~l~~~~d~~~El~~i~~E~----~~~~~~~~~~~~~~~~~~d--et 479 (479) +++.. .+.+.|.....-.||-..-.-. .....+.+.+.....+.+- .+ T Consensus 525 ~~~qq~~pl~~q~p~~~p~l~Ellk~~~~~f~~~~qie~ai~~~~~~~e~aa~~~~~ 581 (663) T protein:vir:34 525 SFMQGVAPLAQQVPGSAPFLLQMLKWSVSGLRGSSTIEGVLDKAIAAAEEAQKQAAQ 581 (663) T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCChhhhHHHHHHHHHhhhHHHhhccCC Confidence 11111 1123332111111211110000 0000111111111111111 11 No 245 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=86.34 E-value=0.046 Score=27.90 Aligned_cols=422 Identities=12% Similarity=0.090 Sum_probs=161.4 Q ss_pred CCCcc---cCcHHHHHHHHh-----c-cChHH---------HHHHHHHH-HHHhhHHHHHHHHHHhccCCcccccccccc Q lcl|Aclame:pro 1 MLNIY---ISETDLIKVQLK-----K-ESTIN---------LVKVIEHY-ILKHRPEKYKQGEEYYYGNTDVNNKRRYYL 61 (479) Q Consensus 1 ~~~~~---~~~~~~~~~~~~-----~-~~~~~---------~~~~i~~~-~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~ 61 (479) |+..+ +.....-....+ . ..+.. .+..-..+ ...+...+|+.+-.+++-.. T Consensus 1 m~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~i~~~~~~~~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~---------- 70 (533) T protein:vir:10 1 MSQLFGFSLERAKKAPKGPSFVQKDNLDGSQPVSGGGYYGYTVDFDGQVRNEYQLISRYREMVLQPECDS---------- 70 (533) T ss_pred CccccccccccccccccCCCCCCCCcccccceeecccccceeeecccccchHHHHHHHHHHHhhccchhh---------- Confidence 33332 111000000000 0 00000 00000000 01112223333333333111 Q ss_pred cccccccccccCcceeecchHHHHHHHH-HhhhhccCeeecCCchhHHHH----H----HHHH-hcCHHHHHHHHHHHHH Q lcl|Aclame:pro 62 LDGAKVDDFTKVNNKAINNYHKLLVDQK-VGYSVGNPIVFNADDDNLTKL----L----NDLL-GEEFDDTITELYLNAS 131 (479) Q Consensus 62 ~~~~~~~~~~~~~~ri~~n~~~~iv~~~-a~~l~g~~~~~~~~~~~~~~~----~----~~~~-~n~~~~~~~~~~~~~~ 131 (479) =...||+.. +.-...+|+.+..++.+..+. + +.+. -=+|+....+..|.+. T Consensus 71 -------------------Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WY 131 (533) T protein:vir:10 71 -------------------AVDDIVNETICGNFDDVPVSVELSNLKVSDKIKKLIREEFGEILRLLDFENRSYEIFRRWY 131 (533) T ss_pred -------------------HHHHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhh Confidence 111122221 122234455555554332222 2 1121 1378889999999999 Q ss_pred hCCeEEEEEEeCCC----CceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCc Q lcl|Aclame:pro 132 NKGVEWLHPYINRK----GEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNS 207 (479) Q Consensus 132 ~~G~~~~~v~~d~~----~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~ 207 (479) +.|+.|...-+|.+ |-..+..+||+.+-++..-... ....++........-..+.-+-+|++.+... .+.+ T Consensus 132 VDgRi~fHkiid~~~pk~GI~ELr~lDPr~i~~vr~i~~~--~~~~~~~~~~~~~v~~~~~eyf~Ynp~g~~~---~~~~ 206 (533) T protein:vir:10 132 VDGRLFYHKVIDPDNPQGGLIELRYIDPRKIRKINETEQK--RPEQLRGLPLNQQLSPKSAEYFLYDPKGLKN---STTQ 206 (533) T ss_pred hcceEEEEEEecCCCccccceeeeeccccceeeeeeeecc--CCCccceeecchhhhccceeeeeeccccccc---cCCC Confidence 99999988777643 6667899999998775432110 0001111111000001111122233322110 0000 Q ss_pred cccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeee Q lcl|Aclame:pro 208 FIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLK 287 (479) Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~ 287 (479) ++-.+...+. ..| -|.+| .++..-.|-+...+-....| +++-|.+..-+..+.|-.-+. T Consensus 207 --------------~vkI~~dAI~-y~h-SGl~d----~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvF 265 (533) T protein:vir:10 207 --------------GLKIAPDSIC-YVH-SGIMD----LNKNMTLSHLHKAIKAVNQL-RMIEDSLVIYRLSRAPERRIF 265 (533) T ss_pred --------------ceecchhhee-eee-cccee----CCCCceeccchHhHHHHHhh-HHHHhhHHHHhhhccccceEE Confidence 0000000000 001 00011 01111123344433333333 456777777788887755333 Q ss_pred cC--CccchhhH-------HHHhhc----------------ccce----ec---CCCCcceeeecCCCH-HHHHHHHHHH Q lcl|Aclame:pro 288 EY--PGTSLQEF-------IDNIRY----------------YKSI----KV---DGGGGVDKLEINIPV-EAKKELLDRL 334 (479) Q Consensus 288 g~--~~~~~~~~-------~~~~~~----------------~~~~----~~---~~~~~~~~~~~~~~~-~~~~~~~~~l 334 (479) -. +..+.... ..+.+. ...+ -+ +++.+.+.-+.+... -+-.+-+.-+ T Consensus 266 YIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnLgem~DV~YF 345 (533) T protein:vir:10 266 YIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLEDFWLPRREGGRGTEITTLPGGQNLGELEDVKYF 345 (533) T ss_pred EEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhHhhhcccccCCCCccceeeccccCCcChHHHHHHH Confidence 21 11121111 111110 0000 01 122233333333221 1122233334 Q ss_pred HHHHHHHhCCCCC--ccc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc--ceee Q lcl|Aclame:pro 335 EKNIIIFGQGVNP--ESQ---NTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDY--KTVQ 407 (479) Q Consensus 335 ~~~i~~~s~~~~~--~~~---~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~--~~i~ 407 (479) ++-++.--.+|-- ..+ ++|.. .+|--.+......+.+.+..|...+.++++.=+-+-++....+.+. ..+. T Consensus 346 ~kKLY~aLnVP~SRl~~e~~f~~Gr~--~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~ 423 (533) T protein:vir:10 346 QKKLYKSLNVPGSRLETETTFNVGRA--AEITRDEVKFQKFVARLRKRFSELFTDLLKTQLVLKGVISIEEWDQMKEHIQ 423 (533) T ss_pred HHHHHHHhCCCccccCCCCccccccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcce Confidence 4444444444421 111 12322 2333334444556777777777777777764333333333222222 4577 Q ss_pred EEeCCCCCCCHHHHHH-------HHHHH---hc-cCChHHHHHhCCCCCC--HHHHHHHHHHHHHH--------HHhhhh Q lcl|Aclame:pro 408 ITFNHSMIINEAEKID-------MAAKS---TG-IVSDETIVSNHPWVED--VNDELERLKKQEDT--------QKEYDD 466 (479) Q Consensus 408 i~f~~~~p~d~~e~a~-------~~~k~---~g-~is~et~~~~l~~~~d--~~~El~~i~~E~~~--------~~~~~~ 466 (479) +.|..--.-.+...++ ++..+ +| .+|.+++.+.+=-.+| ..++.++|++|... +.+... T Consensus 424 ~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~~~~~~~ 503 (533) T protein:vir:10 424 YDYIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVEYMRRQVLKQTDVEMKEIDKQIESEMESGIIADPAAEMDPAM 503 (533) T ss_pred EeeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCCcchhhHHh Confidence 7775443333433333 33333 24 4799999987533443 44666777777542 111111 Q ss_pred cc--CCCCCCCcCCC Q lcl|Aclame:pro 467 LI--PNNQDGVIDET 479 (479) Q Consensus 467 ~~--~~~~~~~~det 479 (479) .. |.-.+..+|+. T Consensus 504 ~~~~~~~~~~~~~~~ 518 (533) T protein:vir:10 504 AAGDPDAGGAPAEEV 518 (533) T ss_pred cCCCCCcCCcccccC Confidence 11 11111122211 No 246 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=81.26 E-value=0.087 Score=26.39 Aligned_cols=416 Identities=12% Similarity=0.042 Sum_probs=154.9 Q ss_pred CCCcccCcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n 80 (479) |+++ .......++.-+.+....- .+ ...-.||+..-+++..+.. ........ ... T Consensus 1 ~~~~--------~~~~~gl~p~rl~~i~~~~-~~------~~~~~~~~~~~~~Lr~~~~----~~ly~~m~------~D~ 55 (488) T protein:vir:95 1 MADI--------TETQESLPPFRMGEVGSLG-LK------VKNGRIYEEPRQALRFPES----IKTFQLMM------RDP 55 (488) T ss_pred CCCc--------cccCCCCCHHHHHHHHHHh-hc------cccchhhccchhhhcccch----HHHHHHHh------hCh Confidence 4433 2333445554444443210 00 0011222211111110000 00000000 124 Q ss_pred hHHHHHHHHHhhhhccCeeecCCc-----hh---HHHHHHHHHhc---CHHHHHHHHHHHHHhCCeE-EEEEEeCCCCce Q lcl|Aclame:pro 81 YHKLLVDQKVGYSVGNPIVFNADD-----DN---LTKLLNDLLGE---EFDDTITELYLNASNKGVE-WLHPYINRKGEF 148 (479) Q Consensus 81 ~~~~iv~~~a~~l~g~~~~~~~~~-----~~---~~~~~~~~~~n---~~~~~~~~~~~~~~~~G~~-~~~v~~d~~~~~ 148 (479) ...-.+.+....+.+-+.++...+ .. ..++++.+.++ .|...+..+. ++.-||.+ ++.+|....+.. T Consensus 56 hi~s~l~~Rk~av~~~~w~v~p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~ 134 (488) T protein:vir:95 56 AVAASVNIIKMFVRKVNWRFVPPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKK 134 (488) T ss_pred HHHHHHHHHHHHHhcCCceEecCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHH-Hhhcccceeeeeeeecccccc Confidence 556667777788888888876421 11 22445555432 3556666664 78889986 456664322211 Q ss_pred EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccc Q lcl|Aclame:pro 149 KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHF 228 (479) Q Consensus 149 ~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (479) ................-.. .+..-+++|... .++.......-..+..... .+.. T Consensus 135 ~~~~~~~~dg~~~~~~i~~-Rpq~~~~~f~~d-~d~~l~~~~~~~~~~~~~~------------------------~~~~ 188 (488) T protein:vir:95 135 GKYQSKFDDGLIGWAKLPI-RNQSTLDKWYFD-EDFRRVTGVRQNLRNVSHI------------------------AGAI 188 (488) T ss_pred ccccccccCCeeeeeeeee-cCcccccceeec-cCCCceeeccccccccccc------------------------cccc Confidence 1111000000000000000 000001111111 1111100000000000000 0000 Q ss_pred ccccccccccccc----eEEec----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCC---ccchhhH Q lcl|Aclame:pro 229 RINNKEQGWGKVP----FIPFK----NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYP---GTSLQEF 297 (479) Q Consensus 229 ~~~~~~~~~g~vP----vv~~~----n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~---~~~~~~~ 297 (479) ........ ..+| |++-. .+..|.|.+..+--..--=+..+..++..++.+..|+.+..+.. ....++. T Consensus 189 ~~~~~~~~-~~lP~~kfi~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e 267 (488) T protein:vir:95 189 NLGERPLT-RKLPRAKFMLFKYDDEYGNPEGRSPLLNAYVPWKYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPE 267 (488) T ss_pred cccccccc-ccccccceEEEeecCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEeeccCCCCCcccHH Confidence 00000000 0122 11111 24567777766544443334556677777887777777766522 1111111 Q ss_pred ----HH---Hhhc------ccceecCCCCcceee---------ec-CCCHHHHHHHHHHHHHHHHHHhCCCCCccccccc Q lcl|Aclame:pro 298 ----ID---NIRY------YKSIKVDGGGGVDKL---------EI-NIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGD 354 (479) Q Consensus 298 ----~~---~~~~------~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~ 354 (479) .. .+.. ...+.++.+.++++. .. ......+...++...+.|...--+..++.+..+ T Consensus 268 ~~~l~~a~~~i~~~~~~~~~ag~iiP~g~~~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~iLGqtLT~~~~~- 346 (488) T protein:vir:95 268 KKAFVQYCKTVVNDMIANDRAGLIWPRYIDPDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAFMSDVLAMGQSK- 346 (488) T ss_pred HHHHHHHHHHHHHHhhccchhheeeccccccccchhhhhhhccccccCCchhHHHHHHHHHHHHHHHHhccccccccCc- Confidence 11 1111 112234444433331 11 123345777788777777654433333322111 Q ss_pred ccHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHHh--c Q lcl|Aclame:pro 355 KSGVAL-KFLYSLLDLKCSKTEKKFKKAIR-ELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKST--G 430 (479) Q Consensus 355 ~Sg~Ai-~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~~--g 430 (479) .++-|+ +....-....+..-.+.+...+. ++++-++. ...+. ......+.|....+.|..+.++++.+++ | T Consensus 347 ~Gs~Al~~vh~ev~~~i~~aDa~~i~~tln~~li~~l~~---~Nfg~--~~~~P~~~~~~~e~~Dl~~~ae~~~~L~~~G 421 (488) T protein:vir:95 347 YGSFSLADSKTSLLAMSVDILLKQIKNVINRDLVAQTYA---LNMWD--DEEHVQITYDDIETPDLEAIGSYIQKTVAVG 421 (488) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCC--CCCccEEEecCcChhhHHHHHHHHHHHHhCC Confidence 111111 11111122223333344444443 33333332 22221 1223578888889999999999998874 6 Q ss_pred c-CC----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 431 I-VS----DETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 431 ~-is----~et~~~~l~~~~d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) + ++ .+.+.+.++. ..++.. +.+..-.. .......+......+..| T Consensus 422 ~~i~~~~~~~~i~e~~gi-p~~~~~-e~~~~~~~--~~~~~~~~~~~~~~~~~~ 471 (488) T protein:vir:95 422 ALEVDKELSNKLREHIGL-PPADES-QPVSEKLS--PNSQSRSGDGYKTAGEGT 471 (488) T ss_pred CccccHHHHHHHHHHhCC-CCCCCC-ccccccCC--CCCCCCCCcccCCCcccC Confidence 5 66 3456666664 211110 00000000 000000000000011111 No 247 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=81.06 E-value=0.089 Score=26.34 Aligned_cols=389 Identities=11% Similarity=0.075 Sum_probs=157.6 Q ss_pred CCCcccCcHHH----HHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcce Q lcl|Aclame:pro 1 MLNIYISETDL----IKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNK 76 (479) Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~r 76 (479) |-+.- .+.. +..+..-.+..+| ..+|+.+..+++-.. T Consensus 45 ~~~~~--~~g~~~~~~~~~~~~~~~~eL------------I~~YR~ma~~pEvd~------------------------- 85 (516) T protein:vir:10 45 EGEAT--YNAVMQQFFGIDNNISGTKDL------------INTYRQLINNPEVER------------------------- 85 (516) T ss_pred CCccc--ccceeeeeeccccccchHHHH------------HHHHHHHhhccchhh------------------------- Confidence 11110 0000 0000111111111 223444433333211 Q ss_pred eecchHHHHHHHH-HhhhhccCeeecCCchhHHH----HH----HHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeC--C Q lcl|Aclame:pro 77 AINNYHKLLVDQK-VGYSVGNPIVFNADDDNLTK----LL----NDLL-GEEFDDTITELYLNASNKGVEWLHPYIN--R 144 (479) Q Consensus 77 i~~n~~~~iv~~~-a~~l~g~~~~~~~~~~~~~~----~~----~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d--~ 144 (479) =...||+.. +.--..+|+.+..++.++.+ .+ +.+. -=+|+....+..|.+.+.|+.|.....| + T Consensus 86 ----Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~~k 161 (516) T protein:vir:10 86 ----AVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTLFRRWYVDSRIFFHKIMPNPK 161 (516) T ss_pred ----HHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecCcc Confidence 111122211 11123445555544433221 12 1121 1378899999999999999998886665 2 Q ss_pred CCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCce----EEEEEEEeCCcEEEEEEcCCcccccccccccccc Q lcl|Aclame:pro 145 KGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNK----IKRVEYYTENDITYFIERGNSFIQEFLYDEYGKM 220 (479) Q Consensus 145 ~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~ 220 (479) +|-..+..++|+.+..+.. ..+.+.+|.. +..+-+|.++.. ++...+....... T Consensus 162 ~GI~Elr~lDPr~i~~vR~-------------i~~~~~~~~~v~~~~~e~~~Y~~~~~-~~~~~g~~~~~~~-------- 219 (516) T protein:vir:10 162 KGIAELRRLDPRFMEYYRE-------------IVTSDIGGTTIVKGYREFFIYTTGNE-GYSYNGRIFEPNT-------- 219 (516) T ss_pred ccceeeeeeCCcceeeEee-------------ecccccccchhhhhhhheeeeccCcc-ccccccceeCCCc-------- Confidence 4666788999998866432 1222222221 112233444332 2222221111000 Q ss_pred ccccccccccccccccccccce--EEecC-------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC-- Q lcl|Aclame:pro 221 TDIQEGHFRINNKEQGWGKVPF--IPFKN-------NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY-- 289 (479) Q Consensus 221 ~~~~~~~~~~~~~~~~~g~vPv--v~~~n-------~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~-- 289 (479) ++ +||- |.|.. ...-.|-+...+-....| +++-|.+..-+..+.|-.-+.-. T Consensus 220 ---------------~i-kI~~dAI~y~hSGL~d~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDv 282 (516) T protein:vir:10 220 ---------------RI-KIPRSAVVYASSGLMDCSDRGIIGYLHNAVKPANQL-KLLEDAMVIYRITRAPERRVFYIDV 282 (516) T ss_pred ---------------ce-eechhheeeecccceeCCCCceeeeehhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEec Confidence 00 0110 11111 111123344433333333 45667777778787775533321 Q ss_pred CccchhhH---HH----Hhhc----------------ccce----ec---CCCCcceeeecCCCH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 290 PGTSLQEF---ID----NIRY----------------YKSI----KV---DGGGGVDKLEINIPV-EAKKELLDRLEKNI 338 (479) Q Consensus 290 ~~~~~~~~---~~----~~~~----------------~~~~----~~---~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i 338 (479) +..+.... .. +.+. ...+ -+ +++.+.+.-+.+... -+-.+-+.-+++-+ T Consensus 283 GnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkL 362 (516) T protein:vir:10 283 GNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMDDVRWFNKKL 362 (516) T ss_pred CCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHH Confidence 11121111 00 1010 0000 01 122233333333221 11223334444444 Q ss_pred HHHhCCCCC--ccccccc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cceeeEEeC Q lcl|Aclame:pro 339 IIFGQGVNP--ESQNTGD---KSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYD--YKTVQITFN 411 (479) Q Consensus 339 ~~~s~~~~~--~~~~~g~---~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~--~~~i~i~f~ 411 (479) +.--.+|-- ..++.++ --+.+|--.+......+.+.+..|...+.++++.=+-+-++....+.+ ...+.+.|. T Consensus 363 y~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~ 442 (516) T protein:vir:10 363 YEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFH 442 (516) T ss_pred HHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEee Confidence 554455522 1111111 122223223333445567777777777777766433333333322222 245777775 Q ss_pred CCCCCCHHHHHH-------HHHHH---hc-cCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCCcCC Q lcl|Aclame:pro 412 HSMIINEAEKID-------MAAKS---TG-IVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVIDE 478 (479) Q Consensus 412 ~~~p~d~~e~a~-------~~~k~---~g-~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~~de 478 (479) .--.-.+...++ +++.+ +| .+|.+++.+.+=-.+| ..+|-++|++|.. +..... +.+++ T Consensus 443 ~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~e~k~I~~E~~------~~~~~~--p~~~~ 514 (516) T protein:vir:10 443 QDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDYVMKNILQMTEEQIAQEEKQIEQEAG------IKRFQN--PENED 514 (516) T ss_pred ecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhhHHHHHHHHHHhhh------CCCCCC--CCccc Confidence 444433443333 33333 24 6999999988533443 3344555555432 222221 22222 Q ss_pred C Q lcl|Aclame:pro 479 T 479 (479) Q Consensus 479 t 479 (479) . T Consensus 515 ~ 515 (516) T protein:vir:10 515 D 515 (516) T ss_pred c Confidence 3 No 248 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=81.06 E-value=0.089 Score=26.34 Aligned_cols=389 Identities=11% Similarity=0.075 Sum_probs=157.6 Q ss_pred CCCcccCcHHH----HHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcce Q lcl|Aclame:pro 1 MLNIYISETDL----IKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNK 76 (479) Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~r 76 (479) |-+.- .+.. +..+..-.+..+| ..+|+.+..+++-.. T Consensus 45 ~~~~~--~~g~~~~~~~~~~~~~~~~eL------------I~~YR~ma~~pEvd~------------------------- 85 (516) T protein:vir:10 45 EGEAT--YNAVMQQFFGIDNNISGTKDL------------INTYRQLINNPEVER------------------------- 85 (516) T ss_pred CCccc--ccceeeeeeccccccchHHHH------------HHHHHHHhhccchhh------------------------- Confidence 11110 0000 0000111111111 223444433333211 Q ss_pred eecchHHHHHHHH-HhhhhccCeeecCCchhHHH----HH----HHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeC--C Q lcl|Aclame:pro 77 AINNYHKLLVDQK-VGYSVGNPIVFNADDDNLTK----LL----NDLL-GEEFDDTITELYLNASNKGVEWLHPYIN--R 144 (479) Q Consensus 77 i~~n~~~~iv~~~-a~~l~g~~~~~~~~~~~~~~----~~----~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d--~ 144 (479) =...||+.. +.--..+|+.+..++.++.+ .+ +.+. -=+|+....+..|.+.+.|+.|.....| + T Consensus 86 ----Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~~k 161 (516) T protein:vir:10 86 ----AVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTLFRRWYVDSRIFFHKIMPNPK 161 (516) T ss_pred ----HHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecCcc Confidence 111122211 11123445555544433221 12 1121 1378899999999999999998886665 2 Q ss_pred CCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCce----EEEEEEEeCCcEEEEEEcCCcccccccccccccc Q lcl|Aclame:pro 145 KGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNK----IKRVEYYTENDITYFIERGNSFIQEFLYDEYGKM 220 (479) Q Consensus 145 ~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~ 220 (479) +|-..+..++|+.+..+.. ..+.+.+|.. +..+-+|.++.. ++...+....... T Consensus 162 ~GI~Elr~lDPr~i~~vR~-------------i~~~~~~~~~v~~~~~e~~~Y~~~~~-~~~~~g~~~~~~~-------- 219 (516) T protein:vir:10 162 KGIAELRRLDPRFMEYYRE-------------IVTSDIGGTTIVKGYREFFIYTTGNE-GYSYNGRIFEPNT-------- 219 (516) T ss_pred ccceeeeeeCCcceeeEee-------------ecccccccchhhhhhhheeeeccCcc-ccccccceeCCCc-------- Confidence 4666788999998866432 1222222221 112233444332 2222221111000 Q ss_pred ccccccccccccccccccccce--EEecC-------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC-- Q lcl|Aclame:pro 221 TDIQEGHFRINNKEQGWGKVPF--IPFKN-------NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY-- 289 (479) Q Consensus 221 ~~~~~~~~~~~~~~~~~g~vPv--v~~~n-------~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~-- 289 (479) ++ +||- |.|.. ...-.|-+...+-....| +++-|.+..-+..+.|-.-+.-. T Consensus 220 ---------------~i-kI~~dAI~y~hSGL~d~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDv 282 (516) T protein:vir:10 220 ---------------RI-KIPRSAVVYASSGLMDCSDRGIIGYLHNAVKPANQL-KLLEDAMVIYRITRAPERRVFYIDV 282 (516) T ss_pred ---------------ce-eechhheeeecccceeCCCCceeeeehhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEec Confidence 00 0110 11111 111123344433333333 45667777778787775533321 Q ss_pred CccchhhH---HH----Hhhc----------------ccce----ec---CCCCcceeeecCCCH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 290 PGTSLQEF---ID----NIRY----------------YKSI----KV---DGGGGVDKLEINIPV-EAKKELLDRLEKNI 338 (479) Q Consensus 290 ~~~~~~~~---~~----~~~~----------------~~~~----~~---~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i 338 (479) +..+.... .. +.+. ...+ -+ +++.+.+.-+.+... -+-.+-+.-+++-+ T Consensus 283 GnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkL 362 (516) T protein:vir:10 283 GNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMDDVRWFNKKL 362 (516) T ss_pred CCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHH Confidence 11121111 00 1010 0000 01 122233333333221 11223334444444 Q ss_pred HHHhCCCCC--ccccccc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cceeeEEeC Q lcl|Aclame:pro 339 IIFGQGVNP--ESQNTGD---KSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYD--YKTVQITFN 411 (479) Q Consensus 339 ~~~s~~~~~--~~~~~g~---~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~--~~~i~i~f~ 411 (479) +.--.+|-- ..++.++ --+.+|--.+......+.+.+..|...+.++++.=+-+-++....+.+ ...+.+.|. T Consensus 363 y~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~ 442 (516) T protein:vir:10 363 YEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFH 442 (516) T ss_pred HHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEee Confidence 554455522 1111111 122223223333445567777777777777766433333333322222 245777775 Q ss_pred CCCCCCHHHHHH-------HHHHH---hc-cCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCCcCC Q lcl|Aclame:pro 412 HSMIINEAEKID-------MAAKS---TG-IVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVIDE 478 (479) Q Consensus 412 ~~~p~d~~e~a~-------~~~k~---~g-~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~~de 478 (479) .--.-.+...++ +++.+ +| .+|.+++.+.+=-.+| ..+|-++|++|.. +..... +.+++ T Consensus 443 ~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~e~k~I~~E~~------~~~~~~--p~~~~ 514 (516) T protein:vir:10 443 QDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDYVMKNILQMTEEQIAQEEKQIEQEAG------IKRFQN--PENED 514 (516) T ss_pred ecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhhHHHHHHHHHHhhh------CCCCCC--CCccc Confidence 444433443333 33333 24 6999999988533443 3344555555432 222221 22222 Q ss_pred C Q lcl|Aclame:pro 479 T 479 (479) Q Consensus 479 t 479 (479) . T Consensus 515 ~ 515 (516) T protein:vir:10 515 D 515 (516) T ss_pred c Confidence 3 No 249 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=80.97 E-value=0.09 Score=26.32 Aligned_cols=351 Identities=10% Similarity=-0.004 Sum_probs=139.2 Q ss_pred HHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecCCchhHH-HHHHHHH--h Q lcl|Aclame:pro 40 YKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLT-KLLNDLL--G 116 (479) Q Consensus 40 ~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~-~~~~~~~--~ 116 (479) +..+.+++. ++.-+... .+...... .....-.........|+.+++-+..-|+++--.+.... .+...+. - T Consensus 1 Mg~f~~~f~-~~~~~~~~----~~~~~~~~-~~~~~a~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~l~~lL~~~P 74 (385) T protein:vir:95 1 MGLFDSVFK-RHSELSWM----YDLEFLQD-KSKKAYLKQIALNTVVEMVARTISQSEFRVMKNNTKEKGTLYYLLNVRP 74 (385) T ss_pred Cchhhhhhc-cCcccccc----cchhhhhc-cchhhhhhhHHHHHHHHHHHHHHcccceeeeecCccccchHHHHHhccc Confidence 111111111 11000000 00000000 00000112344556788888888888877532222221 2222222 1 Q ss_pred cC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCceE--EEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEE Q lcl|Aclame:pro 117 EE---FDDTITELYLNASNKGVEWLHPYINRKGEFK--YVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVE 191 (479) Q Consensus 117 n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~--i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 191 (479) |. -..+...++...+.+|.+|++... ++... ..++.|... .++.. .++... .++ ..... T Consensus 75 N~~~t~~~f~~~~~~~l~l~Gna~i~~~~--~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~-~~~--~~~~~ 138 (385) T protein:vir:95 75 NRNQNAVDFWQKFIFKLIMDNEVLVVKND--EGHFFVADDFEKEDEL-GLYSH----------RFTNVL-VND--FEFKR 138 (385) T ss_pred CcCCCHHHHHHHHHHHHhhcCceEEEEec--CCCeeecccccccccc-ccccc----------cceeee-ecc--cceee Confidence 32 345556778889999999976543 33321 111111111 11100 000000 000 00111 Q ss_pred EEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 192 YYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNIST 271 (479) Q Consensus 192 ~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~ 271 (479) .+.++.+.+++.. ++ .....|.|.+..+...+. . T Consensus 139 ~~~~~eiih~~~~------------------------------~~---------~~~~~G~s~~~~~~~~i~-------~ 172 (385) T protein:vir:95 139 VFTMDDVIYLKYN------------------------------NQ---------KLDAFSLGLFEDYGEIFG-------R 172 (385) T ss_pred eeccccEEEecCC------------------------------CC---------CcccccchHHHHHHHHHH-------H Confidence 1222222221100 00 001235565544443332 2 Q ss_pred HHHHHHHhccc--eeeeecCCccchh---hHHHHh---------hcccceecCCCCcceeeecCC------CHHHHHHHH Q lcl|Aclame:pro 272 LADNLDEIQEV--IYVLKEYPGTSLQ---EFIDNI---------RYYKSIKVDGGGGVDKLEINI------PVEAKKELL 331 (479) Q Consensus 272 ~~~~~~~~~~p--~l~~~g~~~~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 331 (479) ......+.+.| ++++.+....+.+ .....+ ..+.++.++++.+.+.++... ....+.+.. T Consensus 173 ~~~~~~~~~~~~g~l~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~~~e~~ 252 (385) T protein:vir:95 173 MIDLQMLNNQIRGILKVDATKFYNKEKQKELQAYIDTLFDAFQNNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSELNELK 252 (385) T ss_pred HHHHHHhcCCCceEEEeCCccCCCHHHHHHHHHHHHHHhhhhhhcCCceEEcCCCceeEeecccccccCCHHHHHHHHHH Confidence 22223333333 3334332111111 111111 122345566666666665322 134577777 Q ss_pred HHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccceeeEE Q lcl|Aclame:pro 332 DRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKS--YDYKTVQIT 409 (479) Q Consensus 332 ~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~--~~~~~i~i~ 409 (479) +.....|+..-++|+.-.++. ..+.+ +.....+...|.-.++.|...+...-... .....+++. T Consensus 253 ~~~~~~Ia~~fgVpp~~l~~~-~sn~e-------------~~~~~~~~~~l~P~~~~ie~~l~~~L~~~~~~~~~~~~fd 318 (385) T protein:vir:95 253 KTVLTDVARMIGVPPSLVLGE-MADLE-------------KTIESYLQFCINPLLRKIEAELNSKFFYQDEYLNDDMHIK 318 (385) T ss_pred HHHHHHHHHHhCCCHHHhcCC-CcCHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhcccceEEEe Confidence 778888888878776443211 11111 11223333344444444444333211111 112245666 Q ss_pred eCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHHHHHHHHHHHHHHHhhhhccCCCCCCCcCC Q lcl|Aclame:pro 410 FNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVNDELERLKKQEDTQKEYDDLIPNNQDGVIDE 478 (479) Q Consensus 410 f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~El~~i~~E~~~~~~~~~~~~~~~~~~~de 478 (479) +...+..|..+.++++.++ .|+++.-.++++++.-. ++....-.+-.. ....++. +.++..+| T Consensus 319 ~~~l~~~D~~~~~~~~~~~~~~g~lt~NE~R~~~g~~p~~~~~gd~~~~~~n---~~~~~~~---kgge~~~e 385 (385) T protein:vir:95 319 VVGIDKRDPLKLSEAIDKLVASGTFTRNQVRIMTGEEPADDPELDKFIITKN---LQSADAF---KGGESNEE 385 (385) T ss_pred chhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccc---ceecccc---cCCCCCCC Confidence 6777888999999999887 57999999998876532 111100000000 0001111 11122222 No 250 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=80.49 E-value=0.094 Score=26.20 Aligned_cols=300 Identities=7% Similarity=0.020 Sum_probs=102.2 Q ss_pred cCCcccccccccc------cccc-cccccccCcceeecchHHHHHHHHHhhhhccCe-eecC------Cch--------h Q lcl|Aclame:pro 49 GNTDVNNKRRYYL------LDGA-KVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPI-VFNA------DDD--------N 106 (479) Q Consensus 49 g~~~~~~~~~~~~------~~~~-~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~-~~~~------~~~--------~ 106 (479) -...+........ -..+ ..++. -+++-.+.+...+.+....| + +|| ...+ .+. . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~-~-epp~~~~~La~l~~~n~~h~~~i~~k 76 (348) T protein:vir:26 1 MTEQLIHSHTTDGTESKSVYSFDPNPEPV--DTNSWMTRYCELFYNDFDDY-W-EPPISLKGLAEIANANGYHGSLLKAR 76 (348) T ss_pred CCccccchhhccccCCceEEEecCCCeee--cCcchHHHHHHHHhcCCCcc-c-cCCCCHHHHHHHHhhhhhhhhhHhhh Confidence 1110000000000 0000 01100 00000111111111110000 1 111 1100 000 0 Q ss_pred HHHHHHHHHhcC-H-HHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEeeeccc Q lcl|Aclame:pro 107 LTKLLNDLLGEE-F-DDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDID 183 (479) Q Consensus 107 ~~~~~~~~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~ 183 (479) .+.+...+.-|. + ...+.+++.+.+.+|.+|+.+..+..|++ .+..++|..+.+.-| . . +|... .+ T Consensus 77 ~N~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v~~~~d-~---~------~~~~~-~~ 145 (348) T protein:vir:26 77 ANYVAGRFMNGGGLPMYKMNSACWDYFGLGMSAFVKIRSYLKNVIALEPLPMVHMRKRKN-G---D------FVQLL-RN 145 (348) T ss_pred hhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEecCceeEeeec-C---c------EEEEE-ec Confidence 011111122232 2 23456677889999999999999888875 466677665543211 1 0 11110 11 Q ss_pred CceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHH Q lcl|Aclame:pro 184 GNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLID 263 (479) Q Consensus 184 ~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid 263 (479) +.. ..|.++.+.+++. +++. +...|.|.+...+..+. T Consensus 146 g~~----~~f~~~dIiHir~------------------------------~~~~---------~~~~Gls~~~~a~~si~ 182 (348) T protein:vir:26 146 NEQ----KVFKAKDVIFIPQ------------------------------YDPQ---------QQIYGLPDYLGSIQSSL 182 (348) T ss_pred CeE----EEEcCccEEEEcC------------------------------CCCC---------CCcccccHHHHHHHHHH Confidence 111 1122233322210 0000 12347777665554443 Q ss_pred HHHHHHHHHHHHHHHhccceeee--ecCCcc--chhhHHHHhhc-------ccceec-CC--CCcceeeec--CCCHHHH Q lcl|Aclame:pro 264 IYDNNISTLADNLDEIQEVIYVL--KEYPGT--SLQEFIDNIRY-------YKSIKV-DG--GGGVDKLEI--NIPVEAK 327 (479) Q Consensus 264 ~~~~~~s~~~~~~~~~~~p~l~~--~g~~~~--~~~~~~~~~~~-------~~~~~~-~~--~~~~~~~~~--~~~~~~~ 327 (479) .-+....-...-++..+.|-.++ ++.... ..+.....++. +..+.+ ++ +.++++... ......+ T Consensus 183 l~~~a~~~~~~~f~NGa~pg~Il~~~~~~ls~e~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~~Gi~~~pis~~~~d~qf 262 (348) T protein:vir:26 183 LNRDATLFRRRYYLNGAHMGFIFYATDPNLSEADEKALKEKIASSKGIGNFRSMFVNIPNGKEKGIQLIPVGDIATKDEF 262 (348) T ss_pred HHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcccccceeEEcCCCCccceeEEEccCChhHHHH Confidence 22222212222234445555554 332111 11112122211 112222 11 223444433 2334457 Q ss_pred HHHHHHHHHHHHHHhCCCCCccccc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 328 KELLDRLEKNIIIFGQGVNPESQNT-------GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKS 400 (479) Q Consensus 328 ~~~~~~l~~~i~~~s~~~~~~~~~~-------g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~ 400 (479) .+..+..+..|...-..|+.-.+.. +++...+..+.... +.=.++.+..++ .+.+... T Consensus 263 ~e~k~~t~~dIa~af~VPp~llGi~~~~~~~~sn~e~~~~~f~~~~----l~P~~~~ie~~l-------n~~l~~~---- 327 (348) T protein:vir:26 263 ERIKNITAQDIFVGHRFPAGMGGMLPQQGANVPDPLKVSQVYDFYE----VIPVCKRFMDAV-------NNDPEIP---- 327 (348) T ss_pred HHHHHhhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHH----HHHHHHHHHHHH-------hhhhCCC---- Confidence 7777777888888888886543321 22221222111111 111111111111 1111111 Q ss_pred cccceeeEEeCCCCCCCHHHHH Q lcl|Aclame:pro 401 YDYKTVQITFNHSMIINEAEKI 422 (479) Q Consensus 401 ~~~~~i~i~f~~~~p~d~~e~a 422 (479) ....+++.|++..-++....+ T Consensus 328 -~~~~~~fdl~~~~e~~~~~a~ 348 (348) T protein:vir:26 328 -DNLKLKFNLNPGVESANGSAV 348 (348) T ss_pred -CccEEEEecCcccccchhhcC Confidence 112334444433322222222 No 251 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=79.95 E-value=0.099 Score=26.08 Aligned_cols=400 Identities=11% Similarity=0.037 Sum_probs=154.7 Q ss_pred CCCcccCc--HH-HHHHHHhccChHHHHHH--HHHHHHHhhHHHHHHHHHHhcc--CCcccccccccccccccccccccC Q lcl|Aclame:pro 1 MLNIYISE--TD-LIKVQLKKESTINLVKV--IEHYILKHRPEKYKQGEEYYYG--NTDVNNKRRYYLLDGAKVDDFTKV 73 (479) Q Consensus 1 ~~~~~~~~--~~-~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~yy~g--~~~~~~~~~~~~~~~~~~~~~~~~ 73 (479) |...+-+. -+ .=...+........... -+.+..-......+.+..|=.- .|+.. T Consensus 20 ~~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~~~pEV------------------- 80 (533) T protein:vir:58 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI------------------- 80 (533) T ss_pred hchhhcccCccCCCCCccccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhccCcch------------------- Confidence 44444221 00 00000000000000000 0000000000111111111110 01000 Q ss_pred cceeecchHHHHHHH-HHhhhhccCeeecCCchhHHHHHHHH--HhcCHHHHHHHHHHHHHhCCeEEEEEEeC-CC-Cce Q lcl|Aclame:pro 74 NNKAINNYHKLLVDQ-KVGYSVGNPIVFNADDDNLTKLLNDL--LGEEFDDTITELYLNASNKGVEWLHPYIN-RK-GEF 148 (479) Q Consensus 74 ~~ri~~n~~~~iv~~-~a~~l~g~~~~~~~~~~~~~~~~~~~--~~n~~~~~~~~~~~~~~~~G~~~~~v~~d-~~-~~~ 148 (479) .+=...||+. .+.--...|+.+..++.++.+.++.. .-.+|+....+..|.+.+.|+.|.....+ ++ |-. T Consensus 81 -----d~AideIvneaiv~d~~~~pV~v~l~~~e~s~~iK~kI~~lldf~~~~~~~fR~WYVDGriy~Hkiik~~k~GI~ 155 (533) T protein:vir:58 81 -----STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIE 155 (533) T ss_pred -----hhHHHhhhceeeEecCCCceeEeecccccccHHHHHHHHHHhcchhhhhHHHHhhhhcceeEEEeccCCcccchh Confidence 0111222222 22333566777776665555544432 22479999999999999999999888553 33 434 Q ss_pred EEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccc Q lcl|Aclame:pro 149 KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHF 228 (479) Q Consensus 149 ~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (479) .+..+||+.+-.+++.... . .+ -+|++..... ..+.. ....+.. T Consensus 156 elr~lDPr~i~~vr~~~t~--~----ey--------------yvy~~~~~~~--~s~~~--------------~~kI~~d 199 (533) T protein:vir:58 156 KFQVVSPYIFSKRYNPETD--T----WY--------------YVITDVYRNV--VSGYF--------------NEDIPEE 199 (533) T ss_pred hheecCCeeeEEEEeeccc--e----EE--------------Eeeccccccc--ccCcc--------------ccccchh Confidence 7899999999888765322 1 11 1222221110 00000 0000001 Q ss_pred ccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC--Cccch---hhHHH---- Q lcl|Aclame:pro 229 RINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY--PGTSL---QEFID---- 299 (479) Q Consensus 229 ~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~--~~~~~---~~~~~---- 299 (479) .+.-..+++-. .+...+.|-+..++-....| +++-+....-+..+.|-.-+.-. +..+. ++-.. T Consensus 200 aI~y~~SGl~d------~~~~~iisyLhkAiKp~NQL-kmiEDAlVIYRisRAPeRRvFYIDVGNlpk~KAeqYl~~im~ 272 (533) T protein:vir:58 200 DVIHFSHKIDT------NFFPYGRSYLESARAIWNQL-RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAM 272 (533) T ss_pred heeeeeecccc------CCCCceehhhhHHHHHHHHH-HHHHHHHHHHhhcCChhheEEEEeecCCCccCHHHHHHHHHH Confidence 11111111100 12334556665554444444 34666666677777764322211 11111 11110 Q ss_pred Hhhc--------ccc-----------e----ec---CCCCcceeeecCCCHHHHHHHHHHHHHHHHHHhCCCCCc---cc Q lcl|Aclame:pro 300 NIRY--------YKS-----------I----KV---DGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPE---SQ 350 (479) Q Consensus 300 ~~~~--------~~~-----------~----~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~s~~~~~~---~~ 350 (479) +.+. +.+ + -+ +++.+.+.-+.+...-+..+.+.=+++.++.--.+|-.- .+ T Consensus 273 k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgrgTEI~TLpGg~lgemeDV~YF~kkLy~ALnVP~sRl~~e~ 352 (533) T protein:vir:58 273 QYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLAEDVEYMLNRLISALKVPKAFIGYEG 352 (533) T ss_pred hcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCCccceeeecCCCCCCcHHHHHHHHHHHHHHhCCCeeecCCCC Confidence 1000 000 0 00 122233333333222233345555666666665666321 12 Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHH-------HH Q lcl|Aclame:pro 351 NTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEK-------ID 423 (479) Q Consensus 351 ~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~-------a~ 423 (479) ++|..| +|--.+......+.+.+..|..-|.+ .|++ .+. ....+..+.|..--.-.+... ++ T Consensus 353 ~fgr~~--eItRDEiKF~KFI~rLR~rF~~ll~~--qLil-----k~i--it~eew~~~f~~Dn~f~ElKe~Eil~~Ri~ 421 (533) T protein:vir:58 353 DVNAKN--TLATQDIKFNNTIKRIQGFFVEELER--MVRM-----NKE--FADQDFRLVMNRSNSIVEGERFAVIEQRIG 421 (533) T ss_pred CCccch--hhhHHHHHHHHHHHHHHHHHHHHHhc--cccc-----ccC--cchhheeeeeeccchHHHHHHHHHHHHHHH Confidence 233222 22112222233344444456555543 2222 222 122334567743333333332 33 Q ss_pred HHHHHhccCChHHHHHhC-CCCCCHHHHHHHHHHHHHHHHhhh------hccCCCCCCCcCC---C Q lcl|Aclame:pro 424 MAAKSTGIVSDETIVSNH-PWVEDVNDELERLKKQEDTQKEYD------DLIPNNQDGVIDE---T 479 (479) Q Consensus 424 ~~~k~~g~is~et~~~~l-~~~~d~~~El~~i~~E~~~~~~~~------~~~~~~~~~~~de---t 479 (479) ++..+.+.++++++.+.+ ...+|...+.+.|++|...-. +. +..+....|+.-+ + T Consensus 422 ~l~~~dpyvgk~yi~k~ILr~tdei~~q~e~ie~E~~~~~-~~~~~~~~e~~~~~~~~~~~~p~~~ 486 (533) T protein:vir:58 422 IAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGL-FDTGGFGEETTPADFLGERGSPIES 486 (533) T ss_pred HHHHhcchhhHHHHHHHHhcCChhhhHHHHHHHHhhcCCC-CCCCCcccccCCcccCccccCcccC Confidence 445556789999988774 444444444455555432100 00 0001111110000 0 No 252 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=79.59 E-value=0.1 Score=26.00 Aligned_cols=305 Identities=11% Similarity=0.076 Sum_probs=104.9 Q ss_pred HHHhhHHHHHHHHHHhccCCcccccccccccc--cccccccccCcceeecchHHHHHHHHHhhhhcc----CeeecC--- Q lcl|Aclame:pro 32 ILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLD--GAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGN----PIVFNA--- 102 (479) Q Consensus 32 ~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~--~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~----~~~~~~--- 102 (479) +.+.+ ++.++.-...+...... ........-.+-..+++- +.+.+-.--+..|+ |+...+ T Consensus 1 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~-~~~~~~~~~~~~~~~~~pp~~~~~la~ 69 (351) T protein:vir:78 1 MSKRR----------SRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNR-AEILDYVECWSNGEWFEPPVSFAGLAK 69 (351) T ss_pred CCCCC----------CCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCc-chhhhhhhhhccCceecCCCCHHHHHH Confidence 11111 11111000000000000 000000000000000000 00111111111122 111110 Q ss_pred ---Cch--------hHHHHHHHHHhcC-H-HHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCC Q lcl|Aclame:pro 103 ---DDD--------NLTKLLNDLLGEE-F-DDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQR 168 (479) Q Consensus 103 ---~~~--------~~~~~~~~~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~ 168 (479) .+. ..+.+...+.-|. + ...+.+++.+.+.+|.+|+.+..+..|++ .+..++|..+.+..+... T Consensus 70 ~~~~~~~h~~~l~~k~n~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~-- 147 (351) T protein:vir:78 70 SFRASTHHSSALFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSG-- 147 (351) T ss_pred HHhhhHhhhhhhhhhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEecCcceEEeeeCCe-- Confidence 000 0111111222232 2 23356778899999999999999888865 577777776655433220 Q ss_pred ceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCC Q lcl|Aclame:pro 169 ELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNN 248 (479) Q Consensus 169 ~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~ 248 (479) +|... ..+.. ..|.++.+.+++. +++ .+. T Consensus 148 -------~~~~~-~~~~~----~~~~~~eVihir~------------------------------~~~---------~~~ 176 (351) T protein:vir:78 148 -------FVYVN-GWQER----HEFAPDSVFQLVR------------------------------PDI---------NQE 176 (351) T ss_pred -------EEEEe-cCCeE----EEEccccEEEEcC------------------------------CCC---------CCC Confidence 11111 11111 1122222222210 000 012 Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeee--ecCCccc--hhhHHHHhhc-------ccceecCC---CCc Q lcl|Aclame:pro 249 EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL--KEYPGTS--LQEFIDNIRY-------YKSIKVDG---GGG 314 (479) Q Consensus 249 ~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~--~g~~~~~--~~~~~~~~~~-------~~~~~~~~---~~~ 314 (479) ..|.|++......+..-+....-..+-+.-.+.|-.++ ++..... .+.....++. +.++.+.. +.+ T Consensus 177 ~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pggIl~~~~~~ls~e~~~~lr~~~~~~~G~~N~~~~~v~~~~g~~~g 256 (351) T protein:vir:78 177 VYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDG 256 (351) T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcccccceeeecCCCCccc Confidence 35777776655554433332222233334445554444 3322111 1111112211 12222222 234 Q ss_pred ceeeecC--CCHHHHHHHHHHHHHHHHHHhCCCCCccccc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 VDKLEIN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNT-------GDKSGVALKFLYSLLDLKCSKTEKKFKKAIREL 385 (479) Q Consensus 315 ~~~~~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-------g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~ 385 (479) +++.... .....+.+..+..++.|...-.+|+.-.+.. +++......+... .|.-+ T Consensus 257 ~k~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~---------------~l~P~ 321 (351) T protein:vir:78 257 IQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRN---------------EIRPL 321 (351) T ss_pred eeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHH---------------HHHHH Confidence 4554433 3345577777888888888888886543322 1211111111111 11111 Q ss_pred HHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHH Q lcl|Aclame:pro 386 LWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKI 422 (479) Q Consensus 386 ~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a 422 (479) ++.+..+....+. + -+.|++..-..-.+.+ T Consensus 322 ~~~iee~n~~l~~---~----~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 322 QARFAELNDWLGD---E----VVRFDDYEIPPAPVAA 351 (351) T ss_pred HHHHHHHHhhcCc---c----ceecChhhhccccccC Confidence 1111111111111 0 1445433222111112 No 253 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=76.48 E-value=0.14 Score=25.35 Aligned_cols=240 Identities=12% Similarity=-0.040 Sum_probs=103.9 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQ 88 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~ 88 (479) |..+.....+.... .. ......-...-+.. .... .. .....-+..+-....|+. T Consensus 1 MglF~~~~~r~~~~------------~~-~~~~~~~~~~~~~~----------~~~~--~~-v~~~~al~~~~v~~~i~~ 54 (251) T protein:vir:46 1 MGIFYKNEKRDLQY------------NE-DDLQMMVQTLPSFQ----------GTKL--RQ-YKDIEAIRHSDIFTAVMM 54 (251) T ss_pred CCccccccccccCC------------Cc-cchhhhhhhhcccc----------CcCc--ce-echhhhhccHHHHHHHHH Confidence 11110000000000 00 00000000000000 0000 00 000011122334456788 Q ss_pred HHhhhhccCeeecCCchh--HHHHHHHHHh--c---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEE Q lcl|Aclame:pro 89 KVGYSVGNPIVFNADDDN--LTKLLNDLLG--E---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIP 160 (479) Q Consensus 89 ~a~~l~g~~~~~~~~~~~--~~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~ 160 (479) +++-+..-|+.+....+. ...+...+.. | ....+...+..+.+.+|.+|+.+..+.+|++ .+..++|..+.+ T Consensus 55 ia~~iA~lp~~~~~~~~~~~~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v 134 (251) T protein:vir:46 55 IASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIEL 134 (251) T ss_pred HHHhHhhCceEEeeCccccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCceEEE Confidence 888887778776433221 1123333322 3 2345667788899999999999999998876 589999999998 Q ss_pred EEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 161 IWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKV 240 (479) Q Consensus 161 ~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 240 (479) ..++.. .+.+. +.....+.. .....|.++.+.+++.- T Consensus 135 ~~~~~g--~~~~~---~~~~~~~~~--g~~~~~~~~diiH~r~~------------------------------------ 171 (251) T protein:vir:46 135 KSDARG--RLYYF---HQRIDSNGN--NIERNVKFEDMLDIKFY------------------------------------ 171 (251) T ss_pred EECCCC--cEEEE---EEEeccCCc--ceeEEECCccEEEecCc------------------------------------ Confidence 776532 22211 111111111 12233444444443210 Q ss_pred ceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhHHHHhhcccce--ec-CCCCccee Q lcl|Aclame:pro 241 PFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSI--KV-DGGGGVDK 317 (479) Q Consensus 241 Pvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~ 317 (479) | .+...|.|.++.+...+...........+.+...+.|-.+++-......++....++....- .. +..+.+.. T Consensus 172 ~----~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~~e~~~~~~~~~~~~~~g~~n~g~~~~ 247 (251) T protein:vir:46 172 S----LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFPKVLVELNKLGKLSY 247 (251) T ss_pred C----CCCeeecCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccccccc Confidence 0 01235778888777777666666666666667777776665433222122222222111000 00 11111111 Q ss_pred eecCCCH Q lcl|Aclame:pro 318 LEINIPV 324 (479) Q Consensus 318 ~~~~~~~ 324 (479) . .+. T Consensus 248 g---m~~ 251 (251) T protein:vir:46 248 S---MNQ 251 (251) T ss_pred c---cCC Confidence 0 000 No 254 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=76.20 E-value=0.14 Score=25.30 Aligned_cols=390 Identities=12% Similarity=0.087 Sum_probs=157.3 Q ss_pred CCCcccCcHHHHH------HHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCc Q lcl|Aclame:pro 1 MLNIYISETDLIK------VQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) Q Consensus 1 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (479) +-...... .-+. .+....+...| ..+|+.+..+++-.. T Consensus 47 ~~~~~~~~-~~~~q~~y~~~e~~~~~~~eL------------I~~YR~ma~~pEvd~----------------------- 90 (523) T protein:vir:68 47 ENEAQQTY-NAMFQRMFGSQEPGLKSTREL------------IDTYRNLMTNYEVDN----------------------- 90 (523) T ss_pred cccccccc-chhhhhhhhccccccchHHHH------------HHHHHHHhhccchhh----------------------- Confidence 11110000 0000 11111111111 223444333333211 Q ss_pred ceeecchHHHHHHHHH-hhhhccCeeecCCchhHHHH----H----HHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCC Q lcl|Aclame:pro 75 NKAINNYHKLLVDQKV-GYSVGNPIVFNADDDNLTKL----L----NDLL-GEEFDDTITELYLNASNKGVEWLHPYINR 144 (479) Q Consensus 75 ~ri~~n~~~~iv~~~a-~~l~g~~~~~~~~~~~~~~~----~----~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~ 144 (479) =...||+..+ .--..+|+.+..++.++.+. + +.+. -=+|+....+..|.+.+.|+.|.....|. T Consensus 91 ------Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~ 164 (523) T protein:vir:68 91 ------AVSEIVSDAIVYEDDTEVVSINLDNTKFSPNIKSMMLDEFNEVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDP 164 (523) T ss_pred ------HHHHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHHhheeeeEEEEEEEeeC Confidence 1112222221 11234455555444322222 1 1122 13788999999999999999999988874 Q ss_pred C----CceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCce----EEEEEEEeCCcEEEEEEcCCcccccccccc Q lcl|Aclame:pro 145 K----GEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNK----IKRVEYYTENDITYFIERGNSFIQEFLYDE 216 (479) Q Consensus 145 ~----~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~ 216 (479) + |-..+..++|+.+-.+..- ...+..+.. +.-+-+|.+.... +...+.... T Consensus 165 k~pk~GI~Elr~lDPr~i~~vr~i-------------~~~~~~g~~vi~~~~e~f~Y~~~~~~-~~~~g~~~~------- 223 (523) T protein:vir:68 165 KRPKEGIKELRRLDPRQVQYVREV-------------ITTTEAGVKIVKGYKEYFIYDTSHES-YACDGRIYE------- 223 (523) T ss_pred CCccccceeeeeeCCcceeEEEee-------------cCCCCcchhhhhhhhhheeecccccc-ccccccccC------- Confidence 3 6667899999977443221 111111110 1111223332211 111110000 Q ss_pred ccccccccccccccccccccccccce--EEecCC----CCCCchHHHHHHHHHHHH--HHHHHHHHHHHHhccceeeeec Q lcl|Aclame:pro 217 YGKMTDIQEGHFRINNKEQGWGKVPF--IPFKNN----EKCVSDLTFYKSLIDIYD--NNISTLADNLDEIQEVIYVLKE 288 (479) Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~vPv--v~~~n~----~~g~s~~~~v~~lid~~~--~~~s~~~~~~~~~~~p~l~~~g 288 (479) ++.--+||- |.|..+ ..|.-++.-+...+..+| +++-|.+..-+..+.|-.-+.- T Consensus 224 -----------------~~~~ikI~~dAI~y~hSGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFY 286 (523) T protein:vir:68 224 -----------------AGTKIKIPKAAIVYAHSGLVDCCGKNIIGYLHRAIKPANQLKLLEDAVVIYRITRAPDRRVWY 286 (523) T ss_pred -----------------CCcceecchhheeeeeccceeCCCCceeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEE Confidence 000001111 111111 011112222333344444 4566777777888877553332 Q ss_pred --CCccchhhH---HH----Hhhcc--------c--------ce----ec---CCCCcceeeecCC--CHHHHHHHHHHH Q lcl|Aclame:pro 289 --YPGTSLQEF---ID----NIRYY--------K--------SI----KV---DGGGGVDKLEINI--PVEAKKELLDRL 334 (479) Q Consensus 289 --~~~~~~~~~---~~----~~~~~--------~--------~~----~~---~~~~~~~~~~~~~--~~~~~~~~~~~l 334 (479) ++..+.... .. +.+.. . .+ -+ +++.+.+.-+.+. +.. ..+-+.-+ T Consensus 287 IDvGnlPk~KAeqYl~~im~k~kNKlvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlg-em~DV~YF 365 (523) T protein:vir:68 287 VDTGNMPSRKAAEHMQHVMNTMKNRIAYDATTGKIKNQQHIMSMTEDYWLQRRDGKAVTEVDTLPGADNTG-NMEDVRWF 365 (523) T ss_pred EecCCCCchhHHHHHHHHHHhhcceeEEeccCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcC-hHHHHHHH Confidence 111221111 11 11110 0 00 01 1222333333332 221 22233444 Q ss_pred HHHHHHHhCCCCCc--cc----ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc--cee Q lcl|Aclame:pro 335 EKNIIIFGQGVNPE--SQ----NTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDY--KTV 406 (479) Q Consensus 335 ~~~i~~~s~~~~~~--~~----~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~--~~i 406 (479) ++-++.--.+|--- .+ .+|. |.+|--.+......+.+.+..|...+.++++.=+-+-++....+.+. ..+ T Consensus 366 ~kkLy~aLnVP~sRl~~~~~~f~~Gr--~~EItRDEikF~KFI~rLR~rFs~lf~~~Lk~qLilKgiit~eew~~i~~~I 443 (523) T protein:vir:68 366 RNALYMALRIPITRIPSDQGGIQFDA--GTSITRDELSFGKFIRELQHKFEEIFLDPLKTNLILKGIITEDEWNDEINNI 443 (523) T ss_pred HHHHHHHhCCcceeecCCCcceeccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcc Confidence 44444444555211 11 1232 22333334445556777777777777777764333333333222222 457 Q ss_pred eEEeCCCCCCCHHHHHH-------HHHHHh---c-cCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCC Q lcl|Aclame:pro 407 QITFNHSMIINEAEKID-------MAAKST---G-IVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQD 473 (479) Q Consensus 407 ~i~f~~~~p~d~~e~a~-------~~~k~~---g-~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~ 473 (479) .+.|..--.-.+...++ +++.+. | .+|.+++.+.+=-.+| ..++.++|++|.. +....+.+ T Consensus 444 ~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~kqI~~E~k------~~~~~~p~ 517 (523) T protein:vir:68 444 KIKFHRDSYFSELKDAEILERRINMLQMAEPFIGKYISHRTAMKDILQMSDEEIEQEAKQIEEESK------EARFQDPD 517 (523) T ss_pred eEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhh------cCCCCCCc Confidence 77775444433433333 333343 3 4799999987533443 3344455555432 22222332 Q ss_pred CCcCCC Q lcl|Aclame:pro 474 GVIDET 479 (479) Q Consensus 474 ~~~det 479 (479) +..+|= T Consensus 518 ~e~~~f 523 (523) T protein:vir:68 518 QEQEDF 523 (523) T ss_pred hhhhcC Confidence 222233 No 255 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=75.93 E-value=0.14 Score=25.25 Aligned_cols=399 Identities=11% Similarity=0.081 Sum_probs=156.6 Q ss_pred CCCcccCc------------HHHH-------HHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccc Q lcl|Aclame:pro 1 MLNIYISE------------TDLI-------KVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYL 61 (479) Q Consensus 1 ~~~~~~~~------------~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~ 61 (479) +.-.-..+ .+.+ ..++.......+ ....+...+|+.+..+++-.. T Consensus 27 ~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~------~~~~eLI~~YR~ma~~pEvd~---------- 90 (524) T protein:vir:10 27 DLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGM------KTTRELIDTYRNLMNNYEVDN---------- 90 (524) T ss_pred CCccccCccCCCCceeeeecccccccccceeeeehhccccccc------chHHHHHHHHHHHhhccchhh---------- Confidence 11000000 0000 000000000000 001112233444433333221 Q ss_pred cccccccccccCcceeecchHHHHHHHH-HhhhhccCeeecCCchhHHH----HH----HHHH-hcCHHHHHHHHHHHHH Q lcl|Aclame:pro 62 LDGAKVDDFTKVNNKAINNYHKLLVDQK-VGYSVGNPIVFNADDDNLTK----LL----NDLL-GEEFDDTITELYLNAS 131 (479) Q Consensus 62 ~~~~~~~~~~~~~~ri~~n~~~~iv~~~-a~~l~g~~~~~~~~~~~~~~----~~----~~~~-~n~~~~~~~~~~~~~~ 131 (479) =...||+.. +.--..+|+.+..++.+..+ .+ +.+. -=+|+....+..|.+. T Consensus 91 -------------------Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WY 151 (524) T protein:vir:10 91 -------------------AVSEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFNDVLNHLSFQRKGSDHFRRWY 151 (524) T ss_pred -------------------HHHHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhe Confidence 111122211 11123345555544432221 12 1122 1378899999999999 Q ss_pred hCCeEEEEEEeCCC----CceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCc----eEEEEEEEeCCcEEEEEE Q lcl|Aclame:pro 132 NKGVEWLHPYINRK----GEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGN----KIKRVEYYTENDITYFIE 203 (479) Q Consensus 132 ~~G~~~~~v~~d~~----~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~y~~~~i~~~~~ 203 (479) +.|+.|.....|.+ |-..+..++|+.+-.+..- .....++. .+.-+-+|.++. ..|.. T Consensus 152 VDgRi~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i-------------~~~~~~~~~vi~~~~e~f~Y~~~~-~~y~~ 217 (524) T protein:vir:10 152 VDSRIFFHKIIDPKRPKEGIKELRRLDPRQVQYVREI-------------ITETEAGTKIVKGYKEYFIYDTAH-ESYAC 217 (524) T ss_pred eeeEEEEEEEeeCCCccccceeeeeeCCccceeeeee-------------ccCCCccchhhcchhhheeeccCc-ccccc Confidence 99999999888743 6667889999887543321 11111111 011112233321 11111 Q ss_pred cCCccccccccccccccccccccccccccccccccccce--EEecCC----CCCCchHHHHHHHHHHHH--HHHHHHHHH Q lcl|Aclame:pro 204 RGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF--IPFKNN----EKCVSDLTFYKSLIDIYD--NNISTLADN 275 (479) Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv--v~~~n~----~~g~s~~~~v~~lid~~~--~~~s~~~~~ 275 (479) .+..+. ++.--+||- |.|..+ ..|.-.+.-+...+..+| +++-|.+.. T Consensus 218 ~g~~~~------------------------~~~~ikI~~dAI~y~hSGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVI 273 (524) T protein:vir:10 218 DGRMYE------------------------AGTKIKIPKAAIVYAHSGLVDCCGKNIIGYLHRAVKPANQLKLLEDAVVI 273 (524) T ss_pred CccccC------------------------CCcceecchhheeeeeccceeCCCCceeccchhhhHHHHhhhHHHhhHHH Confidence 111000 000001111 111111 011112222333344444 456677777 Q ss_pred HHHhccceeeeecC--CccchhhH---H----HHhhc--------c--------cce----ec---CCCCcceeeecCC- Q lcl|Aclame:pro 276 LDEIQEVIYVLKEY--PGTSLQEF---I----DNIRY--------Y--------KSI----KV---DGGGGVDKLEINI- 322 (479) Q Consensus 276 ~~~~~~p~l~~~g~--~~~~~~~~---~----~~~~~--------~--------~~~----~~---~~~~~~~~~~~~~- 322 (479) -+..+.|-.-+.-. +..+.... . .+.+. | ..+ -+ +++.+.+.-+.+. T Consensus 274 YRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGg 353 (524) T protein:vir:10 274 YRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGA 353 (524) T ss_pred HhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeecccc Confidence 77787775533321 11121111 0 01110 0 000 01 1222333333332 Q ss_pred -CHHHHHHHHHHHHHHHHHHhCCCCCcc--cc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 323 -PVEAKKELLDRLEKNIIIFGQGVNPES--QN---TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS 396 (479) Q Consensus 323 -~~~~~~~~~~~l~~~i~~~s~~~~~~~--~~---~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 396 (479) +.. ..+-+.-+++-++.--.+|---. +. +..--+.+|--.+......+.+.+..|...+.++++.=+-+-++. T Consensus 354 qnlg-em~DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilKgii 432 (524) T protein:vir:10 354 DNTG-NMEDVRWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLKGII 432 (524) T ss_pred CCcC-hHHHHHHHHHHHHHHhCCchhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC Confidence 221 22233344444444445442111 11 110122333333444455677777777777777776433333333 Q ss_pred CCCccc--cceeeEEeCCCCCCCHHHHHH-------HHHHHh---c-cCChHHHHHhCCCCCC--HHHHHHHHHHHHHHH Q lcl|Aclame:pro 397 GNKSYD--YKTVQITFNHSMIINEAEKID-------MAAKST---G-IVSDETIVSNHPWVED--VNDELERLKKQEDTQ 461 (479) Q Consensus 397 ~~~~~~--~~~i~i~f~~~~p~d~~e~a~-------~~~k~~---g-~is~et~~~~l~~~~d--~~~El~~i~~E~~~~ 461 (479) ...+.+ ...+.+.|..--.-.+...++ ++..+. | .+|.+++.+.+=-.+| ..++.++|++|.. T Consensus 433 t~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k-- 510 (524) T protein:vir:10 433 TEDEWNDEINNIKIEFHRDSYFTELKEAEILERRINMLTMAEPFIGKYISHRTAMKDILQMTDEEIEQEAKQIEEESK-- 510 (524) T ss_pred CHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhh-- Confidence 322222 245777785444433443333 333333 3 4799999988533443 3344455555432 Q ss_pred HhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 462 KEYDDLIPNNQDGVIDET 479 (479) Q Consensus 462 ~~~~~~~~~~~~~~~det 479 (479) +....+.++..+|= T Consensus 511 ----~~~~~~~~~~~~~f 524 (524) T protein:vir:10 511 ----EARFQDPDQEQEDF 524 (524) T ss_pred ----cCCCCCCchhhhcC Confidence 22222222222223 No 256 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=75.86 E-value=0.14 Score=25.23 Aligned_cols=399 Identities=10% Similarity=0.078 Sum_probs=156.6 Q ss_pred CCCcccCc------------HHHH-------HHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccc Q lcl|Aclame:pro 1 MLNIYISE------------TDLI-------KVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYL 61 (479) Q Consensus 1 ~~~~~~~~------------~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~ 61 (479) +.-.-..| .+.+ ..++.......+ ....+...+|+.+..+++-.. T Consensus 27 ~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~------~~~~eLI~~YR~ma~~pEvd~---------- 90 (524) T protein:vir:72 27 DLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGM------KTTRELIDTYRNLMNNYEVDN---------- 90 (524) T ss_pred CCccccCccCCCCceeeeecccccccccceeeeehhccccccc------chHHHHHHHHHHHhhccchhh---------- Confidence 11000000 0000 000000000000 001112233444433333221 Q ss_pred cccccccccccCcceeecchHHHHHHHH-HhhhhccCeeecCCchhHHH----HH----HHHH-hcCHHHHHHHHHHHHH Q lcl|Aclame:pro 62 LDGAKVDDFTKVNNKAINNYHKLLVDQK-VGYSVGNPIVFNADDDNLTK----LL----NDLL-GEEFDDTITELYLNAS 131 (479) Q Consensus 62 ~~~~~~~~~~~~~~ri~~n~~~~iv~~~-a~~l~g~~~~~~~~~~~~~~----~~----~~~~-~n~~~~~~~~~~~~~~ 131 (479) =...||+.. +.--..+|+.+..++.+..+ .+ +.+. -=+|+....+..|.+. T Consensus 91 -------------------Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WY 151 (524) T protein:vir:72 91 -------------------AVSEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWY 151 (524) T ss_pred -------------------HHHHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhe Confidence 111122211 11123345555544432221 12 1122 1378899999999999 Q ss_pred hCCeEEEEEEeCCC----CceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCc----eEEEEEEEeCCcEEEEEE Q lcl|Aclame:pro 132 NKGVEWLHPYINRK----GEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGN----KIKRVEYYTENDITYFIE 203 (479) Q Consensus 132 ~~G~~~~~v~~d~~----~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~y~~~~i~~~~~ 203 (479) +.|+.|.....|.+ |-..+..++|+.+-.+..- .....++. .+.-+-+|.++. ..|.. T Consensus 152 VDgRi~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i-------------~~~~~~~~~vi~~~~e~f~Y~~~~-~~y~~ 217 (524) T protein:vir:72 152 VDSRIFFHKIIDPKRPKEGIKELRRLDPRQVQYVREI-------------ITETEAGTKIVKGYKEYFIYDTAH-ESYAC 217 (524) T ss_pred eeeEEEEEEEEeCCCccccceeeeeeCCccceeeeee-------------ccCCCccchhhcchhhheeeccCc-ccccc Confidence 99999999888643 6667889999887543321 11111111 011112233321 11111 Q ss_pred cCCccccccccccccccccccccccccccccccccccce--EEecCC----CCCCchHHHHHHHHHHHH--HHHHHHHHH Q lcl|Aclame:pro 204 RGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF--IPFKNN----EKCVSDLTFYKSLIDIYD--NNISTLADN 275 (479) Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv--v~~~n~----~~g~s~~~~v~~lid~~~--~~~s~~~~~ 275 (479) .+..+. ++.--+||- |.|..+ ..|.-.+.-+...+..+| +++-|.+.. T Consensus 218 ~g~~~~------------------------~~~~ikI~~dAI~y~hSGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVI 273 (524) T protein:vir:72 218 DGRMYE------------------------AGTKIKIPKAAVVYAHSGLVDCCGKNIIGYLHRAVKPANQLKLLEDAVVI 273 (524) T ss_pred CccccC------------------------CCcceecchhheeeeeccceeCCCCceeccchhhhHhHHhhhHHHhhHHH Confidence 111000 000001111 111111 011112222333344444 456677777 Q ss_pred HHHhccceeeeecC--CccchhhH---H----HHhhc--------c--------cce----ec---CCCCcceeeecCC- Q lcl|Aclame:pro 276 LDEIQEVIYVLKEY--PGTSLQEF---I----DNIRY--------Y--------KSI----KV---DGGGGVDKLEINI- 322 (479) Q Consensus 276 ~~~~~~p~l~~~g~--~~~~~~~~---~----~~~~~--------~--------~~~----~~---~~~~~~~~~~~~~- 322 (479) -+..+.|-.-+.-. +..+.... . .+.+. | ..+ -+ +++.+.+.-+.+. T Consensus 274 YRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGg 353 (524) T protein:vir:72 274 YRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGA 353 (524) T ss_pred HhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeecccc Confidence 77777775533321 11121111 0 01110 0 000 01 1222333333332 Q ss_pred -CHHHHHHHHHHHHHHHHHHhCCCCCcc--cc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 323 -PVEAKKELLDRLEKNIIIFGQGVNPES--QN---TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS 396 (479) Q Consensus 323 -~~~~~~~~~~~l~~~i~~~s~~~~~~~--~~---~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 396 (479) +.. ..+-+.-+++-++.--.+|---. +. +..--+.+|--.+......+.+.+..|...+.++++.=+-+-++. T Consensus 354 qnlg-em~DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilKgii 432 (524) T protein:vir:72 354 DNTG-NMEDIRWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLKGII 432 (524) T ss_pred CCcC-hHHHHHHHHHHHHHHhCCchhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC Confidence 221 22233344444444445442111 11 110122333333444455677777777777777776433333333 Q ss_pred CCCccc--cceeeEEeCCCCCCCHHHHHH-------HHHHHh---c-cCChHHHHHhCCCCCC--HHHHHHHHHHHHHHH Q lcl|Aclame:pro 397 GNKSYD--YKTVQITFNHSMIINEAEKID-------MAAKST---G-IVSDETIVSNHPWVED--VNDELERLKKQEDTQ 461 (479) Q Consensus 397 ~~~~~~--~~~i~i~f~~~~p~d~~e~a~-------~~~k~~---g-~is~et~~~~l~~~~d--~~~El~~i~~E~~~~ 461 (479) ...+.+ ...+.+.|..--.-.+...++ ++..+. | .+|.+++.+.+=-.+| ..++.++|++|.. T Consensus 433 t~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k-- 510 (524) T protein:vir:72 433 TEDEWNDEINNIKIEFHRDSYFAELKEAEILERRINMLTMAEPFIGKYISHRTAMKDILQMTDEEIEQEAKQIEEESK-- 510 (524) T ss_pred CHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhh-- Confidence 322222 245777785444433443333 333333 3 4799999988533443 3344455555432 Q ss_pred HhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 462 KEYDDLIPNNQDGVIDET 479 (479) Q Consensus 462 ~~~~~~~~~~~~~~~det 479 (479) +....+.++..+|= T Consensus 511 ----~~~~~~~~~~~~~f 524 (524) T protein:vir:72 511 ----EARFQDPDQEQEDF 524 (524) T ss_pred ----cCCCCCCchhhhcC Confidence 22222222222222 No 257 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=74.07 E-value=0.16 Score=24.91 Aligned_cols=302 Identities=10% Similarity=0.062 Sum_probs=97.7 Q ss_pred HHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHH-----------HHHhhhhccCeee Q lcl|Aclame:pro 32 ILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVD-----------QKVGYSVGNPIVF 100 (479) Q Consensus 32 ~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~-----------~~a~~l~g~~~~~ 100 (479) |.+++. + -...+..........-..+..++. ...+-.+.+.-..-+ .+|..+-..+..- T Consensus 1 m~~~~~-~-------~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~ 70 (340) T protein:vir:98 1 MSKRKP-R-------KAVAMTASAPQKMEAFTFGEPVPV--LDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHS 70 (340) T ss_pred CCCCCC-C-------ccccccccCccceeEEEcCCceee--cCcchhhhhhhhhhcCceecCCCCHHHHHHHHHhccccc Confidence 111000 0 000000000000000000000000 000000111100000 0000000011000 Q ss_pred cCCchhHHHHHHHHHhcC-H-HHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEE Q lcl|Aclame:pro 101 NADDDNLTKLLNDLLGEE-F-DDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFY 177 (479) Q Consensus 101 ~~~~~~~~~~~~~~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~ 177 (479) ++=--..+.+...+.-|. + ...+..++.+.+.+|.+|+.+..+..|++ .+..++|..+....+. . ++| T Consensus 71 s~i~~k~n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~~~----~-----~~~ 141 (340) T protein:vir:98 71 SPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S-----VFW 141 (340) T ss_pred hhhhhhhhHHhhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceEEEcccC----c-----EEE Confidence 000000111111122232 2 23446677888999999999998888875 4555666555432211 1 111 Q ss_pred eeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHH Q lcl|Aclame:pro 178 YIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTF 257 (479) Q Consensus 178 ~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~ 257 (479) .+. ..+.. ..|.++.+.+++. +++. ....|.|.+.. T Consensus 142 ~~~-~~~~~----~~~~~~eViHir~------------------------------~~~~---------~~~~Gls~~~~ 177 (340) T protein:vir:98 142 FVE-NFTQP----HEFAPDTVFHLLE------------------------------PDIN---------QEIYGLPEYLS 177 (340) T ss_pred EEe-cCCeE----EEEccccEEEEcC------------------------------CCCC---------CCcccccHHHH Confidence 111 11111 1122333322210 0000 11346677665 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhccceee--eecCCccc--hhhHHHHhhc-------ccceecCC---CCcceeeec-- Q lcl|Aclame:pro 258 YKSLIDIYDNNISTL-ADNLDEIQEVIYV--LKEYPGTS--LQEFIDNIRY-------YKSIKVDG---GGGVDKLEI-- 320 (479) Q Consensus 258 v~~lid~~~~~~s~~-~~~~~~~~~p~l~--~~g~~~~~--~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~-- 320 (479) ...-+..- .....+ ..-+.-.+.|-.+ .++..... .+.....++. +..+.+.. .+++++... T Consensus 178 a~~si~l~-~aa~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~~g~~~~pls~ 256 (340) T protein:vir:98 178 ALNSAWLN-ESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSE 256 (340) T ss_pred HHHHHHHH-HHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEcCC Confidence 54444322 222222 2223334445444 34422111 1111222211 12222322 233444433 Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCccccc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 NIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-------GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYL 393 (479) Q Consensus 321 ~~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-------g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~ 393 (479) ......+.+..+..++.|...-.+|+.-.+.. +++...+..+... .|.-+++.+.++- T Consensus 257 ~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~---------------~l~Pl~~~iee~n 321 (340) T protein:vir:98 257 VATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRN---------------ELSPLQDRFREVN 321 (340) T ss_pred ChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHH---------------HHHHHHHHHHHHH Confidence 33445677888888888988888886544322 2221112111111 1111111111110 Q ss_pred HhcCCCccccceeeEEeCCCCCCCHH Q lcl|Aclame:pro 394 KISGNKSYDYKTVQITFNHSMIINEA 419 (479) Q Consensus 394 ~~~~~~~~~~~~i~i~f~~~~p~d~~ 419 (479) ...+.. -+.|++....+.. T Consensus 322 ~~L~~e-------~~rF~~~~l~~~d 340 (340) T protein:vir:98 322 DWLGME-------VIRFKEYTLDNPE 340 (340) T ss_pred hccccc-------ccccCccccccCC Confidence 100110 1334332222111 No 258 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=69.82 E-value=0.22 Score=24.22 Aligned_cols=299 Identities=11% Similarity=0.034 Sum_probs=95.2 Q ss_pred HHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccC-eeecCCchhHHHH Q lcl|Aclame:pro 32 ILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNP-IVFNADDDNLTKL 110 (479) Q Consensus 32 ~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~-~~~~~~~~~~~~~ 110 (479) +.+++..+- ..+.+ .....+. .+..++. -+.+-.+.+...+.+..-.| + +| +... ...++ T Consensus 1 m~~~~~~~~------~~~~~--~~~~~~~---~~~p~~~--~~~~~~~~~~~~~~~~~~~~-~-~pP~~~~----~La~l 61 (337) T protein:vir:78 1 MTKRQQQPA------QAAAS--SPRPSVV---FSMPEAI--DPTAWMTDYTGVFYNPYGEY-Y-QPPIDRK----GLAKV 61 (337) T ss_pred CCCcccCcc------ccccc--CceeEEE---ecCcccc--cCcchhHhhhhhhhccCcce-e-cCCCCHH----HHHHH Confidence 111000000 00000 0000000 0000000 00000011111111100000 0 11 1110 11111 Q ss_pred HH-------HH--Hhc----CH---HHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEE Q lcl|Aclame:pro 111 LN-------DL--LGE----EF---DDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAF 173 (479) Q Consensus 111 ~~-------~~--~~n----~~---~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~ 173 (479) ++ .+ ..| .| ...+..++.+.+.+|.+|+.+..+..|++ .+..++|..+...-|. .. T Consensus 62 ~~~~~~h~~~L~~k~N~~~~~f~~~~~~~~~~~~d~ll~GNay~~~~rn~~G~~~~L~pl~~~~v~~~~d~----~~--- 134 (337) T protein:vir:78 62 ARANAHHGAILMARRNMVAGRFTNQRATITAFVHNYLQFGDGGLLKLRNSFGQVVGLHPLSSVYLRRREDG----CF--- 134 (337) T ss_pred hhcchhhhhHHHhhhccccccCcCcHHHHHHHHHHHHhhCCeEEEEEECCCCcEEEEEEeCCceeEeeeCC----eE--- Confidence 11 11 112 12 13456677888899999999999888875 4566666554332111 00 Q ss_pred EEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCc Q lcl|Aclame:pro 174 IRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVS 253 (479) Q Consensus 174 i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s 253 (479) +|... .+.. ..|.++.+.+++. +++. ....|.| T Consensus 135 --~~~~~--~~~~----~~~~~~eIiHik~------------------------------~~~~---------~~~~Gls 167 (337) T protein:vir:78 135 --VYLQQ--GKPN----LIYRPDDVIWLAQ------------------------------YDPE---------QQVYGMP 167 (337) T ss_pred --EEEEc--CCce----EEECCccEEEECC------------------------------CCCC---------CCccccc Confidence 11100 0110 1122222222110 0000 1124667 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccceeee--ecCCccc--hhhHHHHhhc-------ccceecCC---CCcceeee Q lcl|Aclame:pro 254 DLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL--KEYPGTS--LQEFIDNIRY-------YKSIKVDG---GGGVDKLE 319 (479) Q Consensus 254 ~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~--~g~~~~~--~~~~~~~~~~-------~~~~~~~~---~~~~~~~~ 319 (479) .+.....-+..-.....-..+-+...+.|-.++ ++..... .+.....+.. +..+.+.. +.++++.. T Consensus 168 ~~~~a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~~~l~~e~~~~lk~~~~~~~G~~n~~~~~v~~~~g~~~Gi~~~p 247 (337) T protein:vir:78 168 DYLGGLQSALLNQDATLFRRRYFLNGAHMGFIFYATDPNMDDDTEEEMKEMIANSKGVGNFRSMFVNIPDGKPDGIKLIP 247 (337) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEcCCCCCCHHHHHHHHHHHHHhcCcccccceEEEcCCCCccceeEEE Confidence 665544444332222222222334445555554 3321111 1111112211 11222222 23455554 Q ss_pred cC--CCHHHHHHHHHHHHHHHHHHhCCCCCccccc-cc-cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 320 IN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GD-KS--GVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYL 393 (479) Q Consensus 320 ~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-g~-~S--g~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~ 393 (479) .. .....+.+..+..++.|...-..|+.-.+.. .+ .+ |.+-+... ......|.-+++.+...+ T Consensus 248 is~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n~e~~~~-----------~f~~~~L~P~~~~ie~~~ 316 (337) T protein:vir:78 248 VGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGDPEKYDA-----------TYARNEVLPLCELVQDAI 316 (337) T ss_pred cCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCccccHHHHHH-----------HHHHHHHHHHHHHHHHHH Confidence 33 3345577777778888888878886543321 11 11 11111100 111111211122222211 Q ss_pred HhcCCCccccceeeEEeCCCCCCCH Q lcl|Aclame:pro 394 KISGNKSYDYKTVQITFNHSMIINE 418 (479) Q Consensus 394 ~~~~~~~~~~~~i~i~f~~~~p~d~ 418 (479) ........ . .+.|..+.-.-. T Consensus 317 n~~ll~~~--~--~~~f~~~~~~~~ 337 (337) T protein:vir:78 317 NSAGLPRA--L--WVTFRETIGAAV 337 (337) T ss_pred hhhcCChh--h--ceeccccccccC Confidence 11110000 0 112222211111 No 259 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=62.00 E-value=0.34 Score=23.13 Aligned_cols=400 Identities=11% Similarity=0.084 Sum_probs=154.8 Q ss_pred CCCc-ccCc-HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceee Q lcl|Aclame:pro 1 MLNI-YISE-TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) Q Consensus 1 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 78 (479) +.+. |.-- ...+..+..-.++.+|+ .+|+.+-.+++-.. T Consensus 45 ~~~~~~~g~~~~~~d~~~~~~~~~~LI------------~~YR~ma~~pEvd~--------------------------- 85 (516) T protein:vir:10 45 EGESSYNALMQQFFGIDNNISGTKDLI------------NTYRQLTNNPEVER--------------------------- 85 (516) T ss_pred cccccccceeeeeecccCccccHHHHH------------HHHHHhhhccchhH--------------------------- Confidence 1111 0000 00011111222233222 23444444433221 Q ss_pred cchHHHHHHHH-HhhhhccCeeecCCchhHHHH----H----HHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeC--CCC Q lcl|Aclame:pro 79 NNYHKLLVDQK-VGYSVGNPIVFNADDDNLTKL----L----NDLL-GEEFDDTITELYLNASNKGVEWLHPYIN--RKG 146 (479) Q Consensus 79 ~n~~~~iv~~~-a~~l~g~~~~~~~~~~~~~~~----~----~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d--~~~ 146 (479) =...||+.. +.--..+|+.+..++.++.+. + +.+. -=+|+....+..|.+.+.|+.|.....| ++| T Consensus 86 --Av~eIvneaiv~d~~~~pV~l~l~~~e~s~sik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~~k~G 163 (516) T protein:vir:10 86 --AVANIVNEAVVYEKGHKVVSLDLDDTEFSSSIKDKILEEFDEICRLLDASRKLDTLFRRWYIDSRIFFHKIMPNPKEG 163 (516) T ss_pred --HHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHHhhhhcceEEEEEEecCcccc Confidence 011122211 111233455555444322222 1 1111 1378889999999999999998886665 246 Q ss_pred ceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCc----eEEEEEEEeCCcEEEEEEcCCcccccccccccccccc Q lcl|Aclame:pro 147 EFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGN----KIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTD 222 (479) Q Consensus 147 ~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 222 (479) -..+..++|+.+..+..- ...+.++. .+..+-+|+.+... |...+....... . T Consensus 164 I~elr~lDPr~i~~vR~i-------------~~~~~~~~~v~~~~~e~~~Y~~~~~~-~~~~g~~~~~~~---------~ 220 (516) T protein:vir:10 164 IVELRRLDPRHVEYYREI-------------VTSDVGGTSVVKGYREFFVYTTGNEG-YAYNGRLFEPNT---------R 220 (516) T ss_pred eeeeeeeCCcceeeEEee-------------ecccCcchhhhhceeeeeeeecCccc-eeccccccCCCC---------c Confidence 667899999988764321 11111111 11122333333222 122211110000 0 Q ss_pred ccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC--CccchhhH--- Q lcl|Aclame:pro 223 IQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY--PGTSLQEF--- 297 (479) Q Consensus 223 ~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~--~~~~~~~~--- 297 (479) +-.+...+. ..| -|.+|. +...-.|-+...+-....| +++-|.+..-+..+.|-.-+.-. +..+.... T Consensus 221 ikI~~daI~-y~h-SGl~d~----~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqY 293 (516) T protein:vir:10 221 IKIPRSAIV-YAH-SGLQDC----SDRGIVGYLHNAVKPANQL-KLLEDALVIYRITRAPERRVFYIDVGNMPNRKATEY 293 (516) T ss_pred eecchhhee-eee-cCcccC----CCCceeceehhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHHH Confidence 000000000 000 000000 0011123333333333333 45667777777787775533321 11221111 Q ss_pred HH----Hhhc----------------ccce----ec---CCCCcceeeecCCCH-HHHHHHHHHHHHHHHHHhCCCCC-- Q lcl|Aclame:pro 298 ID----NIRY----------------YKSI----KV---DGGGGVDKLEINIPV-EAKKELLDRLEKNIIIFGQGVNP-- 347 (479) Q Consensus 298 ~~----~~~~----------------~~~~----~~---~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~s~~~~~-- 347 (479) .. +.+. ...+ -+ +++.+.+.-+.+... -+-.+-+.-+++-++.--.+|-- T Consensus 294 l~~iM~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~SRl 373 (516) T protein:vir:10 294 VNGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVTSLPGAQTMGEMDDVRWFNKKLYEALRIPLSRM 373 (516) T ss_pred HHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHHHHHHHHHHHHHHhCCCcccc Confidence 00 1010 0000 01 122233333333221 11223344444445554455532 Q ss_pred ccccccc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cceeeEEeCCCCCCCHHHHH Q lcl|Aclame:pro 348 ESQNTGD---KSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYD--YKTVQITFNHSMIINEAEKI 422 (479) Q Consensus 348 ~~~~~g~---~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~--~~~i~i~f~~~~p~d~~e~a 422 (479) ..++.++ --+.+|--.+......+.+.+..|...+.++++.=+-+-++....+.+ ...+.+.|..--.-.+...+ T Consensus 374 ~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lF~~~L~~qLilKgIit~eeW~~i~~~I~~~f~~Dn~f~ElKe~ 453 (516) T protein:vir:10 374 PRDDGGMVIGGQDMAITRDELDFRKFIVQLQHNFEEIFLDPLKTNLIYKKIILESEWEEQINNIKVNFHQDSYYTELKDI 453 (516) T ss_pred cCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhhcceEEeeecchHHHHHHH Confidence 1111111 122333223333444566666666666666655322222232222222 23567777544333343333 Q ss_pred H-------HHHHH---hc-cCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 423 D-------MAAKS---TG-IVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 423 ~-------~~~k~---~g-~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) + +++.+ +| .+|.+++.+.+=-.+| ..+|-++|++|..+ ....+. .+++. T Consensus 454 Eil~~Rl~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~~~------~~~~~p--~~e~~ 515 (516) T protein:vir:10 454 ETLRQRVDALSQIEPYVGKYVSHDYVMKNILQMTDEQIAQEEKQIEKEANV------KRFQNP--ENEDD 515 (516) T ss_pred HHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhHHHHHHHHHHHhhhC------CCCCCC--Ccccc Confidence 3 33333 24 6999999988533443 33445555555332 111111 11122 No 260 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=61.09 E-value=0.36 Score=23.02 Aligned_cols=304 Identities=11% Similarity=0.074 Sum_probs=102.4 Q ss_pred HHHhhHHHHHHHHHHhccCCcccccccccccc--cccccccccCcceeecchHHHHHHHHHhhhhcc----CeeecC--- Q lcl|Aclame:pro 32 ILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLD--GAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGN----PIVFNA--- 102 (479) Q Consensus 32 ~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~--~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~----~~~~~~--- 102 (479) +.+. -++.++.-...+...... ........-.+-..+++- +.+.+-.--+..|+ |+...+ T Consensus 1 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~-~~~~~~~~~~~~~~~~~pp~~~~~la~ 69 (351) T protein:vir:79 1 MSKR----------RSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNR-AEILDYVECWSNGEWFEPPVSFAGLAK 69 (351) T ss_pred CCCC----------CCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCc-chhhhhhhhhhcCceecCCCCHHHHHH Confidence 1111 111111000000000000 000000000000000000 00111111111122 111110 Q ss_pred ---Cch--------hHHHHHHHHHhcC-H-HHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCC Q lcl|Aclame:pro 103 ---DDD--------NLTKLLNDLLGEE-F-DDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQR 168 (479) Q Consensus 103 ---~~~--------~~~~~~~~~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~ 168 (479) .+. ..+.+...+.-|. + ...+.+++.+.+.+|.+|+.+..+..|.+ .+..++|..+.+..+... T Consensus 70 ~~~~~~~h~~~l~~k~n~l~~~~~Pnp~~t~~~f~~~v~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~~-- 147 (351) T protein:vir:79 70 SFRASTHHSSALFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSG-- 147 (351) T ss_pred HHhhhHhhhhhhhhhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceeeeecCCe-- Confidence 000 0111111122232 2 12356778889999999999999888875 577777777654333210 Q ss_pred ceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCC Q lcl|Aclame:pro 169 ELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNN 248 (479) Q Consensus 169 ~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~ 248 (479) ++.. ...+.. ..|.++.|.+++. +++ ... T Consensus 148 -------~~~~-~~~g~~----~~~~~~eIihir~------------------------------~~~---------~~~ 176 (351) T protein:vir:79 148 -------FVYV-NGWQER----HEFEPDSVFQLVR------------------------------PDI---------NQE 176 (351) T ss_pred -------EEEE-ecCceE----EEEcCccEEEeCC------------------------------CCC---------CCC Confidence 1111 111111 1122233222210 000 012 Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHH-HHHHHhccceee--eecCCccc--hhhHHHHhhc-------ccceecCC---CC Q lcl|Aclame:pro 249 EKCVSDLTFYKSLIDIYDNNISTLA-DNLDEIQEVIYV--LKEYPGTS--LQEFIDNIRY-------YKSIKVDG---GG 313 (479) Q Consensus 249 ~~g~s~~~~v~~lid~~~~~~s~~~-~~~~~~~~p~l~--~~g~~~~~--~~~~~~~~~~-------~~~~~~~~---~~ 313 (479) ..|.|.+......+..- .....+. +-+.-.+.|-.+ .++..... .+.....++. +..+.+.. .. T Consensus 177 ~yGl~~~~~a~~si~l~-~~a~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~~G~~N~~~~~v~~~~g~~~ 255 (351) T protein:vir:79 177 VYGLPEYLSSLHSAWLN-ESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKD 255 (351) T ss_pred cccccHHHHHHHHHHHH-HHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCcc Confidence 34777666544444322 2222222 223334445444 34422111 1111111211 12222222 23 Q ss_pred cceeeecC--CCHHHHHHHHHHHHHHHHHHhCCCCCccccc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 GVDKLEIN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNT-------GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRE 384 (479) Q Consensus 314 ~~~~~~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-------g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~ 384 (479) ++++.... .....+.+..+..++.|...-.+|+.-.+.. +++......+.... |.- T Consensus 256 gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~---------------l~P 320 (351) T protein:vir:79 256 GIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNE---------------IRP 320 (351) T ss_pred ceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHH---------------HHH Confidence 34554433 3345577788888888988888886544322 12111121111111 111 Q ss_pred HHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 385 LLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS 428 (479) Q Consensus 385 ~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~ 428 (479) +++.+.++-...+. + -+.|++..- +....++ T Consensus 321 l~~~ie~ln~~lg~-~------~~~F~~~~l------lr~d~~a 351 (351) T protein:vir:79 321 LQARFAELNDWLGD-E------VVTFDDYEI------PPAPVAA 351 (351) T ss_pred HHHHHHHHHhhcCc-c------eeeeChhhh------ccccccC Confidence 11111111111111 1 145544322 1111111 No 261 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=60.87 E-value=0.36 Score=22.99 Aligned_cols=344 Identities=10% Similarity=-0.001 Sum_probs=133.2 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQ 88 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~ 88 (479) |..+...+.+.... ....++-.+. ... ...-+........|+. T Consensus 1 Mg~f~~l~~~~~~~------------------~~~~~~~~~~------------------~~~-~~~~l~~~~v~~~i~~ 43 (376) T protein:vir:78 1 MGFFSELFKRNKEI------------------EWMWDLDFLE------------------DKT-TKVYLKKMALNTCVKH 43 (376) T ss_pred CchhhhhhccCCcc------------------ccccchhhcc------------------ccc-hhhhhhhHHHHHHHHH Confidence 22222111111000 0000000000 000 0000123345566777 Q ss_pred HHhhhhccCeeecCCchhH-HHHHHHHHh--c---CHHHHHHHHHHHHHhCCeEEEEEEeCCCCceE-EEEEccceeEEE Q lcl|Aclame:pro 89 KVGYSVGNPIVFNADDDNL-TKLLNDLLG--E---EFDDTITELYLNASNKGVEWLHPYINRKGEFK-YVIIPAEEAIPI 161 (479) Q Consensus 89 ~a~~l~g~~~~~~~~~~~~-~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~-i~~~~p~~~~~~ 161 (479) +++-+..-|+.+-..+... ..+...+.. | ....+...+....+..|.+|+++..+.+|.+. ...+.|..+.+ T Consensus 44 Ia~~ia~~p~~~~~~~~~~~~~l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~~~- 122 (376) T protein:vir:78 44 IARTIAKSDFRLKNGETSVRDKLYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAFFP- 122 (376) T ss_pred HHHhhcccceeeccccccccchHHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccceee- Confidence 7777777787654332222 223333321 3 23455567788888899999988877665431 11122211111 Q ss_pred EcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 162 WDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVP 241 (479) Q Consensus 162 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vP 241 (479) ..++.+... .+.....+..+.+.+++. + T Consensus 123 ------------~~~~~~~~~---~~~~~~~~~~~evih~~~----------------------------------~--- 150 (376) T protein:vir:78 123 ------------DVFEGVTVK---DYRYNRNFSMDDVIFLEY----------------------------------G--- 150 (376) T ss_pred ------------eeeeeeeee---cceeeeeeccccEEEecc----------------------------------C--- Confidence 000110000 011111222333333211 0 Q ss_pred eEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--hccceeeeecCCccchhhHH-------HHh-----h-cccc Q lcl|Aclame:pro 242 FIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDE--IQEVIYVLKEYPGTSLQEFI-------DNI-----R-YYKS 306 (479) Q Consensus 242 vv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~--~~~p~l~~~g~~~~~~~~~~-------~~~-----~-~~~~ 306 (479) ...+.+-. .++...+............+ ...+.+++.. .+...++.. ... . ...+ T Consensus 151 ------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~g~~~~~~~v 220 (376) T protein:vir:78 151 ------NERLSAFT---DGMFEDYGELFGKMIRAQMRNFQIRGAVNFKM-AGVADKDKQTKLQEYIDKVYASFNNNEIAI 220 (376) T ss_pred ------CCCchhhh---hHHHHHHHHHHHHHHHHHHhcCCCceeEEEcc-CCCCCHHHHHHHHHHHHHHhccccccCcce Confidence 11111111 12233333333333333322 2334444432 111111111 111 0 1123 Q ss_pred eecCCCCcceeeecCC-----CHHHHHHHHHHHHHHHHHHhCCCCCcccc-cccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 307 IKVDGGGGVDKLEINI-----PVEAKKELLDRLEKNIIIFGQGVNPESQN-TGDKSGVALKFLYSLLDLKCSKTEKKFKK 380 (479) Q Consensus 307 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~i~~~s~~~~~~~~~-~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~ 380 (479) +.++++.+.+.+.... ....+.+..+...+.|+..-++|+.-.++ .++.+.... ..+.. T Consensus 221 ~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~~~~s~~e~~~~---------------~f~~~ 285 (376) T protein:vir:78 221 VPQLEGFNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLHGDMADLSNNMK---------------AYMEY 285 (376) T ss_pred EEcCCCceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCHHHHHH---------------HHHHH Confidence 3455555555554322 12356667777777888777777654432 122221111 12222 Q ss_pred HHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHHHHHHHHH Q lcl|Aclame:pro 381 AIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVNDELERLKK 456 (479) Q Consensus 381 ~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~El~~i~~ 456 (479) .|.-.++.|...+...--.. ....+...+...+-.|..+.++++.++ .|+++.-.++++++.-. +.. .++.-- T Consensus 286 ~l~P~~~~ie~~l~~kll~~-~~~~~~~~~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~lg~~p~~~g~--~d~~~~ 362 (376) T protein:vir:78 286 CIDPLTKKLEDELNAKLFTF-SEFLAGEHIKIIHKKDIIENAEAVDKLVASGSFNRNEVRELLGAERVDNPE--LDKYLI 362 (376) T ss_pred HHHHHHHHHHHHHHhhhCCc-ccceecccchhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC--Cceeee Confidence 23333333322222111001 111223333445566888899998886 57899999988875422 211 000000 Q ss_pred HHHHHHhhhhccCCCCCC Q lcl|Aclame:pro 457 QEDTQKEYDDLIPNNQDG 474 (479) Q Consensus 457 E~~~~~~~~~~~~~~~~~ 474 (479) .......-...++| T Consensus 363 ----~~n~~~~~~~~e~g 376 (376) T protein:vir:78 363 ----TKNYQSADEGGEDG 376 (376) T ss_pred ----ccCceehhccccCC Confidence 00000001112222 No 262 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=59.98 E-value=0.38 Score=22.88 Aligned_cols=391 Identities=9% Similarity=0.098 Sum_probs=160.0 Q ss_pred CCCcccCcHHHHHHHHhccC-hHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeec Q lcl|Aclame:pro 1 MLNIYISETDLIKVQLKKES-TINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAIN 79 (479) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~ 79 (479) |-+.+. ..-.+.+-..... ..+..++ ..+|+.+..+++-.. T Consensus 47 ~~~~~~-~~~~~~~~~~~~~~~~n~~eL---------I~~YR~ma~~pEvd~---------------------------- 88 (521) T protein:vir:10 47 IDTTAP-KTAIVQSVLGYAPKIQNTKDL---------INQYRSLSKYHEVDN---------------------------- 88 (521) T ss_pred CCcccc-ccchhhhhhccccccchHHHH---------HHHHHHHhhccchhh---------------------------- Confidence 111110 1111111111100 0011111 233444433333211 Q ss_pred chHHHHHHHHH-hhhhccCeeecCCchhHHH----HH----HHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCC----C Q lcl|Aclame:pro 80 NYHKLLVDQKV-GYSVGNPIVFNADDDNLTK----LL----NDLL-GEEFDDTITELYLNASNKGVEWLHPYINR----K 145 (479) Q Consensus 80 n~~~~iv~~~a-~~l~g~~~~~~~~~~~~~~----~~----~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~----~ 145 (479) =...||+..+ .--...|+.+..++.+..+ .+ +.+. -=+|+....+..|.+.+.|+.|...-+|. + T Consensus 89 -Av~eIvneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~~~pk~ 167 (521) T protein:vir:10 89 -AIDEIINDAIVQEDNRDTVYLDLDKTDWNESVKEMVREEFRTILKLLKFEREGKRHFRRWYVDSRIYFHKMIDPARPKD 167 (521) T ss_pred -HHHhhhcceEEecCCCceEEEEecCcccchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeeEEEEEEeeCCCccc Confidence 1112222221 1123445555544432222 22 1122 13788899999999999999999887653 3 Q ss_pred CceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCc----eEEEEEEEeCCcEEEEEEcCCccccccccccccccc Q lcl|Aclame:pro 146 GEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGN----KIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMT 221 (479) Q Consensus 146 ~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 221 (479) |-..+..++|+.+-.+..-.. .+.++. .+.-+-+|.+....+|-..+. T Consensus 168 GI~Elr~lDPr~i~~vr~i~k-------------~~~~~~~v~~~~~e~f~Y~~~~~~~~~~~g~--------------- 219 (521) T protein:vir:10 168 GIKELRLLDPRNVEYYRVNLK-------------SNENGNDVYKGVKEFFTYGATEDNRYNISGN--------------- 219 (521) T ss_pred cceeeeeeCCcceeeeeeecC-------------CCCCcchhhccceeeeeeccCCCceecCCCC--------------- Confidence 556788999998754432211 111111 111122232222222211110 Q ss_pred cccccccccccccccccccce--EEec-------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC--C Q lcl|Aclame:pro 222 DIQEGHFRINNKEQGWGKVPF--IPFK-------NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY--P 290 (479) Q Consensus 222 ~~~~~~~~~~~~~~~~g~vPv--v~~~-------n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~--~ 290 (479) +...-+||. |.|. |.....|-+...+-....| +++-|.+..-+..+.|-.-+.-. + T Consensus 220 ------------~~~~vkI~~daI~y~hSGL~d~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvG 286 (521) T protein:vir:10 220 ------------SNNLVQIPIDAIVYSHSGKVDIDGKTIVGYLHNVIKPANQL-KMLEDAMVIYRITRAPERRVFYIDVG 286 (521) T ss_pred ------------CCcceeechhheeeecccceeCCCCceeccchhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecC Confidence 000001111 1111 2233345555544444444 45677777778888776543321 1 Q ss_pred ccchhhH---HH----Hhhc--------c--------cce----ec---CCCCcceeeecCCCH-HHHHHHHHHHHHHHH Q lcl|Aclame:pro 291 GTSLQEF---ID----NIRY--------Y--------KSI----KV---DGGGGVDKLEINIPV-EAKKELLDRLEKNII 339 (479) Q Consensus 291 ~~~~~~~---~~----~~~~--------~--------~~~----~~---~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~ 339 (479) ..+.... .. +.+. + ..+ -+ +++.+.+.-+.+... -+..+-+.-+++-++ T Consensus 287 nlpk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEI~TLpggqnlgem~DV~YF~kkLy 366 (521) T protein:vir:10 287 TMPNKKATQHLNNVMQGLKNRVVYDSSTGKVKNSSNNLAMTEDYWLMRRDGKATTEVSTLPGAQSMGEMDDVRWFNRKLY 366 (521) T ss_pred CCCchhHHHHHHHHHHhcCceEEEeccCceeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHH Confidence 1121111 00 0000 0 000 01 122233333333221 112223333444444 Q ss_pred HHhCCCC--Cccc----ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc--ceeeEEeC Q lcl|Aclame:pro 340 IFGQGVN--PESQ----NTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDY--KTVQITFN 411 (479) Q Consensus 340 ~~s~~~~--~~~~----~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~--~~i~i~f~ 411 (479) .--.+|- +..+ .+|. | ..|--.+......+.+.+..|...+.++++.=+-+-++....+.+. ..+.+.|. T Consensus 367 ~aLnVP~sRl~~e~~~f~~Gr-~-~EItRDEikF~KFI~rLR~rFs~~f~~~L~~qLilKgiit~eew~~i~~~I~~~f~ 444 (521) T protein:vir:10 367 ESMKIPLSRLPQEGAGVTFGA-G-NDITRDELQFTKYIRGLQQQFEPIFLNPLRTNLMLKGKMSVSEWEEQAENIKVVFS 444 (521) T ss_pred HHhCCCccccCCCCCceeccc-c-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEee Confidence 4444442 1111 1232 1 1233333444555777777777777777764333333333222222 45777775 Q ss_pred CCCCCCHHHHH-------HHHHHHhc------cCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCCc Q lcl|Aclame:pro 412 HSMIINEAEKI-------DMAAKSTG------IVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVI 476 (479) Q Consensus 412 ~~~p~d~~e~a-------~~~~k~~g------~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~~ 476 (479) .--.-.+...+ ++++.+.+ .+|.+++.+.+=-.+| ..++-++|++|.. +....+.+... T Consensus 445 ~Dn~f~ElKe~eil~~R~~~l~~~dp~~yvGky~s~dyi~k~ILr~tDeeik~~~k~I~~E~~------~~~~~~p~~e~ 518 (521) T protein:vir:10 445 KDSYYEEIKDVEILERRVNLVQTLASAEVTGKYLSHEYVMKNILRMSDEDIKTEREKIDGELK------DSVYKNPEDPM 518 (521) T ss_pred ecchHHHHHHHHHHHHHHHHHHhhcCccccccccchHHHHHHHhcCCHhHHHHHHHHHHHhhh------CCCCCCCcchh Confidence 44333333333 34444433 6899999988533443 3344555555533 22222222222 Q ss_pred CCC Q lcl|Aclame:pro 477 DET 479 (479) Q Consensus 477 det 479 (479) +|= T Consensus 519 ~df 521 (521) T protein:vir:10 519 EEF 521 (521) T ss_pred hcC Confidence 222 No 263 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=57.44 E-value=0.43 Score=22.57 Aligned_cols=315 Identities=10% Similarity=0.082 Sum_probs=105.4 Q ss_pred HHHhhHHHHHHHHH----HhccCCcccccccccccccccccc----cccCcce-eecch--HH------HHHHHHHhhhh Q lcl|Aclame:pro 32 ILKHRPEKYKQGEE----YYYGNTDVNNKRRYYLLDGAKVDD----FTKVNNK-AINNY--HK------LLVDQKVGYSV 94 (479) Q Consensus 32 ~~~~~~~~~~~~~~----yy~g~~~~~~~~~~~~~~~~~~~~----~~~~~~r-i~~n~--~~------~iv~~~a~~l~ 94 (479) +-..+.++..+..+ +-.|--+- .+.+..........+ ......+ .++.| +- .+.+-.--+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~ 79 (376) T protein:vir:10 1 MPARDRPRAARRRRHSFIFIHGVLRM-SKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSN 79 (376) T ss_pred CCCCccchhhhhhcccchhhcccccc-hhccCCCcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhhc Confidence 11111111111000 00000000 000000000000000 0000000 00000 00 01111111111 Q ss_pred cc----CeeecC------Cchh----HHHHHH----HHHhcC-H-HHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEE Q lcl|Aclame:pro 95 GN----PIVFNA------DDDN----LTKLLN----DLLGEE-F-DDTITELYLNASNKGVEWLHPYINRKGEF-KYVII 153 (479) Q Consensus 95 g~----~~~~~~------~~~~----~~~~~~----~~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~ 153 (479) |+ |+...+ .+.. +....+ .+.-|. + ...+.+++.+.+.+|.+|+.+..+.+|.+ .+..+ T Consensus 80 ~~~~~pp~~~~~La~~~~~~~~h~s~l~~k~n~l~~~~~Pnp~lT~~~f~~~v~d~ll~Gnay~~~~rn~~G~~~~L~pl 159 (376) T protein:vir:10 80 GEWFEPPVSFAGLAKSFRASTHHSSALFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPA 159 (376) T ss_pred CceecCCCCHHHHHHHHhhhHHhhhhHHHHhHHHHhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEe Confidence 22 221110 0000 000111 111122 1 23456677889999999999999888875 57888 Q ss_pred ccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 154 PAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNK 233 (479) Q Consensus 154 ~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479) +|..+.+..+... +|.... .+. ...|.++.+.++.. T Consensus 160 ~~~~vr~~~d~~~---------~~~~~~-~~~----~~~~~~~eViHir~------------------------------ 195 (376) T protein:vir:10 160 LAKYVRRKADFNG---------FVYVNG-WQE----RHEFEPDSVFQLVR------------------------------ 195 (376) T ss_pred CCcceEEEeeCCe---------EEEEEc-CCe----EEEEccccEEEecC------------------------------ Confidence 8887766554321 111111 111 11222333322210 Q ss_pred cccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceee--eecCCccc--hhhHHHHhhc------ Q lcl|Aclame:pro 234 EQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYV--LKEYPGTS--LQEFIDNIRY------ 303 (479) Q Consensus 234 ~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~--~~g~~~~~--~~~~~~~~~~------ 303 (479) +++ .....|.|.+......+..-+....-...-+.-.+.|-.+ .+|..... .+.....+.. T Consensus 196 ~~~---------~~~~yGls~~~~a~~si~l~~aa~~f~~~~f~NGa~pggIl~~~d~~l~~e~~~~lr~~~~~~~G~~N 266 (376) T protein:vir:10 196 PDI---------NQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPGN 266 (376) T ss_pred CCC---------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccc Confidence 000 0123477776655554443222211122223334445444 34422111 1111122211 Q ss_pred -ccceecCC---CCcceeeecC--CCHHHHHHHHHHHHHHHHHHhCCCCCccccc-------ccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 -YKSIKVDG---GGGVDKLEIN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNT-------GDKSGVALKFLYSLLDLK 370 (479) Q Consensus 304 -~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-------g~~Sg~Ai~~~~~~l~~k 370 (479) +..+.+.. +.++++.... .....+.+..+..++.|...-.+|+.-.+.. +++......+....+.-. T Consensus 267 ~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~eq~~~~f~~~~L~Pl 346 (376) T protein:vir:10 267 FRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPL 346 (376) T ss_pred cCceeEecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHH Confidence 12223322 2345555443 3445577788888888888888886543321 221112222211111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCCCCCCHHHHH Q lcl|Aclame:pro 371 CSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKI 422 (479) Q Consensus 371 ~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e~a 422 (479) +.. |. ++.+ .+ +. + -+.|++..-..-.+.+ T Consensus 347 ~~~----ie----eln~----~L---~~------~-~~~F~~~~Llr~d~ka 376 (376) T protein:vir:10 347 QAR----FA----ELND----WL---GE------E-VVRFDDYEIPPAPVAA 376 (376) T ss_pred HHH----HH----HHHh----hc---cc------c-ccccChhHhhcccccC Confidence 111 11 1111 11 00 0 1344332211111111 No 264 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=56.84 E-value=0.45 Score=22.50 Aligned_cols=320 Identities=7% Similarity=0.029 Sum_probs=108.1 Q ss_pred HHHhhHHHHHHHHHHhccCCcccc------cccc-----cccccccccccccCcceeecchHHHHHHHHHhhhhccCeee Q lcl|Aclame:pro 32 ILKHRPEKYKQGEEYYYGNTDVNN------KRRY-----YLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVF 100 (479) Q Consensus 32 ~~~~~~~~~~~~~~yy~g~~~~~~------~~~~-----~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~ 100 (479) |.+.+.. .+.+-..+...... .... ..-..+...+. . +.+-.+.+...+ ..+.....|+.. T Consensus 1 m~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~-~-~~~~~~~~~~~~---~~~~~~~~pi~~ 72 (368) T protein:vir:79 1 MSRNKTR---RAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEV-L-DRRELLDYVECM---RMGQWYEPPMPW 72 (368) T ss_pred CCccccc---cchhccCcccccccccCcchhhccccCceEEEEcCCceee-c-chhhHHHHHHHH---hccchhccCcCH Confidence 2221110 00111111100000 0000 00000000000 0 000001111111 011111122221 Q ss_pred cC----------CchhHHH---HHHH-HHhcC-H-HHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEc Q lcl|Aclame:pro 101 NA----------DDDNLTK---LLND-LLGEE-F-DDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWD 163 (479) Q Consensus 101 ~~----------~~~~~~~---~~~~-~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d 163 (479) .+ ....... ++.- ..-|. + ...+..++.+.+.+|.+|+.+..+..|++ .+..++|..+...-+ T Consensus 73 ~~la~~~~~~~~h~~~~~~~~n~l~l~~~Pn~~~t~~~f~~l~~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~ 152 (368) T protein:vir:79 73 DGLARSFRAAAHHSSAVYVKRNILVSTFIPHPLLSRATFERLVLDWQVFGNAYLERRENVLGGTIRLDTPLAKYVRRGLD 152 (368) T ss_pred HHHHHHHhhccccchhhhhhcchhhhhcCCCcCCCHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEeCcccceeecc Confidence 10 0000000 1111 12232 2 12346678889999999999999888875 466777776653222 Q ss_pred CCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceE Q lcl|Aclame:pro 164 SKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFI 243 (479) Q Consensus 164 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv 243 (479) .. . +|.+. ..+.. ..|.++.+.+++. +++. T Consensus 153 ~~----~-----~~~~~-~~~~~----~~~~~~dIihir~------------------------------~~~~------ 182 (368) T protein:vir:79 153 LN----T-----YFFVQ-NWQQP----YTFAAGSVFHLQE------------------------------PDIN------ 182 (368) T ss_pred CC----E-----EEEEe-cCCeE----EEEccccEEEecC------------------------------CCCC------ Confidence 11 0 11111 11111 0122222222110 0000 Q ss_pred EecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeee--ecCCccc--hhhHHHHhhc-------ccceecCC- Q lcl|Aclame:pro 244 PFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL--KEYPGTS--LQEFIDNIRY-------YKSIKVDG- 311 (479) Q Consensus 244 ~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~--~g~~~~~--~~~~~~~~~~-------~~~~~~~~- 311 (479) +...|.|.+......+..-+....-..+-++-.+.|-.++ +|....+ .+.....++. +..+.+.. T Consensus 183 ---~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~NGa~~~gil~~~~~~l~~e~~~~lk~~~~~~~G~~N~g~~~vl~~~ 259 (368) T protein:vir:79 183 ---QEVYGLPEYLSALNATWLNESATLFRRRYYKNGSHAGFILYMTDAAQKQEDVDTLREAMKSAKGPGNFRNLFMYAPN 259 (368) T ss_pred ---CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHHHHHHHHHHHhcCCcccCceeEecCC Confidence 1235778777666555543333322333344455555444 3321111 1111112211 22333322 Q ss_pred --CCcceeeecCC--CHHHHHHHHHHHHHHHHHHhCCCCCccccccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 --GGGVDKLEINI--PVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKS--GVALKFLYSLLDLKCSKTEKKFKKAIREL 385 (479) Q Consensus 312 --~~~~~~~~~~~--~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~S--g~Ai~~~~~~l~~k~~~~~~~~~~~l~~~ 385 (479) ++++++..... ....+.+..+...+.|...-.+|+.-.+.....| ...++-.. ...+...|.-+ T Consensus 260 g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~e~~~----------~~f~~~~l~Pl 329 (368) T protein:vir:79 260 GKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPPQLMGIIPNNTGGFGDVEKAA----------MVFARNEVKPL 329 (368) T ss_pred CCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCCHHHccccCCCCCccccHHHHH----------HHHHHHHHHHH Confidence 23455554433 3455777778888888888888865443221111 01111100 01111112111 Q ss_pred HHHHHHHHHhcCCCccccceeeEEeCCCC--CCCHHHHHHHHHHHh Q lcl|Aclame:pro 386 LWFVCEYLKISGNKSYDYKTVQITFNHSM--IINEAEKIDMAAKST 429 (479) Q Consensus 386 ~~li~~~~~~~~~~~~~~~~i~i~f~~~~--p~d~~e~a~~~~k~~ 429 (479) ++.+..+....+. . .+.|++.. ..|....++...+.+ T Consensus 330 ~~~ie~ln~~l~~-----e--~~rF~~~~l~~~D~~a~a~~~~rsa 368 (368) T protein:vir:79 330 QDRLLAINDWIGD-----E--VVRFAPYALGGHDQPAAAPGGQRSA 368 (368) T ss_pred HHHHHHHHhccCc-----c--eeeechhHhhcccccccCCcccccC Confidence 1211111111110 0 13343221 122222233222222 No 265 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=55.37 E-value=0.48 Score=22.33 Aligned_cols=307 Identities=9% Similarity=0.028 Sum_probs=103.5 Q ss_pred HHHhhHHHHHH---HHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecC------ Q lcl|Aclame:pro 32 ILKHRPEKYKQ---GEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNA------ 102 (479) Q Consensus 32 ~~~~~~~~~~~---~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~------ 102 (479) |.+++..+... ...--.+++..........-..+..++. -+.+-.+.|....- .+....-|+...+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v--~~~~~~~~y~~~~~---~~~~~~pp~~~~~la~~~~ 75 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPV--LDGRGILDYLECWP---NGRWYEPPLSMEGLAKSVG 75 (350) T ss_pred CCccccCCCcCccccCCcchhhhccccccceEEEEeCCceee--cCcchhhHHHHHhh---cCccccCCCCHHHHHHHHh Confidence 22211100000 0000000000000000000000111100 00000011111110 0111111111110 Q ss_pred Cc--------hhHHHHHHHHHhcC-H-HHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceE Q lcl|Aclame:pro 103 DD--------DNLTKLLNDLLGEE-F-DDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELV 171 (479) Q Consensus 103 ~~--------~~~~~~~~~~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~ 171 (479) .+ -..+.+...+.-|. + ...+.+++.+.+.+|.+|+.+..+..|++ .+..++|..+.+.-+.. . T Consensus 76 ~~~~h~~~l~~k~n~l~~~~~Pn~~~t~~~f~~~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~vr~~~~~~----~- 150 (350) T protein:vir:11 76 SSVYLQSGLKFKRNMLAKTFIPHRLLSRATFEQFSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRRGTDLE----T- 150 (350) T ss_pred hhhhhccchhhhhhhhhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCceeEeeecCC----e- Confidence 00 00111112223343 2 23356778889999999999999888875 57777777665432211 0 Q ss_pred EEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCC Q lcl|Aclame:pro 172 AFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKC 251 (479) Q Consensus 172 ~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g 251 (479) +|.+. ..+.. ..|.++.+.+++. +++. +...| T Consensus 151 ----~~~~~-~~~~~----~~~~~~eVihir~------------------------------~~~~---------~~~yG 182 (350) T protein:vir:11 151 ----FYQVR-SWKDE----HEFEKGSVIQLRE------------------------------ADIN---------QEIYG 182 (350) T ss_pred ----EEEEe-eCCeE----EEECcccEEEeCC------------------------------CCCC---------CCccc Confidence 11111 11111 1122233322210 0000 11247 Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccceeee--ecCCcc--chhhHHHHhhc-------ccceecCCC---Cccee Q lcl|Aclame:pro 252 VSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL--KEYPGT--SLQEFIDNIRY-------YKSIKVDGG---GGVDK 317 (479) Q Consensus 252 ~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~--~g~~~~--~~~~~~~~~~~-------~~~~~~~~~---~~~~~ 317 (479) .|.+......+..-+....-...-+.-.+.|-.++ +|.... +.+.....+.. +..+.+..+ .++++ T Consensus 183 ls~~~~a~~si~l~~~a~~~~~~~f~NGa~~~gil~~~~~~ls~e~~~~l~~~~~~~~G~~N~~~~~v~~~~g~~~g~~~ 262 (350) T protein:vir:11 183 VPEWFCALQSALLNESATLFRRKYYNNGSHAGFILYMTDAAQNEEDIDALRTALKTAKGPGNFRNLFVYAPNGKKEGIQL 262 (350) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCceeeecCCCCccceEE Confidence 77776655544432222222222333344554443 442211 11111111211 122333222 23455 Q ss_pred eecC--CCHHHHHHHHHHHHHHHHHHhCCCCCccccc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 318 LEIN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNT-------GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWF 388 (479) Q Consensus 318 ~~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-------g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~l 388 (479) .... .....+.+..+...+.|...-.+|+.-.+.. +++...+..+....+.- .+..+ +++.+ T Consensus 263 ~pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~L~P----~~~~i----e~ln~- 333 (350) T protein:vir:11 263 IPVSEVAAKDEFGSIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGSISDAAAVWASLELAP----MQTRL----QQVNE- 333 (350) T ss_pred EEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcCCHHHHHHHHHHHHHHH----HHHHH----HHHHh- Confidence 4333 3345577888888888888888886543321 22222222221111111 11111 11111 Q ss_pred HHHHHHhcCCCccccceeeEEeCCCCCCCH Q lcl|Aclame:pro 389 VCEYLKISGNKSYDYKTVQITFNHSMIINE 418 (479) Q Consensus 389 i~~~~~~~~~~~~~~~~i~i~f~~~~p~d~ 418 (479) .+... .+.|.+....+. T Consensus 334 ---~l~~~----------~~~F~~~~~~~l 350 (350) T protein:vir:11 334 ---MIGEE----------VVRFAQFDAPGL 350 (350) T ss_pred ---hcCcc----------ccccCcccccCC Confidence 11110 122332222222 No 266 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=55.04 E-value=0.49 Score=22.29 Aligned_cols=299 Identities=9% Similarity=0.102 Sum_probs=99.7 Q ss_pred HHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhh-hcc----CeeecC---- Q lcl|Aclame:pro 32 ILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYS-VGN----PIVFNA---- 102 (479) Q Consensus 32 ~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l-~g~----~~~~~~---- 102 (479) +.+.+..+-.... .+..-.......-..+..++ ++. .+.+.+-. ++. .|+ |+...+ T Consensus 1 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~--------v~~-~~~~~~~~-~~~~~~~~~~pp~~~~~la~~ 65 (344) T protein:vir:56 1 MSKKKGKTPQPAA-----KTMTASAPKMEAFTFGEPVP--------VLD-RRDILDYV-ECISNGRWYEPPVSFTGLAKS 65 (344) T ss_pred CCCCCCCCCchhh-----HHhhcCCCceEEEEcCCcee--------ecC-cchhhhHH-HhhhcCccccCCCCHHHHHHH Confidence 1111110000000 00000000000000000000 000 00011111 111 111 111110 Q ss_pred ----------CchhHHHHHHHHHhcC-H-HHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCc Q lcl|Aclame:pro 103 ----------DDDNLTKLLNDLLGEE-F-DDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRE 169 (479) Q Consensus 103 ----------~~~~~~~~~~~~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~ 169 (479) ---..+.+...+.-|. + ...+..++.+.+.+|.+|+.+..+..|++ .+..++|..+.+.-+.. T Consensus 66 ~~a~~~h~s~i~~k~n~l~~~~~Pnp~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~---- 141 (344) T protein:vir:56 66 LRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---- 141 (344) T ss_pred HhhhhhhCccceehhhhHHhhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEEeecCC---- Confidence 0001111112222232 2 12345677888999999999988888875 46666666554322211 Q ss_pred eEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCC Q lcl|Aclame:pro 170 LVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE 249 (479) Q Consensus 170 ~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~ 249 (479) ++|.+. ..+.. ..|.++.+.+++. +++ .+.. T Consensus 142 -----~~~~~~-~~g~~----~~~~~~dIiHir~------------------------------~~~---------~~~~ 172 (344) T protein:vir:56 142 -----VYWWVP-SFNEP----TAFAPGSVFHLLE------------------------------PDI---------NQEL 172 (344) T ss_pred -----EEEEEe-cCCeE----EEEcCccEEEECC------------------------------CCC---------CCCc Confidence 011111 11111 0122222222110 000 0123 Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeee--ecCCcc--chhhHHHHhhc------ccceec--CC--CCcc Q lcl|Aclame:pro 250 KCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL--KEYPGT--SLQEFIDNIRY------YKSIKV--DG--GGGV 315 (479) Q Consensus 250 ~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~--~g~~~~--~~~~~~~~~~~------~~~~~~--~~--~~~~ 315 (479) .|.|.+.....-+..-.....-...-+.-.+.|-.++ ++.... ..+.....++. ++.+.+ ++ ..++ T Consensus 173 ~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~d~~ls~e~~~~lk~~~~~~~g~~~~r~l~l~~p~g~~~G~ 252 (344) T protein:vir:56 173 YGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGI 252 (344) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCCCCccceEEecCCCCccce Confidence 4777666544433322221111222233344555544 342211 11112222211 122222 21 2345 Q ss_pred eeeecC--CCHHHHHHHHHHHHHHHHHHhCCCCCccccc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 316 DKLEIN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNT-------GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELL 386 (479) Q Consensus 316 ~~~~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-------g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~ 386 (479) ++.... .....+.+..+..++.|...-.+|+.-.+.. +++...+..+....+.=.+ ..+ +++ T Consensus 253 ~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llGi~~~~t~~~~n~eq~~~~f~~~tL~Pl~----~~i----e~~- 323 (344) T protein:vir:56 253 KIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQ----DRI----REI- 323 (344) T ss_pred eEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHH----HHH----HHH- Confidence 554433 3345577788888888988888887544422 1211122222111111111 111 111 Q ss_pred HHHHHHHHhcCCCccccceeeEEeCCCCCCCHHH Q lcl|Aclame:pro 387 WFVCEYLKISGNKSYDYKTVQITFNHSMIINEAE 420 (479) Q Consensus 387 ~li~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e 420 (479) ...++. . .+.|.+..-.+... T Consensus 324 ---n~~l~~---~-------~~~F~~y~l~~~~~ 344 (344) T protein:vir:56 324 ---NGWIGQ---E-------VIRFKNYSLDTDNG 344 (344) T ss_pred ---Hhhhcc---c-------cccCCCccccccCC Confidence 111111 0 13343333332222 No 267 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=54.28 E-value=0.51 Score=22.20 Aligned_cols=326 Identities=11% Similarity=0.034 Sum_probs=124.3 Q ss_pred HHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeec---CCc-------h- Q lcl|Aclame:pro 37 PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFN---ADD-------D- 105 (479) Q Consensus 37 ~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~---~~~-------~- 105 (479) ..-+.++..+++.+...-..+.+. ..+.. ...........|+.+|+-+..-|+.+- .++ + T Consensus 1 M~~f~k~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~~~~ 71 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLNNDTQRVTA--WQNEA-------VEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISM 71 (378) T ss_pred CchhhhhhhhhhcccccCCcceee--eeccc-------hhhhhHHHHHHHHHHHHhHhhCceeEEEEecccccccccccc Confidence 112222222332221111111110 00000 001123344567777777766676531 111 0 Q ss_pred hHHHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEE-EEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEee Q lcl|Aclame:pro 106 NLTKLLNDLL--GEE---FDDTITELYLNASNKGVEWLH-PYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYI 179 (479) Q Consensus 106 ~~~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~-v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~ 179 (479) ....+...+. -|. -..+...+....+..|.+|++ +..+.+|.+...+ |. T Consensus 72 ~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~---------~~---------------- 126 (378) T protein:vir:85 72 AGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDLL---------FA---------------- 126 (378) T ss_pred ccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEEE---------ec---------------- Confidence 1112222222 132 334555677888899999975 3444444321111 00 Q ss_pred ecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHH Q lcl|Aclame:pro 180 EDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYK 259 (479) Q Consensus 180 ~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~ 259 (479) .++. .|.++.+.+++ ..-.+.+....+. T Consensus 127 --~~~~------~~~~~dvih~~--------------------------------------------~~~~~~~~~~~~~ 154 (378) T protein:vir:85 127 --NDKK------EYKPEELVRLV--------------------------------------------SPFYINEDTSILD 154 (378) T ss_pred --CCCE------EEcccceEEEe--------------------------------------------cCcCccchhhHHH Confidence 0110 11122222211 1000011111122 Q ss_pred HHHHHHHHHHHHHHHHHHHhccce--eeeecCCccch-hh----HHHHh-------hcccceecCCCCcceeeecCCCHH Q lcl|Aclame:pro 260 SLIDIYDNNISTLADNLDEIQEVI--YVLKEYPGTSL-QE----FIDNI-------RYYKSIKVDGGGGVDKLEINIPVE 325 (479) Q Consensus 260 ~lid~~~~~~s~~~~~~~~~~~p~--l~~~g~~~~~~-~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 325 (479) ...+.++.. +. .+.|- +...+...... ++ +...+ ..++++.++++.+++.+..+.... T Consensus 155 ~a~~~~~~~-------~~-~~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~ 226 (378) T protein:vir:85 155 NALASIQTK-------LE-QGKLRGLLKINAFLDIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVL 226 (378) T ss_pred HHHHHHHHH-------Hh-cCCcceEEEeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEeccCChhhh Confidence 222322221 11 12222 22222211111 11 11111 223456666666666555443333 Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------- Q lcl|Aclame:pro 326 AKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGN------- 398 (479) Q Consensus 326 ~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~------- 398 (479) .+ ..++.+++.|+..-++|+.-..+ . ..+. . ....+...|.-.++.|...+...-- T Consensus 227 ~~-~~~~~~~~~Ia~~fgVPp~~l~~--s-~~e~---~----------~~~f~~~tL~P~~~~ie~~l~~kLl~~~er~~ 289 (378) T protein:vir:85 227 NK-DEIELIKSELLTGYFMNENILLG--T-ATQE---Q----------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRV 289 (378) T ss_pred hH-HHHHHHHHHHHHHhCCCHHHhcC--C-chHH---H----------HHHHHHHHHHHHHHHHHHHHHhhcCChhhhhh Confidence 33 34566777787777777543321 1 1111 0 0112333333333333332221110 Q ss_pred --CccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHH-----HHHHHHHHHHHHHHhhhhc Q lcl|Aclame:pro 399 --KSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDVN-----DELERLKKQEDTQKEYDDL 467 (479) Q Consensus 399 --~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~~-----~El~~i~~E~~~~~~~~~~ 467 (479) ......++.+.+...+-.|..+.++.+.++ .|+++.-.++++++.- ++-+ .-+..+..- ..+. T Consensus 290 ~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~gGD~~~~~~N~~~~~~~------~~~~ 363 (378) T protein:vir:85 290 VKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDIYIANLNAVAVKNL------SDLQ 363 (378) T ss_pred hhhccccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccccccc------hhhc Confidence 001112344445666778899999988886 5789999998887542 2211 011111100 0111 Q ss_pred cCCCCCCCcCCC Q lcl|Aclame:pro 468 IPNNQDGVIDET 479 (479) Q Consensus 468 ~~~~~~~~~det 479 (479) ...+....+||+ T Consensus 364 ~~~~~~~~~~e~ 375 (378) T protein:vir:85 364 GSRKDVASTDET 375 (378) T ss_pred CccCCCCCCCCC Confidence 111222334444 No 268 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=50.18 E-value=0.62 Score=21.73 Aligned_cols=302 Identities=9% Similarity=0.085 Sum_probs=99.0 Q ss_pred HHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHH-----------HHHhhhhccCeee Q lcl|Aclame:pro 32 ILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVD-----------QKVGYSVGNPIVF 100 (479) Q Consensus 32 ~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~-----------~~a~~l~g~~~~~ 100 (479) +.+.+..+-... ..+..-.......-..+..++.. ..+-.+.+....-+ .++..+-..+..- T Consensus 1 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~f~~p~~v~--~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~ 73 (344) T protein:vir:20 1 MSKKKGKTPQPA-----AKTMTASGPKMEAFTFGEPVPVL--DRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHS 73 (344) T ss_pred CCcccCCCCcch-----hhhhhccCCceEEEEcCCceEec--CcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhhhhC Confidence 221111000000 00000000000000001111100 00000111100000 0000000000000 Q ss_pred cCCchhHHHHHHHHHhcC-HH-HHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEE Q lcl|Aclame:pro 101 NADDDNLTKLLNDLLGEE-FD-DTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFY 177 (479) Q Consensus 101 ~~~~~~~~~~~~~~~~n~-~~-~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~ 177 (479) ++---..+.+...+.-|. +. ..+..++.+.+.+|.+|+.+..+..|++ .+..++|..+....+.. ++| T Consensus 74 ~~i~~k~n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~~~~---------~~~ 144 (344) T protein:vir:20 74 SPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYW 144 (344) T ss_pred ccceehhhhHHHhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCCceeEeeecCC---------EEE Confidence 000001112222233343 21 2345677888999999999988888875 35566655544322111 011 Q ss_pred eeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecC-----CCCCC Q lcl|Aclame:pro 178 YIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN-----NEKCV 252 (479) Q Consensus 178 ~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~ 252 (479) .+. ..+.. ..|.++.+ +++++ ...|. T Consensus 145 ~~~-~~~~~----~~~~~~eI--------------------------------------------iHir~~~~~~~~yGl 175 (344) T protein:vir:20 145 WVP-SFNEP----TAFAPGSV--------------------------------------------FHLLEPDINQELYGL 175 (344) T ss_pred EEc-cCCeE----EEEcCccE--------------------------------------------EEeCCCCCCCCcccc Confidence 111 11110 01112222 22221 23477 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccceeee--ecCCcc--chhhHHHHhhc------ccceec--CC--CCcceee Q lcl|Aclame:pro 253 SDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL--KEYPGT--SLQEFIDNIRY------YKSIKV--DG--GGGVDKL 318 (479) Q Consensus 253 s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~--~g~~~~--~~~~~~~~~~~------~~~~~~--~~--~~~~~~~ 318 (479) |.+......++.-.....-..+-+.-.+.|-.++ ++.... ..+.....++. ++.+.+ ++ ..++++. T Consensus 176 s~~~~a~~si~l~~~a~~~~~~~f~NGa~p~~Il~~~d~~l~~e~~~~ik~~~~~~~g~~n~r~l~l~~p~g~~~gi~~~ 255 (344) T protein:vir:20 176 PEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKII 255 (344) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHHhcCCCCccceEEecCCCCccceeEE Confidence 7666544443322222212222233345555554 332211 11111122211 122222 22 2345555 Q ss_pred ecC--CCHHHHHHHHHHHHHHHHHHhCCCCCccccc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 319 EIN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNT-------GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFV 389 (479) Q Consensus 319 ~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-------g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li 389 (479) ... .....+.+..+..++.|...-..|+.-.+.. +++...+..+....+.-.+. .| ++ + T Consensus 256 pis~~~~d~qf~e~k~~s~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~P~~~----~~----e~----i 323 (344) T protein:vir:20 256 PLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQD----RI----RE----I 323 (344) T ss_pred EcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHH----HH----HH----H Confidence 433 3344577778888888888888886544321 22222222221111111111 11 11 1 Q ss_pred HHHHHhcCCCccccceeeEEeCCCCCCCHHH Q lcl|Aclame:pro 390 CEYLKISGNKSYDYKTVQITFNHSMIINEAE 420 (479) Q Consensus 390 ~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~e 420 (479) ..++ +.. .+.|.++.-....| T Consensus 324 n~~l---g~~-------~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 324 NGWL---GQE-------VIRFKNYSLDTDND 344 (344) T ss_pred HHhc---CCc-------ccccCccccccCCC Confidence 1222 211 13343332222222 No 269 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=43.52 E-value=0.84 Score=20.99 Aligned_cols=327 Identities=12% Similarity=0.062 Sum_probs=125.9 Q ss_pred HHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeee---cCCc-------h- Q lcl|Aclame:pro 37 PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVF---NADD-------D- 105 (479) Q Consensus 37 ~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~---~~~~-------~- 105 (479) ..-..+...+.+.....-+.+.+.. .+... -.........|+.+|+-+..-|+.+ +..+ + T Consensus 1 M~if~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~v~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~~ 71 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNNDTQRVTAW--QNEAV-------EYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISM 71 (378) T ss_pred CchhHHhHhhhhcccccCcceeeee--ecchh-------hhhhHHHHHHHHHHHHhHhhCceeeeeeccccccccccccc Confidence 1111222222222111111111110 00000 0111334567777777777777643 1111 0 Q ss_pred hHHHHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEE-EEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEee Q lcl|Aclame:pro 106 NLTKLLNDLL--GE---EFDDTITELYLNASNKGVEWLH-PYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYI 179 (479) Q Consensus 106 ~~~~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~-v~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~ 179 (479) ....+...+. -| .-..+...+....+..|.+|++ ++.+.+|.+...+ +. T Consensus 72 ~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~------------------------~~- 126 (378) T protein:vir:94 72 AGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLDLL------------------------FA- 126 (378) T ss_pred ccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEE------------------------Ee- Confidence 1112222232 13 2344556678888899999875 4444444331110 00 Q ss_pred ecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHH Q lcl|Aclame:pro 180 EDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYK 259 (479) Q Consensus 180 ~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~ 259 (479) .++. .|..+.+.+++ ++++ ...+.+.+ . T Consensus 127 --~~~~------~~~~~dvih~~--------------------------------~~~~---------~~~~~~~~---~ 154 (378) T protein:vir:94 127 --NDKK------EYKPEELVRLT--------------------------------SPFY---------INEDTSIL---D 154 (378) T ss_pred --cCcE------Eechhceeeec--------------------------------CcCC---------cccchhHH---H Confidence 0110 01112222211 0000 00111212 2 Q ss_pred HHHHHHHHHHHHHHHHHHHhc-cceeeeecCCccc-hhh----HHHHh-------hcccceecCCCCcceeeecCCCHHH Q lcl|Aclame:pro 260 SLIDIYDNNISTLADNLDEIQ-EVIYVLKEYPGTS-LQE----FIDNI-------RYYKSIKVDGGGGVDKLEINIPVEA 326 (479) Q Consensus 260 ~lid~~~~~~s~~~~~~~~~~-~p~l~~~g~~~~~-~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (479) .+..+++.. +...+ ..++...+..... .++ +...+ ..++++.++++.+++.+..+..... T Consensus 155 ~~~~~~~~~-------~~~~~~~g~l~~~~~l~~~~~~~~~e~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~~~~ 227 (378) T protein:vir:94 155 NALASIQTK-------LEQGKLRGLLKINAFLDIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN 227 (378) T ss_pred HHHHHHHHH-------HhhCCcccceeeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceeccCCceEEEccCChHHhh Confidence 222222221 11111 1222222221111 111 11111 1234566666666665554433333 Q ss_pred HHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------C Q lcl|Aclame:pro 327 KKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS---------G 397 (479) Q Consensus 327 ~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~---------~ 397 (479) + +.++.+++.|+..-++|+.-.. |..+... ....+...|.-.++.+...+... + T Consensus 228 ~-~~~~~~~~~Ia~~fgvPp~~l~--g~~~e~~--------------~~~f~~~tl~P~~~~ie~~l~~~Ll~~~e~~~g 290 (378) T protein:vir:94 228 K-DEIDLIKSELLTGYFMNENILL--GTATQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVV 290 (378) T ss_pred H-HHHHHHHHHHHHHhCCCHHHhc--CCchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhh Confidence 3 5556677777777677653321 1111100 01122223333333332222211 1 Q ss_pred CCccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHH-----HHHHHHHHHHHHHhhhhcc Q lcl|Aclame:pro 398 NKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDVND-----ELERLKKQEDTQKEYDDLI 468 (479) Q Consensus 398 ~~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~~~-----El~~i~~E~~~~~~~~~~~ 468 (479) -.......+.+.++..+-.|..+.++.+.++ .|+++.-.++++++.- ++-+. .+..+..-. .... T Consensus 291 ~~~~~~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t~NE~R~~~g~~p~~ggd~~~~~~n~~~~~~~~------~~~~ 364 (378) T protein:vir:94 291 KGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLS------DLQG 364 (378) T ss_pred hhhcccceeEeecchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeecccccchhcch------hccc Confidence 1111123455666777788999999999886 5799999988887542 22110 111111000 0011 Q ss_pred CCCCCCCcCCC Q lcl|Aclame:pro 469 PNNQDGVIDET 479 (479) Q Consensus 469 ~~~~~~~~det 479 (479) ..+....+||+ T Consensus 365 ~~~~~~~~~e~ 375 (378) T protein:vir:94 365 NRKDVTSTDET 375 (378) T ss_pred ccCCCCCCCCC Confidence 11222334444 No 270 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=41.72 E-value=0.91 Score=20.80 Aligned_cols=428 Identities=12% Similarity=0.058 Sum_probs=159.2 Q ss_pred CCCcc---cCc-----------------HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCccccccccc Q lcl|Aclame:pro 1 MLNIY---ISE-----------------TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYY 60 (479) Q Consensus 1 ~~~~~---~~~-----------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~ 60 (479) |+.-+ ++. -..+..-..+.. ..+.-.+.-....+...+|+.+..+++-. T Consensus 1 m~~lfgf~i~~~~~~~~~S~vpp~~~~~~~~i~~g~~g~~-v~~~g~~~~~n~~eLI~~YR~ma~~pEVd---------- 69 (564) T protein:vir:10 1 MSQLFGFLINEKEGQKGQSPVPPNDEASVSTVAGGYFGTY-VDTSGGQNSRNEYELIRRYRDMSLHPEVD---------- 69 (564) T ss_pred CcchhcceeeeeccCCCCCcccCCcCCChhhhhcccccee-eecccccchhhHHHHHHHHHHHhhccchh---------- Confidence 33222 000 011100000000 00000000001111122333332222211 Q ss_pred ccccccccccccCcceeecchHHHHHHHH-HhhhhccCeeecCCchhHHHH----H----HHHH-hcCHHHHHHHHHHHH Q lcl|Aclame:pro 61 LLDGAKVDDFTKVNNKAINNYHKLLVDQK-VGYSVGNPIVFNADDDNLTKL----L----NDLL-GEEFDDTITELYLNA 130 (479) Q Consensus 61 ~~~~~~~~~~~~~~~ri~~n~~~~iv~~~-a~~l~g~~~~~~~~~~~~~~~----~----~~~~-~n~~~~~~~~~~~~~ 130 (479) +=...||+.. +.--..+|+.+..++.++.+. + +.+. -=+|+....+..|.+ T Consensus 70 -------------------~Av~eIVneaIv~d~~~~pV~vdL~~~~~s~siK~kI~eEF~~Il~ll~F~~~~~e~fR~W 130 (564) T protein:vir:10 70 -------------------SAIDEIVNEFVVNDGDDKPVEVDLQNLEIGSGVKKKIRDEFNRILRMMNFNVNAHEIIRNW 130 (564) T ss_pred -------------------hHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhh Confidence 1112222221 111233455555444332222 2 1122 137889999999999 Q ss_pred HhCCeEEEEEEeCC----CCceEEEEEccceeEEEEcCCCCCc--eEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEc Q lcl|Aclame:pro 131 SNKGVEWLHPYINR----KGEFKYVIIPAEEAIPIWDSKRQRE--LVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIER 204 (479) Q Consensus 131 ~~~G~~~~~v~~d~----~~~~~i~~~~p~~~~~~~d~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~ 204 (479) .+.|+.|...-+|. +|-..+..+||+.+-.++..-.... -...++-+. ..+.+.+. ..+|... T Consensus 131 YVDgRi~fHkiid~~~pk~GI~eLr~lDPr~i~~vr~i~~~~~~~~~~v~k~~~---------~~~~y~~~--~Eyy~Yn 199 (564) T protein:vir:10 131 YVDGRSHYHKVIDLDNPKKGILELRYIDSLKIRKVRQKLKDVDPNRKEIEKGTA---------LQYDYGDF--IEYYIYN 199 (564) T ss_pred hhcceEEEEEEeeCCChhhhhhhhhhhcccceeeeeeeccccccccceeeeeee---------eecccccc--ccceeec Confidence 99999998887763 3545689999999887774322110 011111000 00111110 1112221 Q ss_pred CCccccccccccccccccccccccccccccccccccceEEe----cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 205 GNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPF----KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQ 280 (479) Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~----~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~ 280 (479) ..+........ .+.. .+.......-+-..|+.++. .++..-.|-+...+-....| +++-|.+..-+..+ T Consensus 200 p~~~~g~~~~~-----~~~~-~~~~~~~ikI~~daI~y~hSGL~d~~~~~i~gyLhkAIKp~NQL-kmlEDAlVIYRitR 272 (564) T protein:vir:10 200 PKGFAGNIPMV-----TGSM-DWSNQEGIKIASDAIAQSTSGLMDLNKKMTLSFLHKAIKSLNQL-RMIEDSLVIYRLSR 272 (564) T ss_pred cccccCccccc-----cccc-ccccccceeechhhcceecccceeCCCCceeccchhhhHhHHhh-HHHHhhHHHHhhhc Confidence 11110000000 0000 00000001111111221111 01111123333333333333 45677777778888 Q ss_pred cceeeeecC--CccchhhH-------HHHhhc----------------ccce----ec---CCCCcceeeecC--CCHHH Q lcl|Aclame:pro 281 EVIYVLKEY--PGTSLQEF-------IDNIRY----------------YKSI----KV---DGGGGVDKLEIN--IPVEA 326 (479) Q Consensus 281 ~p~l~~~g~--~~~~~~~~-------~~~~~~----------------~~~~----~~---~~~~~~~~~~~~--~~~~~ 326 (479) .|-+-+.-. +..+.... ..+.+. ...+ -+ +++.+.+.-+.+ .+.. T Consensus 273 APeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGevrddrk~msMlEDyWLPRReGgrgTEItTLpGgqnLg- 351 (564) T protein:vir:10 273 APERRIFYIDVGNLPKVKAEQYLRDVMSRYRNKLVYDGQTGEIRDDKKHMSMLEDFWLPRREGGRGTEITTLPGGQNLG- 351 (564) T ss_pred cccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceecccchhhhhHhhhcccccCCCcccceeeccccCCcc- Confidence 775543321 11111111 111110 0000 01 122223333333 2221 Q ss_pred HHHHHHHHHHHHHHHhCCCC--Cccc----ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 327 KKELLDRLEKNIIIFGQGVN--PESQ----NTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKS 400 (479) Q Consensus 327 ~~~~~~~l~~~i~~~s~~~~--~~~~----~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~ 400 (479) -..-+.-+++-++.--.+|- +..+ .+|.. .+|--.+......+.+.+..|...+.++++.=+-+-++....+ T Consensus 352 em~DV~YF~kKLY~aLnVP~SRl~~e~~~f~~Gr~--~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~ee 429 (564) T protein:vir:10 352 ELKDVEYFKKKLYNSLNLPPSRLTDDNKAFNLGKS--TEILRDELKFTKFIGRLRKRFAQLFHDILKTQLILKGIITPED 429 (564) T ss_pred hHHHHHHHHHHHHHHhCCCcccccCCCceeecccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHH Confidence 12233334444444445442 1212 12322 2333333344555677777777777777764333333333222 Q ss_pred ccc--ceeeEEeCCCCCCCHHHHHH-------HHHHH---hc-cCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 401 YDY--KTVQITFNHSMIINEAEKID-------MAAKS---TG-IVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYD 465 (479) Q Consensus 401 ~~~--~~i~i~f~~~~p~d~~e~a~-------~~~k~---~g-~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~ 465 (479) ++. ..+.+.|..--.-.+...++ ++..+ +| .+|.+++.+.+=-.+| ..++.++|++|..+-.-.+ T Consensus 430 W~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~ 509 (564) T protein:vir:10 430 WDDMEEHIQYDFLFDNHFNELKEQEMQLQRVNLATQMDPFVGKYFSTEYIRRKILMQTENEFKEIDKQMKSDIESGLAID 509 (564) T ss_pred HHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCC Confidence 222 45777785444433433333 33333 24 4799999987533443 4466677777765311000 Q ss_pred ---hccC--CCCC---------CCcCCC Q lcl|Aclame:pro 466 ---DLIP--NNQD---------GVIDET 479 (479) Q Consensus 466 ---~~~~--~~~~---------~~~det 479 (479) ..+. .... +..++. T Consensus 510 P~e~~~~~~~~~~~~~~~p~~~~~~~~~ 537 (564) T protein:vir:10 510 PIQVNMLDDMEKQNQAFAPELQAAQDDL 537 (564) T ss_pred chhhhcCCCccCCCCcCCcchhhhcccc Confidence 0000 0000 000110 No 271 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=41.69 E-value=0.92 Score=20.79 Aligned_cols=304 Identities=10% Similarity=0.124 Sum_probs=101.0 Q ss_pred HHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeecC--------- Q lcl|Aclame:pro 32 ILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNA--------- 102 (479) Q Consensus 32 ~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~--------- 102 (479) |.+.+..+..... .+..........-..+..++. ...+-...+....-+ +..+.=|+...+ T Consensus 1 m~~~~~~~~~~~~-----~~~~~~~~~~~~~~f~~p~~v--~~~~~~~~~~~~~~~---~~~~~pp~~~~~la~~~~a~~ 70 (344) T protein:vir:60 1 MSKKKGKTLQPAA-----KKMTASAPKMEAFTFGEPVPV--LDRRDILDYVECISN---GRWYEPPISFTGLAKSLRAAV 70 (344) T ss_pred CCcccCCCCCchH-----HhhcCCcCcEEEEEcCCceee--cCCcchhHHHHhhhc---CccccCCCCHHHHHHHHHhhh Confidence 2211110000000 000000000000001111110 000000111111100 000000111110 Q ss_pred -----CchhHHHHHHHHHhcC-HH-HHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEE Q lcl|Aclame:pro 103 -----DDDNLTKLLNDLLGEE-FD-DTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFI 174 (479) Q Consensus 103 -----~~~~~~~~~~~~~~n~-~~-~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i 174 (479) =--..+.+...+.-|. +. ..+..++.+.+.+|.+|+.+..+..|++ .+..++|..+.+..+.. T Consensus 71 ~h~~~i~~k~n~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~i~rn~~G~~~~L~~l~~~~vr~~~~~~--------- 141 (344) T protein:vir:60 71 HHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--------- 141 (344) T ss_pred hhccchhhhhhHHHhhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCcceEEEeecCC--------- Confidence 0001112222233343 21 2345677889999999999998888876 46667666654432221 Q ss_pred EEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCch Q lcl|Aclame:pro 175 RFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSD 254 (479) Q Consensus 175 ~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~ 254 (479) ++|.+. ..+.. ..|.++.+.++.. +++ .+...|.|. T Consensus 142 ~~~~v~-~~~~~----~~~~~~eIiHir~------------------------------~~~---------~~~~yGlsp 177 (344) T protein:vir:60 142 VYWWVP-SFNEP----TAFAPGSVFHLLE------------------------------PDI---------NQELYGLPE 177 (344) T ss_pred eEEEEc-cCCeE----EEEcCccEEEEcC------------------------------CCC---------CCCcccccH Confidence 011111 11110 1112222222110 000 012357776 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceeee--ecCCcc--chhhHHHHhhc------ccceec--CC--CCcceeeec Q lcl|Aclame:pro 255 LTFYKSLIDIYDNNISTLADNLDEIQEVIYVL--KEYPGT--SLQEFIDNIRY------YKSIKV--DG--GGGVDKLEI 320 (479) Q Consensus 255 ~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~--~g~~~~--~~~~~~~~~~~------~~~~~~--~~--~~~~~~~~~ 320 (479) +.....-++.-.....-..+-+.-.+.|-.++ +|.... ..+.....++. ++.+.+ ++ ..++++... T Consensus 178 ~~~a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~~~ls~e~~~~ik~~~~~~~g~~~~r~~~l~~p~g~~~g~~~~pi 257 (344) T protein:vir:60 178 YLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPL 257 (344) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHHhcCCCCCcceEEecCCCCccceeEEEc Confidence 66544443322221111222233344454444 442211 11111122211 122222 21 224455443 Q ss_pred C--CCHHHHHHHHHHHHHHHHHHhCCCCCccccc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 N--IPVEAKKELLDRLEKNIIIFGQGVNPESQNT-------GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCE 391 (479) Q Consensus 321 ~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-------g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 391 (479) . .....+.+..+..++.|...-..|+.-.+.. +++...++.+....+.=.+. .| ++ +.. T Consensus 258 s~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~L~Pl~~----~~----e~----ln~ 325 (344) T protein:vir:60 258 SEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQD----RI----RE----ING 325 (344) T ss_pred CCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHH----HH----HH----HHH Confidence 3 3345577888888889988888886544322 22221222221111111111 11 11 112 Q ss_pred HHHhcCCCccccceeeEEeCCCCCCCHHH Q lcl|Aclame:pro 392 YLKISGNKSYDYKTVQITFNHSMIINEAE 420 (479) Q Consensus 392 ~~~~~~~~~~~~~~i~i~f~~~~p~d~~e 420 (479) ++ +.. .+.|.++....... T Consensus 326 ~l---g~~-------~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 326 WL---GQE-------VIRFKNYSLDTDNG 344 (344) T ss_pred hc---CCc-------ccccCccccCCCCC Confidence 22 111 12333222221111 No 272 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=41.45 E-value=0.93 Score=20.77 Aligned_cols=326 Identities=12% Similarity=0.061 Sum_probs=129.2 Q ss_pred HHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhccCeeec---CC----c---hh Q lcl|Aclame:pro 37 PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFN---AD----D---DN 106 (479) Q Consensus 37 ~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~---~~----~---~~ 106 (479) ..-..+...+-++.-.... .... . ................|+.+|+-+..-|+++- .. + +. T Consensus 1 Mg~f~~~~~~~~~~~~~~~-~~~~--~------~~~~~~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~~~~~~~~~~ 71 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLNNDT-QRVT--A------WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISM 71 (378) T ss_pred CccchhhhhhhcccccCCc-ceee--e------cccchhhHHHHHHHHHHHHHHhhhhhCceeEEEEccccccccccccc Confidence 1111111111111100000 0000 0 00000001123344567777777777776531 10 0 01 Q ss_pred H-HHHHHHHH--hc---CHHHHHHHHHHHHHhCCeEEEEEEeCCC-CceEEEEEccceeEEEEcCCCCCceEEEEEEEee Q lcl|Aclame:pro 107 L-TKLLNDLL--GE---EFDDTITELYLNASNKGVEWLHPYINRK-GEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYI 179 (479) Q Consensus 107 ~-~~~~~~~~--~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~-~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~ 179 (479) . ..+...+. -| ....+...++..++..|.+|++...+.. |++ ..+.|... T Consensus 72 ~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~--~~l~~~~~--------------------- 128 (378) T protein:vir:16 72 AGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGEL--LDLLFADD--------------------- 128 (378) T ss_pred ccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceE--EEEEecCC--------------------- Confidence 1 12222232 12 2445666788889999999987544321 222 11111100 Q ss_pred ecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHH Q lcl|Aclame:pro 180 EDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYK 259 (479) Q Consensus 180 ~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~ 259 (479) . ..|..+.+.++ ++...+......+. T Consensus 129 -----~-----~~~~~~diih~--------------------------------------------r~~~~~~~~~s~l~ 154 (378) T protein:vir:16 129 -----K-----KEYKPEELVRL--------------------------------------------TSPFYINEDTSILD 154 (378) T ss_pred -----e-----eEecccceEEe--------------------------------------------cCccCccchhHHHH Confidence 0 00112222222 21111112222333 Q ss_pred HHHHHHHHHHHHHHHHHHHhccc--eeeeecCCccc-hhh----HHHHh-------hcccceecCCCCcceeeecCCCHH Q lcl|Aclame:pro 260 SLIDIYDNNISTLADNLDEIQEV--IYVLKEYPGTS-LQE----FIDNI-------RYYKSIKVDGGGGVDKLEINIPVE 325 (479) Q Consensus 260 ~lid~~~~~~s~~~~~~~~~~~p--~l~~~g~~~~~-~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 325 (479) .+.+.++..++ .+.+ ++...+..... .++ +.... ..++++.++++.+++.+..+.... T Consensus 155 ~~~~~i~~~~~--------~~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~ 226 (378) T protein:vir:16 155 NALASIQTKLE--------QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVL 226 (378) T ss_pred HHHHHHHHHHh--------cCccceeeEeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhh Confidence 34444433222 1222 22222221111 111 11111 123456677666666655444333 Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------- Q lcl|Aclame:pro 326 AKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGN------- 398 (479) Q Consensus 326 ~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~------- 398 (479) .+ ...+.+++.|+..-++|+.-.. |..+... ....+...|.-.++.|...+...-- T Consensus 227 ~~-~~~~~~~~~Ia~~fgVPp~~l~--g~~~e~~--------------~~~f~~~tl~P~~~~ie~~l~~kLl~~~e~~~ 289 (378) T protein:vir:16 227 NK-DEIDLIKSELLTGYFMNENILL--GTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRV 289 (378) T ss_pred hH-HHHHHHHHHHHHHhCCCHHHhc--CCchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhhhhh Confidence 33 3456677777777677653321 1111111 1122333444444444333322110 Q ss_pred --CccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHH-----HHHHHHHHHHHHHHhhhhc Q lcl|Aclame:pro 399 --KSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDVN-----DELERLKKQEDTQKEYDDL 467 (479) Q Consensus 399 --~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~~-----~El~~i~~E~~~~~~~~~~ 467 (479) .......+.+.+...+..|..+.++.+.++ .|+++.-.++++++.- ++-+ .-+..+..- .... T Consensus 290 ~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~------~~~~ 363 (378) T protein:vir:16 290 VKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNL------SDLQ 363 (378) T ss_pred hhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeeccccccccch------hhhc Confidence 011122455666777788999999988876 5789999998887542 2111 011111110 0011 Q ss_pred cCCCCCCCcCCC Q lcl|Aclame:pro 468 IPNNQDGVIDET 479 (479) Q Consensus 468 ~~~~~~~~~det 479 (479) ....++..+||+ T Consensus 364 ~~~~~~~~~~e~ 375 (378) T protein:vir:16 364 GSRKDVTSTDET 375 (378) T ss_pred CccCCCCCCCCC Confidence 112222334444 No 273 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=37.42 E-value=1.1 Score=20.32 Aligned_cols=324 Identities=13% Similarity=0.056 Sum_probs=128.2 Q ss_pred HHHHHHHHHHhccCCcccccccccccccccccccccCccee--ecchHHHHHHHHHhhhhccCeeec---CCc---h--- Q lcl|Aclame:pro 37 PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA--INNYHKLLVDQKVGYSVGNPIVFN---ADD---D--- 105 (479) Q Consensus 37 ~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri--~~n~~~~iv~~~a~~l~g~~~~~~---~~~---~--- 105 (479) ..-......+-.+... ... .... ......+ ........|+.+|+-+..-|+++- ..+ + T Consensus 1 Mg~f~~~~~f~~~~~~--~~~-------~~~~--~~~~~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~~~~~~~ 69 (378) T protein:vir:93 1 MNLFGKVVSFSRGKLN--NDT-------QRVT--AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) T ss_pred CccchhhhhhhccccC--CCc-------ceee--ecccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEccccccccccc Confidence 1111111110000000 000 0000 0000001 112344557777777777787541 110 0 Q ss_pred --hHHHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCC-CCceEEEEEccceeEEEEcCCCCCceEEEEEEE Q lcl|Aclame:pro 106 --NLTKLLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINR-KGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFY 177 (479) Q Consensus 106 --~~~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~-~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~ 177 (479) ....+...+. -|. ...+...++...+.+|.+|+++..+. .|++. .+-|. T Consensus 70 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~--~l~~~--------------------- 126 (378) T protein:vir:93 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELL--DLLFA--------------------- 126 (378) T ss_pred ccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEE--EEEec--------------------- Confidence 0112222232 132 34556678889999999998654432 23221 11010 Q ss_pred eeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHH Q lcl|Aclame:pro 178 YIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTF 257 (479) Q Consensus 178 ~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~ 257 (479) ..+ ..|..+.+.+ +++.-.+...... T Consensus 127 ----~~~------~~~~~~diih--------------------------------------------~r~~~~~~~~~s~ 152 (378) T protein:vir:93 127 ----DDK------KEYKTEELVR--------------------------------------------LTSPFYINEDTSI 152 (378) T ss_pred ----CCe------eEeccceeEE--------------------------------------------ecCccccchhhHH Confidence 000 0011122222 1111111111222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccceeee--ecCCccc-hhh----HHHHh-------hcccceecCCCCcceeeecCCC Q lcl|Aclame:pro 258 YKSLIDIYDNNISTLADNLDEIQEVIYVL--KEYPGTS-LQE----FIDNI-------RYYKSIKVDGGGGVDKLEINIP 323 (479) Q Consensus 258 v~~lid~~~~~~s~~~~~~~~~~~p~l~~--~g~~~~~-~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 323 (479) +..+...++... . .+.+-.++ .+.-... .+. +.... ..++++.++++.+++.+..+.. T Consensus 153 l~~~~~~i~~~~-------~-~~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~ 224 (378) T protein:vir:93 153 LDNALASIQTKL-------E-QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYS 224 (378) T ss_pred HHHHHHHHHHHH-------h-cCcccceeeeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChh Confidence 333333333221 1 12222232 2221111 111 11111 1234566666666665554443 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----- Q lcl|Aclame:pro 324 VEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGN----- 398 (479) Q Consensus 324 ~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~----- 398 (479) ...+ +..+.+.+.|+..-++|+.-.. |..| + . .....+...|.-.++.+...+...-- T Consensus 225 ~~~~-~~~~~~~~~Ia~~fgVPp~~l~--g~~~-e---~----------~~~~f~~~tl~P~~~~ie~~l~~kLl~~~er 287 (378) T protein:vir:93 225 VLNK-DEIDLIKSELLTGYFMNENILL--GTAT-Q---E----------QQIYFYNSTIIPLLIQLEKELTYKLISTNRR 287 (378) T ss_pred hhhH-HHHHHHHHHHHHHhCCCHHHhc--CCcH-H---H----------HHHHHHHHHHHHHHHHHHHHHHhhcCChhHh Confidence 3333 4456677778777777653321 2111 1 0 01123334444444444433332110 Q ss_pred ----CccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHH-----HHHHHHHHHHHHHhhh Q lcl|Aclame:pro 399 ----KSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVND-----ELERLKKQEDTQKEYD 465 (479) Q Consensus 399 ----~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~~--d~~~-----El~~i~~E~~~~~~~~ 465 (479) .......+.+.+...+..|..+.++++.++ .|+++.-.++++++.-. +.+. -+..+..- .. T Consensus 288 ~~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~------~~ 361 (378) T protein:vir:93 288 RVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNL------SD 361 (378) T ss_pred hhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccccccccch------hh Confidence 011122355666777788999999998886 57899999988875432 1110 11111100 00 Q ss_pred hccCCCCCCCcCCC Q lcl|Aclame:pro 466 DLIPNNQDGVIDET 479 (479) Q Consensus 466 ~~~~~~~~~~~det 479 (479) .......++.+||+ T Consensus 362 ~~~~~~~~~~~~e~ 375 (378) T protein:vir:93 362 LQGSRKDVTSTDET 375 (378) T ss_pred hcCccCCCCCCCCC Confidence 11112223344444 No 274 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=37.10 E-value=1.1 Score=20.28 Aligned_cols=409 Identities=12% Similarity=0.087 Sum_probs=156.9 Q ss_pred CCCcccCcHHHHH-------------------------------------HHHhccChHHHHHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 1 MLNIYISETDLIK-------------------------------------VQLKKESTINLVKVIEHYILKHRPEKYKQG 43 (479) Q Consensus 1 ~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 43 (479) |-.---.+..... .......+....+ ...+|+.+ T Consensus 1 ~~~w~~~de~~~~~~~~~~~~S~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~e---------LI~~YR~m 71 (511) T protein:vir:56 1 MKFWTKEEEQDIQKIEKNPVRSFSAPDNVDGAKEIHTNLLAPQLGHAIIPSDAQSEGTIPVKE---------LIKSYRAL 71 (511) T ss_pred CCCccchhhhhhhhhccCCcccccCCCCCCCceEEecccccceecceeccccccccCccchHH---------HHHHHHHH Confidence 0000000000000 0000000000011 12234433 Q ss_pred HHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHH-HhhhhccCeeecCCchhHHH----HH----HHH Q lcl|Aclame:pro 44 EEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQK-VGYSVGNPIVFNADDDNLTK----LL----NDL 114 (479) Q Consensus 44 ~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~-a~~l~g~~~~~~~~~~~~~~----~~----~~~ 114 (479) -.+++-.. =...||+.. +.--..+|+.+..++.++.+ .+ +.+ T Consensus 72 a~~pEvd~-----------------------------Av~eIvne~iv~d~~~~pV~l~ld~~~~s~~iK~kI~eeF~~I 122 (511) T protein:vir:56 72 AEYHEVDD-----------------------------AIQEIVDEAIVYENDKEVVWLNLDNTDFSENIKAKINEEFDRV 122 (511) T ss_pred hhccchhh-----------------------------HHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHH Confidence 33333211 111122211 11123345555444332221 11 112 Q ss_pred H-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCC-CceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEE Q lcl|Aclame:pro 115 L-GEEFDDTITELYLNASNKGVEWLHPYINRK-GEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEY 192 (479) Q Consensus 115 ~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~-~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 192 (479) . -=+|+....+..+.+.+.|+.|...-.|++ |-..+..+||+.+-.+..-.. +..-.+... +.+.-+-+ T Consensus 123 l~ll~F~~~~~~~fR~WYVDgRi~fHkiid~k~GI~eLr~lDPr~i~~vr~i~~--~~~~~~~v~-------~~~~ey~~ 193 (511) T protein:vir:56 123 VSLLQMRKHGYKWFRKWYVDSRIYFHKILDKDNNIIELRPLNPMKMELVREIQK--ETIDGVEVV-------KGTLEYYV 193 (511) T ss_pred HHHhccchhhhHHHhhhhhcceEEEEEEeccccceeehhhcCcccchhhhhhhc--ccccccccc-------cceeeeeE Confidence 2 137889999999999999999988877654 555688899998866543211 110000000 01111222 Q ss_pred EeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 193 YTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTL 272 (479) Q Consensus 193 y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~ 272 (479) |.+...... ++.... . .....+..+...+.-...++-.+ ..|+....|-+...+-....| +++-|. T Consensus 194 Y~~~~~~~~-----~~~~~~--~--~~~~~vkI~~daI~y~hSGL~d~----~~~~g~i~syLhkAiKp~NQL-km~EDA 259 (511) T protein:vir:56 194 YKQSDYKMP-----SWMSAT--N--RAQTSFRIPKDAIVFAHSGLMRG----CADDPYIIGYLDRAIKPANQL-KMLEDA 259 (511) T ss_pred ecCCCcccC-----cccccc--c--ccccceeechhheeeecccceec----cCCCCeeeccchhhhHHHHhh-HHHHhh Confidence 322211000 000000 0 00000000000000000000000 012222345555544444444 456777 Q ss_pred HHHHHHhccceeeeecC--CccchhhH---HH----Hhhc--------c--------cce----ec---CCCCcceeeec Q lcl|Aclame:pro 273 ADNLDEIQEVIYVLKEY--PGTSLQEF---ID----NIRY--------Y--------KSI----KV---DGGGGVDKLEI 320 (479) Q Consensus 273 ~~~~~~~~~p~l~~~g~--~~~~~~~~---~~----~~~~--------~--------~~~----~~---~~~~~~~~~~~ 320 (479) +..-+..+.|-.-+.-. +..+.... .. +.+. + ..+ -+ +++.+.+.-+. T Consensus 260 lVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTL 339 (511) T protein:vir:56 260 LVIYRLARAPERRVFYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQVKNTTNAMSMLEDYYLPRREGSKGTEVSTL 339 (511) T ss_pred HHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccchhhhhhHhhhcccccCCCCccceeec Confidence 77778888775533321 11121111 00 1000 0 000 01 12223333333 Q ss_pred CCCH-HHHHHHHHHHHHHHHHHhCCCCC--cccc----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 NIPV-EAKKELLDRLEKNIIIFGQGVNP--ESQN----TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYL 393 (479) Q Consensus 321 ~~~~-~~~~~~~~~l~~~i~~~s~~~~~--~~~~----~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~ 393 (479) +... -+-.+-++-+++-++.--.+|-- ..++ ++---|.+|--.+......+.+.+..|...+.++++.=+-+- T Consensus 340 pGgqnlgem~DV~YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilK 419 (511) T protein:vir:56 340 PGGQSLGDIEDVLYFNRKLYKAMRIPTSRAASEDQTGGINFGQGAEITRDELKFTKFVKRLQTKFETVITDPLKHQLIVN 419 (511) T ss_pred cccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc Confidence 3221 11223334444444544455522 1111 110022334334444555677777778777777776433333 Q ss_pred HhcCCCcccc--ceeeEEeCCCCCCCHHHHHH-------HHHHHh---c-cCChHHHHHhCCCCCC--HHHHHHHHHHHH Q lcl|Aclame:pro 394 KISGNKSYDY--KTVQITFNHSMIINEAEKID-------MAAKST---G-IVSDETIVSNHPWVED--VNDELERLKKQE 458 (479) Q Consensus 394 ~~~~~~~~~~--~~i~i~f~~~~p~d~~e~a~-------~~~k~~---g-~is~et~~~~l~~~~d--~~~El~~i~~E~ 458 (479) ++....+.+. ..+.+.|..--.-.+...++ +++.+. | .+|.+++.+.+=-.+| ..++.++|++|. T Consensus 420 giit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~~yi~k~ILr~tDeei~~~~k~I~~E~ 499 (511) T protein:vir:56 420 NIITEEEWDANHEKLYVVFNQDSYFEEAKELEILNSRMNAMRDIQDYAGKYYSHKYIQKNILRLSDDQITAMQSEIDEEE 499 (511) T ss_pred cCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhcchhccccchHHHHHHHhccCHHHHHHHHHHHHHhh Confidence 3333222222 45777775444333433333 333333 3 4799999987533443 334555565554 Q ss_pred HHHHhhhhccCCCCCCC Q lcl|Aclame:pro 459 DTQKEYDDLIPNNQDGV 475 (479) Q Consensus 459 ~~~~~~~~~~~~~~~~~ 475 (479) .+ ...+..+++- T Consensus 500 k~-----~~~~~~e~~f 511 (511) T protein:vir:56 500 TN-----PRFQQDDQGF 511 (511) T ss_pred cC-----CCCCCcccCC Confidence 32 1111111111 No 275 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=36.94 E-value=1.1 Score=20.26 Aligned_cols=324 Identities=13% Similarity=0.068 Sum_probs=126.4 Q ss_pred HHHHHHHHHHhccCCcccccccccccccccccccccCccee--ecchHHHHHHHHHhhhhccCeeec---CCc---h--- Q lcl|Aclame:pro 37 PEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA--INNYHKLLVDQKVGYSVGNPIVFN---ADD---D--- 105 (479) Q Consensus 37 ~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri--~~n~~~~iv~~~a~~l~g~~~~~~---~~~---~--- 105 (479) ..-....+.+.++.. . .+.... .......+ ........|+.+|+-+..-|+.+- ..+ + T Consensus 1 Mg~f~~~~~~~~~~~--~-------~~~~~~--~~~~~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~~~~~~~~ 69 (378) T protein:vir:94 1 MNLFGKVVSFSRGKL--N-------NDTQRV--TAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) T ss_pred CCccccchhcccccc--c-------CCccee--eeeccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccCccccccc Confidence 000001111111000 0 000000 00000111 113445567777777777786531 111 0 Q ss_pred -hH-HHHHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEE-EeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEE Q lcl|Aclame:pro 106 -NL-TKLLNDLL--GEE---FDDTITELYLNASNKGVEWLHP-YINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFY 177 (479) Q Consensus 106 -~~-~~~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v-~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~ 177 (479) .. ..+...+. -|. ...+...+...++.+|.+|+++ +.+..|++. .+.|.. T Consensus 70 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~--~l~p~~-------------------- 127 (378) T protein:vir:94 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL--DLLFAD-------------------- 127 (378) T ss_pred ccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEE--EEEecC-------------------- Confidence 01 11222222 232 3455567788999999999864 433334321 111100 Q ss_pred eeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecCCCCCCchHHH Q lcl|Aclame:pro 178 YIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTF 257 (479) Q Consensus 178 ~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~ 257 (479) .+. .|.++.+.+++. ++ +...|.|. T Consensus 128 -----~~~------~~~~~diiH~~~--------------------------------~~---------~~~~g~s~--- 152 (378) T protein:vir:94 128 -----DKK------EYKPEELVRLTS--------------------------------PF---------YINEDTSI--- 152 (378) T ss_pred -----Cee------EeeeeeeEEecC--------------------------------cC---------CccchhHH--- Confidence 000 011112222110 00 01123332 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--eeeeecCCccc-hhh----HHHHh-------hcccceecCCCCcceeeecCCC Q lcl|Aclame:pro 258 YKSLIDIYDNNISTLADNLDEIQEV--IYVLKEYPGTS-LQE----FIDNI-------RYYKSIKVDGGGGVDKLEINIP 323 (479) Q Consensus 258 v~~lid~~~~~~s~~~~~~~~~~~p--~l~~~g~~~~~-~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 323 (479) +..+..+++...+. +.+ ++...+..... .+. +.... ..++++.++++.+++.+..+.. T Consensus 153 l~~~~~~i~~~~~~--------~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~ 224 (378) T protein:vir:94 153 LDNALASIQTKLEQ--------GKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYS 224 (378) T ss_pred HHHHHHHHHHHHhc--------ccccceeeeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEEccCChh Confidence 33333333332221 222 22233221111 111 11111 1234566666656555554433 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----- Q lcl|Aclame:pro 324 VEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGN----- 398 (479) Q Consensus 324 ~~~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~----- 398 (479) ...+ ...+.+.+.|+..-++|+.-.. |..|-. . ....+...|.-.++.+...+...-- T Consensus 225 ~~~~-~~~~~~~~~Ia~~fgVP~~~l~--~~~se~----~----------~~~f~~~tL~P~~~~ie~~l~~~Ll~~~er 287 (378) T protein:vir:94 225 VLNK-DEIDLIKSELLTGYFMNENILL--GTASQE----Q----------QIYFYNSTIIPLLIQLEKELTYKLISTNRR 287 (378) T ss_pred hhhH-HHHHHHHHHHHHHhCCCHHHhc--CChHHH----H----------HHHHHHHHHHHHHHHHHHHHHhhcCChhHh Confidence 3333 4456677777777677653321 111111 0 1123333444444433333221110 Q ss_pred ----CccccceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHH-----HHHHHHHHHHHHHhhh Q lcl|Aclame:pro 399 ----KSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWV--EDVND-----ELERLKKQEDTQKEYD 465 (479) Q Consensus 399 ----~~~~~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~~--~d~~~-----El~~i~~E~~~~~~~~ 465 (479) .......+.+.+...+-.|..+.++++.++ .|+++.-.++++++.- ++.+. -+..+... .. T Consensus 288 ~~g~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~------~~ 361 (378) T protein:vir:94 288 RVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNL------SD 361 (378) T ss_pred hhhhhcccccceeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeecccccccccc------hh Confidence 011112355566677778899999998886 5789998888886532 22111 11111100 01 Q ss_pred hccCCCCCCCcCCC Q lcl|Aclame:pro 466 DLIPNNQDGVIDET 479 (479) Q Consensus 466 ~~~~~~~~~~~det 479 (479) .......+..+||+ T Consensus 362 ~~~~~~~~~~~~e~ 375 (378) T protein:vir:94 362 LQGSRKDVTSTDET 375 (378) T ss_pred hcCCcCCCCCCCCC Confidence 11112222334444 No 276 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=33.57 E-value=1.3 Score=19.87 Aligned_cols=397 Identities=11% Similarity=0.089 Sum_probs=156.0 Q ss_pred CCCcccCcHHHHHHH-Hh--ccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCccee Q lcl|Aclame:pro 1 MLNIYISETDLIKVQ-LK--KESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKA 77 (479) Q Consensus 1 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri 77 (479) |-+ +.. .. .... +. .....+-.+ ...+|+.+..+++-.. T Consensus 51 ~~~-~~~-~g-~~~~~y~~~e~~~~~~~e---------LI~~YR~ma~~pEvd~-------------------------- 92 (524) T protein:vir:98 51 LNN-QKY-AG-VFQQFYSGQDPAIQNKEQ---------LINTYRGIMSYPEVEN-------------------------- 92 (524) T ss_pred CCc-cee-cc-eeeeeccccccccchHHH---------HHHHHHHHhhccchhh-------------------------- Confidence 111 110 00 0000 00 000011111 1223444433333211 Q ss_pred ecchHHHHHHHH-HhhhhccCeeecCCchhHHH----HH----HHHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCCC-- Q lcl|Aclame:pro 78 INNYHKLLVDQK-VGYSVGNPIVFNADDDNLTK----LL----NDLL-GEEFDDTITELYLNASNKGVEWLHPYINRK-- 145 (479) Q Consensus 78 ~~n~~~~iv~~~-a~~l~g~~~~~~~~~~~~~~----~~----~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~-- 145 (479) =...||+.. +.--..+|+.+..++.++.+ .+ +.+. -=+|+....+..|.+.+.|+.|...-+|++ T Consensus 93 ---Av~eIVneaIv~~~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~~~ 169 (524) T protein:vir:98 93 ---AVSEIIDDAIVNEQGKDIITMDLAKTNFSKAIQDKIVEEFDNVLNIYDFDNMGARLFRDWYVDSRIYFHKIMHKDES 169 (524) T ss_pred ---HHHhhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceeEEEEEEcCCCC Confidence 111122221 12223445555544433222 12 1122 137889999999999999999998877653 Q ss_pred -CceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccc Q lcl|Aclame:pro 146 -GEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQ 224 (479) Q Consensus 146 -~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (479) |-..+..++|+.+-.+..--.. ....++..+ +.+.-+-+|.+....+ ...+. .... T Consensus 170 kGI~ELr~lDPr~i~~vr~~~~~-~~~~~~~v~-------~~~~e~f~Y~~~~~~~-~~~g~-~~~~------------- 226 (524) T protein:vir:98 170 KGIRELRQLDPRCMELIRESITE-TLDGGVKVF-------RGYREFFVYSAPKAGY-TYNGQ-IYQA------------- 226 (524) T ss_pred cceeeeeeeCCccceeeeecccc-ccccchhhc-------cceeeeeeeccCCCcc-ccccc-eecC------------- Confidence 4456888999988665432111 011111100 0111222333332221 11110 0000 Q ss_pred ccccccccccccccccc---eEEecCC--CCCCchHHHHHHHHHHHH--HHHHHHHHHHHHhccceeeeecC--Cccchh Q lcl|Aclame:pro 225 EGHFRINNKEQGWGKVP---FIPFKNN--EKCVSDLTFYKSLIDIYD--NNISTLADNLDEIQEVIYVLKEY--PGTSLQ 295 (479) Q Consensus 225 ~~~~~~~~~~~~~g~vP---vv~~~n~--~~g~s~~~~v~~lid~~~--~~~s~~~~~~~~~~~p~l~~~g~--~~~~~~ 295 (479) +.--+|| |++.... ..+..++.-+...+..+| +++-|.+..-+..+.|-.-+.-. +..+.. T Consensus 227 ----------~~~ikI~~dAIvy~hSGL~d~~~~iisyLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~ 296 (524) T protein:vir:98 227 ----------NQKIKIPRSAIVYAHSGLEDCSNNIIGYLHRAVKPANQLRLLEDAMVIYRITRAPERRVFYIDVGQMGGN 296 (524) T ss_pred ----------CCceeechhheeeeccCcccCCCCeeeehhHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCch Confidence 0000111 1111000 011112222333344444 45677777778888876543321 222211 Q ss_pred hH---H----HHhhc--------c--------cce----ec---CCCCcceeeecCCCH-HHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 296 EF---I----DNIRY--------Y--------KSI----KV---DGGGGVDKLEINIPV-EAKKELLDRLEKNIIIFGQG 344 (479) Q Consensus 296 ~~---~----~~~~~--------~--------~~~----~~---~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~s~~ 344 (479) .. . .+.+. | ..+ -+ +++.+.+.-+.+... -+-.+-+.-+++-++.--.+ T Consensus 297 KAeqYl~~im~k~kNklvYDa~TGevrddrk~msMlEDyWLpRReGgrgTEItTLpggqnlgem~DV~YF~kkLy~aLnV 376 (524) T protein:vir:98 297 KATQYVNNIAQGLKNRVVYDARTGTVKNQQNNLSMTEDYWLMRRDGKAITEVSTLPGGQNFSDMDDIKWFNRKLYEALRV 376 (524) T ss_pred hHHHHHHHHHHhcCceeEeeccCceeeccccccchhhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCC Confidence 11 1 11110 0 000 01 122233333333221 11222333444444444454 Q ss_pred CC--Cccc----ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--ccceeeEEeCCCCCC Q lcl|Aclame:pro 345 VN--PESQ----NTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSY--DYKTVQITFNHSMII 416 (479) Q Consensus 345 ~~--~~~~----~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~--~~~~i~i~f~~~~p~ 416 (479) |- +..+ .+|. +.+|--.+......+.+.+..|...+.++++.=+-+-++....+. -...+.+.|..--.- T Consensus 377 P~sRl~~~~~~f~~Gr--~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f 454 (524) T protein:vir:98 377 PLSRMPRDDGGMQIGG--GGEITRDELKFSKFIRTLQIQFSPVLSDPLKTNLIAKKIITEDEWEENVSKISFVFQQDSYY 454 (524) T ss_pred CceeccCCCCcccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchH Confidence 42 2111 1232 223333333445556777777777777776543322233222111 123567777544333 Q ss_pred CHHHHHH-------HHHHHh---c-cCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 417 NEAEKID-------MAAKST---G-IVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 417 d~~e~a~-------~~~k~~---g-~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) .+...++ +++.+. | .+|.+++.+.+=-.+| ..++.++|++|. .+....+.+...+|= T Consensus 455 ~ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi~k~ILr~tDeei~~~~k~I~~E~------k~~~~~~p~~e~~~f 524 (524) T protein:vir:98 455 AEVKDIEILERRLNLMSQVEGVVGKYVSHKYIMKEILRMSDEDIDEQAKLIEEES------KEERFKNPEAEEENF 524 (524) T ss_pred HHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHhccCHHHHHHHHHHHHHHH------hCCCCcCCccccccC Confidence 3333333 333333 4 6999999988544453 223333343332 222233332222222 No 277 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=31.03 E-value=1.5 Score=19.57 Aligned_cols=402 Identities=11% Similarity=0.091 Sum_probs=156.4 Q ss_pred CCCccc---------------------------------------CcHHHHHHHHhccChHHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 1 MLNIYI---------------------------------------SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYK 41 (479) Q Consensus 1 ~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 41 (479) |+.-+- -+.+.+...+-......+. ...+...+|+ T Consensus 7 ~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~~dGa~~I~~~~~~~~~~~~~q~~y~~~e~~~~------~~~eLI~~YR 80 (524) T protein:vir:10 7 ILSFLKPWANEDEKEYKQQINNNLESVTAPKLDDGAREIETQEQNIPYNALMQQMFGSNEPEVK------NTRELIDTYR 80 (524) T ss_pred HHHHhhhhhcchhhhhhhhhccCCCccccCCCCCCceeeccCcccccchhhhhhhhhcccchhh------hHHHHHHHHH Confidence 222110 0111111100000000000 0111223343 Q ss_pred HHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHH-HhhhhccCeeecCCchhHHH----HH----H Q lcl|Aclame:pro 42 QGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQK-VGYSVGNPIVFNADDDNLTK----LL----N 112 (479) Q Consensus 42 ~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~-a~~l~g~~~~~~~~~~~~~~----~~----~ 112 (479) .+..+++-.. =...||+.. +.--..+|+.+..++.++.+ .+ + T Consensus 81 ~ma~~pEvd~-----------------------------Av~eIVneaiv~d~~~~pV~l~Ld~~~~s~siK~kI~eeF~ 131 (524) T protein:vir:10 81 NLMNNYEVDN-----------------------------AVQEIVSDAIVYEDDKEVVALNLDGTDFSQSIKDKILAEFS 131 (524) T ss_pred HHhhccchhh-----------------------------HHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHH Confidence 3333332111 111122221 11123445555544433222 12 2 Q ss_pred HHH-hcCHHHHHHHHHHHHHhCCeEEEEEEeCC----CCceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceE Q lcl|Aclame:pro 113 DLL-GEEFDDTITELYLNASNKGVEWLHPYINR----KGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKI 187 (479) Q Consensus 113 ~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~----~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~ 187 (479) .+. -=+|+....+..|.+.+.|+.|...-+|. +|-..+..++|+.+-.+..-.. +...++..+ +.+ T Consensus 132 ~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~~~pk~GI~Elr~lDPr~i~~vr~i~~--~~~~~~~vi-------~~~ 202 (524) T protein:vir:10 132 EVLNLLNFQRKGTDHFQRWYVDSRIFFHKIINPKKMKDGVQELRRLDPRQVQYIREIVT--RMEDGVKIV-------DGY 202 (524) T ss_pred HHHHHhccchhhhHHHhhheeeceEEEEEEeeCCCccccceeeeeeCCccceeeeeecc--cCcccchhh-------cch Confidence 122 13788999999999999999999887763 3556788999988755432111 110001000 001 Q ss_pred EEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccc---eEEecC---CCCCCchHHHHHHH Q lcl|Aclame:pro 188 KRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVP---FIPFKN---NEKCVSDLTFYKSL 261 (479) Q Consensus 188 ~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vP---vv~~~n---~~~g~s~~~~v~~l 261 (479) ..+-+|.++.- .|...+..+. ++.--+|| |++... +..|.-.+.-+... T Consensus 203 ~e~f~Y~~~~~-~~~~~~~~~~------------------------~~~~ikI~~dAIvy~~SGL~d~~~~~i~syLhkA 257 (524) T protein:vir:10 203 REFFVYDTGHE-SYCADGRIYS------------------------AGTKVKIPRAAVVYAHSGLLDCCGKNIIGYLQRA 257 (524) T ss_pred hhheeecCCCc-ccccCcceec------------------------CCcceecchhheeeeccCcccCCCCceeccchHh Confidence 11122222111 1111110000 00000111 111110 00111122223333 Q ss_pred HHHHH--HHHHHHHHHHHHhccceeeeecC--CccchhhH---HH----Hhhc--------c--------cce----ec- Q lcl|Aclame:pro 262 IDIYD--NNISTLADNLDEIQEVIYVLKEY--PGTSLQEF---ID----NIRY--------Y--------KSI----KV- 309 (479) Q Consensus 262 id~~~--~~~s~~~~~~~~~~~p~l~~~g~--~~~~~~~~---~~----~~~~--------~--------~~~----~~- 309 (479) +..+| +++-|.+..-+..+.|-.-+.-. +..+.... .. +.+. | ..+ -+ T Consensus 258 iKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnlPk~KAeqYl~~im~k~kNKlvYDa~TGev~ddrk~msMlEDyWLp 337 (524) T protein:vir:10 258 IKPANQLKLMEDAMVIYRITRAPDRRVFYIDTGNMPSRKAAAQMQHIMNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQ 337 (524) T ss_pred hHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeccCCeeccchhhhhhHhhhccc Confidence 44444 45677777778888776543321 11221111 11 1111 0 000 01 Q ss_pred --CCCCcceeeecCCCH-HHHHHHHHHHHHHHHHHhCCCCCcc--c-----ccccccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 310 --DGGGGVDKLEINIPV-EAKKELLDRLEKNIIIFGQGVNPES--Q-----NTGDKSGVALKFLYSLLDLKCSKTEKKFK 379 (479) Q Consensus 310 --~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~s~~~~~~~--~-----~~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~ 379 (479) +++.+.+.-+.+... -+..+-+.-+++-++.--.+|---. + .+| -+.+|--.+......+.+.+..|. T Consensus 338 RReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~f~~g--r~~EItRDEiKF~KFI~rLR~rFs 415 (524) T protein:vir:10 338 RRDGKAVTEVDTMPGATGMSDMDDVLYFRTALYRALRIPESRIPSESNSGVMFD--AGTAITRDELKFAKWIRQLQNKFE 415 (524) T ss_pred ccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCchhccCCCCcccccc--ccchhhHHHHHHHHHHHHHHHHHH Confidence 122233333333221 1122333444444444445552211 1 122 222333333444555777777777 Q ss_pred HHHHHHHHHHHHHHHhcCCCcccc--ceeeEEeCCCCCCCHHHHHH-------HHHHHh---c-cCChHHHHHhCCCCCC Q lcl|Aclame:pro 380 KAIRELLWFVCEYLKISGNKSYDY--KTVQITFNHSMIINEAEKID-------MAAKST---G-IVSDETIVSNHPWVED 446 (479) Q Consensus 380 ~~l~~~~~li~~~~~~~~~~~~~~--~~i~i~f~~~~p~d~~e~a~-------~~~k~~---g-~is~et~~~~l~~~~d 446 (479) ..+.++++.=+-+-++....+.+. ..+.+.|..--.-.+...++ +++.+. | .+|.+++.+.+=-.+| T Consensus 416 ~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tD 495 (524) T protein:vir:10 416 EIFLDPLKTNLILKKIITEDEWEREINNIKVTFNRDSYFSEMKDAEIMERRINMLTMAEPFIGKYISHQTAMKDFLQMTD 495 (524) T ss_pred HHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCH Confidence 777777764333333333222222 45777775444433443333 333333 3 4799999987533443 Q ss_pred --HHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 447 --VNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 447 --~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) ..++-++|++|.. +....+.++..+|= T Consensus 496 eei~~~~k~I~~E~k------~~~~~~~~~~~~~f 524 (524) T protein:vir:10 496 EEINQEAKQIEEESK------EARFQNPDEEEEDF 524 (524) T ss_pred HHHHHHHHHHHHHhh------cCCCCCCChhhhcC Confidence 3344455554432 22222332222333 No 278 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=28.31 E-value=1.8 Score=19.24 Aligned_cols=196 Identities=11% Similarity=0.031 Sum_probs=72.1 Q ss_pred EEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEEecC-----C Q lcl|Aclame:pro 174 IRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN-----N 248 (479) Q Consensus 174 i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~ 248 (479) +|.- .+|. +.+..... .+ ...+... ....+. |+++++ . T Consensus 1 ~r~~----~dg~-~~y~~~~~-----~~--~~~g~~~----------------~~~~~e---------ilH~r~~~~~~~ 43 (219) T protein:vir:98 1 MRVC----KDGN-YKYLMKKS-----LY--DTKSEIY----------------EYNKND---------VIFIKLYDPMQQ 43 (219) T ss_pred Ccee----ecCe-EEEEEecc-----ee--cCCceeE----------------Eecccc---------EEEecCCCCCCC Confidence 2111 1121 11110000 00 0000000 000011 122221 1 Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccchhhH----HHHhhc------ccc-eecCC---CCc Q lcl|Aclame:pro 249 EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEF----IDNIRY------YKS-IKVDG---GGG 314 (479) Q Consensus 249 ~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~~~~~~~~~----~~~~~~------~~~-~~~~~---~~~ 314 (479) ..|.|.+......+..-.....-...-++-.+.|-.++.--+....++. ...+.. .+. +.+.. ..+ T Consensus 44 ~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~~g~~n~~~~~l~~~gg~~~G 123 (219) T protein:vir:98 44 VYGSPDYVGGITSALLNSDATIFRRRYYSNGAHMGFILYSTDPDMTEEMEDEIAERIRDSKGVGNFRSMFVNIAGGHPDG 123 (219) T ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCCHHHHHHHHHHHHHhcCcccccceeEecCCCCccc Confidence 2477776665544443222222222334556667665532111122221 111111 111 22211 234 Q ss_pred ceeeecCCC--HHHHHHHHHHHHHHHHHHhCCCCCccccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 VDKLEINIP--VEAKKELLDRLEKNIIIFGQGVNPESQNT--GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVC 390 (479) Q Consensus 315 ~~~~~~~~~--~~~~~~~~~~l~~~i~~~s~~~~~~~~~~--g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 390 (479) ++|.....+ ...+.+..+..+..|...-.+|+.-.+.. +..++..++.... ..+...|.-.+..|. T Consensus 124 ~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVPp~~lG~~~~~~~~~sn~eq~~~----------~f~~~tL~P~~~~ie 193 (219) T protein:vir:98 124 LKVIPIGDTGQKDEFANIKNISAQDVLTSHRFPPGLSGIIPVNTAGLGDPLKIRE----------AYQADEVLPLQEIIA 193 (219) T ss_pred eeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcccccCCCCCccCHHHHHH----------HHHHHHHHHHHHHHH Confidence 555544433 34566666667778888878887654422 1222221211111 111222222222222 Q ss_pred HHHHhcCCCccccceeeEEeCCCCCCCHH Q lcl|Aclame:pro 391 EYLKISGNKSYDYKTVQITFNHSMIINEA 419 (479) Q Consensus 391 ~~~~~~~~~~~~~~~i~i~f~~~~p~d~~ 419 (479) ..++.... -...+.+.|....+.|.. T Consensus 194 ~~ln~~~~---~~~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 194 ESINSDYE---IKSALKVNFKQPEKRDKN 219 (219) T ss_pred HHhhhhhc---CCCccEEeecCcccccCC Confidence 22221101 112457888888888777 No 279 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=24.57 E-value=2.2 Score=18.75 Aligned_cols=371 Identities=9% Similarity=-0.061 Sum_probs=91.2 Q ss_pred ccccc-cCcceeecchHHHHHHHHHhhhhccCeeecCCchhHHHHHHHHHhcCHHHHHHHHH---------HHHHhCCeE Q lcl|Aclame:pro 67 VDDFT-KVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELY---------LNASNKGVE 136 (479) Q Consensus 67 ~~~~~-~~~~ri~~n~~~~iv~~~a~~l~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~---------~~~~~~G~~ 136 (479) .-++. ....| .+.+++|.-.+.++......+..-+. +. .-+.+.+....++. ..+..-... T Consensus 1 ~l~~~~~~~~~---~~~~~~v~n~~~~ivd~~~~~l~~~g-f~-----~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i 71 (434) T protein:vir:98 1 MLPKNAEQAFL---DFQRKARTNFCGLIANASVHRLLALG-VT-----GPDGEPDTRASRWWQANRLDSRQKLVWRMAMA 71 (434) T ss_pred CCCCCccHHHH---HhhhhhhccchHHHHHHHHhhhccCc-ee-----cCCCchHHHHHHHHHhcChhHHHHHHHHHHhh Confidence 00000 00000 11111121222222111100000000 00 00001111111111 011111100 Q ss_pred EEEEEeCCCCceE-EEEEccce---------eEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCC---cEEEEEE Q lcl|Aclame:pro 137 WLHPYINRKGEFK-YVIIPAEE---------AIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTEN---DITYFIE 203 (479) Q Consensus 137 ~~~v~~d~~~~~~-i~~~~p~~---------~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~---~i~~~~~ 203 (479) | |+-. +.+.++.. .+-+.++. ... + .|. +..+.....+.+|..+ ..+.... T Consensus 72 ~--------G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~---~~~--~-i~D--~~~~~~~~ai~~~~~~~~~~~~~~~~ 135 (434) T protein:vir:98 72 Q--------SAGYMLVGAHPTRTEDNGRPSPLITMEHPS---ECI--V-EYD--PETGEPLVGLKVWHNDIDGFGYARVF 135 (434) T ss_pred c--------CceEEEEecCCCcccccCCceeEEEEeccc---eeE--E-EEe--CCCCceEEEEEEEEeccCCceEEEEE Confidence 0 1111 11111111 01112221 111 1 121 1112222233333211 1111000 Q ss_pred cCC-ccccccccccccccccccccccccccccc-cccccceEEecCCCCCC----chHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 204 RGN-SFIQEFLYDEYGKMTDIQEGHFRINNKEQ-GWGKVPFIPFKNNEKCV----SDLTFYKSLIDIYDNNISTLADNLD 277 (479) Q Consensus 204 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~vPvv~~~n~~~g~----s~~~~v~~lid~~~~~~s~~~~~~~ 277 (479) -.+ ....................+......++ ....+..|++..=.... --..++.++++-++.....+++... T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~~g~sd~e~vi~liDa~~~~~s~~~~ 215 (434) T protein:vir:98 136 FDDTSFPYRTRERTGARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGEDPEPEFAGVLDIQDRVNLGILNRMA 215 (434) T ss_pred EeCcEEEEEEeeccccccccccccceecccccccccCCCCccceEEeccCCCcCcCCcchhhhHHHHHHHHHHHHHHHHH Confidence 000 00000000000000000000100000000 00111222221111110 1135688888888888888887777 Q ss_pred HhccceeeeecCCccchhhHHHHhhcccce--ecCCCCcceeeecCCCHH--H-HHHHHHHHHHHHHHHhCCCCCccc-c Q lcl|Aclame:pro 278 EIQEVIYVLKEYPGTSLQEFIDNIRYYKSI--KVDGGGGVDKLEINIPVE--A-KKELLDRLEKNIIIFGQGVNPESQ-N 351 (479) Q Consensus 278 ~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~~i~~~s~~~~~~~~-~ 351 (479) ...+-.....-..|....++.......... ......+.-+...+.... . -...++.+.+.+...........+ . T Consensus 216 ~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p 295 (434) T protein:vir:98 216 ASRFSGFRQKWIKGHKFAKRTDPATGMTVVDQPFVPSPSAVWASEGENTQFGQLDATDLSGFLKEHASDVRDMLTISQTP 295 (434) T ss_pred HHHHhcchhhhhcCCCcccccccccccchhhhhhhccccccccCCCCCceEEEecCcchHHHHHHHHHHHHHHhcccCCC Confidence 766665555555554444333221111000 000111111111111111 1 122344444444444332211111 1 Q ss_pred cccccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeCCC----CCCCHHHHHHH Q lcl|Aclame:pro 352 TGDKSGV---ALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHS----MIINEAEKIDM 424 (479) Q Consensus 352 ~g~~Sg~---Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~----~p~d~~e~a~~ 424 (479) ....++. +-.............+.......+.+.++-+++++. .. ......+.+. .+......++. T Consensus 296 ~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~---~~----~g~~~~~~~~~v~w~~~~~~s~~~~ 368 (434) T protein:vir:98 296 TYLYATDLVNISADTIGALDILHVAKVREHIASFSEGLESVLALAA---AQ----AGVPEDYTEAEVRWANPAHVTMAVK 368 (434) T ss_pred HHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh----cCCChhheeeeEEecCCCCCCHHHH Confidence 1111111 111222222233334444444555555555454432 11 1111111000 00000001111 Q ss_pred HHHHhccCChHHHHHhCCCCCCHHHHH-HHH---HHHHH---HHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 425 AAKSTGIVSDETIVSNHPWVEDVNDEL-ERL---KKQED---TQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 425 ~~k~~g~is~et~~~~l~~~~d~~~El-~~i---~~E~~---~~~~~~~~~~~~~~~~~det 479 (479) +. .++ .+...+ +. .+.+ +.+ .+|.+ ++...+............++ T Consensus 369 ad----a~~---kl~~~g-~~--~e~~~~~lg~~~~e~~r~~~e~~~~~~~~~~~~~~~~~~ 420 (434) T protein:vir:98 369 AD----AAT---KLKSIG-YP--LDVIAEELDESPARVRRIVAGAASQALLAASLLPAPGAP 420 (434) T ss_pred HH----HHH---HHHhcC-Cc--HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC Confidence 11 111 111122 22 2222 221 22221 12222222222222222233 No 280 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=22.80 E-value=2.4 Score=18.50 Aligned_cols=359 Identities=11% Similarity=-0.034 Sum_probs=126.1 Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHH Q lcl|Aclame:pro 9 TDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQ 88 (479) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~ 88 (479) |..+ ..+..++........ ..+ .........-+...-....|+. T Consensus 1 Mgl~-------------------------------d~~~~~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~v~~~i~~ 44 (395) T protein:vir:96 1 MGIL-------------------------------DFFSFKKSGTLSDDD--SGS---TTSEKLTNVVLKEDALYKCVNY 44 (395) T ss_pred Ccch-------------------------------hhhcCCCCccccccc--ccc---chhhhcchhhhhhHHHHHHHHH Confidence 1111 111111111100000 000 0000000000112334456777 Q ss_pred HHhhhhccCeeecCCchh--HHH-HHHHHH--hcC---HHHHHHHHHHHHHhCCeEEEEEEeCCCCceEEEEEccceeEE Q lcl|Aclame:pro 89 KVGYSVGNPIVFNADDDN--LTK-LLNDLL--GEE---FDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIP 160 (479) Q Consensus 89 ~a~~l~g~~~~~~~~~~~--~~~-~~~~~~--~n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~ 160 (479) +|+-+..-|+.+-..+.. ... +...+. -|. .......++..++.+|.+|+.+..+..+.+ +..... T Consensus 45 Ia~~ia~lp~~v~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~~~------~~~~~~ 118 (395) T protein:vir:96 45 LARIISKSTFRIKAPEKLTENQKDWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGIYV------ADAFTQ 118 (395) T ss_pred HHHhhccceeEEEeCCccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCceec------CCcccc Confidence 887777778775332211 111 222221 132 344556778888899999988876532111 111100 Q ss_pred EEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccccccccccccccccccccc Q lcl|Aclame:pro 161 IWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKV 240 (479) Q Consensus 161 ~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 240 (479) .+. -.. .+++.+. .++ +..-..+.++.+.+++.... T Consensus 119 ~~~-~~~------~~~~~v~-~~~--~~~~~~~~~~dvih~k~~~~---------------------------------- 154 (395) T protein:vir:96 119 DKK-LSG------NKFKVSR-VQG--QTYEKIFTFDQVIYLKNDNS---------------------------------- 154 (395) T ss_pred ccc-ccc------ceeeeee-ecc--ceeeeEeccCceEEecccCC---------------------------------- Confidence 000 000 0011100 001 11111233333333321100 Q ss_pred ceEEecCCCCCCch---HHHHHHHHHHHHHHH---HHHHHHHHHhccceeeeecCCccchhhHH---H----Hhhccc-- Q lcl|Aclame:pro 241 PFIPFKNNEKCVSD---LTFYKSLIDIYDNNI---STLADNLDEIQEVIYVLKEYPGTSLQEFI---D----NIRYYK-- 305 (479) Q Consensus 241 Pvv~~~n~~~g~s~---~~~v~~lid~~~~~~---s~~~~~~~~~~~p~l~~~g~~~~~~~~~~---~----~~~~~~-- 305 (479) +. ...+.+. ...++.+..++.... ....+.......|..+....+....+... . ....+. T Consensus 155 ~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (395) T protein:vir:96 155 DL-----MLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGRQPKSDKDFFKRTIEKIRTESVV 229 (395) T ss_pred cc-----ccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCchhhHHHHHHHHHHHHHHhhcCCcc Confidence 00 0011121 222322222221111 11112222222222222211111111111 1 111122 Q ss_pred ceecCCCCcceeeecCCCHH------HHHHHHHHHHHHHHHHhCCCCCccccccccc-HHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 306 SIKVDGGGGVDKLEINIPVE------AKKELLDRLEKNIIIFGQGVNPESQNTGDKS-GVALKFLYSLLDLKCSKTEKKF 378 (479) Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~i~~~s~~~~~~~~~~g~~S-g~Ai~~~~~~l~~k~~~~~~~~ 378 (479) ++.++++.+.+.++...... .+........+.|...-++|+.-.+ ++-| .+.. ....+ T Consensus 230 v~~l~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~--~~~sn~e~~-------------~~~f~ 294 (395) T protein:vir:96 230 GIPVTANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH--GDIADNQKN-------------YELLL 294 (395) T ss_pred eEEccCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc--CCCccHHHH-------------HHHHH Confidence 23344444444333322111 2222233344556666666655432 2111 1111 11222 Q ss_pred HHHHHHHHHHHHHHHHhcCCCccc-cceeeEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHH-HHH Q lcl|Aclame:pro 379 KKAIRELLWFVCEYLKISGNKSYD-YKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVND-ELE 452 (479) Q Consensus 379 ~~~l~~~~~li~~~~~~~~~~~~~-~~~i~i~f~~~~p~d~~e~a~~~~k~--~g~is~et~~~~l~~--~~d~~~-El~ 452 (479) ...|.-.++.+...+...--...+ ...+.+.|...+..|..+.++++.++ .|+++.-.++++++. ++++.. ++ T Consensus 295 ~~~L~P~~~~ie~~l~~~Ll~~~e~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~~~~gD~~- 373 (395) T protein:vir:96 295 EGPIESLITNIVDGLEYAIFDKSETLEGSFIKVTGLKNYDLFSISSQADKLISSGFVFIDEVREEIGLPELPDGLGKVL- 373 (395) T ss_pred HHHHHHHHHHHHHHHHhhcCChhhhcCceeEeecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCcee- Confidence 233333333333322211111101 12345677888889999999999886 578999888888644 223211 11 Q ss_pred HHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 453 RLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 453 ~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) .+... ..+..+ ...++.++.|| T Consensus 374 ~~~~N---~~~~~~--~gge~~~~~~~ 395 (395) T protein:vir:96 374 YMTKN---YESVLE--RGGEVDEEVET 395 (395) T ss_pred eeccc---ceechh--ccCCCCCCCCC Confidence 00000 000111 12233344444 No 281 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=22.36 E-value=2.5 Score=18.44 Aligned_cols=405 Identities=10% Similarity=0.087 Sum_probs=158.0 Q ss_pred CCCcccC-----cHH----HHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHHHHhccCCcccccccccccccccccccc Q lcl|Aclame:pro 1 MLNIYIS-----ETD----LIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFT 71 (479) Q Consensus 1 ~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~ 71 (479) +..+... ... -+..+....+.. + ...+|+.+..+++-.. T Consensus 41 ~i~~~~~~~~~~~gg~~~~~~~~e~~~~~~~---e---------LI~~YR~ma~~pEvd~-------------------- 88 (521) T protein:vir:81 41 EVEINDNLPASAWNSLTQQFYSTDQKISTTK---Q---------LVNTYRGLMNNHEVEN-------------------- 88 (521) T ss_pred EecccCCCcceeecceeeeecccccchhhHH---H---------HHHHHHHHhhccchhh-------------------- Confidence 2211111 000 000111111111 1 1233444433333221 Q ss_pred cCcceeecchHHHHHHHH-HhhhhccCeeecCCchhHHHH----H----HHHH-hcCHHHHHHHHHHHHHhCCeEEEEEE Q lcl|Aclame:pro 72 KVNNKAINNYHKLLVDQK-VGYSVGNPIVFNADDDNLTKL----L----NDLL-GEEFDDTITELYLNASNKGVEWLHPY 141 (479) Q Consensus 72 ~~~~ri~~n~~~~iv~~~-a~~l~g~~~~~~~~~~~~~~~----~----~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~ 141 (479) =...||+.. +.--..+|+.+..++.++.+. + +.+. -=+|+....+..|.+.+.|+.|...- T Consensus 89 ---------Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhki 159 (521) T protein:vir:81 89 ---------AVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRRGQDMFRRWYVDSRIFFHKI 159 (521) T ss_pred ---------HHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEE Confidence 011122211 111233455554443322221 1 1121 13788999999999999999999887 Q ss_pred eCCC---CceEEEEEccceeEEEEcCCCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCcccccccccccc Q lcl|Aclame:pro 142 INRK---GEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYG 218 (479) Q Consensus 142 ~d~~---~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~ 218 (479) +|++ |-..+..+||+.+..+.........- +.. .+.+.-+-+|.++...+. ..+..+... T Consensus 160 id~~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~--~~v-------~~~~~e~f~Y~~~~~~~~-~~g~~~~~~------- 222 (521) T protein:vir:81 160 IGKNPKDGIVELRQLDPRNLEYVREIITEDTPE--GKI-------YKATKEYFIYTVGNSSYC-AGGQVFSPN------- 222 (521) T ss_pred EcCCccccceeeeeeCCcceeeeeeecccccCc--cce-------ecceeeeeeeecCCcccc-ccceeecCC------- Confidence 7643 55678999999987654322111000 000 011222334444433321 111110000 Q ss_pred ccccccccccccccccccccccceEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecC--Cccchhh Q lcl|Aclame:pro 219 KMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY--PGTSLQE 296 (479) Q Consensus 219 ~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~lid~~~~~~s~~~~~~~~~~~p~l~~~g~--~~~~~~~ 296 (479) . .+-.+...+. ..| -|.+| .++..-.|-+...+-....| +++-|.+..-+..+.|-.-+.-. +..+... T Consensus 223 ~--~vkI~~dAI~-y~h-SGl~d----~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGnlpk~K 293 (521) T protein:vir:81 223 S--RVKIPRSAIT-YAH-SGLMD----CDDKYIIGYLHRAVKPANQL-KLLEDAMVVYRITRAPERRVFFIDTGNMNNRK 293 (521) T ss_pred c--ceeechhhee-eee-cccee----CCCCeeeecchhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchh Confidence 0 0000000000 000 00011 01111124444433333333 45677777778888776543321 1122111 Q ss_pred H---H----HHhhc----------------ccce----ec---CCCCcceeeecCC--CHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 297 F---I----DNIRY----------------YKSI----KV---DGGGGVDKLEINI--PVEAKKELLDRLEKNIIIFGQG 344 (479) Q Consensus 297 ~---~----~~~~~----------------~~~~----~~---~~~~~~~~~~~~~--~~~~~~~~~~~l~~~i~~~s~~ 344 (479) . . .+.+. ...+ -+ +++.+.+.-+.+. +.. -.+-+.-+++-++.--.+ T Consensus 294 AeqYl~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlg-em~DV~YF~kkLy~aLnV 372 (521) T protein:vir:81 294 AAQHMNSVAQSFKNRVVYDASTGKLKNQQANLSMTEDYWLQRRDGKAITDVTTLPGASGMS-DIDDIRYFNRKLYEALRV 372 (521) T ss_pred HHHHHHHHHHhcCceeEeecccccccccccccchhhhhcccccCCCcccceeecccCCCCC-hHHHHHHHHHHHHHHhCC Confidence 1 0 11110 0000 01 1222333333332 221 222333444444444455 Q ss_pred CCCcc--cc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--ccceeeEEeCCCCCCC Q lcl|Aclame:pro 345 VNPES--QN---TGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSY--DYKTVQITFNHSMIIN 417 (479) Q Consensus 345 ~~~~~--~~---~g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~--~~~~i~i~f~~~~p~d 417 (479) |---. +. +..--+.+|--.+......+.+.+..|...+.++++.=+-+-++....+. -...+.+.|..--.-. T Consensus 373 P~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ 452 (521) T protein:vir:81 373 PLSRSNLSDANMVIGGDGSEITRDELEFSKFIRTRQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYT 452 (521) T ss_pred ccccccCCCCcceeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHH Confidence 52211 11 11112223333333445557777777777777776543322233222111 1235677775443333 Q ss_pred HHHHHH-------HHHHHh---c-cCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhhhccCCCCCCCcCCC Q lcl|Aclame:pro 418 EAEKID-------MAAKST---G-IVSDETIVSNHPWVED--VNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) Q Consensus 418 ~~e~a~-------~~~k~~---g-~is~et~~~~l~~~~d--~~~El~~i~~E~~~~~~~~~~~~~~~~~~~det 479 (479) +...++ +++.+. | .+|.+++.+.+=-.+| ..++.++|++|..+ ....+.+...++= T Consensus 453 ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi~k~ILr~tDeei~~~~k~I~~E~~~------~~~~~p~~~~~~f 521 (521) T protein:vir:81 453 EVKDAEILERRIGLIERITPYIGKYFSNQTVMRDILKYTDDQMDTEKKQIEEEAND------PRFKQTPDEIEDF 521 (521) T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHhhC------CCCCCCcccccCC Confidence 333333 333343 3 4799999987533443 33444555554331 1222211111111 No 282 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=20.62 E-value=2.7 Score=18.18 Aligned_cols=293 Identities=11% Similarity=0.025 Sum_probs=106.3 Q ss_pred HHHhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhh------hc---cCe---- Q lcl|Aclame:pro 32 ILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYS------VG---NPI---- 98 (479) Q Consensus 32 ~~~~~~~~~~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv~~~a~~l------~g---~~~---- 98 (479) +.+.+... .+..... .+..-.++.|.-.+-....+|+ .| +|| T Consensus 1 ~~~~~~~~----------~~~~~~~---------------~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~ 55 (345) T protein:vir:37 1 MKTNVKTD----------NKKGIVI---------------APINDRTFSLNEISASPALDYVGIGFDENYNCYLPPVNRH 55 (345) T ss_pred CCCCcccc----------chhhccc---------------CcceeEEeecCCcccccchhhhhhhhcCCccccCCCCCHH Confidence 11000000 0000000 0000011111111100111121 01 111 Q ss_pred -----------eecCCchhHHHHHHHHHhcC-H-HHHHHHHHHHHHhCCeEEEEEEeCCCCce-EEEEEccceeEEEEcC Q lcl|Aclame:pro 99 -----------VFNADDDNLTKLLNDLLGEE-F-DDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDS 164 (479) Q Consensus 99 -----------~~~~~~~~~~~~~~~~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~~~d~ 164 (479) .-++-.-+.+.+...+.-|. + ...+.+++.+.+.+|.+|+.+..+..|++ .+..++|..+.+..+. T Consensus 56 ~la~l~~~~~~h~~~i~~k~n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~ 135 (345) T protein:vir:37 56 ALAKLPHQNAQHGGILHSRANMVSSLYEGGKALSRMDMRALCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVRKDG 135 (345) T ss_pred HHHHHhhcccccccceeeechHHHhhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEEeC Confidence 10111111122222333343 2 12345677889999999999999888875 5777888777654433 Q ss_pred CCCCceEEEEEEEeeecccCceEEEEEEEeCCcEEEEEEcCCccccccccccccccccccccccccccccccccccceEE Q lcl|Aclame:pro 165 KRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIP 244 (479) Q Consensus 165 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~ 244 (479) .. .+.++.+.. ...+.. ..|.++.+.+++. +++ T Consensus 136 ~~----~~~~~~~~~-~~~g~~----~~~~~~dVihir~------------------------------~~~-------- 168 (345) T protein:vir:37 136 GY----SYLMKKSLY-DTAQEI----YRYDAKDIIFIKL------------------------------YDP-------- 168 (345) T ss_pred Ce----eEEEEEeEe-cCCceE----EEEccccEEEecC------------------------------CCC-------- Confidence 21 111211111 111110 1122222222110 000 Q ss_pred ecCCCCCCchHHHHHHHHHHHHHHHHHH-HHHHHHhccceeee--ecCCc--cchhhHHHHhhcc-------cceec-CC Q lcl|Aclame:pro 245 FKNNEKCVSDLTFYKSLIDIYDNNISTL-ADNLDEIQEVIYVL--KEYPG--TSLQEFIDNIRYY-------KSIKV-DG 311 (479) Q Consensus 245 ~~n~~~g~s~~~~v~~lid~~~~~~s~~-~~~~~~~~~p~l~~--~g~~~--~~~~~~~~~~~~~-------~~~~~-~~ 311 (479) .+...|.|.+......+.. +...+.+ .+-++-.+.|-.++ ++... ++.+.....++.. ..+.+ ++ T Consensus 169 -~~~~~Gls~~~~a~~si~l-~~~a~~~~~~~f~NG~~p~~Il~~~d~~l~~e~~~~lk~~~~~~~g~~n~~~~~i~~p~ 246 (345) T protein:vir:37 169 -MQQVYGSPDYVGGIQSALL-NSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIARKISESKGVGNFRSMFVNIAN 246 (345) T ss_pred -CCCcccccHHHHHHHHHHH-HHHHHHHHHHHHhccCCcceEEEecCCCCCHHHHHHHHHHHHHhcCcccccceEEEcCC Confidence 0122577776655444433 2222222 22233344555554 33221 1111122222111 11222 21 Q ss_pred --CCcceeeecC--CCHHHHHHHHHHHHHHHHHHhCCCCCccccc-------ccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 --GGGVDKLEIN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNT-------GDKSGVALKFLYSLLDLKCSKTEKKFKK 380 (479) Q Consensus 312 --~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~~s~~~~~~~~~~-------g~~Sg~Ai~~~~~~l~~k~~~~~~~~~~ 380 (479) +.++++.... .....+.+..+..++.|...-..|+.-.+.. +++...+..+... .+.=.++.+.. T Consensus 247 g~~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp~llGi~~~~~~~~~~~e~~~~~f~~~----~l~P~~~~ie~ 322 (345) T protein:vir:37 247 GHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYD----EVMPLQEIIAE 322 (345) T ss_pred CcccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCccCCCCCCcccHHHHHHHHHHH----HHHHHHHHHHH Confidence 2345554433 3345577777788888888888886543321 1111111111111 11112222222 Q ss_pred HHHHHHHHHHHHHHhcCCCccccceeeEEeC-CCCCC Q lcl|Aclame:pro 381 AIRELLWFVCEYLKISGNKSYDYKTVQITFN-HSMII 416 (479) Q Consensus 381 ~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~-~~~p~ 416 (479) .+.+ +.... ....+.|. +.+.+ T Consensus 323 ~ln~-------~~~~~-------~~~~i~F~~~~L~~ 345 (345) T protein:vir:37 323 TINQ-------DPEIK-------NLLKIKFREQNFAK 345 (345) T ss_pred Hhhh-------hccCC-------CcceEEecchhhcC Confidence 2221 11111 12346664 33333 Done!