Query lcl|Aclame:protein:vir:102727|NCBI_annot:portal protein|genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Match_columns 945 No_of_seqs 238 out of 1129 Neff 5.7 Searched_HMMs 1612 Date Mon Dec 2 05:45:23 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_54 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_54_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:102727 Length: 945 100.0 0E+00 0E+00 2467.4 85.5 945 1-945 1-945 (945) 2 protein:vir:93610 Length: 454 100.0 5.8E-98 4E-101 553.7 44.8 452 53-550 1-454 (454) 3 protein:vir:4337 Length: 434 # 100.0 6E-94 3.7E-97 531.7 41.6 428 58-535 1-434 (434) 4 protein:vir:100150 Length: 437 100.0 7.3E-94 4.5E-97 531.2 41.9 429 65-537 1-437 (437) 5 protein:vir:1884 Length: 424 # 100.0 4.8E-93 3E-96 526.7 42.6 419 38-525 1-424 (424) 6 protein:vir:101648 Length: 518 100.0 1.8E-92 1.1E-95 523.6 45.5 496 69-609 1-518 (518) 7 protein:vir:105064 Length: 421 100.0 5.6E-93 3.5E-96 526.3 42.5 417 64-533 1-421 (421) 8 protein:vir:7853 Length: 518 # 100.0 7.1E-92 4.4E-95 520.3 45.3 494 69-609 1-518 (518) 9 protein:vir:5737 Length: 419 # 100.0 2.7E-92 1.7E-95 522.6 42.7 415 62-529 1-419 (419) 10 protein:vir:4509 Length: 424 # 100.0 1E-91 6.5E-95 519.4 42.2 418 45-528 1-424 (424) 11 protein:vir:189 Length: 424 # 100.0 1.1E-91 7.1E-95 519.1 41.7 419 38-525 1-424 (424) 12 protein:vir:1431 Length: 419 # 100.0 2E-91 1.2E-94 517.8 42.4 415 63-534 1-419 (419) 13 protein:vir:6240 Length: 457 # 100.0 2.5E-91 1.6E-94 517.3 42.5 441 62-539 1-457 (457) 14 protein:vir:4454 Length: 414 # 100.0 4.5E-91 2.8E-94 515.9 42.1 410 62-533 1-414 (414) 15 protein:vir:1380 Length: 422 # 100.0 3.8E-91 2.3E-94 516.3 41.2 413 62-525 1-422 (422) 16 protein:vir:10362 Length: 432 100.0 8.5E-91 5.3E-94 514.4 42.2 426 46-535 1-432 (432) 17 protein:vir:102080 Length: 429 100.0 8.1E-91 5E-94 514.5 41.4 421 62-530 1-429 (429) 18 protein:vir:483 Length: 413 # 100.0 2E-90 1.3E-93 512.3 41.9 409 63-533 1-413 (413) 19 protein:vir:80333 Length: 419 100.0 1.7E-90 1.1E-93 512.7 41.4 414 64-549 1-419 (419) 20 protein:vir:100249 Length: 431 100.0 2E-90 1.2E-93 512.3 41.1 412 62-516 1-431 (431) 21 protein:vir:97060 Length: 432 100.0 3.2E-90 2E-93 511.3 42.1 426 46-535 1-432 (432) 22 protein:vir:105002 Length: 432 100.0 2.2E-90 1.4E-93 512.1 41.0 421 62-530 1-432 (432) 23 protein:vir:102855 Length: 432 100.0 2.2E-90 1.4E-93 512.1 41.0 421 62-530 1-432 (432) 24 protein:vir:107605 Length: 432 100.0 2.2E-90 1.4E-93 512.1 41.0 421 62-530 1-432 (432) 25 protein:vir:1326 Length: 457 # 100.0 6.3E-90 3.9E-93 509.6 42.6 440 62-540 1-457 (457) 26 protein:vir:81072 Length: 432 100.0 7.3E-90 4.6E-93 509.2 42.0 425 40-535 1-432 (432) 27 protein:vir:102118 Length: 409 100.0 1.1E-89 6.7E-93 508.3 41.4 400 63-527 1-409 (409) 28 protein:vir:3868 Length: 417 # 100.0 8E-89 5E-92 503.6 43.4 410 68-530 1-417 (417) 29 protein:vir:81152 Length: 411 100.0 1.6E-89 9.8E-93 507.4 39.5 399 52-526 1-411 (411) 30 protein:vir:1266 Length: 416 # 100.0 4.8E-89 3E-92 504.8 41.8 412 63-531 1-416 (416) 31 protein:vir:96980 Length: 409 100.0 5.3E-89 3.3E-92 504.6 41.8 405 65-531 1-409 (409) 32 protein:vir:2683 Length: 412 # 100.0 1E-88 6.5E-92 502.9 41.4 408 62-531 1-412 (412) 33 protein:vir:93943 Length: 409 100.0 1.1E-88 6.7E-92 502.8 41.2 405 65-531 1-409 (409) 34 protein:vir:8418 Length: 409 # 100.0 5.4E-88 3.3E-91 499.0 42.1 405 62-530 1-409 (409) 35 protein:vir:81218 Length: 423 100.0 6.8E-88 4.2E-91 498.5 42.1 410 62-529 1-423 (423) 36 protein:vir:94426 Length: 409 100.0 6E-88 3.7E-91 498.8 41.7 405 65-531 1-409 (409) 37 protein:vir:79984 Length: 441 100.0 1.9E-87 1.2E-90 496.0 42.4 428 52-530 1-441 (441) 38 protein:vir:9408 Length: 441 # 100.0 1.9E-87 1.2E-90 496.0 42.4 428 52-530 1-441 (441) 39 protein:vir:80796 Length: 574 100.0 1.2E-87 7.5E-91 497.1 41.2 534 20-588 1-574 (574) 40 protein:vir:98396 Length: 441 100.0 2.7E-87 1.7E-90 495.2 42.5 425 52-530 1-441 (441) 41 protein:vir:80644 Length: 551 100.0 2.2E-86 1.4E-89 490.2 44.4 506 1-565 1-551 (551) 42 protein:vir:100691 Length: 535 100.0 1.4E-86 8.7E-90 491.3 42.2 485 40-579 1-535 (535) 43 protein:vir:81095 Length: 416 100.0 1.3E-85 8E-89 486.0 41.6 410 62-530 1-416 (416) 44 protein:vir:4598 Length: 416 # 100.0 1.3E-85 8E-89 486.0 41.6 410 62-530 1-416 (416) 45 protein:vir:9702 Length: 406 # 100.0 2.2E-85 1.4E-88 484.7 41.4 402 62-530 1-406 (406) 46 protein:vir:101647 Length: 460 100.0 3.2E-85 2E-88 483.8 41.7 419 53-530 1-460 (460) 47 protein:vir:63755 Length: 547 100.0 4.9E-85 3E-88 482.8 42.6 501 1-565 1-547 (547) 48 protein:vir:94666 Length: 723 100.0 1.1E-80 7E-84 458.9 56.9 623 92-945 1-659 (723) 49 protein:vir:8100 Length: 466 # 100.0 1.3E-83 7.8E-87 475.1 40.3 427 52-530 1-466 (466) 50 protein:vir:8317 Length: 409 # 100.0 3.2E-83 2E-86 472.8 38.4 397 21-493 1-409 (409) 51 protein:vir:96579 Length: 576 100.0 8E-83 5E-86 470.7 38.3 537 23-597 1-576 (576) 52 protein:vir:99312 Length: 563 100.0 5.4E-82 3.3E-85 466.1 41.7 510 27-573 1-563 (563) 53 protein:vir:95599 Length: 563 100.0 5.4E-82 3.3E-85 466.1 41.7 510 27-573 1-563 (563) 54 protein:vir:960 Length: 413 # 100.0 1.1E-80 6.8E-84 458.9 41.3 408 40-526 1-413 (413) 55 protein:vir:3843 Length: 397 # 100.0 1.2E-79 7.5E-83 453.2 40.3 395 62-534 1-397 (397) 56 protein:vir:95378 Length: 406 100.0 1.5E-79 9.6E-83 452.7 40.3 400 62-530 1-406 (406) 57 protein:vir:9359 Length: 348 # 100.0 4.8E-79 3E-82 450.0 39.4 344 138-531 1-348 (348) 58 protein:vir:80134 Length: 403 100.0 6.7E-78 4.1E-81 443.7 39.9 395 62-530 1-403 (403) 59 protein:vir:4194 Length: 540 # 100.0 3.7E-76 2.3E-79 434.1 44.0 513 42-645 1-540 (540) 60 protein:vir:104259 Length: 403 100.0 5.7E-77 3.5E-80 438.6 39.4 394 62-530 1-403 (403) 61 protein:vir:100187 Length: 385 100.0 2.8E-76 1.7E-79 434.8 39.6 382 62-529 1-385 (385) 62 protein:vir:6210 Length: 394 # 100.0 1.2E-76 7.5E-80 436.8 37.1 387 62-529 1-394 (394) 63 protein:vir:100882 Length: 383 100.0 1.1E-75 7E-79 431.5 39.5 380 62-528 1-383 (383) 64 protein:vir:3153 Length: 467 # 100.0 1.3E-75 8.3E-79 431.1 38.7 410 117-565 1-467 (467) 65 protein:vir:7407 Length: 392 # 100.0 1.1E-74 6.6E-78 426.1 38.7 374 53-523 1-392 (392) 66 protein:vir:1082 Length: 359 # 100.0 8.6E-75 5.3E-78 426.6 37.7 356 62-481 1-359 (359) 67 protein:vir:4854 Length: 386 # 100.0 4.6E-74 2.8E-77 422.6 39.9 383 62-530 1-386 (386) 68 protein:vir:4156 Length: 542 # 100.0 2.1E-73 1.3E-76 419.0 42.9 505 53-635 1-542 (542) 69 protein:vir:1023 Length: 392 # 100.0 3.1E-73 1.9E-76 418.1 38.8 385 58-523 1-392 (392) 70 protein:vir:3989 Length: 392 # 100.0 3.1E-73 1.9E-76 418.1 38.8 385 58-523 1-392 (392) 71 protein:vir:100650 Length: 395 100.0 1.2E-72 7.2E-76 414.9 36.8 384 62-531 1-395 (395) 72 protein:vir:101289 Length: 395 100.0 1.2E-72 7.2E-76 414.9 36.8 384 62-531 1-395 (395) 73 protein:vir:9507 Length: 395 # 100.0 1.2E-72 7.2E-76 414.9 36.8 384 62-531 1-395 (395) 74 protein:vir:95965 Length: 385 100.0 6.8E-73 4.2E-76 416.2 35.4 372 62-530 1-385 (385) 75 protein:vir:78310 Length: 376 100.0 7.1E-72 4.4E-75 410.6 34.0 366 62-502 1-376 (376) 76 protein:vir:4995 Length: 384 # 100.0 2.9E-71 1.8E-74 407.3 34.6 373 62-489 1-384 (384) 77 protein:vir:4952 Length: 386 # 100.0 1.8E-70 1.1E-73 403.0 38.3 384 62-530 1-386 (386) 78 protein:vir:94002 Length: 378 100.0 1.3E-70 8E-74 403.7 35.2 367 62-530 1-378 (378) 79 protein:vir:99452 Length: 651 100.0 7.9E-71 4.9E-74 404.9 33.9 539 47-670 1-651 (651) 80 protein:vir:1661 Length: 378 # 100.0 2.1E-70 1.3E-73 402.5 35.1 367 62-530 1-378 (378) 81 protein:vir:4089 Length: 395 # 100.0 6.7E-70 4.1E-73 399.8 35.1 383 60-533 1-395 (395) 82 protein:vir:93867 Length: 378 100.0 7.9E-70 4.9E-73 399.4 35.2 367 62-530 1-378 (378) 83 protein:vir:9641 Length: 395 # 100.0 2.4E-69 1.5E-72 396.8 33.5 377 62-529 1-395 (395) 84 protein:vir:4828 Length: 382 # 100.0 3E-68 1.8E-71 390.8 39.1 379 62-530 1-382 (382) 85 protein:vir:98643 Length: 395 100.0 8.7E-69 5.4E-72 393.7 34.9 381 62-529 1-395 (395) 86 protein:vir:79772 Length: 648 100.0 3.7E-67 2.3E-70 384.8 42.7 585 34-701 1-648 (648) 87 protein:vir:858 Length: 378 # 100.0 1.4E-68 8.4E-72 392.7 34.8 367 62-530 1-378 (378) 88 protein:vir:94869 Length: 378 100.0 5.9E-68 3.6E-71 389.2 34.2 367 62-530 1-378 (378) 89 protein:vir:78641 Length: 278 100.0 6.7E-61 4.1E-64 350.5 33.4 276 138-447 1-278 (278) 90 protein:vir:79150 Length: 368 100.0 9.4E-56 5.8E-59 322.3 30.2 349 64-463 1-368 (368) 91 protein:vir:3780 Length: 345 # 100.0 4.7E-55 2.9E-58 318.4 33.3 335 65-449 1-345 (345) 92 protein:vir:267 Length: 348 # 100.0 1.4E-55 8.9E-59 321.3 29.8 329 71-456 1-348 (348) 93 protein:vir:3743 Length: 345 # 100.0 1.6E-54 9.9E-58 315.5 32.1 334 65-449 1-345 (345) 94 protein:vir:100328 Length: 346 100.0 4.5E-54 2.8E-57 313.1 31.9 329 71-452 1-346 (346) 95 protein:vir:78749 Length: 337 100.0 6.6E-54 4.1E-57 312.1 29.0 323 71-448 1-337 (337) 96 protein:vir:98567 Length: 340 100.0 2.1E-53 1.3E-56 309.4 30.2 330 65-451 1-340 (340) 97 protein:vir:79207 Length: 351 100.0 1.3E-52 8E-56 305.1 32.2 322 71-454 1-351 (351) 98 protein:vir:78191 Length: 351 100.0 1.8E-52 1.1E-55 304.2 31.9 322 71-454 1-351 (351) 99 protein:vir:6058 Length: 344 # 100.0 1.6E-52 1E-55 304.5 30.2 330 64-450 1-344 (344) 100 protein:vir:103971 Length: 376 100.0 3.3E-52 2E-55 302.8 31.0 358 40-454 1-376 (376) 101 protein:vir:1150 Length: 350 # 100.0 5.7E-52 3.5E-55 301.5 30.8 333 65-447 1-350 (350) 102 protein:vir:5691 Length: 344 # 100.0 7.1E-52 4.4E-55 301.0 30.3 326 71-452 1-344 (344) 103 protein:vir:2013 Length: 344 # 100.0 1.9E-51 1.2E-54 298.6 30.5 328 71-450 1-344 (344) 104 protein:vir:4698 Length: 251 # 100.0 3.7E-46 2.3E-49 269.7 26.1 247 62-357 1-251 (251) 105 protein:vir:98853 Length: 219 100.0 4.4E-45 2.7E-48 263.8 21.9 210 226-451 1-219 (219) 106 protein:vir:5249 Length: 437 # 99.9 9.5E-27 5.9E-30 163.3 31.6 403 78-528 1-437 (437) 107 protein:vir:94049 Length: 532 99.9 9.2E-26 5.7E-29 157.9 31.7 468 36-555 1-532 (532) 108 protein:vir:107742 Length: 537 99.9 7.7E-24 4.8E-27 147.3 32.7 457 39-538 1-537 (537) 109 protein:vir:108215 Length: 469 99.9 1.3E-20 7.8E-24 129.7 33.8 421 72-543 1-469 (469) 110 protein:vir:103860 Length: 528 99.9 3.2E-19 2E-22 122.0 40.6 494 60-608 1-528 (528) 111 protein:vir:99232 Length: 526 99.8 1.6E-18 9.8E-22 118.2 40.8 493 60-608 1-526 (526) 112 protein:vir:104338 Length: 422 99.8 2.9E-20 1.8E-23 127.7 30.4 390 77-527 1-422 (422) 113 protein:vir:79063 Length: 491 99.8 3.2E-18 2E-21 116.5 40.8 470 59-609 1-491 (491) 114 protein:vir:79233 Length: 526 99.8 4.3E-18 2.7E-21 115.8 40.3 492 60-608 1-526 (526) 115 protein:vir:107662 Length: 427 99.8 8.6E-20 5.4E-23 125.1 29.6 385 62-529 1-427 (427) 116 protein:vir:79647 Length: 435 99.8 4.5E-19 2.8E-22 121.2 31.1 398 62-528 1-435 (435) 117 protein:vir:80040 Length: 461 99.8 6.6E-19 4.1E-22 120.2 30.0 406 64-525 1-461 (461) 118 protein:vir:107880 Length: 491 99.8 7E-17 4.4E-20 109.1 41.0 466 34-609 1-491 (491) 119 protein:vir:96068 Length: 765 99.8 4.6E-19 2.9E-22 121.1 28.1 619 31-740 1-765 (765) 120 protein:vir:1986 Length: 512 # 99.8 5.3E-17 3.3E-20 109.8 38.2 484 60-644 1-512 (512) 121 protein:vir:99853 Length: 488 99.8 3E-17 1.9E-20 111.1 34.4 458 71-602 1-488 (488) 122 protein:vir:79538 Length: 502 99.7 4.7E-17 2.9E-20 110.1 29.9 441 52-538 1-502 (502) 123 protein:vir:389 Length: 530 # 99.7 2.8E-17 1.7E-20 111.3 27.7 444 71-534 1-530 (530) 124 protein:vir:79511 Length: 448 99.7 1.6E-16 1E-19 107.1 31.8 423 63-549 1-448 (448) 125 protein:vir:77981 Length: 448 99.7 3.1E-16 1.9E-19 105.6 33.0 423 64-550 1-448 (448) 126 protein:vir:99563 Length: 862 99.7 8.4E-17 5.2E-20 108.7 28.6 697 3-783 1-862 (862) 127 protein:vir:96738 Length: 505 99.7 1.5E-16 9.3E-20 107.3 29.5 443 18-528 1-505 (505) 128 protein:vir:98816 Length: 446 99.6 3.8E-15 2.4E-18 99.6 30.6 378 78-485 1-446 (446) 129 protein:vir:95254 Length: 488 99.6 3.4E-14 2.1E-17 94.4 34.4 419 80-550 1-488 (488) 130 protein:vir:3420 Length: 533 # 99.6 1.8E-15 1.1E-18 101.5 26.4 447 38-531 1-533 (533) 131 protein:vir:78161 Length: 355 99.6 2.3E-14 1.4E-17 95.4 29.4 334 202-556 1-355 (355) 132 protein:vir:6382 Length: 553 # 99.6 5.9E-15 3.7E-18 98.6 25.3 453 70-537 1-553 (553) 133 protein:vir:10321 Length: 495 99.5 6.2E-14 3.8E-17 93.0 26.4 427 62-530 1-495 (495) 134 protein:vir:99088 Length: 629 99.5 1.3E-13 7.8E-17 91.3 26.0 521 63-605 1-629 (629) 135 protein:vir:8654 Length: 629 # 99.5 2E-13 1.2E-16 90.2 26.0 521 63-605 1-629 (629) 136 protein:vir:105782 Length: 449 99.4 3.1E-13 2E-16 89.1 23.8 410 34-520 1-449 (449) 137 protein:vir:95542 Length: 548 99.4 1.3E-11 8.2E-15 80.2 31.7 471 31-570 1-548 (548) 138 protein:vir:102426 Length: 631 99.4 3.7E-12 2.3E-15 83.2 27.0 530 62-644 1-631 (631) 139 protein:vir:107517 Length: 639 99.3 2.1E-11 1.3E-14 79.1 28.1 539 52-645 1-639 (639) 140 protein:vir:97900 Length: 639 99.3 2.1E-11 1.3E-14 79.1 28.1 539 52-645 1-639 (639) 141 protein:vir:106027 Length: 629 99.3 1.6E-10 9.8E-14 74.3 29.3 528 57-605 1-629 (629) 142 protein:vir:106716 Length: 698 99.2 2E-10 1.2E-13 73.8 28.8 557 1-646 22-698 (698) 143 protein:vir:78589 Length: 695 99.2 2.9E-10 1.8E-13 72.8 29.3 558 1-646 22-695 (695) 144 protein:vir:106491 Length: 646 99.2 3.1E-10 1.9E-13 72.7 28.8 571 68-688 1-646 (646) 145 protein:vir:101541 Length: 694 99.2 5.1E-10 3.2E-13 71.5 29.6 562 2-646 1-694 (694) 146 protein:vir:3648 Length: 695 # 99.2 7.8E-10 4.8E-13 70.5 29.5 563 12-646 1-695 (695) 147 protein:vir:5839 Length: 533 # 99.1 2E-09 1.2E-12 68.3 27.6 463 40-569 1-533 (533) 148 protein:vir:104082 Length: 485 98.8 5E-08 3.1E-11 60.6 24.8 397 85-532 1-485 (485) 149 protein:vir:99916 Length: 504 98.6 1.7E-07 1.1E-10 57.7 29.2 431 74-538 1-504 (504) 150 protein:vir:103219 Length: 201 98.6 5.2E-09 3.2E-12 66.0 15.0 185 307-528 1-201 (201) 151 protein:vir:98444 Length: 434 98.6 2.2E-07 1.4E-10 57.1 29.0 374 101-535 1-434 (434) 152 protein:vir:5961 Length: 503 # 98.6 3E-07 1.9E-10 56.4 29.5 447 1-543 1-503 (503) 153 protein:vir:7987 Length: 456 # 98.5 3.1E-07 1.9E-10 56.3 23.6 406 53-527 1-456 (456) 154 protein:vir:94742 Length: 409 98.5 5.8E-07 3.6E-10 54.8 27.5 346 92-481 1-409 (409) 155 protein:vir:2427 Length: 485 # 98.4 6.2E-07 3.8E-10 54.6 27.1 414 74-539 1-485 (485) 156 protein:vir:38 Length: 496 # N 98.4 1.1E-06 6.8E-10 53.2 23.6 427 23-530 1-496 (496) 157 protein:vir:80680 Length: 441 98.3 1.3E-06 7.8E-10 52.9 24.9 364 91-526 1-441 (441) 158 protein:vir:7768 Length: 484 # 98.3 1.3E-06 8.3E-10 52.8 27.3 406 76-541 1-484 (484) 159 protein:vir:105819 Length: 456 98.3 1.5E-06 9.4E-10 52.5 26.9 404 53-525 1-456 (456) 160 protein:vir:102602 Length: 456 98.3 1.5E-06 9.4E-10 52.5 26.9 404 53-525 1-456 (456) 161 protein:vir:4223 Length: 486 # 98.3 1.6E-06 9.9E-10 52.4 25.9 406 85-540 1-486 (486) 162 protein:vir:8184 Length: 474 # 98.2 2.4E-06 1.5E-09 51.3 28.3 384 94-527 1-474 (474) 163 protein:vir:98883 Length: 517 98.1 4.8E-06 3E-09 49.8 25.6 435 25-530 1-517 (517) 164 protein:vir:3964 Length: 453 # 98.1 5.2E-06 3.2E-09 49.6 29.5 410 63-537 1-453 (453) 165 protein:vir:9568 Length: 410 # 98.1 5.8E-06 3.6E-09 49.3 25.5 357 62-503 1-410 (410) 166 protein:vir:2341 Length: 488 # 97.9 1.2E-05 7.5E-09 47.5 24.0 415 78-534 1-488 (488) 167 protein:vir:9751 Length: 422 # 97.9 1.3E-05 7.8E-09 47.5 24.3 355 92-506 1-422 (422) 168 protein:vir:97171 Length: 512 97.8 1.7E-05 1.1E-08 46.7 29.4 442 1-537 1-512 (512) 169 protein:vir:106639 Length: 481 97.8 1.8E-05 1.1E-08 46.5 28.4 418 57-531 1-481 (481) 170 protein:vir:95806 Length: 440 97.8 2.1E-05 1.3E-08 46.3 28.5 400 58-529 1-440 (440) 171 protein:vir:96240 Length: 511 97.8 2.1E-05 1.3E-08 46.2 26.4 440 1-537 11-511 (511) 172 protein:vir:80959 Length: 499 97.7 3E-05 1.8E-08 45.4 29.4 425 1-530 2-499 (499) 173 protein:vir:99522 Length: 470 97.7 3E-05 1.8E-08 45.4 30.8 397 62-528 1-470 (470) 174 protein:vir:103951 Length: 511 97.6 3.4E-05 2.1E-08 45.1 29.4 442 1-538 11-511 (511) 175 protein:vir:1634 Length: 409 # 97.6 3.9E-05 2.4E-08 44.7 26.4 341 92-481 1-409 (409) 176 protein:vir:99781 Length: 511 97.6 4E-05 2.5E-08 44.7 25.2 440 1-537 11-511 (511) 177 protein:vir:94101 Length: 474 97.6 4.3E-05 2.7E-08 44.5 28.1 420 57-535 1-474 (474) 178 protein:vir:105889 Length: 474 97.6 4.3E-05 2.7E-08 44.5 28.1 420 57-535 1-474 (474) 179 protein:vir:94805 Length: 492 97.4 6.8E-05 4.2E-08 43.4 29.4 428 1-537 8-492 (492) 180 protein:vir:3609 Length: 452 # 97.4 7E-05 4.3E-08 43.4 30.5 390 81-530 1-452 (452) 181 protein:vir:9871 Length: 429 # 97.3 9E-05 5.6E-08 42.8 25.1 370 94-529 1-429 (429) 182 protein:vir:95113 Length: 474 97.3 9.2E-05 5.7E-08 42.7 31.7 402 67-534 1-474 (474) 183 protein:vir:104892 Length: 558 97.3 9.5E-05 5.9E-08 42.6 25.3 462 56-565 1-558 (558) 184 protein:vir:79043 Length: 479 97.3 0.0001 6.3E-08 42.5 28.7 403 1-529 18-479 (479) 185 protein:vir:1236 Length: 483 # 97.3 0.0001 6.3E-08 42.5 29.7 432 30-537 1-483 (483) 186 protein:vir:2500 Length: 501 # 97.3 0.00011 6.7E-08 42.3 29.1 391 76-532 1-501 (501) 187 protein:vir:78805 Length: 511 97.2 0.00012 7.7E-08 42.0 25.0 438 1-537 11-511 (511) 188 protein:vir:96366 Length: 511 97.2 0.00012 7.7E-08 42.0 25.0 438 1-537 11-511 (511) 189 protein:vir:99072 Length: 479 97.2 0.00012 7.7E-08 42.0 28.8 404 76-553 1-479 (479) 190 protein:vir:9306 Length: 511 # 97.2 0.00012 7.7E-08 42.0 27.6 440 1-537 11-511 (511) 191 protein:vir:78907 Length: 518 97.2 0.00013 8E-08 41.9 29.6 427 21-525 1-518 (518) 192 protein:vir:78227 Length: 480 97.2 0.00013 8.1E-08 41.9 26.3 399 93-542 1-480 (480) 193 protein:vir:733 Length: 453 # 97.2 0.00014 9E-08 41.6 29.4 413 54-526 1-453 (453) 194 protein:vir:106999 Length: 564 97.1 0.00016 9.7E-08 41.5 27.6 442 56-530 1-564 (564) 195 protein:vir:4782 Length: 522 # 97.1 0.00017 1.1E-07 41.2 26.9 433 21-529 1-522 (522) 196 protein:vir:97336 Length: 492 97.0 0.00021 1.3E-07 40.7 29.5 428 1-537 4-492 (492) 197 protein:vir:78537 Length: 480 97.0 0.00022 1.3E-07 40.7 27.3 398 92-550 1-480 (480) 198 protein:vir:4898 Length: 502 # 97.0 0.00024 1.5E-07 40.5 30.9 423 1-534 31-502 (502) 199 protein:vir:104500 Length: 537 96.9 0.00027 1.7E-07 40.2 29.2 450 55-540 1-537 (537) 200 protein:vir:93747 Length: 472 96.9 0.00027 1.7E-07 40.2 32.5 410 59-537 1-472 (472) 201 protein:vir:96494 Length: 501 96.9 0.00029 1.8E-07 40.0 31.7 451 16-534 1-501 (501) 202 protein:vir:106571 Length: 499 96.8 0.00031 1.9E-07 39.8 28.5 413 76-551 1-499 (499) 203 protein:vir:105292 Length: 478 96.8 0.00032 2E-07 39.8 25.1 418 1-535 1-478 (478) 204 protein:vir:103177 Length: 533 96.7 0.00037 2.3E-07 39.4 26.5 448 56-541 1-533 (533) 205 protein:vir:3028 Length: 500 # 96.6 0.00046 2.8E-07 38.9 21.9 424 25-521 1-500 (500) 206 protein:vir:9815 Length: 500 # 96.6 0.00046 2.8E-07 38.9 21.9 424 25-521 1-500 (500) 207 protein:vir:96266 Length: 474 96.6 0.00048 3E-07 38.8 30.4 399 66-532 1-474 (474) 208 protein:vir:95899 Length: 474 96.6 0.00048 3E-07 38.8 30.4 399 66-532 1-474 (474) 209 protein:vir:78083 Length: 537 96.5 0.00056 3.5E-07 38.4 35.6 433 66-542 1-537 (537) 210 protein:vir:79703 Length: 505 96.5 0.00059 3.6E-07 38.3 29.4 424 1-517 1-505 (505) 211 protein:vir:97447 Length: 474 96.4 0.00063 3.9E-07 38.1 31.9 398 64-537 1-474 (474) 212 protein:vir:94498 Length: 474 96.4 0.00063 3.9E-07 38.1 31.9 398 64-537 1-474 (474) 213 protein:vir:2732 Length: 501 # 96.3 0.00072 4.5E-07 37.8 30.8 439 1-534 1-501 (501) 214 protein:vir:105461 Length: 470 96.3 0.0008 5E-07 37.6 22.8 395 62-530 1-470 (470) 215 protein:vir:5665 Length: 511 # 96.0 0.0011 7E-07 36.7 22.9 420 43-518 1-511 (511) 216 protein:vir:4073 Length: 279 # 95.2 0.00057 3.5E-07 38.4 9.3 274 111-483 1-279 (279) 217 protein:vir:106282 Length: 521 95.0 0.0031 1.9E-06 34.4 22.2 429 52-525 1-521 (521) 218 protein:vir:1587 Length: 508 # 95.0 0.0031 1.9E-06 34.3 31.0 423 40-530 1-508 (508) 219 protein:vir:107112 Length: 478 94.8 0.0035 2.2E-06 34.0 28.4 388 78-532 1-478 (478) 220 protein:vir:101494 Length: 527 94.2 0.0052 3.2E-06 33.1 29.3 407 78-534 1-527 (527) 221 protein:vir:102239 Length: 527 94.0 0.0057 3.6E-06 32.9 29.5 407 78-534 1-527 (527) 222 protein:vir:98265 Length: 524 92.4 0.012 7.2E-06 31.2 27.6 441 38-525 1-524 (524) 223 protein:vir:96839 Length: 474 91.2 0.017 1.1E-05 30.3 29.7 406 61-534 1-474 (474) 224 protein:vir:6596 Length: 521 # 90.0 0.023 1.4E-05 29.6 28.1 437 39-525 1-521 (521) 225 protein:vir:94546 Length: 506 89.7 0.025 1.6E-05 29.4 31.4 434 58-552 1-506 (506) 226 protein:vir:101189 Length: 516 89.1 0.028 1.7E-05 29.1 23.8 430 54-525 1-516 (516) 227 protein:vir:101806 Length: 516 89.1 0.028 1.7E-05 29.1 23.8 430 54-525 1-516 (516) 228 protein:vir:9922 Length: 489 # 89.1 0.028 1.8E-05 29.1 29.0 414 65-536 1-489 (489) 229 protein:vir:81017 Length: 521 88.5 0.032 2E-05 28.8 28.3 437 43-525 1-521 (521) 230 protein:vir:6896 Length: 523 # 88.5 0.032 2E-05 28.8 22.3 432 52-525 1-523 (523) 231 protein:vir:108049 Length: 524 87.7 0.037 2.3E-05 28.4 23.6 425 28-525 1-524 (524) 232 protein:vir:105154 Length: 525 83.7 0.067 4.1E-05 27.0 20.6 389 116-547 1-525 (525) 233 protein:vir:7208 Length: 524 # 83.4 0.069 4.3E-05 27.0 24.4 433 41-525 1-524 (524) 234 protein:vir:103458 Length: 524 83.2 0.07 4.4E-05 26.9 24.4 433 41-525 1-524 (524) 235 protein:vir:102950 Length: 471 81.1 0.089 5.5E-05 26.4 28.2 371 92-530 1-471 (471) 236 protein:vir:96179 Length: 468 78.3 0.12 7.2E-05 25.7 29.6 401 61-534 1-468 (468) 237 protein:vir:102330 Length: 451 57.1 0.44 0.00027 22.5 29.2 361 94-527 1-451 (451) 238 protein:vir:100598 Length: 516 45.0 0.79 0.00049 21.2 27.8 435 29-525 1-516 (516) 239 protein:vir:94709 Length: 522 22.8 2.4 0.0015 18.5 21.3 415 62-562 1-522 (522) No 1 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=100.00 E-value=0 Score=2467.40 Aligned_cols=945 Identities=100% Similarity=1.461 Sum_probs=922.2 Q ss_pred CchhhhHhhhheeccccccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeecccccccc Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPY 80 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~ 80 (945) ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||+||++||+|+++|. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~i~~pf 80 (945) T protein:vir:10 1 MKSLENIIKGFIVNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPY 80 (945) T ss_pred CchhhhHhhhheeccccccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeehhhhHHHhhcccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccch Q lcl|Aclame:pro 81 NHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKR 160 (945) Q Consensus 81 ~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~ 160 (945) .+++||+.+++++.++++.+.+|+++.|+++++++++++.++++++|++||++||++||++|+++|++++++......++ T Consensus 81 kkk~~~~~~d~f~~s~es~s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIAsLPlklYrr~edG~~~~~~kk 160 (945) T protein:vir:10 81 NHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKR 160 (945) T ss_pred cccccchhhhhhhccCccceecccccCccceeeehhhhhhhhccHHHHHHHHHHHhhhccCceEEEEecccCcccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877776777 Q ss_pred hhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEE Q lcl|Aclame:pro 161 IRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQ 240 (945) Q Consensus 161 ~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~ 240 (945) ..++||+++||++||++||+++||++|+++++.+++++||+|++++|+..|+|++|+|++|++|++..+++|+..++|++ T Consensus 161 ~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G~ii~L~pLdPs~Vti~~ddDG~~~y~Yv~ 240 (945) T protein:vir:10 161 IRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQ 240 (945) T ss_pred cccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCCcEEEEEEE Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999888998 Q ss_pred eeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccccccc Q lcl|Aclame:pro 241 EVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDI 320 (945) Q Consensus 241 ~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~ 320 (945) ..+|+....++++|+|||++++++++...|+|+|||.+++++++.+.+++++++++|.+||++|+|||+++.+...+.+. T Consensus 241 ~idG~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar~FskNGa~PsGILsvkg~~~~d~k~ 320 (945) T protein:vir:10 241 EVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDI 320 (945) T ss_pred ecCCceEEEecCCceEEEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecCcccccccc Confidence 88998888899999999999999988888999999999999999999999999999999999999999999887777788 Q ss_pred chhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcc Q lcl|Aclame:pro 321 YPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKA 400 (945) Q Consensus 321 ~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~S 400 (945) ++.+++++++++++.|++.++|.++|+++++++|++|+++++++.|+||++++++++++||++|||||++||+.++++++ T Consensus 321 ~~~LseEq~erlKe~wee~~sG~NnG~piVLdeGmef~pLs~s~~DaQfLEsrkfs~eeIArAFGVPP~lLG~~e~st~S 400 (945) T protein:vir:10 321 YPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKA 400 (945) T ss_pred ccccCHHHHHHHHHHHHHHhCCcccccceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCcc Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCC Q lcl|Aclame:pro 401 TAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPV 480 (945) Q Consensus 401 N~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPv 480 (945) |+|++...|+++||+||+++||+++|++|.+.....+++|+|+...+.|.+++++++++++++|+||+||+|+++|+||+ T Consensus 401 NiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~eg~~i~fdFd~ldl~D~ksraEal~kli~sGiLTiNEvRe~lGLpPI 480 (945) T protein:vir:10 401 TAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPV 480 (945) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeEEEecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 99999999999999999999999999999877667789999999999999999999999999999999999999999999 Q ss_pred CCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHhhhhhhhhHHHH Q lcl|Aclame:pro 481 PWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAGLEVLRNLFKSLDANASENLK 560 (945) Q Consensus 481 eGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k~l~a~~~~~~~ 560 (945) ||||.++++.+++.|.+..++++.++.+++.++...+++.+.+++.++++..+++.++++.+..+..++++++.+.+.++ T Consensus 481 eGGD~lli~~nn~~P~d~~~ka~~ga~p~q~aq~~~dqp~~kGGe~dEns~~psE~kda~~e~~~~l~~~~~~~a~e~i~ 560 (945) T protein:vir:10 481 PWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAGLEVLRNLFKSLDANASENLK 560 (945) T ss_pred CCcceeeeccccccccccccccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH Confidence 99999999988888888888888888888888888888888888888888888999999999999999999999999999 Q ss_pred HhhccCCccccccchHHHHHHHHhhhhHHHHHhhhhhhhcccccCCCcccccchhhHHHHHHhhccchhhhhhhhccccc Q lcl|Aclame:pro 561 QVIELTNDDNYLKEKELLTRVLKSVGLDSVSEFIENNSQTDVEVSAKDILSFKYNSLVEDETIYATEKDIVLRLLGKNSL 640 (945) Q Consensus 561 ~~~dl~n~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (945) +++++.++|+++.+++++.+++|+.|+++|.+||+++++||++|||||++||+|+++|+|+|+||||||||||||||||| T Consensus 561 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (945) T protein:vir:10 561 QVIELTNDDNYLKEKELLTRVLKSVGLDSVSEFIENNSQTDVEVSAKDILSFKYNSLVEDETIYATEKDIVLRLLGKNSL 640 (945) T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhhhHHHHHHHhcCCccceeechhhhhhhhhhhhccccceeecchhhhhhhhccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred chhhhhhhhhhccccccccceeeecCccceeEEeccccccchhhHHHHHHHHHHhhcccCCCceeeeeeehhhccCcccc Q lcl|Aclame:pro 641 DHRETFGLIATHFDCHTVPKVEFYSDKDKRYVFANLSVCSPINSVEKFTRLDELLSCTTKKPTKLEIVFDWLEFKNFKDI 720 (945) Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (945) |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (945) T protein:vir:10 641 DHRETFGLIATHFDCHTVPKVEFYSDKDKRYVFANLSVCSPINSVEKFTRLDELLSCTTKKPTKLEIVFDWLEFKNFKDI 720 (945) T ss_pred chhhhhhhhhcccccccccceeeeccccceeEEeccccccchhhHHHHHHHHHHhhcccCCCceeeeeeehhhccCcccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhhhhhhhhcCCcchhhHHHHHHHhhcchHHHHHHHHHHHHhhhhchhHHHHHhhhccchhHHHHHHHHHHHhhH Q lcl|Aclame:pro 721 DLLKYSQLGDSIKKKNYDSFDYLDDVEKLLVAPYEELENLVNLLKKKFFVEGELFSLVDSYKATPHSLFLLFSLIEELGV 800 (945) Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (945) |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (945) T protein:vir:10 721 DLLKYSQLGDSIKKKNYDSFDYLDDVEKLLVAPYEELENLVNLLKKKFFVEGELFSLVDSYKATPHSLFLLFSLIEELGV 800 (945) T ss_pred hhhhhhhhhhhhhhcCCcchhhHHHHHHHhhcchHHHHHHHHHHHhhhhhchhHHHHHhhhccchhHHHHHHHHHHHhhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHhHHHHHHHHhcccccccchhhHhHHHHhhchHHHHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHhhcc Q lcl|Aclame:pro 801 EKINSLVASCKGVLEMLLGVQVENFETNHMVHWLLSFSYDKIREVIASLSYFIETISIDCEFEKIRLLGTIGSLISSFGQ 880 (945) Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (945) |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| T Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (945) T protein:vir:10 801 EKINSLVASCKGVLEMLLGVQVENFETNHMVHWLLSFSYDKIREVIASLSYFIETISIDCEFEKIRLLGTIGSLISSFGQ 880 (945) T ss_pred HHHHHHHHhHHHHHHHHhcceeeccchhhhhhhhhhcchHHHHHHHHHHHHhhhhheeccchhhhhhhhhHHHHHHhhcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCcceEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhcCC Q lcl|Aclame:pro 881 NKNINFVFVAENFDDYMNLVESISEEVDNIFMKSFVFKSLLGEQLERQEARDYVKEFIKKKYGEL 945 (945) Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945) ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| T Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945) T protein:vir:10 881 NKNINFVFVAENFDDYMNLVESISEEVDNIFMKSFVFKSLLGEQLERQEARDYVKEFIKKKYGEL 945 (945) T ss_pred CCcceEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhhhcCC Confidence 99999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=100.00 E-value=5.8e-98 Score=553.67 Aligned_cols=452 Identities=16% Similarity=0.233 Sum_probs=355.3 Q ss_pred hccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHH Q lcl|Aclame:pro 53 AWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVS 132 (945) Q Consensus 53 ~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~ 132 (945) -|| .||+++- +.++..+.. .... .+++....+. +. .....++.|+...||++++||+||+ T Consensus 1 ~~~--------~~~~~~~--~~~~~~~~~--~~~~-~~~~~~~~~~------~~-g~~~~g~~v~~~~al~~~~V~~~v~ 60 (454) T protein:vir:93 1 MWN--------LLRRTRK--NQKSGRDVR--EAGW-TSLFQAVAEP------FA-GAWQQGVKADPEAVLSFHAVFACIS 60 (454) T ss_pred CCC--------ccccCcc--ccccccccc--chhh-hhhhhhhhhh------hc-chhhcCcccChHHhhccHHHHHHHH Confidence 222 2344331 111111110 0000 0011111111 11 1122345678899999999999999 Q ss_pred HHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCe Q lcl|Aclame:pro 133 EIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGN 212 (945) Q Consensus 133 iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~ 212 (945) +||++||++||++|++++++. +++..+|+++.|+.+|||+||+++||+. ++.+++++||+|+++.|+..|+ T Consensus 61 ~Ia~~iA~lp~~~~~~~~~g~-----~~~~~~~~~~~L~~~PN~~~t~~~f~~~----l~~~lll~Gna~~~i~r~~~G~ 131 (454) T protein:vir:93 61 LISQDIAKMRLRLMQTDAQGI-----RRETRRGDIARLCRRPNAQQNRIQFFEL----WLNAKLRHGNTVVLKIRNARGQ 131 (454) T ss_pred HHHHhhccCceEEEEeccCCc-----cchhhhHHHHHHHhcCCCCCCHHHHHHH----HHHHHhhcCceEEEEEECCCCc Confidence 999999999999999887764 3456778888888999999999999876 5677889999999999999999 Q ss_pred EEEEEEcCCceeEEEEcCCCceEEEEEEeeCC--ceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 LVAITPVDGTTIKPILSEDTGIVVGYVQEVDG--AIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFID 290 (945) Q Consensus 213 pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG--~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aae 290 (945) +++|+|++|++|++..+++|...|+|...... +....++++||||++.....++ .+|+||+..+++.+..+.+++ T Consensus 132 ~~~L~~i~~~~v~v~~~~~g~~~y~~~~~~~~~~~~~~~~~~~eViH~k~~~~~~~---~~G~sp~~~~~~~i~~~~~~~ 208 (454) T protein:vir:93 132 IKELRILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHP---LIGLPPVYAAGLAATQGHHIQ 208 (454) T ss_pred EEEEEEEcCcceEEEEcCCCcEEEEEEeccccccceeEEecCcceEEeccCCCCCC---ceeccHHHHHHHHHHHHHHHH Confidence 99999999999999999999887766544332 2356799999999986544332 379999999999999999999 Q ss_pred HHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHH Q lcl|Aclame:pro 291 KGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFK 370 (945) Q Consensus 291 e~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~Qfl 370 (945) +++.++|. ||++|+|||+++ +.+++++.+++++.|++.++|.|+|+++|+++|++|+++++++.|+||+ T Consensus 209 ~~~~~~f~-ng~~p~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~l 277 (454) T protein:vir:93 209 ENSTSFFR-NGGRPSGVIEIP----------GSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTV 277 (454) T ss_pred HHHHHHHh-ccCCccEEEecC----------CCCCHHHHHHHHHHHHHHhcccccCCceeccCCceEEEcccChhHHHHH Confidence 99999996 577899999874 4689999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCH Q lcl|Aclame:pro 371 ELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKE 450 (945) Q Consensus 371 E~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~ 450 (945) |++++++++||++|||||++||..+++|++|+|++.++|+++||+||+++||+++|++|++..+ ..++|+++.....|. T Consensus 278 e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~-~~~~f~~~~ll~~D~ 356 (454) T protein:vir:93 278 EQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGEN-ESTEFDVTTLLRMDS 356 (454) T ss_pred HHHHHHHHHHHHHhCCCHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-cEEEeechhhhccCH Confidence 9999999999999999999999999999999999999999999999999999999999987543 234555555556799 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 451 RDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 451 kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) ++|++++.+++++|+||+||+|+++|+||+||||.++++.++++.......... ..+..+...+....++..+.+.++ T Consensus 357 ~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) T protein:vir:93 357 ERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAR--EDPFASSGKTASVPQAVAASDGNK 434 (454) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccCccchHhhhccCcc--cCCCCCCccCCCCCCCCCCCCCCC Confidence 999999999999999999999999999999999999999888776542221111 111111222222333445566677 Q ss_pred cccchhHHHHHHHHHHHHhh Q lcl|Aclame:pro 531 SVPSEQKNAGLEVLRNLFKS 550 (945) Q Consensus 531 ~~~se~k~a~~~~lr~~~k~ 550 (945) ..++.+.+++.+.+++.+++ T Consensus 435 ~~~e~~~d~~~~~~~~~~~~ 454 (454) T protein:vir:93 435 AITETEHDAVKAMFRGILKK 454 (454) T ss_pred CccCCccchhhhhhhhhhcC Confidence 77777889999999999888 No 3 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=100.00 E-value=6e-94 Score=531.68 Aligned_cols=428 Identities=12% Similarity=0.090 Sum_probs=324.5 Q ss_pred eeeeeeeeecceeeecccccccccc-ccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHH Q lcl|Aclame:pro 58 VVYSIIIFRKNQVLKKEKIIVPYNH-QEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPK 136 (945) Q Consensus 58 ~~~~~~~~k~n~l~kK~K~i~p~~~-r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~ 136 (945) .+=|+ -+++.+-+...++.. ..-...+++.+ +. ....|-+.....+..++.+.||++++||+||++||+ T Consensus 1 ~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~ 70 (434) T protein:vir:43 1 MSKSL-----GKVLSSATSAPRSSLFGWGGKTIRLTD----GA-FWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLIST 70 (434) T ss_pred Cccch-----hhhhhhcccccchhhhcccccccccCc----hH-HHHHHhcCCccCCceechhhhhccHHHHHHHHHHHH Confidence 00000 011111111000100 00000111111 00 011111122223456788899999999999999999 Q ss_pred hhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEE Q lcl|Aclame:pro 137 KLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVA 215 (945) Q Consensus 137 ~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pve 215 (945) +||++||++|+++.+|. +..+.+||+++||+ +||++||+++||+. ++.+++++||+|+++.++ +|+|++ T Consensus 71 ~ia~lp~~~~~~~~~g~-----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~i~~~-~G~~~~ 140 (434) T protein:vir:43 71 SVAGLPLGVYERKADGS-----RVDARSFPLYDVVHNSPNDDMTAFQFWQA----MVASMLLWGNAYAEIRRA-AGRPAA 140 (434) T ss_pred hhhhCceEEEEEcCCCc-----cccccccHHHHHHhccCCCCCCHHHHHHH----HHHHHhhcCCeEEEEEeC-CCcEEE Confidence 99999999999887764 34567899999996 89999999999876 567778999999887766 799999 Q ss_pred EEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 216 ITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLD 295 (945) Q Consensus 216 L~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~ 295 (945) |+||+|++|++..+.+|...|. +...++....++++||||++.+ +.++ .+|+||+..++++++.+.++++++.+ T Consensus 141 L~~l~p~~v~~~~~~~g~~~y~--~~~~~g~~~~~~~~eVih~~~~-~~dg---~~G~spi~~~~~~i~~~~~~~~~~~~ 214 (434) T protein:vir:43 141 LDFLLPSRVDLECDENGRLKYF--YTTKKGARREIERTNMLHIPAF-TLDG---RIGLSAIRYGVDVFGSVMSAEDAANG 214 (434) T ss_pred EEEEcCcceEEEEcCCCeEEEE--EEecCceEEEEccccEEEecCc-CCCC---ccccCHHHHHHHHHHHHHHHHHHHHH Confidence 9999999999999988876543 3344556788999999999754 3332 36999999999999999999999999 Q ss_pred HHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHH Q lcl|Aclame:pro 296 YYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEF 375 (945) Q Consensus 296 ~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~ 375 (945) +|. ||++|+|+|+++ +.+++++.+++++.|++..++.|+|+++|+++|++|+++++++.|+||++++++ T Consensus 215 ~f~-ng~~~~gil~~~----------~~l~~e~~~~~r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~ 283 (434) T protein:vir:43 215 TFK-NGLLPTVAFKVD----------RILQPAQREEFREYVKSVSGAMNSGRSPVLEQGITPETIGINPVDAQLLETREH 283 (434) T ss_pred HHh-ccCCcceEEecC----------CCCCHHHHHHHHHHHHHhcCccccCCccccCCCceEEEccCChhHHHHHHHHHH Confidence 996 578999999874 468999999999999887777899999999999999999999999999999999 Q ss_pred HHHHHHHHhcCChhhcccccCCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechh--hcCHH Q lcl|Aclame:pro 376 VARKICAVYQVSPQDVGILEGSN--KATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDD--LEKER 451 (945) Q Consensus 376 ~~eeIA~aFGVPP~lLG~~e~gT--~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~--l~D~k 451 (945) ++++||++|||||++||..+.++ ++|+|++...|+++||.||+.+||+++|++|++..+..+++++||... ..|.+ T Consensus 284 ~~~~Ia~~fgVPp~~lg~~~~~~~~~s~~e~~~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~llr~d~~ 363 (434) T protein:vir:43 284 GVIEICRWFGVPPWMIGQTDKGSNWGTGLEQQMLAFLTFSISSITNQIQQCVNKRLLTAPERIRYYAEFSLEGFLKADSA 363 (434) T ss_pred HHHHHHHHhCCCHHHhCCCcCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceEEEechhhhccCHH Confidence 99999999999999999987765 799999999999999999999999999999887665556777777655 46999 Q ss_pred HHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCcc Q lcl|Aclame:pro 452 DWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSS 531 (945) Q Consensus 452 erae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~ 531 (945) +|++++.+++++|+||+||+|+++|+||+||||+++++.|.+++..........+..+...+..+++ T Consensus 364 ~r~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 430 (434) T protein:vir:43 364 GRAAWYSTMAQNGFMTRNEGRRKENLPELPGGDILTVQSNLVPIDQLGQSNKSQAVRAALMNWFSQP------------- 430 (434) T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeeccCccchhhhhccCCCcchhhhhhccCCCC------------- Confidence 9999999999999999999999999999999999999988776543211111111000000000111 Q ss_pred ccch Q lcl|Aclame:pro 532 VPSE 535 (945) Q Consensus 532 ~~se 535 (945) .+.| T Consensus 431 ~~~~ 434 (434) T protein:vir:43 431 EPQE 434 (434) T ss_pred CCCC Confidence 1111 No 4 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=100.00 E-value=7.3e-94 Score=531.19 Aligned_cols=429 Identities=16% Similarity=0.173 Sum_probs=328.0 Q ss_pred ee--cceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCc Q lcl|Aclame:pro 65 FR--KNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKE 142 (945) Q Consensus 65 ~k--~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP 142 (945) -| ++|+|.+.+...- .+-..+++..+... | ..|.+.....+..++.+.|+++++||+||++||++||++| T Consensus 1 ~~~~~~~~~~~~~~~~~---~~~g~~~s~~~~~~--~---~~~~~~~~~~g~~v~~~~al~~~~v~~ci~~Ia~~ia~lp 72 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFL---KWLGVPISLTDGSF--W---SAWGGMGSSSGETVTADSALQLSAVWSCVRLIAETIATLP 72 (437) T ss_pred CCcchhhhhhhhHHhhh---hhcCCcccCCchhH--H---HhhcccccCCCceechHhhhccHHHHHHHHHHHHHHhhCc Confidence 45 5666665543211 11111222211110 1 1122222233456778899999999999999999999999 Q ss_pred eEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 143 LEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 143 ~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) |++|+++.+|. +.+..+|+++.||+ +||++||+++||+. ++.+++++||+|+++.|+ .|++++|||++| T Consensus 73 ~~~~~~~~~g~-----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~i~r~-~g~~~~L~~l~p 142 (437) T protein:vir:10 73 LNLYQTKPDGT-----RVLAKQHRLYTVIHSQPNAENTAAEFWEV----IVASMLLWGNGYARKLRS-AGVLIGLELMLP 142 (437) T ss_pred eeEEEEcCCCc-----eeeccccHHHHHhhccCCcCCCHHHHHHH----HHHHHhhcCCeEEEEEec-CCcEEEEEEEcC Confidence 99999887764 34567899999996 89999999998876 567778999999999999 599999999999 Q ss_pred ceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnG 301 (945) +.|++..+.+|...+.| ...++....++++||||++.+. .++ .+|+||+..++.+++.+.++++++.++|. || T Consensus 143 ~~v~i~~~~~g~~~y~~--~~~~g~~~~~~~~dIih~r~~~-~d~---~~G~spi~~~~~~i~~~~~~~~~~~~~f~-ng 215 (437) T protein:vir:10 143 QRTTVKRLTSGALQYTY--RNVDGTVSTLAEDDVFHVRGFS-LDG---LMGLTPIQYAREVLGNSTAANKTSASVFR-NG 215 (437) T ss_pred cceEEEECCCCeEEEEE--EecCceEEEEccccEEEecCcC-CCC---cccccHHHHHHHHHHHHHHHHHHHHHHHh-cc Confidence 99999998888766543 3334556789999999997543 332 37999999999999999999999999996 57 Q ss_pred CCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKI 380 (945) Q Consensus 302 a~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeI 380 (945) ++|+|||+.+ +.+++++.+++++.|++.++| .|+|+++|+++|++|+++++++.|+||+|++++++++| T Consensus 216 ~~p~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~I 285 (437) T protein:vir:10 216 LRPSGVLSTD----------QILQKEKRAEIRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEI 285 (437) T ss_pred CCccEEEEcC----------CCCCHHHHHHHHHHHHHHhcCccccCcceeccCCceEEeccCChhhHHHHHHHHHHHHHH Confidence 7899999874 468999999999999999988 78999999999999999999999999999999999999 Q ss_pred HHHhcCChhhcccccCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechh--hcCHHHHHHH Q lcl|Aclame:pro 381 CAVYQVSPQDVGILEGSNK--ATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDD--LEKERDWWNI 456 (945) Q Consensus 381 A~aFGVPP~lLG~~e~gT~--SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~--l~D~kerae~ 456 (945) |++|||||++||+.+++++ +|+|++.+.|+++||+||+.+||++++++|++.....+++|+||... ..|.++|+++ T Consensus 286 a~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll~~~e~~~~~~~fd~~~ll~~d~~~r~~~ 365 (437) T protein:vir:10 286 CRWYRVPPFMVGHSEKSTSWGTGIEQQTLGFLTFTLRPWLTRIEQAARRSLLRPGERDQFYAEFSVEGLLRADSAGRAAF 365 (437) T ss_pred HHHhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccCceEEEEechhhhccCHHHHHHH Confidence 9999999999999888765 89999999999999999999999999998877655555666666554 4589999999 Q ss_pred HHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchh Q lcl|Aclame:pro 457 IQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQ 536 (945) Q Consensus 457 ~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~ 536 (945) +++++++|+||+||+|+++|+||++|||..+....+..+.+..... .....++.+..+.+ .++++...+++ T Consensus 366 ~~~~~~~G~~T~NE~R~~~gl~pi~gg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~e 436 (437) T protein:vir:10 366 YSTMTQNGLMTRDECRAKENLPPMGGNAAVLTVQSALLPIDKLGEH-TTATAAQDALKAWL--------YQEEKTRATQE 436 (437) T ss_pred HHHHHhCCCcCHHHHHHHhCCCCCCCCcceEeecCcccchhhccCc-CCCcchhccccccC--------CCCCCCCcccc Confidence 9999999999999999999999999998776544444333221111 10000110001111 11111111111 Q ss_pred H Q lcl|Aclame:pro 537 K 537 (945) Q Consensus 537 k 537 (945) + T Consensus 437 ~ 437 (437) T protein:vir:10 437 R 437 (437) T ss_pred C Confidence 1 No 5 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=100.00 E-value=4.8e-93 Score=526.70 Aligned_cols=419 Identities=15% Similarity=0.193 Sum_probs=325.8 Q ss_pred cCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhh Q lcl|Aclame:pro 38 KDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLF 117 (945) Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~ 117 (945) -.-|.+.--+.-|.=.|+.. ++ .|++.++..|.. .++.. ++.. .....+..++ T Consensus 1 ~~~~~~~~~~~~~~g~~~~~---------~~-~~~~~~~~~~~~-------~~~~~----~~~~------~~~~~~~~v~ 53 (424) T protein:vir:18 1 MEEPKYTIDLRTNNGWWARL---------QS-WFVGGRLVTPNQ-------GSQTG----PVSA------HGHLGDSSIN 53 (424) T ss_pred CCCCcceEeecCCCchHHHH---------Hh-hhcccccccccc-------ccccc----cccc------cccccccccc Confidence 11222221111222223321 01 112222222211 11100 0100 0111234578 Q ss_pred HHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 118 RKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDIL 196 (945) Q Consensus 118 ~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlL 196 (945) .+.|+++++||+||++||++||++||++|++++++.. ++...+||++++|+ +||++||+++||+. ++.+++ T Consensus 54 ~~~al~~~~v~~cv~~Ia~~iA~lp~~~~~~~~~~~~----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~ll 125 (424) T protein:vir:18 54 DERILQISTVWRCVSLISTLTACLPLDVFETDQNDNR----KKVDLSNPLARLLRYSPNQYMTAQEFREA----MTMQLC 125 (424) T ss_pred HHHhhccHHHHHHHHHHHHhhccCceEEEEeecCCce----eeeccccHHHHHHhhccCCCCCHHHHHHH----HHHHHh Confidence 8999999999999999999999999999998887643 23456899999997 89999999999876 567788 Q ss_pred ccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHH Q lcl|Aclame:pro 197 TIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPI 276 (945) Q Consensus 197 l~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI 276 (945) ++||+|+++.|+..|++++|+|++|.+|++..+. +... |.+..+| ....++++||||++... .++ .+|+||+ T Consensus 126 l~Gnay~~i~r~~~G~~~~L~pl~~~~V~v~~~~-~~~~--y~~~~~g-~~~~~~~~eIih~r~~~-~dg---~~G~spi 197 (424) T protein:vir:18 126 FYGNAYALVDRNSAGDVISLLPLQSANMDVKLVG-KKVV--YRYQRDS-EYADFSQKEIFHLKGFG-FTG---LVGLSPI 197 (424) T ss_pred hcCCeEEEEEECCCCcEEEEEEecCcceEEEEcC-CeEE--EEEEeCC-eEEEeccccEEEecCcC-CCC---cccccHH Confidence 9999999999999999999999999999987653 3333 4444444 45689999999997543 332 3799999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCce Q lcl|Aclame:pro 277 EILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFT 356 (945) Q Consensus 277 ~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k 356 (945) ..++++++.+.++++++.++|. ||++|+|||+++. +.+++++++++++.|++.++|.|+|++++|++|++ T Consensus 198 ~~~~~~i~~~~a~~~~~~~~f~-ng~~p~gil~~~~---------~~l~~e~~~~~~~~~~~~~~g~nag~~~vl~~g~~ 267 (424) T protein:vir:18 198 AFACKSAGVAVAMEDQQRDFFA-NGAKSPQILSTGE---------KVLTEQQRSQVEENFKEIAGGPVKKRLWILEAGFS 267 (424) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-ccCCcceEEEeCC---------cCCCHHHHHHHHHHHHHHhCCcccCCceeccCCce Confidence 9999999999999999999996 5778999998753 34789999999999999999889999999999999 Q ss_pred eeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 357 WIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNK--ATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN 434 (945) Q Consensus 357 ~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~--SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~ 434 (945) |+++++++.|+||+|++++++++||++|||||++||+.+++++ +|+|++.+.|+++||+||+++||++||++|++..+ T Consensus 268 ~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~ 347 (424) T protein:vir:18 268 TSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQYTLQPYISRWENSIQRWLIPAKD 347 (424) T ss_pred EEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc Confidence 9999999999999999999999999999999999999988775 89999999999999999999999999999988766 Q ss_pred cceeEEEeechh--hcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccc Q lcl|Aclame:pro 435 EKDIKLWFKEDD--LEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLA 512 (945) Q Consensus 435 ~~g~~f~fd~~~--l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~ 512 (945) ..+++|+||... ..|.++|++++++++++|+||+||+|+++|+||+||||+++++.+.+++.+..... T Consensus 348 ~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGD~~~~~~n~~~l~~~~~~~---------- 417 (424) T protein:vir:18 348 VGRIHAEHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTDNLPPLPGGDVAMRQSQYVPITDLGTNK---------- 417 (424) T ss_pred cCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccCccchHhhhccC---------- Confidence 666777776654 46899999999999999999999999999999999999999998887765321100 Q ss_pred cccCCCCCCCCCC Q lcl|Aclame:pro 513 QAMADQPSQQGGG 525 (945) Q Consensus 513 ~~~~d~~~~~~g~ 525 (945) ++.+++. T Consensus 418 ------~p~~~ga 424 (424) T protein:vir:18 418 ------EPRNNGA 424 (424) T ss_pred ------CCccCCC Confidence 0000000 No 6 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=100.00 E-value=1.8e-92 Score=523.57 Aligned_cols=496 Identities=17% Similarity=0.181 Sum_probs=347.7 Q ss_pred eeeeccccc-cccc-cccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 69 QVLKKEKII-VPYN-HQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIY 146 (945) Q Consensus 69 ~l~kK~K~i-~p~~-~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~Vy 146 (945) -||..-+++ +|.. .+.++. .+.+.+++.....+. ...++....++++++||+||++||++||++||++| T Consensus 1 ~~~~~~~~~~~p~~~e~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~l~ 71 (518) T protein:vir:10 1 MLLANGQTLSAPAMAELSPQM-QDSYYYAPAVGMQLE--------RQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCM 71 (518) T ss_pred CcccCceeecCchhhhhhhhh-hcccccccccceecc--------cccchhhHHHhhhHHHHHHHHHHHHhhccCceEEE Confidence 344433333 3332 222222 122222221111111 11345566789999999999999999999999999 Q ss_pred EeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEE Q lcl|Aclame:pro 147 KHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKP 226 (945) Q Consensus 147 Rrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv 226 (945) +++.++.. +..+|+++.|+.+||++||+++||+. ++.+++++||+|+++.|+..|+|++|+||+|.+|++ T Consensus 72 ~~~~~~~~------~~~~~~~~~Ll~~PN~~~t~~~F~~~----lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v 141 (518) T protein:vir:10 72 FTSGDTET------EESDTGYAKLLADPCEYLDPFAFWEW----VASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAI 141 (518) T ss_pred EEcCCCce------eccchHHHHHHcCCCCCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEE Confidence 98877642 34678888888999999999999876 466778999999999999999999999999999999 Q ss_pred EEcCCCceEEEEEEee-C--CceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 227 ILSEDTGIVVGYVQEV-D--GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSI 303 (945) Q Consensus 227 ~~d~dG~~~~~Yv~~~-d--G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~ 303 (945) ..+.++.... |++.. . ++....++++||||++.+. +++. .+|+||+..++++++.+.++++++.++|. ||++ T Consensus 142 ~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~eViHir~~s-~dg~--~~G~spi~~a~~~i~~~~a~~~~~~~~f~-ng~~ 216 (518) T protein:vir:10 142 KRNSRTGRYE-YYFQAGAGVGTQLVSFADDEVVPIRFFN-PDGL--ERGLSLMESLKSTIFSEDSSRNATAAMWK-NAGR 216 (518) T ss_pred EEcCCCCEEE-EEEEecCCccceEEEecCCcEEEecCCC-CCcc--cccccHHHHHHHHHHHHHHHHHHHHHHHh-cCCC Confidence 9887654432 33222 2 3345678999999997543 3332 26999999999999999999999999996 5778 Q ss_pred ceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 PEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICA 382 (945) Q Consensus 304 PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~ 382 (945) |+|||+.+ +.+++++++++++.|++.++| .|+|+++||++|++|+++++++.|+||+|++++++++||+ T Consensus 217 p~gil~~~----------~~ls~e~~~~~k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~ 286 (518) T protein:vir:10 217 PNLVLRHE----------KRLSEAAQQRLREQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCG 286 (518) T ss_pred ccEEEecC----------CCCCHHHHHHHHHHHHHHhcCccccCcceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHH Confidence 99999874 468999999999999999998 6999999999999999999999999999999999999999 Q ss_pred HhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEee--chhhcCHHHHHHHHHHH Q lcl|Aclame:pro 383 VYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFK--EDDLEKERDWWNIIQGQ 460 (945) Q Consensus 383 aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd--~~~l~D~kerae~~~~~ 460 (945) +|||||++||+.+++|++|+|++...|+++||+||+++||+++|++|++.... +++++|+ .....|.++++++++++ T Consensus 287 afgVPp~~lg~~~~~t~sn~eq~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~-~~~~~fd~~~llr~D~~~r~~~~~~~ 365 (518) T protein:vir:10 287 VYDIAPPIVHILDRATFSNISAQMRAFYRDTMAIPIARIQSAMDKYVGQYWVR-KNRMKFDIDDVIQPDWEAKSESTQKM 365 (518) T ss_pred HhCCCHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CceEEEechhhhccCHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999998876543 3455555 45557999999999999 Q ss_pred HhCCCcCHHHHHHHHhCCCCC--Cccccccccccccccccchhh---cc-CCCCcccccccC---CCCCCCCCCC--CCC Q lcl|Aclame:pro 461 LNTGFRSINEARMEKGLEPVP--WGDVPFSGLRNWKPEDEQAKA---QQ-GAMPPQLAQAMA---DQPSQQGGGV--DEN 529 (945) Q Consensus 461 v~~GimT~NEaRe~lGlpPve--GGD~~l~~~n~~~ped~~a~~---~~-~a~~~~~~~~~~---d~~~~~~g~~--dd~ 529 (945) +++|++|+||+|+++|+||++ |||.++++.+.+++....... +. .+.+++.+.+.+ +.+.+..++. +.. T Consensus 366 ~~~G~lT~NE~R~~~Gl~pie~~~gD~~~~~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (518) T protein:vir:10 366 VNSGVATPNEGREIMGLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPTSVPGLSPTNS 445 (518) T ss_pred HhCCCcCHHHHHHHhCCCCCCCCCCCeeeecccceecccccccccCCCCCCCCCCCCccccccccccccccCCCCCcccc Confidence 999999999999999999996 899999888777654322111 11 111111111000 0000100000 111 Q ss_pred ccccchhHHHHH-HHHHHHHhhhhhhhhHHHH-HhhccCCcc-ccccchHHHHHHHHhhhhHHHHHhhhhhhhcccccCC Q lcl|Aclame:pro 530 SSVPSEQKNAGL-EVLRNLFKSLDANASENLK-QVIELTNDD-NYLKEKELLTRVLKSVGLDSVSEFIENNSQTDVEVSA 606 (945) Q Consensus 530 e~~~se~k~a~~-~~lr~~~k~l~a~~~~~~~-~~~dl~n~~-~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (945) ....+..++... .+.+---++...+....++ -++..+.++ .-||..++|-.-|++.-+ + |+++-+ -+ T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~-----~~ 515 (518) T protein:vir:10 446 DRSTDSGKTEPRRLMQKPPPKESSPKHLRAVKGAMGRGKDIKGFALQLAEKYPDDLEDILL---A--VQLALA-----ER 515 (518) T ss_pred cccccccccchhccccCCCcccccchHHHHHHHHhhcCccchhHhhhhhhhcchhHHHHHH---H--HHHhhh-----hc Confidence 111111111111 1111111111111122222 122233333 557888888877776643 2 332222 22 Q ss_pred Ccc Q lcl|Aclame:pro 607 KDI 609 (945) Q Consensus 607 ~~~ 609 (945) ||. T Consensus 516 ~~~ 518 (518) T protein:vir:10 516 KDN 518 (518) T ss_pred cCC Confidence 222 No 7 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=100.00 E-value=5.6e-93 Score=526.34 Aligned_cols=417 Identities=12% Similarity=0.126 Sum_probs=329.1 Q ss_pred eeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 64 IFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKEL 143 (945) Q Consensus 64 ~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~ 143 (945) .|-..++.++++. +... ..+. .+. ...++ +....+..++.+.|+++++||+||++||++||++|| T Consensus 1 m~~~~~~~~~~~~-~s~~---~~w~-~~~-------~~~~~---~~~~~g~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~ 65 (421) T protein:vir:10 1 MFIPQMFEGKKRS-VSGG---GFWE-AML-------GGVRS---SHSKAGVMITPETALALSAVRACVTLLAESVAQLPV 65 (421) T ss_pred CCCcchhcccccc-cCcc---hhhH-HHh-------hhhcc---CcccCCceechHHhhccHHHHHHHHHHHHhhccCce Confidence 5545554344332 2211 0000 010 01111 111224567889999999999999999999999999 Q ss_pred EEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCc Q lcl|Aclame:pro 144 EIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGT 222 (945) Q Consensus 144 ~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs 222 (945) ++|++++++. +++..+||+++||+ +|||+||+++||+. ++.+++++|++|+++.|+..|+|++||||+|+ T Consensus 66 ~~~~~~~~g~-----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~ 136 (421) T protein:vir:10 66 ELYRRDKNGG-----RQRATDHPIYDLIHSQPNKKDTSFEYFEQ----QQGLLGLEGNCYSIIDRDGKGYPKELIPINPK 136 (421) T ss_pred EEEEEcCCCc-----eeecccchHHHHHhhcccCCCCHHHHHHH----HHHHHhhcCCeEEEEEEcCCCcEEEEEEecCc Confidence 9999988765 34567899999996 89999999999876 56788899999999999999999999999999 Q ss_pred eeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 223 TIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGS 302 (945) Q Consensus 223 ~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa 302 (945) +|++..+++|..++ .....| ..++++||+|++.+. .+ +.+|+||+..++++++.+.++++++.++|. ||+ T Consensus 137 ~v~v~~~~~g~~~y--~~~~~g---~~~~~~eiih~~~~~-~d---~~~G~spi~~~~~~i~~~~~~~~~~~~~f~-ng~ 206 (421) T protein:vir:10 137 KVIVLKGPDGMPYY--EIPEIG---ETLPMRMMHHVKVFS-LD---GYIGSSPIQTNADVLGLNLAVEEHASAVFR-RGA 206 (421) T ss_pred eEEEEECCCceEEE--EEcCCC---cEEchhhEEEecCcC-CC---CcccccHHHHHHHHHHHHHHHHHHHHHHHh-cCC Confidence 99999998876543 222333 257899999987653 33 237999999999999999999999999996 577 Q ss_pred CceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 303 IPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKIC 381 (945) Q Consensus 303 ~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA 381 (945) +|+|||+.+.. .++.+++++++++++.|++.++| +|+++++++++|++|+++++++.|+||+|++++++++|| T Consensus 207 ~~~gil~~~~~------~~~~~~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia 280 (421) T protein:vir:10 207 TMSGVIERPKE------APAIKSQEKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVC 280 (421) T ss_pred CccEEEEecCc------cCccCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHH Confidence 89999988642 24567999999999999999988 689999999999999999999999999999999999999 Q ss_pred HHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhh--cCHHHHHHHHHH Q lcl|Aclame:pro 382 AVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDL--EKERDWWNIIQG 459 (945) Q Consensus 382 ~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l--~D~kerae~~~~ 459 (945) ++|||||++||+.+++|++|+|++.+.|+++||+||+++||++||++|++.....+++++|+...+ .|.+++++++++ T Consensus 281 ~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~~~~~v~fd~~~l~~~d~~~~~~~~~~ 360 (421) T protein:vir:10 281 RLYKIPPHMVQMLAKATNNNIEHQGLQFVMYTLLAWLKRHEGALQRDLLLPSERRDLYIEFNVSGLLRGDQKSRYESYAL 360 (421) T ss_pred HHhCCCHHHcCCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHH Confidence 999999999999999999999999999999999999999999999988776555666677766554 699999999999 Q ss_pred HHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCcccc Q lcl|Aclame:pro 460 QLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVP 533 (945) Q Consensus 460 ~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~ 533 (945) ++++|+||+||+|+++|+||+||||.++++.+..+..+.. .+ + ..+.++.+++.|+....+ T Consensus 361 ~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~-~~--~----------~~~~~~~~~e~d~~~~~~ 421 (421) T protein:vir:10 361 GRQWGWLSVNDIRRMENLPPIAGGDKYLTPLNMVDSAQII-PG--D----------KKPTAQQMAEIDTILSRT 421 (421) T ss_pred HHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccc-cC--C----------CCcccccCcccccccccC Confidence 9999999999999999999999999999887755332211 00 0 011111111122211111 No 8 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=100.00 E-value=7.1e-92 Score=520.28 Aligned_cols=494 Identities=17% Similarity=0.183 Sum_probs=346.0 Q ss_pred eeeeccccc-cccc-cccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 69 QVLKKEKII-VPYN-HQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIY 146 (945) Q Consensus 69 ~l~kK~K~i-~p~~-~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~Vy 146 (945) -||..-+++ .|.. .+.+...- .+.+.+.....+ + ...++....++++++||+||++||++||++||++| T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~g~~~------~--~~~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~ 71 (518) T protein:vir:78 1 MLLANGQTLSAPAMAELSPQMQD-SYYYAPAVGMQL------E--RQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCM 71 (518) T ss_pred CcccCceeeccchhhhhhhhhhh-cccccceeceec------c--cccchhhHHhhhhHHHHHHHHHHHHhhccCceEEE Confidence 333333322 2221 12222111 111111111000 0 12355567789999999999999999999999999 Q ss_pred EeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEE Q lcl|Aclame:pro 147 KHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKP 226 (945) Q Consensus 147 Rrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv 226 (945) +++.++. .+..+|+++.|+.+||++||+++||+. ++.++++.||+|+++.|+..|++++||||+|++|++ T Consensus 72 ~~~~~~~------~~~~~~~~~~Ll~~PN~~~t~~~F~~~----lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv 141 (518) T protein:vir:78 72 FTSGDTE------TEEHDTGYAKLLADPCEYLDPFAFWEW----VASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAI 141 (518) T ss_pred EEcCCcc------ccccchHHHHHHhCCCCCCCHHHHHHH----HHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEE Confidence 9877653 234568888888899999999999877 466778999999999999999999999999999999 Q ss_pred EEcCCCceEEEEEEeeC--CceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc Q lcl|Aclame:pro 227 ILSEDTGIVVGYVQEVD--GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIP 304 (945) Q Consensus 227 ~~d~dG~~~~~Yv~~~d--G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~P 304 (945) ..+.++....+++.... ++....++++||||++.+. +++. .+|+||+.++++.++.+.+++++++++|. ||++| T Consensus 142 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eIiHir~~~-~dg~--~~G~Spi~~~~~~i~~~~aa~~~~~~~f~-Ng~~p 217 (518) T protein:vir:78 142 KRNSRTGRYEYYFQAGAGVGTQLVSFADDEVVPIRFFN-PDGL--ERGLSLMESLKSTIFSEDSSRNATAAMWK-NAGRP 217 (518) T ss_pred EEcCCCCEEEEEEEecCCccceeEEecCCcEEEecCCC-CCcc--cccccHHHHHHHHHHHHHHHHHHHHHHHh-cCCCc Confidence 98876544332222222 3455679999999997543 3332 26999999999999999999999999996 57789 Q ss_pred eEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 305 EGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAV 383 (945) Q Consensus 305 sGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~a 383 (945) +|||+++ +.+++++++++++.|++.++| .|+|++++|++|++|+++++++.|+||+|++++++++||++ T Consensus 218 ~gvl~~~----------~~ls~e~~~~~k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~a 287 (518) T protein:vir:78 218 NLVLRHE----------KRLSPEAQQRLREQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGV 287 (518) T ss_pred cEEEecC----------CCCCHHHHHHHHHHHHHHhcCcccCCceeEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHH Confidence 9999874 468999999999999999998 68999999999999999999999999999999999999999 Q ss_pred hcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEee--chhhcCHHHHHHHHHHHH Q lcl|Aclame:pro 384 YQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFK--EDDLEKERDWWNIIQGQL 461 (945) Q Consensus 384 FGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd--~~~l~D~kerae~~~~~v 461 (945) |||||++||+.+++|++|+|++...|+++||+||+.+||+++|++|++.... +++++|+ .....|.++|++++.+++ T Consensus 288 fgVPp~~lg~~~~st~sn~e~~~~~f~~~tL~P~~~~ie~eln~~L~~~~~~-~~~~~fd~~~Llr~D~~~r~~~~~~~~ 366 (518) T protein:vir:78 288 YDIAPPIVHILDRATFSNISAQMRAFYRDTMAIPIARIQSAMDKYVGQYWVR-KNRMKFDIDDVIQPDWEAKSESTQKMV 366 (518) T ss_pred hCCCHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-cceEEeechhhhccCHHHHHHHHHHHH Confidence 9999999999999999999999999999999999999999999998876543 3455555 555679999999999999 Q ss_pred hCCCcCHHHHHHHHhCCCCC--Cccccccccccccccccchhh---c-cCCCCcccccccC---CCCCCCCCC--CCCCc Q lcl|Aclame:pro 462 NTGFRSINEARMEKGLEPVP--WGDVPFSGLRNWKPEDEQAKA---Q-QGAMPPQLAQAMA---DQPSQQGGG--VDENS 530 (945) Q Consensus 462 ~~GimT~NEaRe~lGlpPve--GGD~~l~~~n~~~ped~~a~~---~-~~a~~~~~~~~~~---d~~~~~~g~--~dd~e 530 (945) ++|+||+||+|+++|+||++ |||.++++.+.+++....... + ..+.+++.+.... +.+.+...+ .+... T Consensus 367 ~~G~lT~NE~R~~~gl~pie~~~gD~~~v~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518) T protein:vir:78 367 NSGVATPNEGREIMGLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPASVPGLSPTNSD 446 (518) T ss_pred hCCCcCHHHHHHHhCCCCCCCCCCceeeecccceecccccccccCCCCCCCCCCCCcccccccccCccccCCCCCccccc Confidence 99999999999999999997 899999888776654321111 1 1111111111000 000010110 11111 Q ss_pred cccchhHHHHHHHHHHHHhhhhhh----hhHHHH-HhhccCCcc-ccccchHHHHHHHHhhhhHHHHHhhhhhhhccccc Q lcl|Aclame:pro 531 SVPSEQKNAGLEVLRNLFKSLDAN----ASENLK-QVIELTNDD-NYLKEKELLTRVLKSVGLDSVSEFIENNSQTDVEV 604 (945) Q Consensus 531 ~~~se~k~a~~~~lr~~~k~l~a~----~~~~~~-~~~dl~n~~-~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (945) ...+.+++..... +.+.+..+ ....++ -++..+.++ .-||..++|-.-|++.-+ + |+++-+ T Consensus 447 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~----- 513 (518) T protein:vir:78 447 RSTDSGKTEPRRL---MQKPPPKESSPKHLRAVKGAMGRGKDIKGFALQLAEKYPDDLEDILL---A--VQLALA----- 513 (518) T ss_pred ccccccccchhcc---cCCCCcccccchHHHHHHHHhhcCCcchhhhhhhhhhcchhHHHHHH---H--HHHhhh----- Confidence 1122222211110 11111111 111122 122233333 557788888777776643 2 332222 Q ss_pred CCCcc Q lcl|Aclame:pro 605 SAKDI 609 (945) Q Consensus 605 ~~~~~ 609 (945) -+||. T Consensus 514 ~~~~~ 518 (518) T protein:vir:78 514 ERKDN 518 (518) T ss_pred hccCC Confidence 22222 No 9 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=100.00 E-value=2.7e-92 Score=522.57 Aligned_cols=415 Identities=13% Similarity=0.121 Sum_probs=325.4 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .+|++ +||+..... +... +..+..+ .......+..++.+.||++++||+||++||++||++ T Consensus 1 m~~~~---~~~~~~~~~----~~~~------~~~~~~~------~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~ia~l 61 (419) T protein:vir:57 1 MFIPQ---FWKGRPSEN----RVNW------QVVPGGM------RSSSSQAGVIITPETALALSAVRACVTLLAESVAQL 61 (419) T ss_pred Ccchh---hhccCCccc----cccc------ccccccc------ccccccCCceechHHhhccHHHHHHHHHHHHhhccC Confidence 23332 223322111 1111 0011111 112222345677888999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|+++++|. ++...+|++++||+ +|||+||+++||+. ++.+++++|++|++++|+..|++++|+||+ T Consensus 62 p~~~~~~~~~g~-----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~ 132 (419) T protein:vir:57 62 PCVLYRRTENGG-----REIAFDHPLHDLIRYQPNRKDTAFEYHEQ----TQGVLGLEGNSYSLIDRNGRGDITELIPIN 132 (419) T ss_pred ceEEEEEcCCCc-----eeccccchHHHHHhhccccCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEEEEc Confidence 999999988865 33567899999996 89999999999776 577889999999999999999999999999 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) |++|++..+.+|..++ .+...| ..++.++|+|++.+. .+ +.+|+||+..++.+++.+.++++++.++|. | T Consensus 133 ~~~v~v~~~~~g~~~y--~~~~~~---~~~~~~~vih~r~~~-~d---~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~-n 202 (419) T protein:vir:57 133 PHKVIVLKGPDGMPYY--DIPSIG---EILPMRMVHHIKSFS-LD---GYIGTSPIQTNPDVLGLGIAVEQHAAQVFA-R 202 (419) T ss_pred CcceEEEECCCceEEE--EEcCCc---eEEchhhEEEecCcC-CC---CcccccHHHHHHHHHHHHHHHHHHHHHHHH-c Confidence 9999999988876443 222222 468899999997543 33 247999999999999999999999999996 5 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARK 379 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ee 379 (945) |++|+|||+.+.. .++.++++++++++++|.+.++| .|+|+++++++|++|++++++++|+||+|++++++++ T Consensus 203 g~~p~gil~~~~~------~~~~~~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~ 276 (419) T protein:vir:57 203 GTTMSGVIERPFE------AKAIASQAAVDAILAKWTERYGGVRNAFSVGMLQEGMTYKQLSQDNEKAQLLQSRQYTVNE 276 (419) T ss_pred cCCccEEEEecCc------CCcccCHHHHHHHHHHHHHHhccccccccceecCCCceEEEcCCChhhHHHHHHHHHHHHH Confidence 6789999987642 24568999999999999999988 6899999999999999999999999999999999999 Q ss_pred HHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechh--hcCHHHHHHHH Q lcl|Aclame:pro 380 ICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDD--LEKERDWWNII 457 (945) Q Consensus 380 IA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~--l~D~kerae~~ 457 (945) ||++|||||++||..+++|++|+|++.++|+++||+|++++||+++|++|++.....+++++|+... ..|+++|++++ T Consensus 277 Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~i~fd~~~ll~~d~~~~~~~~ 356 (419) T protein:vir:57 277 VCRLYKVPPHMIQDLQKSTNNNIEHQGLQYVIYTMLAILKRHESAMMRDLLLPSERRDFYIEFNVSSLLRGDQKSRYESY 356 (419) T ss_pred HHHHhCCCHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccCCeEEEEechhhhccCHHHHHHHH Confidence 9999999999999999999999999999999999999999999999998876655567777777655 46999999999 Q ss_pred HHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCC Q lcl|Aclame:pro 458 QGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDEN 529 (945) Q Consensus 458 ~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~ 529 (945) ++++++|+||+||+|+++|+||+||||+++++++.++... ....+.+.|.+.++..+.. ...+ T Consensus 357 ~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~ 419 (419) T protein:vir:57 357 ALGRQWGWLSVNDIRRMENLTPIPGGDKYLTPLNMVDSKA--LTGIGKATPQQLKDIEAIL-------CTRN 419 (419) T ss_pred HHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccccccccc--cccccCCCcccCcchhhhh-------hccC Confidence 9999999999999999999999999999999887543221 1111111111111111100 0001 No 10 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=100.00 E-value=1e-91 Score=519.37 Aligned_cols=418 Identities=12% Similarity=0.131 Sum_probs=319.9 Q ss_pred hhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhcc Q lcl|Aclame:pro 45 PLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNN 124 (945) Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~n 124 (945) -|..+-+.-|-.-.++.+ -++||++.....|.. | .++..+. ..+... ....++.+.||++ T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~lf~~~~~~~~~~----~-------~~~~~~~-~~~~~~----~~~~vs~~~al~~ 60 (424) T protein:vir:45 1 MLYCWWAHWLWPEGGRVL----LDALFRSKSLENPST----P-------ITGDAVD-TDGLFR----ADVYVSPETAMKL 60 (424) T ss_pred CeeEeeeceecCcchhHH----HHhhccccCCCCCcc----c-------cchhhhh-hhcccc----CCceechHHhhcc Confidence 111111111111111111 134555432211111 1 0111110 001111 1234677889999 Q ss_pred HHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEE Q lcl|Aclame:pro 125 DSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAI 203 (945) Q Consensus 125 saV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i 203 (945) ++||+||++||++||++||++||++.++ ++++.+||+++||+ +|||+||+++||+. ++.++++.||+|+ T Consensus 61 ~~v~~cv~~Ia~~iA~lp~~v~~~~~~~------~~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~v~~lll~Gna~~ 130 (424) T protein:vir:45 61 AAVYSCIYVLSSSLAQMPLHVMRRHKGK------VEPARDHPAFYLVHDEPNTWQTSYKWREL----KQRHILGWGNGYT 130 (424) T ss_pred HHHHHHHHHHHHHHhhCceEEEEecCCc------eeecccchHHHHHHhhcccCCCHHHHHHH----HHHHHhhcCCeEE Confidence 9999999999999999999999875433 33567899999996 89999999999876 5677889999999 Q ss_pred EEEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHH Q lcl|Aclame:pro 204 VKIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVI 283 (945) Q Consensus 204 ~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I 283 (945) ++.|+..|++++|+|++|+.|++..+. +...| .....++ ...++++||||++.. +.+ +.+|+||+..++++| T Consensus 131 ~i~r~~~G~~~~L~~l~~~~v~i~~~~-~~~~y--~~~~~~~-~~~~~~~eVih~r~~-~~d---~~~G~spi~~~~~~i 202 (424) T protein:vir:45 131 WVKRNRRGEVISLDCCMPWETTLMNTG-GRYTY--GLYNEYG-AFAISPDDMIHIRAL-GNN---QKMGLSPIMQHAETI 202 (424) T ss_pred EEEEcCCCcEEEEEEecCceEEEEEcC-CeEEE--EEEecCc-eEEECcccEEEecCc-CCC---CcccccHHHHHHHHH Confidence 999999999999999999999987543 44443 3333333 457999999999854 333 247999999999999 Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC--cccCcccccCCCceeeecc Q lcl|Aclame:pro 284 LSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG--DYTQVPILSGGKFTWIDFK 361 (945) Q Consensus 284 ~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG--~Nagkp~VL~~G~k~~pLs 361 (945) +.+.+++++++++|. ||++|+|||+++ +.+++++++++++.|++.++| +|+|+++++++|++|++++ T Consensus 203 ~~~~~~~~~~~~~f~-ng~~p~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~~~n~g~~~vl~~g~~~~~l~ 271 (424) T protein:vir:45 203 GMGMSGQKYTESFFS-GNARPAGIVSVK----------SGLNKESWGWLKDQWQKASQALRRQENKTMLLPADLDYKALT 271 (424) T ss_pred HHHHHHHHHHHHHHh-ccCCccEEEEeC----------CCCCHHHHHHHHHHHHHHhccccccCCceeEcCCCceEEEcc Confidence 999999999999995 678999999875 358999999999999999987 5899999999999999999 Q ss_pred CChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeEE Q lcl|Aclame:pro 362 GKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-NEKDIKL 440 (945) Q Consensus 362 ~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-~~~g~~f 440 (945) +++.|+||+|++++++++||++|||||++||+.+++|++|+|++.++|+++||+||+++||+++|++|++.. ...++++ T Consensus 272 ~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~kLl~~~e~~~g~~i 351 (424) T protein:vir:45 272 VSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKATFSNISAQAIQFVRYTMMPWVTNWEQELNRRLFTRAELAAGYYV 351 (424) T ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCcEE Confidence 999999999999999999999999999999999999999999999999999999999999999999887654 3445667 Q ss_pred Eeechhh--cCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCC Q lcl|Aclame:pro 441 WFKEDDL--EKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQ 518 (945) Q Consensus 441 ~fd~~~l--~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~ 518 (945) +|+...+ .|.++|++++++++++|+||+||+|+++|+||+||||.++++.|..++.+.. .+ T Consensus 352 ~fd~~~llr~d~~~r~~~~~~~~~~g~~T~NE~R~~~gl~pi~ggD~~~~~~n~~~~~~~~-----------------~~ 414 (424) T protein:vir:45 352 RFNLTGLLRGTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEGLDEMLVSVNAANPAGDF-----------------KP 414 (424) T ss_pred EeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccc-----------------CC Confidence 7665554 6999999999999999999999999999999999999999988765432211 01 Q ss_pred CCCCCCCCCC Q lcl|Aclame:pro 519 PSQQGGGVDE 528 (945) Q Consensus 519 ~~~~~g~~dd 528 (945) +..+.+.+++ T Consensus 415 ~~~~~~~~~~ 424 (424) T protein:vir:45 415 PKNDEGKTNE 424 (424) T ss_pred CCCCCCCCCC Confidence 1111111111 No 11 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=100.00 E-value=1.1e-91 Score=519.15 Aligned_cols=419 Identities=15% Similarity=0.202 Sum_probs=328.3 Q ss_pred cCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhh Q lcl|Aclame:pro 38 KDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLF 117 (945) Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~ 117 (945) -.-|.+.--+.-|+-.|+.. |++ |++++...+... ... .++ +..+......++ T Consensus 1 ~~~~~~~~~~~~~~g~~~~~---------~~~-f~~~~~~~~~~~-------~~~----~~~------~~~~~~~~~~v~ 53 (424) T protein:vir:18 1 MEEPKYTIDLRTNNGWWARL---------KSW-FVGGRLVTPNQG-------SQT----GPV------SAHGYLGDSSIN 53 (424) T ss_pred CCCCccccccCCCCchHHHH---------Hhh-ccccccccccch-------hhc----ccc------cccccccccccc Confidence 22233322222333345431 222 333333222210 000 000 001111223577 Q ss_pred HHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 118 RKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDIL 196 (945) Q Consensus 118 ~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlL 196 (945) .+.|+++++||+||++||++||++|+++|++++++.. ++...+||+++||+ +||++||+++||+. ++.+++ T Consensus 54 ~~~al~~~~v~~cv~~Ia~~iA~lp~~vy~~~~~~~~----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~ll 125 (424) T protein:vir:18 54 DERILQISTVWRCVSLISTLTACLPLDVFETDQNDNR----KKVDLSNPLARLLRYSPNQYMTAQEFREA----MTMQLC 125 (424) T ss_pred HHHhhccHHHHHHHHHHHHhhccCceEEEEeccCCce----eeeccccHHHHHHhhccCCCCCHHHHHHH----HHHHHh Confidence 8899999999999999999999999999998887643 23446899999997 89999999999876 577889 Q ss_pred ccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHH Q lcl|Aclame:pro 197 TIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPI 276 (945) Q Consensus 197 l~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI 276 (945) ++|++|+++.|+..|++++|+|++|.+|++..+. +... |.+..+| ....++++||||++.. +.++ .+|+||+ T Consensus 126 l~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~-~~~~--y~~~~~g-~~~~~~~~eVihir~~-~~dg---~~G~spi 197 (424) T protein:vir:18 126 FYGNAYALVDRNSAGDVISLLPLQSANMDVKLVG-KKVV--YRYQRDS-EYADFSQKEIFHLKGF-GFTG---LVGLSPI 197 (424) T ss_pred hcCCeEEEEEECCCCcEEEEEEecCcceEEEEcC-CeEE--EEEEeCC-eEEEeccccEEEecCc-CCCC---cccccHH Confidence 9999999999999999999999999999987653 3333 4444444 4567999999999754 3332 3699999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCce Q lcl|Aclame:pro 277 EILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFT 356 (945) Q Consensus 277 ~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k 356 (945) ..+++.++.+.++++++.++|. ||++|+|+|+++. ..+++++++++++.|++.++|.|+|+++++++|++ T Consensus 198 ~~~~~~i~~~~~~~~~~~~~f~-ng~~~~gil~~~~---------~~l~~e~~~~~~~~~~~~~~~~nag~~~vl~~g~~ 267 (424) T protein:vir:18 198 AFACKSAGVAVAMEDQQRDFFA-NGAKSPQILSTGE---------KVLTEQQRSQVEENFKEIAGGPVKKRLWILEAGFS 267 (424) T ss_pred HHHHHHHHHHHHHHHHHHHHHh-ccCCcceEEEeCC---------cCCCHHHHHHHHHHHHHHhCCcccCCceeccCCce Confidence 9999999999999999999996 5778999998753 24789999999999999998889999999999999 Q ss_pred eeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 357 WIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNK--ATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN 434 (945) Q Consensus 357 ~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~--SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~ 434 (945) |+++++++.|+||+|++++++++||++|||||++||+.+++++ +|+|++..+|+++||.||+++||+++|++|++..+ T Consensus 268 ~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~ 347 (424) T protein:vir:18 268 TSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQYTLQPYISRWENSIQRWLIPSKD 347 (424) T ss_pred EEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc Confidence 9999999999999999999999999999999999999988776 89999999999999999999999999999987766 Q ss_pred cceeEEEeechh--hcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccc Q lcl|Aclame:pro 435 EKDIKLWFKEDD--LEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLA 512 (945) Q Consensus 435 ~~g~~f~fd~~~--l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~ 512 (945) ..+++++||... ..|.++|++++++++++|+||+||+|+++|+||+||||+++++.+.+++.+..... T Consensus 348 ~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~~~~n~~~l~~~~~~~---------- 417 (424) T protein:vir:18 348 VGRLHAEHNLDGLLRGDSASRAAFMKAMGESGLRTINEMRRTDNMPPLPGGDVAMRQAQYVPITDLGTNK---------- 417 (424) T ss_pred cCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccCccchhhhhccC---------- Confidence 566777776554 46899999999999999999999999999999999999999998887764321100 Q ss_pred cccCCCCCCCCCC Q lcl|Aclame:pro 513 QAMADQPSQQGGG 525 (945) Q Consensus 513 ~~~~d~~~~~~g~ 525 (945) ++.+++. T Consensus 418 ------~~~~n~a 424 (424) T protein:vir:18 418 ------EPRNNGA 424 (424) T ss_pred ------CccccCC Confidence 0000000 No 12 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=100.00 E-value=2e-91 Score=517.85 Aligned_cols=415 Identities=14% Similarity=0.118 Sum_probs=321.3 Q ss_pred eeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCc Q lcl|Aclame:pro 63 IIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKE 142 (945) Q Consensus 63 ~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP 142 (945) ..|+|-..-++... .+ ++.+|... -+..+...++..++.+.||++++||+||++||++||++| T Consensus 1 ~~~~r~~~~~~~~~-~~---------------~~~~~~~~-~~g~~~s~~~~~vt~~~al~~~~v~~~v~~ia~~iA~lp 63 (419) T protein:vir:14 1 MFFSRQLLSNLGQT-QM---------------SAGGWVSA-LLGSSRSDSGQVVTPASALALTVLQNCVTLLAESIAQLP 63 (419) T ss_pred Cccccccccccccc-cc---------------CcchhhHH-hhcCCCccCCcccchHHhhccHHHHHHHHHHHHhhccCc Confidence 33333221111110 00 01111100 000111123456778899999999999999999999999 Q ss_pred eEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 143 LEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 143 ~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) |++|++++++. .+..+||+++||+ +|||+||+++||+. ++.+++++||+|+++.|+.+|+|++|||++| T Consensus 64 ~~~~~~~~~~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~ 133 (419) T protein:vir:14 64 IELYERSGEDR------KPATDHPLYSILKYEPNSWQTPFEYQEQ----SQVAVGLRGNSYSFIDRDSDGVIQGLYPLDN 133 (419) T ss_pred eEEEEecCCcc------ccccccHHHHHHHhhcccCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEEEecC Confidence 99999876653 3567899999997 89999999999776 5777889999999999999999999999999 Q ss_pred ceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnG 301 (945) .+|++..+.+|...+.+. +. ..++.++|+|++.+.. ++ .+|+||+..++++++.+.++++++.++|. || T Consensus 134 ~~v~v~~~~~~~~~y~~~----~~--~~~~~~~i~h~~~~~~-dg---~~G~s~i~~~~~~i~~~~~~~~~~~~~f~-ng 202 (419) T protein:vir:14 134 EAVTVMRGSDLKPVYRVR----GS--DPMPQRLVHHVRWMSI-NG---YTGLSPVLLHANAIGHAQAIQQYAGKSFM-NG 202 (419) T ss_pred ceEEEEECCCceEEEEEc----cC--cccchhheeEecCcCC-CC---cccccHHHHHHHHHHHHHHHHHHHHHHHh-cc Confidence 999999988886554332 21 2367788888765432 22 37999999999999999999999999996 57 Q ss_pred CCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKI 380 (945) Q Consensus 302 a~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeI 380 (945) ++|+|||+.++. .+...++++++++++.|++.++| +|+|+++++++|++|+++++++.|+||+|++++++++| T Consensus 203 ~~p~gil~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~I 276 (419) T protein:vir:14 203 TALSGVIERPKD------APALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDI 276 (419) T ss_pred CCccEEEEecCC------CCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHH Confidence 789999998642 23456799999999999999998 68899999999999999999999999999999999999 Q ss_pred HHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhh--cCHHHHHHHHH Q lcl|Aclame:pro 381 CAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDL--EKERDWWNIIQ 458 (945) Q Consensus 381 A~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l--~D~kerae~~~ 458 (945) |++|||||++||..+++|++|+|++.+.|+++||.||+++||++||++|++.....+++++|+...+ .|.++|+++++ T Consensus 277 a~~fgVpp~~lg~~~~~t~s~~E~~~~~f~~~~L~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~r~d~~~~~~~~~ 356 (419) T protein:vir:14 277 ARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYA 356 (419) T ss_pred HHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHH Confidence 9999999999999999999999999999999999999999999999988766555677777776554 68999999999 Q ss_pred HHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccc Q lcl|Aclame:pro 459 GQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPS 534 (945) Q Consensus 459 ~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~s 534 (945) +++++|++|+||+|+++|+||+||||.++++.+.++...... . + ...+.+..++.++....-+ T Consensus 357 ~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~---~---~-------~~~~~~~~~~~~e~~~~l~ 419 (419) T protein:vir:14 357 VGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQQ---L---P-------VGKSEPTKAAIDEIGRILS 419 (419) T ss_pred HHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccccccccccc---c---c-------CCCCCCccccccchhcccC Confidence 999999999999999999999999999998876554322110 0 0 0000111111111111111 No 13 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=100.00 E-value=2.5e-91 Score=517.27 Aligned_cols=441 Identities=15% Similarity=0.179 Sum_probs=324.3 Q ss_pred eeeeecceeeeccccccccccccCCCCCccc-ccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLF-EYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTS 140 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~-~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAs 140 (945) .-+|. +||++++..+... ...+.. ...+..+ .+.+ ...++..++.+.||++++||+||++||++||+ T Consensus 1 Mg~~~--~l~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~----~~~~g~~v~~~~al~~~~v~~~i~~ia~~iA~ 68 (457) T protein:vir:62 1 MGFWS--ALFGRGHSPALDA-----AEGRAWEPYDPSIY-NLGA----TASSGERVTPHDALQVSAVFASVRLLSETIAT 68 (457) T ss_pred Cchhh--hhhcccccccccc-----ccccccccchhhhh-hccc----cccCCceechHHhhccHHHHHHHHHHHHhHhh Confidence 22332 3555443322111 000000 0000100 0111 11233567788999999999999999999999 Q ss_pred CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 141 KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 141 LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) +||++|++..++ ++....|+++.|+++||++||+++||+. ++.++++.||+|+++.+ ..|++.+|+||+ T Consensus 69 lp~~~~~~~~~~------~~~~~~~~~~~ll~~pn~~~t~~~f~~~----~~~~l~l~Gna~~~i~~-~~g~~~~l~~l~ 137 (457) T protein:vir:62 69 LPLSTYSKRGGT------RKEIDTPEWLDFPNAEPGGMGRIDILSQ----TVLSLLLQGNAFLAVRW-AGPNIAGLDVLD 137 (457) T ss_pred CceEEEEecCCc------cccccchHHHHhccccCCCCCHHHHHHH----HHHHHhhcCCeEEEEEe-CCCcEEEEEEEc Confidence 999999875433 2344566778888999999999999776 56788899999988755 479999999999 Q ss_pred CceeEEEEcCCCce----EEEEEEeeCCce--eeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 221 GTTIKPILSEDTGI----VVGYVQEVDGAI--VAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNL 294 (945) Q Consensus 221 Ps~Vtv~~d~dG~~----~~~Yv~~~dG~~--~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a 294 (945) |.+|++..+..+.. ++.|.+..+|+. ...++++||||++.... ++ ..+|+||+..+++.|+.+.++++++. T Consensus 138 p~~v~v~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~eiih~r~~~~-~~--~~~G~sp~~~~~~~i~~~~~~~~~~~ 214 (457) T protein:vir:62 138 PTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMML-PG--DFVGCSPISYARESIGLALAAQKYGA 214 (457) T ss_pred CcceEEEEeccCCccceeEEEEEEccCCceeEEEeeCccceEEecCCCC-CC--ceecccHHHHHHHHHHHHHHHHHHHH Confidence 99999877654432 233444444443 24578999999975543 32 23799999999999999999999999 Q ss_pred HHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHH Q lcl|Aclame:pro 295 DYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELA 373 (945) Q Consensus 295 ~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~r 373 (945) ++|. ||++|+|||+++ +.+++++++++++.|++.++| .|+|++++|++|++|+++++++.|+||+|++ T Consensus 215 ~~f~-ng~~p~gil~~~----------~~ls~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~ 283 (457) T protein:vir:62 215 HFFR-NGAMPGAVVEVP----------GTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTR 283 (457) T ss_pred HHHh-ccCCcceEEEcC----------CCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHH Confidence 9996 567899999874 468999999999999999998 6899999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCChhhcccccCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechh--hcC Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDVGILEGSNK--ATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDD--LEK 449 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lLG~~e~gT~--SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~--l~D 449 (945) ++++++||++|||||++||..+++++ +|+|++.++|+++||+||+++||++||++|++..+..+++++|+... ..| T Consensus 284 ~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~d 363 (457) T protein:vir:62 284 QFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGA 363 (457) T ss_pred HHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccC Confidence 99999999999999999999988875 88999999999999999999999999999988766666666666544 469 Q ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCc--cccccccccccccccchhhccCCCCccccc--ccCCCCCCCCCC Q lcl|Aclame:pro 450 ERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWG--DVPFSGLRNWKPEDEQAKAQQGAMPPQLAQ--AMADQPSQQGGG 525 (945) Q Consensus 450 ~kerae~~~~~v~~GimT~NEaRe~lGlpPveGG--D~~l~~~n~~~ped~~a~~~~~a~~~~~~~--~~~d~~~~~~g~ 525 (945) .++|++++++++++|+||+||+|+++|+||++|| |.++++.+..+..+........+.+...+. ...+.+.+++.. T Consensus 364 ~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (457) T protein:vir:62 364 PKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAE 443 (457) T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceeeeccccccccccccccccCCCccCCCCccCCCCCCCCCCCC Confidence 9999999999999999999999999999999998 999998877655433221211111111111 111111111112 Q ss_pred CCCCccccchhHHH Q lcl|Aclame:pro 526 VDENSSVPSEQKNA 539 (945) Q Consensus 526 ~dd~e~~~se~k~a 539 (945) .+.++...+...++ T Consensus 444 ~~~d~~~~~~~~~~ 457 (457) T protein:vir:62 444 GDPDEGETEDDDDA 457 (457) T ss_pred CCCccccccccccC Confidence 22222222222222 No 14 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=100.00 E-value=4.5e-91 Score=515.92 Aligned_cols=410 Identities=15% Similarity=0.226 Sum_probs=323.5 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-||+ +||++.....+. .+ ..+.+ +.. ++ ...+.+..+..+.++++++||+||++||++||++ T Consensus 1 Mg~f~--~lf~r~~~~~~~----~~--~~~~~-----~~~---~~-~~~~~g~~v~~~~al~~~~v~~~i~~Ia~~ia~~ 63 (414) T protein:vir:44 1 MVFFS--GLFQRKSDAPVT----TP--AELAD-----AIG---LS-YDTYTGKQISSQRAMRLTAVFSCVRVLAESVGML 63 (414) T ss_pred Cchhh--hhhccCccCccc----ch--hhHhH-----hhc---cC-ccccCCceechhhhhccHHHHHHHHHHHHHhccC Confidence 44553 355543211100 00 01110 111 11 1122334566788999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|+.++++. +.+.+|++++||+ +||++||+++||+. ++.+++++|++|++++++ .|++++|+||+ T Consensus 64 p~~~~~~~~~~~------~~~~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~~ll~Gna~~~i~~~-~g~~~~L~~l~ 132 (414) T protein:vir:44 64 PCNLYHLNGSLK------QRATGERLHKLISTHPNGYMTPQEFWEL----VVTCLCLRGNFYAYKVKA-FGEVAELLPVD 132 (414) T ss_pred ceEEEEecCCce------eecccchHHHHHHhhcccCCCHHHHHHH----HHHHHhhcCCeEEEEEeC-CCcEEEEEEEc Confidence 999999876653 3567899999996 89999999998776 567778999999998887 69999999999 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) |.+|++..+.+|...|.+ ...++....++++||||++.. +.++ .+|+||+..++.+++.+.++++++.++|. | T Consensus 133 ~~~v~~~~~~~~~~~y~~--~~~~g~~~~~~~~evih~~~~-~~d~---~~G~s~i~~~~~~i~~~~~~~~~~~~~f~-n 205 (414) T protein:vir:44 133 PGCVVPKLNSSWEPVYQV--TFPDGSTDVLSQEDIWHVRTL-TLDG---LVGLNPIAYAREAISLAAATEEHGARLFS-N 205 (414) T ss_pred CceEEEEECCCCcEEEEE--EecCceEEEEccccEEEecCC-CCCC---cccccHHHHHHHHHHHHHHHHHHHHHHHh-c Confidence 999999988887765433 344556678999999999754 3332 37999999999999999999999999996 5 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARK 379 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ee 379 (945) |++|+||+.++ +.+++++.++++++|++.++| +|+|+++++++|++|+++++++.|+||+|++++++++ T Consensus 206 g~~p~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~ 275 (414) T protein:vir:44 206 GAVTSGVLRTE----------QTLSDQAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEE 275 (414) T ss_pred cCCCceEEEeC----------CCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChHHHHHHHHHHHHHHH Confidence 77899999874 468999999999999999988 7899999999999999999999999999999999999 Q ss_pred HHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechh--hcCHHHHHHHH Q lcl|Aclame:pro 380 ICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDD--LEKERDWWNII 457 (945) Q Consensus 380 IA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~--l~D~kerae~~ 457 (945) ||++|||||++||..+++|++|+|++...|+++||+||+++||+++|++|++.....+++++|+... ..|.+++++++ T Consensus 276 Ia~~fgVpp~~l~~~~~~t~~n~e~~~~~~~~~~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~ 355 (414) T protein:vir:44 276 ICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRKSKQGVFYAKFNAGALLRGDMKSRFEAY 355 (414) T ss_pred HHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCceEEEEechhhhccCHHHHHHHH Confidence 9999999999999999999999999999999999999999999999999887765556667766554 46899999999 Q ss_pred HHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCcccc Q lcl|Aclame:pro 458 QGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVP 533 (945) Q Consensus 458 ~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~ 533 (945) ++++++|+||+||+|+++|+||+||||.++++.+......... ..+.+++.++.+++.+ T Consensus 356 ~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~-----------------~~~~~~~~~~~d~~~~ 414 (414) T protein:vir:44 356 ATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMTTKPSDGS-----------------KAGKQKDNANADETTS 414 (414) T ss_pred HHHHhCCCcCHHHHHHHhCCCCCCCcceecccccccccCCccc-----------------cCCCCCCCCCCCCCCC Confidence 9999999999999999999999999999988776543211000 0000011111111111 No 15 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=100.00 E-value=3.8e-91 Score=516.31 Aligned_cols=413 Identities=15% Similarity=0.190 Sum_probs=326.5 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-||. +||++.+...+. ...+....++....+.-| ..+.. ...+.++...|+++++|++||++||++||++ T Consensus 1 MG~f~--~lf~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~g~---~~~~~v~~~~al~~~~v~~ci~~ia~~iA~l 71 (422) T protein:vir:13 1 MGFLR--GLFNKKNNNDEK-RSNYDEDIGIDISDSNFW---EKFGI---KLNFSVRGKRALKENTVYVCTKIRAESIGKL 71 (422) T ss_pred Cchhh--hhhhccCCccch-hhhhhhccccccCcchhh---hhccc---cCCcccchhhhhccHHHHHHHHHHHHhhhhC Confidence 22332 455544322111 011111111100011111 11111 1234577888999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) |+++|+..+ ...+|+++++|+ +|||+||+++||+. ++.+++++|++|+++.|+..|+|++|+|++ T Consensus 72 p~~~~~~~~----------~~~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gna~~~i~r~~~G~~~~L~~i~ 137 (422) T protein:vir:13 72 SLKIYKDKE----------EYKEHELYYLLRYKPNPLMSSINFWKC----LETQRTLKGNAYAYIERDRKGKIIGLYPIN 137 (422) T ss_pred ceEEEecCc----------ccccchHHHHHhhhcccCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEEEEC Confidence 999997432 234699999997 89999999998766 677889999999999999999999999999 Q ss_pred CceeEEEEcCCCce----EEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 221 GTTIKPILSEDTGI----VVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDY 296 (945) Q Consensus 221 Ps~Vtv~~d~dG~~----~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~ 296 (945) |++|++..+.+|.. ...|++...++....++++||||++++...++ .+|+||+..++++++.+.++++++.++ T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~y~~~~~~g~~~~~~~~eiih~~~~~~~~~---~~G~s~~~~~~~~i~~~~~~~~~~~~~ 214 (422) T protein:vir:13 138 SDNVTKIIDDDNFLSSLSKVWYVVTDKNGKEHKLLPDEMLHFIGDITLDG---LIGIKPLDYLRCTIENGRATQEFINKF 214 (422) T ss_pred CcceEEEEcCCcceeccceEEEEEEeCCCeEEEEcccceEEEcCCCCCCC---cccccHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999888743 23455555666777899999999987654443 479999999999999999999999999 Q ss_pred HHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHH Q lcl|Aclame:pro 297 YRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEF 375 (945) Q Consensus 297 F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~ 375 (945) |. ||++|+|||+++ +.+++++.+++++.|++.++| .|+++++|+++|++|+++++++.|+||+|++++ T Consensus 215 f~-ng~~p~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~ 283 (422) T protein:vir:13 215 FK-NGLSIKGIVQYV----------GDLDEKAKKIFKKEFESMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSKL 283 (422) T ss_pred Hh-ccCCccEEEEeC----------CCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceeeeccCChhHHHHHHHHHH Confidence 96 467899999874 468999999999999999988 689999999999999999999999999999999 Q ss_pred HHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cceeEEEeechh--hcCHHH Q lcl|Aclame:pro 376 VARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN-EKDIKLWFKEDD--LEKERD 452 (945) Q Consensus 376 ~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~-~~g~~f~fd~~~--l~D~ke 452 (945) ++++||++|||||++||..+.+|++|+|++..+|+++||+||+++||+++|++|++..+ ..+++++|+... ..|.++ T Consensus 284 ~~~~Ia~~fgVpp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~l~r~d~~~ 363 (422) T protein:vir:13 284 TKRELAATFGMKSYHLNDLERATFNNLTEQQKDFYVTTLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVDTILRSDIKT 363 (422) T ss_pred HHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhcCCceEEeechhhhcCCHHH Confidence 99999999999999999999999999999999999999999999999999998877543 346677776554 459999 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCC Q lcl|Aclame:pro 453 WWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGG 525 (945) Q Consensus 453 rae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~ 525 (945) +++++++++++|+||+||+|+++|+||+||||.++++.+.+++....... ...++.+++ T Consensus 364 ~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~l~~~~~~~--------------~~~g~~~g~ 422 (422) T protein:vir:13 364 RYEAYRIGIQGGFIEANEARRRENLPPVEGGDRLLVNGNMIPIEMAGEQY--------------KKGGEKGGK 422 (422) T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccCccchhhccccc--------------ccCCCcCCC Confidence 99999999999999999999999999999999999988877654321100 011111111 No 16 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=100.00 E-value=8.5e-91 Score=514.37 Aligned_cols=426 Identities=13% Similarity=0.125 Sum_probs=313.7 Q ss_pred hhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccH Q lcl|Aclame:pro 46 LLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNND 125 (945) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~ns 125 (945) .+.-|++.--+.+ --.|.++. .++..++....+.+ .....+ ..+....+..|+...||+++ T Consensus 1 ~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~------~~~~s~~g~~v~~~~al~~~ 61 (432) T protein:vir:10 1 MPDEKKLGLLGQL---------KAMFVPPD-PVDIGGGQTFTPVN---ATARDL------GIIISDTGAAVNADAIMRLD 61 (432) T ss_pred CCCCcccchhhhh---------HhhcCCcc-ccccccccccccCc---chhhhh------cccccccCcccchhhhhcch Confidence 3333332211100 00011110 01110000000000 000001 11112234567889999999 Q ss_pred HHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEE Q lcl|Aclame:pro 126 SKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIV 204 (945) Q Consensus 126 aV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~ 204 (945) +||+||++||++||++||++|+++.++. .++.+||+++||+ +||++||+++||+. ++.+++++||+|++ T Consensus 62 ~V~~~i~~Ia~~ia~lp~~~y~~~~~g~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~----l~~~lll~Gnay~~ 131 (432) T protein:vir:10 62 AVAACVKLVSQAIAAMPLTMYMRTPDGR------KEAVNHPLYTLLLDGPNSTQTAFDFWQV----VVTRLLLDGTAYVR 131 (432) T ss_pred HHHHHHHHHHHhhhhCceeEEEecCCCc------ccccccHHHHHHHhcccccCCHHHHHHH----HHHHHhhcCCeEEE Confidence 9999999999999999999999887764 2456899999996 89999999999876 56777899999999 Q ss_pred EEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHH Q lcl|Aclame:pro 205 KIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVIL 284 (945) Q Consensus 205 iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~ 284 (945) +.++ +|++++|+||+|++|++..+.+|...|+|. ..++....++++||+|++.+. .++ .+|+||+..+++.++ T Consensus 132 ~~~~-~g~~~~L~~l~~~~v~v~~~~~g~~~y~~~--~~~g~~~~~~~~~iih~~~~~-~dg---~~G~spi~~~~~~i~ 204 (432) T protein:vir:10 132 KVVT-DGRIESLQYLANDRLTITTDTKGNTAYRYR--RTDGQMIDIPKQQIWKIMGYS-LDG---ENGLSAIRYGAQIFG 204 (432) T ss_pred EEec-CCcEEEEEEEcCCceEEEEcCCCcEEEEEE--ecCceEEEEcCccEEEecCCC-CCC---cccccHHHHHHHHHH Confidence 9887 599999999999999999998887665443 345566789999999997542 222 379999999999999 Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCCh Q lcl|Aclame:pro 285 SDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKR 364 (945) Q Consensus 285 ~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp 364 (945) .+.++++++.++|. ||++|+||++++ +.++++++++++++|.. +.|+|++++|++|++|+++++++ T Consensus 205 ~~~~~~~~~~~~f~-ng~~~~gil~~~----------~~l~~e~~~~~~~~~~~---~~nag~~~vl~~g~~~~~l~~~~ 270 (432) T protein:vir:10 205 TAIAAEAQAARAFR-NGQLQSVYYQID----------RFLTDDQYDSFAKKVSG---SVEAGRAPLLEGGMDVKSLGLNP 270 (432) T ss_pred HHHHHHHHHHHHHh-cCCCcceEEecC----------CCCCHHHHHHHHHHHhh---hhhCCCceecCCCceEEEccCCh Confidence 99999999999996 577899999874 46899999999888853 35789999999999999999999 Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEE Q lcl|Aclame:pro 365 RDMQFKELAEFVARKICAVYQVSPQDVGILEGSNK---ATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLW 441 (945) Q Consensus 365 ~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~---SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~ 441 (945) +|+||+|++++++++||++|||||++||+.+.+++ +|+|++.+.|+++||.||+++||+++|++|++.....+++|+ T Consensus 271 ~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~~~~~~~ 350 (432) T protein:vir:10 271 VDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFLSMTLSPWLRRIEQSIALNLLSPAERRRYFAD 350 (432) T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCceEEE Confidence 99999999999999999999999999999877654 889999999999999999999999999988776555667777 Q ss_pred eechhh--cCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCC Q lcl|Aclame:pro 442 FKEDDL--EKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQP 519 (945) Q Consensus 442 fd~~~l--~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~ 519 (945) |+...+ .|.++|++++++++++|+||+||+|+++|+||++||+..+....+..+.+..+. ...+++ .+. T Consensus 351 fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~glppi~g~~~~~~~~~~~~pl~~~~~---~~~~~~----~~~-- 421 (432) T protein:vir:10 351 FDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIGL---QASPEP----ASG-- 421 (432) T ss_pred eechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceEeecCcccchhhhcc---cCCCCC----CCC-- Confidence 776554 699999999999999999999999999999999988765533333333221110 000000 000 Q ss_pred CCCCCCCCCCccccch Q lcl|Aclame:pro 520 SQQGGGVDENSSVPSE 535 (945) Q Consensus 520 ~~~~g~~dd~e~~~se 535 (945) .+..++++.. + T Consensus 422 ---~~~~~~~~~~--~ 432 (432) T protein:vir:10 422 ---LGNQQQDKVS--K 432 (432) T ss_pred ---CCCccccccc--C Confidence 0001111000 0 No 17 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=100.00 E-value=8.1e-91 Score=514.50 Aligned_cols=421 Identities=15% Similarity=0.154 Sum_probs=328.3 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-+|++=.-|+|+++. +.....++ ...+ ..|.+.+ ..++.++.+.|+++++||+||++||++||++ T Consensus 1 M~~~~~~f~~~~r~~~-~~~~~~~~---------~~~~---~~~~g~~-~~~~~v~~~~al~~~~v~~~i~~ia~~ia~l 66 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTS-QVIELNKD---------DEKL---LEWLGIS-PSTISVKGKNALKVATVFACIKILSESVSKL 66 (429) T ss_pred CchhhhhhcccccCcc-cccccCCC---------hHHH---HHHhcCC-CCcceechhhhhccHHHHHHHHHHHHhhccC Confidence 4444443223333321 11000000 0000 1111111 1234577788999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|++.+++. +++.+||+++||+ +|||+||+++||+. ++.+++++|++|+++.|+..|++++|+|++ T Consensus 67 ~~~~~~~~~~~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~i~r~~~G~~~~L~~i~ 136 (429) T protein:vir:10 67 PLKIYQEDEYGI------QRGTKHYLNNLLRLRPNPYMSSMNFFGS----LEAQKNLYGNSYANIEFDRKGKVQALWPID 136 (429) T ss_pred ceEEEEecCCce------eeccccHHHHHHHhhccCCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEEEEc Confidence 999999876653 3467899999996 89999999998766 577788999999999999999999999999 Q ss_pred CceeEEEEcCCCceE---EEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 221 GTTIKPILSEDTGIV---VGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYY 297 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~---~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F 297 (945) |++|++..++.+... ..|+....++....++++||||++.....++ .+|+||+..++++++.+.++++++.++| T Consensus 137 ~~~v~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~~~~~~~~~---~~G~s~i~~~~~~i~~~~~~~~~~~~~~ 213 (429) T protein:vir:10 137 ASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDG---LVGVPTMEYLKSTLENSASADKFINNFY 213 (429) T ss_pred CceeEEEEcCcccccccceEEEEEccCCeEEEEccccEEEecCCCCCCC---cccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 999999988765332 1233334455677899999999986654433 3699999999999999999999999999 Q ss_pred HhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHH Q lcl|Aclame:pro 298 RKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFV 376 (945) Q Consensus 298 ~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~ 376 (945) . ||++|+|+|+.+ +.+++++.+++++.|++.++| .|+|+++++++|++|+++++++.|+|++++++++ T Consensus 214 ~-ng~~~~~il~~~----------~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 282 (429) T protein:vir:10 214 K-QGLQVKGLVQYV----------GDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELT 282 (429) T ss_pred h-ccCCccEEEEcC----------CCCCHHHHHHHHHHHHHHhccccccCceeecCCCceEEEccCChhHHHHHHHHHHH Confidence 6 577899999874 468999999999999999988 6899999999999999999999999999999999 Q ss_pred HHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeEEEeechh--hcCHHHH Q lcl|Aclame:pro 377 ARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-NEKDIKLWFKEDD--LEKERDW 453 (945) Q Consensus 377 ~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-~~~g~~f~fd~~~--l~D~ker 453 (945) +++||++|||||++||..+.+|++|+|++..+|++.||+||+++||+++|++|++.. ...+++++|+... ..|.+++ T Consensus 283 ~~~Ia~~fgVP~~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~~ll~~d~~~~ 362 (429) T protein:vir:10 283 IRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTR 362 (429) T ss_pred HHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHH Confidence 999999999999999999999999999999999999999999999999999887653 3446677776554 4599999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 454 WNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 454 ae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) ++++++++++|+||+||+|+++|+||+||||+++++.+.++..... ..+. + +++..++.+.+.+++. T Consensus 363 ~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~d~~~-~~~~--k-------~g~~~~~~~~~~~e~~ 429 (429) T protein:vir:10 363 YEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAG-QAYL--K-------GGDTNGEVSKEGNEGN 429 (429) T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccccchhhcc-cccc--C-------CCCCCCCCCCCCCCCC Confidence 9999999999999999999999999999999999998776553211 1111 0 1111111111222222 No 18 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=100.00 E-value=2e-90 Score=512.31 Aligned_cols=409 Identities=16% Similarity=0.227 Sum_probs=324.1 Q ss_pred eeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCc Q lcl|Aclame:pro 63 IIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKE 142 (945) Q Consensus 63 ~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP 142 (945) ++|+ ++|+|++...... + ..+.+ ...++ ...+.+..++.+.++++++|++||++||++||++| T Consensus 1 ~~f~--~~f~r~~~~~~~~---~---~~~~~--------~~~~~-~~~~~g~~v~~~~~l~~~~v~~~i~~Ia~~iA~~p 63 (413) T protein:vir:48 1 MFFS--GLFQRKSDAPVTT---P---AELAE--------AIGLS-YDTYTGKRISSQRAMRLTAVYSCVRVLAESVGMLP 63 (413) T ss_pred Cccc--hhhccCccCCccc---h---HHHHH--------hhhcC-cccccCceechhhhhccHHHHHHHHHHHHhhhhCc Confidence 4443 4666643211110 0 01111 01111 11223345678889999999999999999999999 Q ss_pred eEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 143 LEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 143 ~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) +++|+.+.++. .++.+||+++||+ +||++||+++||+. ++.++++.|++|+++.++ .|+|++|||++| T Consensus 64 ~~~~~~~~~~~------~~~~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gn~~~~i~~~-~g~~~~L~~l~~ 132 (413) T protein:vir:48 64 CSLYKISGTLK------TRVVDERLHKLVSAKPNGYMTPQEFWEL----VIVCLCLRGNFYAYKVKA-LGEVVELLPIDP 132 (413) T ss_pred eEEEEecCCcc------eeecccHHHHHHHhhccCCCCHHHHHHH----HHHHHhhcCceEEEEEeC-CCcEEEEEEEcC Confidence 99998766543 3457899999997 89999999998776 567778999999998887 689999999999 Q ss_pred ceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnG 301 (945) ++|++..+.++...+. +...++....++++||||++.+. .++ .+|+||+..++++++.+.++++++.++|. || T Consensus 133 ~~v~~~~~~~~~~~y~--~~~~~g~~~~~~~~evih~~~~~-~d~---~~G~s~i~~~~~~i~~~~~~~~~~~~~~~-ng 205 (413) T protein:vir:48 133 GCVEPKLNSQWQPVYQ--VTFPDGSVDVLTQDEIWHVRTLT-LDG---LVGLNPIAYAREAISLAAATEEHGARLFG-NG 205 (413) T ss_pred ceEEEEEcCCceEEEE--EEecCceEEEEccccEEEecCcC-CCC---cccccHHHHHHHHHHHHHHHHHHHHHHHh-cc Confidence 9999999888765543 33445556789999999997653 332 47999999999999999999999999996 56 Q ss_pred CCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKI 380 (945) Q Consensus 302 a~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeI 380 (945) .+|+|||+.+ +.+++++.+++++.|++.++| +|+|+++++++|++|+++++++.|+||++++++++++| T Consensus 206 ~~p~gil~~~----------~~~~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~I 275 (413) T protein:vir:48 206 AVTSGVLRTE----------QKLTPDAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEI 275 (413) T ss_pred CCcceEEEeC----------CCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEeccCChhHHHHHHHHHHHHHHH Confidence 7899999875 468999999999999999998 78999999999999999999999999999999999999 Q ss_pred HHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhh--cCHHHHHHHHH Q lcl|Aclame:pro 381 CAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDL--EKERDWWNIIQ 458 (945) Q Consensus 381 A~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l--~D~kerae~~~ 458 (945) |++|||||++||..+++|++|+|++...|++.||+||+++||++||++|++.....+++++|+...+ .|.++++++++ T Consensus 276 a~~fgVPp~~lg~~~~~t~~n~e~~~~~f~~~~i~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~ 355 (413) T protein:vir:48 276 CRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRESKQGKFYAKFNAGALLRGDMKSRFEAYA 355 (413) T ss_pred HHHhCCCHHHhCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccCCeEEEEechhhhccCHHHHHHHHH Confidence 9999999999999999999999999999999999999999999999998876555667777766554 58999999999 Q ss_pred HHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCcccc Q lcl|Aclame:pro 459 GQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVP 533 (945) Q Consensus 459 ~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~ 533 (945) +++++|++|+||+|+++|+||+||||.++++.+..+... . .+..++++++++.++..+ T Consensus 356 ~~~~~g~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~-~----------------~~~~~~~~~~~~~~~~~~ 413 (413) T protein:vir:48 356 TGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMTTSPS-A----------------GDDNGKKKESGDADKTAS 413 (413) T ss_pred HHHhCCCcCHHHHHHHhCCCCCCCcceeecccccccccc-c----------------cccCCCCCCCCCccccCC Confidence 999999999999999999999999999998776433221 0 000011111111111111 No 19 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=100.00 E-value=1.7e-90 Score=512.73 Aligned_cols=414 Identities=14% Similarity=0.128 Sum_probs=321.1 Q ss_pred eeecceeeeccccccccccccCCCCCcccccCcccce-eccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCc Q lcl|Aclame:pro 64 IFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLM-YLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKE 142 (945) Q Consensus 64 ~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~-~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP 142 (945) .|-+ |++. +......+.. .+|. .+.. .....++..|+.+.||++++||+||++||++||++| T Consensus 1 m~~~-----~~~~--~~~~~~~~~~--------~~~~~~~~g--~~~s~~~~~v~~~~al~~~~v~~cv~~ia~~ia~lp 63 (419) T protein:vir:80 1 MFFS-----RQLL--SNLGQTQPGS--------GGWVSALLG--SARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLP 63 (419) T ss_pred CCcc-----cccc--cccCcCCCCc--------chhhHHhhc--ccccccCcccChHHhhccHHHHHHHHHHHHhhccCc Confidence 2211 1111 0111111110 1110 0000 111223457788999999999999999999999999 Q ss_pred eEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 143 LEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 143 ~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) |++|++++++. ++..+|++++||+ +||++||+++||+. ++.++++.|++|+++.|+..|+|++||||+| T Consensus 64 ~~~~~~~~~~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~ 133 (419) T protein:vir:80 64 VELYERSGDDR------KPATDHPLYSILKYEPNPWQTPFEYQEQ----SQVAVGLRGNSYSFIDRDQDGVIQGLYPLDN 133 (419) T ss_pred eEEEEecCCCc------ccccccHHHHHHHhhcccCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEEEecC Confidence 99999887653 3567899999997 89999999999776 5677889999999999999999999999999 Q ss_pred ceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnG 301 (945) ++|++..+.+|...+++ .|. ..+++++|+|++.+.. ++ .+|+||+..++++++.+.++++++.++|. || T Consensus 134 ~~v~i~~~~~~~~~y~~----~~~--~~~~~~~i~h~~~~~~-d~---~~G~s~i~~~~~~i~~~~~~~~~~~~~f~-ng 202 (419) T protein:vir:80 134 EAVTVMKGPDLKPMYRV----AGA--DPLPQRLVHHVRWMSI-NG---YTGLSPVLLHANAIGHAQAIQQYAGKSFM-NG 202 (419) T ss_pred ceEEEEECCCceEEEEE----cCc--cccchhheEEecCCCC-CC---cccccHHHHHHHHHHHHHHHHHHHHHHHh-cC Confidence 99999998887654332 232 2477888888875432 22 37999999999999999999999999996 56 Q ss_pred CCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKI 380 (945) Q Consensus 302 a~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeI 380 (945) ++|+|+|+.+.. .++..++++.+++++.|++.++| +|+|+++++++|++|+++++++.|+||+|++++++++| T Consensus 203 ~~~~gil~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~~I 276 (419) T protein:vir:80 203 TALSGVIERPTD------APALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDI 276 (419) T ss_pred CCccEEEEecCC------CCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEeccCChhhHHHHHHHHHHHHHH Confidence 789999987642 23456889999999999999998 68999999999999999999999999999999999999 Q ss_pred HHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhh--cCHHHHHHHHH Q lcl|Aclame:pro 381 CAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDL--EKERDWWNIIQ 458 (945) Q Consensus 381 A~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l--~D~kerae~~~ 458 (945) |++|||||++||..+++|++|+|++.+.|+++||.||+++||++++++|++.....+++++||...+ .|.++|+++++ T Consensus 277 a~~fgVPp~llg~~~~~t~~n~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~~~d~~~~~~~~~ 356 (419) T protein:vir:80 277 ARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYA 356 (419) T ss_pred HHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHH Confidence 9999999999999999999999999999999999999999999999988766555677777776554 58999999999 Q ss_pred HHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhHH Q lcl|Aclame:pro 459 GQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKN 538 (945) Q Consensus 459 ~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~ 538 (945) +++++|++|+||+|+++|+||+||||+++++.+.+...... ..+.++.++++. T Consensus 357 ~~~~~G~~T~NE~R~~~g~~p~~gGD~~~~~~n~~~~~~~~--------------------~~~~~~~~~~~~------- 409 (419) T protein:vir:80 357 VGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQ--------------------PIPMGKTEPTKA------- 409 (419) T ss_pred HHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccc--------------------cccCCCCCchhh------- Confidence 99999999999999999999999999999887654321100 000111111111 Q ss_pred HHHHHHHHHHh Q lcl|Aclame:pro 539 AGLEVLRNLFK 549 (945) Q Consensus 539 a~~~~lr~~~k 549 (945) ..+.+++++. T Consensus 410 -~~~~~~~~l~ 419 (419) T protein:vir:80 410 -ALDEIGRILS 419 (419) T ss_pred -hHHHHHhhcC Confidence 1111122222 No 20 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=100.00 E-value=2e-90 Score=512.33 Aligned_cols=412 Identities=14% Similarity=0.097 Sum_probs=316.7 Q ss_pred eeeeecceeeecccccccccc--ccCCCCCccccc--Ccccceecc-----ccCCcccchhhhhhHHhhhccHHHHHHHH Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNH--QEPPFKFNLFEY--SPESLMYLP-----SISDPDAFFLINLFRKYRFNNDSKLIKVS 132 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~--r~pp~~f~L~~~--s~~sl~~lp-----s~s~p~~~~~~~v~~~~Am~nsaV~aCV~ 132 (945) .-+|-. +++ .+...+.+. .+|+....-... .-+.+.+.. .|.......+..+....|+++++||+||+ T Consensus 1 Mgl~d~--~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~ci~ 77 (431) T protein:vir:10 1 MGLFDF--IRR-EKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVT 77 (431) T ss_pred Ccchhh--hhc-CcccccccccccccccccccccccccccccccccchHHHHhhccCccCcceechhhhhccHHHHHHHH Confidence 112211 111 111111111 111111100000 000111000 01111122344577889999999999999 Q ss_pred HHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCC Q lcl|Aclame:pro 133 EIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQG 211 (945) Q Consensus 133 iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G 211 (945) +||++||++|++||++++. ++...+||+++||+ +|||+||+++||+. ++.++++.||+|+++.|+. | T Consensus 78 ~Ia~~iA~lp~~v~~~~~~-------~~~~~~~~~~~lL~~~PN~~~t~~~f~~~----l~~~lll~Gna~~~i~r~~-g 145 (431) T protein:vir:10 78 LISGTIGMLPMNLISSDDS-------KQVLTDDPAHRLLKYKPNDWQTPMEFKSL----MQLRALLDGESMARIVWSG-N 145 (431) T ss_pred HHHHhhccCceEEEEecCc-------eeeeccchHHHHHhhccCCCCCHHHHHHH----HHHHHhhcCCeEEEEEEcC-C Confidence 9999999999999986432 23567899999997 89999999999876 5677789999999999985 8 Q ss_pred eEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 212 NLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDK 291 (945) Q Consensus 212 ~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee 291 (945) ++++|+|++|.+|++..+.+|...|.|+ ..++....++++||+|++.. +.++ .+|+||+..++++++.+.++++ T Consensus 146 ~~~~L~pl~~~~v~~~~~~~~~~~y~~~--~~~g~~~~~~~~dViHir~~-~~dg---~~G~spi~~~~~~i~~~~~~~~ 219 (431) T protein:vir:10 146 RPIRLIPMDRGSAKGRLTSTWQIVYDYT--TPTGDKIELPAREVFHLRDL-SIDG---VSGVSRVKLSGNALELAEQAER 219 (431) T ss_pred ceEEEEEEcCceeEEEEcCCCeEEEEEE--eCCceEEEEchhhEEEecCc-CCCC---cccccHHHHHHHHHHHHHHHHH Confidence 9999999999999999988887665443 34455678999999999754 3333 3699999999999999999999 Q ss_pred HHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHH Q lcl|Aclame:pro 292 GNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFK 370 (945) Q Consensus 292 ~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~Qfl 370 (945) ++.++|. ||++|+|||+++ +.+++++.+++++.|++.++| +|+|+++|+++|++|++++++++|+||+ T Consensus 220 ~~~~~f~-ng~~p~gil~~~----------~~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~l 288 (431) T protein:vir:10 220 AASRTFR-TGVMAGGAIEVP----------KELSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQI 288 (431) T ss_pred HHHHHHh-ccCCccEEEecC----------CCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHH Confidence 9999996 577999999874 468999999999999999988 6999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechh--hc Q lcl|Aclame:pro 371 ELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDD--LE 448 (945) Q Consensus 371 E~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~--l~ 448 (945) |++++++++||++|||||++||..+++|++|+|++.++|+++||.||+++||+++|++|++.....+++|+||... .. T Consensus 289 e~r~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~~fd~~~llr~ 368 (431) T protein:vir:10 289 ENRNHQIEEVARMYGVPRPLLMMDDTSWGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLGQRQFKFNEGALLRG 368 (431) T ss_pred HHHHHhHHHHHHHhCCCHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhcCCceEEEechhhhcc Confidence 9999999999999999999999999999999999999999999999999999999999887655566777777665 45 Q ss_pred CHHHHHHHHHHHHhCC----CcCHHHHHHHHhCCCCCC--ccccccccccccccccchhhccCCCCcccccccC Q lcl|Aclame:pro 449 KERDWWNIIQGQLNTG----FRSINEARMEKGLEPVPW--GDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMA 516 (945) Q Consensus 449 D~kerae~~~~~v~~G----imT~NEaRe~lGlpPveG--GD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~ 516 (945) |.++|+++++++++.| +||+||+|+++|+||++| ||+++++.+.....+ +.++ ++.+ T Consensus 369 d~~~r~~~~~~~~~~G~~~g~lT~NE~R~~~gl~p~~~~~gD~~~~p~n~~~~~~--------~~~~---p~~~ 431 (431) T protein:vir:10 369 TLNDQAAFFSKALGAGGQSPWMKQNEVREMLDLPRADDPVADQLRNPMTQKQKGS--------GDEP---PATT 431 (431) T ss_pred CHHHHHHHHHHHHhcccccCccCHHHHHHHhCCCCCCCccccceecccccccCCC--------CCCC---CCCC Confidence 9999999999998655 599999999999999966 999887765432110 0000 0000 No 21 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=100.00 E-value=3.2e-90 Score=511.25 Aligned_cols=426 Identities=13% Similarity=0.113 Sum_probs=314.2 Q ss_pred hhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccH Q lcl|Aclame:pro 46 LLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNND 125 (945) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~ns 125 (945) .+.-|++..-+ +=+-+-.+...+...++..-.+.+ .....+ ..+....+..|+.+.||+++ T Consensus 1 ~~~~~~~g~~~----------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~g~~v~~~~a~~~~ 61 (432) T protein:vir:97 1 MPDEKKLGLLG----------QLKAMFVPPDPVDIGGGQTFTPVN---ATARDL------GIIISDTGAAVNADAIMRLD 61 (432) T ss_pred CCCcccCchhh----------hhHhhcCCccccccccccccccCc---hhhhhh------cccccccCcccchHhhhcch Confidence 33333332111 101111111111111100000000 000111 11112234567889999999 Q ss_pred HHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEE Q lcl|Aclame:pro 126 SKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIV 204 (945) Q Consensus 126 aV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~ 204 (945) +||+||++||++||++||++|++..+|. .++.+||+++||+ +||++||+++||+. ++.+++++||+|++ T Consensus 62 aV~~~v~~Ia~~ia~lp~~~y~~~~~g~------~~~~~~pl~~lL~~~PN~~~t~~~f~~~----l~~~lll~Gnay~~ 131 (432) T protein:vir:97 62 AVAACVKLVSQAVAAMPLMMYMRTPDGR------KEAVNHPLYTLLLDGPNSTQTAFDFWQV----VVTRLLLDGTAYVR 131 (432) T ss_pred HHHHHHHHHHHhhccCceEEEEecCCCc------ccccccHHHHHHHhcccccCCHHHHHHH----HHHHHhhcCCeEEE Confidence 9999999999999999999999887764 2456899999996 89999999999876 56677899999999 Q ss_pred EEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHH Q lcl|Aclame:pro 205 KIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVIL 284 (945) Q Consensus 205 iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~ 284 (945) ++++ +|++.+||||+|++|++..+.+|...|.|. ..++....++++||+|++.+ +.+ +.+|+||+..+++.++ T Consensus 132 ~~~~-~g~~~~L~~l~p~~v~v~~~~~g~~~y~~~--~~~g~~~~~~~~~iih~r~~-~~d---g~~G~spi~~~~~~i~ 204 (432) T protein:vir:97 132 KVVT-DGRIESLQYLANDRLTITTDTKGNTAYRYR--RTDGQMIDIPRQQIWKIMGY-SLD---GENGLSAIRYGAQIFG 204 (432) T ss_pred EEec-CCcEEEEEEEcCcceEEEEcCCCcEEEEEE--ecCceEEEEccccEEEecCc-CCC---CcccccHHHHHHHHHH Confidence 9987 599999999999999999998888665443 34556678999999999754 222 2379999999999999 Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCCh Q lcl|Aclame:pro 285 SDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKR 364 (945) Q Consensus 285 ~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp 364 (945) .+.++++++.++|. ||++|+|||+++ +.+++++++++++.|.. +.|+|+++++++|++|+++++++ T Consensus 205 ~~~a~~~~~~~~f~-ng~~~~gil~~~----------~~l~~e~~~~~~~~~~~---~~nag~~~vl~~g~~~~~l~~~~ 270 (432) T protein:vir:97 205 TAIAAEAQAARAFR-NGQLQSVYYQID----------RFLTDDQYDSFSKKVSG---SVEAGRAPLLEGGMDVKSLGLNP 270 (432) T ss_pred HHHHHHHHHHHHHh-ccCCcceeEecC----------CCCCHHHHHHHHHHHhh---hhcCCCceecCCCceEEEccCCh Confidence 99999999999996 577899999874 46789999888877753 35889999999999999999999 Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEE Q lcl|Aclame:pro 365 RDMQFKELAEFVARKICAVYQVSPQDVGILEGSNK---ATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLW 441 (945) Q Consensus 365 ~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~---SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~ 441 (945) .|+||+|++++++++||++|||||++||+.+.+++ +|+|++.+.|+++||+||+++||+++|++|++.....+++++ T Consensus 271 ~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e~~~~~f~~~tl~P~~~~ie~~ln~kLl~~~e~~~~~~~ 350 (432) T protein:vir:97 271 VDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFLTMTLSPWLRRIEQSIALNLLTPAERRRYFAD 350 (432) T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccCceEEE Confidence 99999999999999999999999999999877655 889999999999999999999999999988766555567777 Q ss_pred eechh--hcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCC Q lcl|Aclame:pro 442 FKEDD--LEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQP 519 (945) Q Consensus 442 fd~~~--l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~ 519 (945) |+... ..|.++|++++.+++++|+||+||+|+++|+||++|||..+....+..+.+.... ...+++ T Consensus 351 fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~~~---~~~~~~--------- 418 (432) T protein:vir:97 351 FDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIGL---QASPEP--------- 418 (432) T ss_pred eechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceEeecccccchhhhcc---cCCCCC--------- Confidence 76654 4699999999999999999999999999999999988776644333333322111 000000 Q ss_pred CCCCCCCCCCccccch Q lcl|Aclame:pro 520 SQQGGGVDENSSVPSE 535 (945) Q Consensus 520 ~~~~g~~dd~e~~~se 535 (945) ....+..++++. ++ T Consensus 419 ~~~~~~~~~~~~--~~ 432 (432) T protein:vir:97 419 ASGLGNQQQDKV--SK 432 (432) T ss_pred CCCCCCcccccc--cC Confidence 000000001100 00 No 22 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=100.00 E-value=2.2e-90 Score=512.08 Aligned_cols=421 Identities=15% Similarity=0.157 Sum_probs=325.5 Q ss_pred eeeeecc---eeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 62 IIIFRKN---QVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKL 138 (945) Q Consensus 62 ~~~~k~n---~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~I 138 (945) .-||.|= .-|+|.+. +. +. .+....+ .+..|.+. ...++.++.+.++++++||+||++||++| T Consensus 1 M~~~~r~~~~~~~~~r~~--~~-----~~--~~~~~~~----~~~~~~g~-~~~~~~v~~~~al~~~~v~~~i~~ia~~i 66 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQT--SQ-----VI--ELNKDDE----KLLEWLGI-SPSTISVKGKNALKVATVFACIKILSESV 66 (432) T ss_pred CChHHHHHHhcCccccCc--cc-----cc--ccCCchH----HHHHHhCC-CcCccccchhhhhccHHHHHHHHHHHHhh Confidence 2222220 00222211 10 00 0000000 01112111 11235677889999999999999999999 Q ss_pred ccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEE Q lcl|Aclame:pro 139 TSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAIT 217 (945) Q Consensus 139 AsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~ 217 (945) |++||++|++++++. +++.+|++++||+ +|||+||+++||+. ++.++++.||+|+++.|+..|++++|+ T Consensus 67 a~lp~~~~~~~~~~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~i~r~~~G~~~~L~ 136 (432) T protein:vir:10 67 SKLPLKIYQEDEYGI------QRGTKHYLNNLLRLRPNPYMSSMNFFGS----LEAQKNLYGNSYANIEFDRKGKVQALW 136 (432) T ss_pred ccCceEEEEecCCce------eeccccHHHHHHHhhccCCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEE Confidence 999999999876653 2457899999997 89999999998766 577888999999999999999999999 Q ss_pred EcCCceeEEEEcCCCceE---EEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 218 PVDGTTIKPILSEDTGIV---VGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNL 294 (945) Q Consensus 218 pLdPs~Vtv~~d~dG~~~---~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a 294 (945) ||+|++|++..++.+... ..|+....++....++++||||++...+.++ .+|+||+..++++++.+.++++++. T Consensus 137 ~i~~~~v~v~~d~~~~~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~---~~G~s~~~~~~~~i~~~~~~~~~~~ 213 (432) T protein:vir:10 137 PIDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDG---LVGVPTMEYLKSTLENSASADKFIN 213 (432) T ss_pred EEcCceeEEEEcCcccccccceEEEEEecCCeEEEEccccEEEecCCCCCCC---cccccHHHHHHHHHHHHHHHHHHHH Confidence 999999999988765321 1233334556677899999999986554432 3699999999999999999999999 Q ss_pred HHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHH Q lcl|Aclame:pro 295 DYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELA 373 (945) Q Consensus 295 ~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~r 373 (945) ++|. ||++|+|||+.+ +.+++++.+++++.|++.++| .|+|+++++++|++|+++++++.|+||++++ T Consensus 214 ~~~~-ng~~p~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~ 282 (432) T protein:vir:10 214 NFYK-QGLQVKGLVQYV----------GDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENT 282 (432) T ss_pred HHHh-ccCCccEEEEcC----------CCCCHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHH Confidence 9996 567899999874 468999999999999999998 6899999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeEEEeechh--hcCH Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-NEKDIKLWFKEDD--LEKE 450 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-~~~g~~f~fd~~~--l~D~ 450 (945) ++++++||++|||||++||..+.++++|+|++..+|+++||+||+++||+++|++|++.. ...+++|+|+... ..|. T Consensus 283 ~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~ 362 (432) T protein:vir:10 283 ELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADI 362 (432) T ss_pred HHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCH Confidence 999999999999999999999999999999999999999999999999999999887543 3446667766544 4699 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 451 RDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 451 kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +++++++++++++|++|+||+|+++|+||+||||+++++.+.++..... +.... +++..++.+.+.+++. T Consensus 363 ~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~-~~~~k---------~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 363 KTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAG-QAYLK---------GGDTNGEVSKEGNEGN 432 (432) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccchhhcc-ccccC---------CCCCCCCCCCCCCCCC Confidence 9999999999999999999999999999999999999998776553321 11110 0111111111111111 No 23 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=100.00 E-value=2.2e-90 Score=512.08 Aligned_cols=421 Identities=15% Similarity=0.157 Sum_probs=325.5 Q ss_pred eeeeecc---eeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 62 IIIFRKN---QVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKL 138 (945) Q Consensus 62 ~~~~k~n---~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~I 138 (945) .-||.|= .-|+|.+. +. +. .+....+ .+..|.+. ...++.++.+.++++++||+||++||++| T Consensus 1 M~~~~r~~~~~~~~~r~~--~~-----~~--~~~~~~~----~~~~~~g~-~~~~~~v~~~~al~~~~v~~~i~~ia~~i 66 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQT--SQ-----VI--ELNKDDE----KLLEWLGI-SPSTISVKGKNALKVATVFACIKILSESV 66 (432) T ss_pred CChHHHHHHhcCccccCc--cc-----cc--ccCCchH----HHHHHhCC-CcCccccchhhhhccHHHHHHHHHHHHhh Confidence 2222220 00222211 10 00 0000000 01112111 11235677889999999999999999999 Q ss_pred ccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEE Q lcl|Aclame:pro 139 TSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAIT 217 (945) Q Consensus 139 AsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~ 217 (945) |++||++|++++++. +++.+|++++||+ +|||+||+++||+. ++.++++.||+|+++.|+..|++++|+ T Consensus 67 a~lp~~~~~~~~~~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~i~r~~~G~~~~L~ 136 (432) T protein:vir:10 67 SKLPLKIYQEDEYGI------QRGTKHYLNNLLRLRPNPYMSSMNFFGS----LEAQKNLYGNSYANIEFDRKGKVQALW 136 (432) T ss_pred ccCceEEEEecCCce------eeccccHHHHHHHhhccCCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEE Confidence 999999999876653 2457899999997 89999999998766 577888999999999999999999999 Q ss_pred EcCCceeEEEEcCCCceE---EEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 218 PVDGTTIKPILSEDTGIV---VGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNL 294 (945) Q Consensus 218 pLdPs~Vtv~~d~dG~~~---~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a 294 (945) ||+|++|++..++.+... ..|+....++....++++||||++...+.++ .+|+||+..++++++.+.++++++. T Consensus 137 ~i~~~~v~v~~d~~~~~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~---~~G~s~~~~~~~~i~~~~~~~~~~~ 213 (432) T protein:vir:10 137 PIDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDG---LVGVPTMEYLKSTLENSASADKFIN 213 (432) T ss_pred EEcCceeEEEEcCcccccccceEEEEEecCCeEEEEccccEEEecCCCCCCC---cccccHHHHHHHHHHHHHHHHHHHH Confidence 999999999988765321 1233334556677899999999986554432 3699999999999999999999999 Q ss_pred HHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHH Q lcl|Aclame:pro 295 DYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELA 373 (945) Q Consensus 295 ~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~r 373 (945) ++|. ||++|+|||+.+ +.+++++.+++++.|++.++| .|+|+++++++|++|+++++++.|+||++++ T Consensus 214 ~~~~-ng~~p~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~ 282 (432) T protein:vir:10 214 NFYK-QGLQVKGLVQYV----------GDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENT 282 (432) T ss_pred HHHh-ccCCccEEEEcC----------CCCCHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHH Confidence 9996 567899999874 468999999999999999998 6899999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeEEEeechh--hcCH Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-NEKDIKLWFKEDD--LEKE 450 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-~~~g~~f~fd~~~--l~D~ 450 (945) ++++++||++|||||++||..+.++++|+|++..+|+++||+||+++||+++|++|++.. ...+++|+|+... ..|. T Consensus 283 ~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~ 362 (432) T protein:vir:10 283 ELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADI 362 (432) T ss_pred HHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCH Confidence 999999999999999999999999999999999999999999999999999999887543 3446667766544 4699 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 451 RDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 451 kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +++++++++++++|++|+||+|+++|+||+||||+++++.+.++..... +.... +++..++.+.+.+++. T Consensus 363 ~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~-~~~~k---------~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 363 KTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAG-QAYLK---------GGDTNGEVSKEGNEGN 432 (432) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccchhhcc-ccccC---------CCCCCCCCCCCCCCCC Confidence 9999999999999999999999999999999999999998776553321 11110 0111111111111111 No 24 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=100.00 E-value=2.2e-90 Score=512.08 Aligned_cols=421 Identities=15% Similarity=0.157 Sum_probs=325.5 Q ss_pred eeeeecc---eeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 62 IIIFRKN---QVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKL 138 (945) Q Consensus 62 ~~~~k~n---~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~I 138 (945) .-||.|= .-|+|.+. +. +. .+....+ .+..|.+. ...++.++.+.++++++||+||++||++| T Consensus 1 M~~~~r~~~~~~~~~r~~--~~-----~~--~~~~~~~----~~~~~~g~-~~~~~~v~~~~al~~~~v~~~i~~ia~~i 66 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQT--SQ-----VI--ELNKDDE----KLLEWLGI-SPSTISVKGKNALKVATVFACIKILSESV 66 (432) T ss_pred CChHHHHHHhcCccccCc--cc-----cc--ccCCchH----HHHHHhCC-CcCccccchhhhhccHHHHHHHHHHHHhh Confidence 2222220 00222211 10 00 0000000 01112111 11235677889999999999999999999 Q ss_pred ccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEE Q lcl|Aclame:pro 139 TSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAIT 217 (945) Q Consensus 139 AsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~ 217 (945) |++||++|++++++. +++.+|++++||+ +|||+||+++||+. ++.++++.||+|+++.|+..|++++|+ T Consensus 67 a~lp~~~~~~~~~~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~i~r~~~G~~~~L~ 136 (432) T protein:vir:10 67 SKLPLKIYQEDEYGI------QRGTKHYLNNLLRLRPNPYMSSMNFFGS----LEAQKNLYGNSYANIEFDRKGKVQALW 136 (432) T ss_pred ccCceEEEEecCCce------eeccccHHHHHHHhhccCCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEE Confidence 999999999876653 2457899999997 89999999998766 577888999999999999999999999 Q ss_pred EcCCceeEEEEcCCCceE---EEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 218 PVDGTTIKPILSEDTGIV---VGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNL 294 (945) Q Consensus 218 pLdPs~Vtv~~d~dG~~~---~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a 294 (945) ||+|++|++..++.+... ..|+....++....++++||||++...+.++ .+|+||+..++++++.+.++++++. T Consensus 137 ~i~~~~v~v~~d~~~~~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~---~~G~s~~~~~~~~i~~~~~~~~~~~ 213 (432) T protein:vir:10 137 PIDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDG---LVGVPTMEYLKSTLENSASADKFIN 213 (432) T ss_pred EEcCceeEEEEcCcccccccceEEEEEecCCeEEEEccccEEEecCCCCCCC---cccccHHHHHHHHHHHHHHHHHHHH Confidence 999999999988765321 1233334556677899999999986554432 3699999999999999999999999 Q ss_pred HHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHH Q lcl|Aclame:pro 295 DYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELA 373 (945) Q Consensus 295 ~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~r 373 (945) ++|. ||++|+|||+.+ +.+++++.+++++.|++.++| .|+|+++++++|++|+++++++.|+||++++ T Consensus 214 ~~~~-ng~~p~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~ 282 (432) T protein:vir:10 214 NFYK-QGLQVKGLVQYV----------GDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENT 282 (432) T ss_pred HHHh-ccCCccEEEEcC----------CCCCHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHH Confidence 9996 567899999874 468999999999999999998 6899999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeEEEeechh--hcCH Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-NEKDIKLWFKEDD--LEKE 450 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-~~~g~~f~fd~~~--l~D~ 450 (945) ++++++||++|||||++||..+.++++|+|++..+|+++||+||+++||+++|++|++.. ...+++|+|+... ..|. T Consensus 283 ~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~ 362 (432) T protein:vir:10 283 ELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADI 362 (432) T ss_pred HHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCH Confidence 999999999999999999999999999999999999999999999999999999887543 3446667766544 4699 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 451 RDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 451 kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +++++++++++++|++|+||+|+++|+||+||||+++++.+.++..... +.... +++..++.+.+.+++. T Consensus 363 ~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~-~~~~k---------~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 363 KTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAG-QAYLK---------GGDTNGEVSKEGNEGN 432 (432) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccchhhcc-ccccC---------CCCCCCCCCCCCCCCC Confidence 9999999999999999999999999999999999999998776553321 11110 0111111111111111 No 25 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=100.00 E-value=6.3e-90 Score=509.60 Aligned_cols=440 Identities=15% Similarity=0.181 Sum_probs=327.9 Q ss_pred eeeeecceeeeccccc--ccccccc-CCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKII--VPYNHQE-PPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKL 138 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i--~p~~~r~-pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~I 138 (945) .-+++ +||++.+.. .....+. .|.+. .+.. +.. ...++..|+.+.||++++||+||++||++| T Consensus 1 Mg~~~--~l~~r~~~~~~~~~~~~~~~~~~~--------~~~~---~~~-~~~~g~~V~~~~al~~~~V~~~v~~Ia~~i 66 (457) T protein:vir:13 1 MGFWS--ALFGRGHSPALDGIEARAWEPYDP--------SIYN---LGA-VAASGETVTPHDALQVSAVFASVRLLSETI 66 (457) T ss_pred Cchhh--hhhcccccccccccccccccccch--------HHHh---hcc-cccCCceechHHhhccHHHHHHHHHHHHhh Confidence 22222 344332221 1111110 01000 0100 111 112245778889999999999999999999 Q ss_pred ccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEE Q lcl|Aclame:pro 139 TSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITP 218 (945) Q Consensus 139 AsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~p 218 (945) |++|+++|++..++ ++....|+++.+++.||.+||+++||+. ++.+++++||+|+++.++ .|+|++|+| T Consensus 67 A~lp~~~~~~~~~~------~~~~~~~~l~~~ln~~~n~~t~~~f~~~----~~~~lll~Gna~~~i~~~-~g~~~~l~~ 135 (457) T protein:vir:13 67 ATLPLSTYSKRGGS------RKEIVTPEWLDYPNAEPGGMGRIDILSQ----TVLSLLLQGNAFLAVRWQ-GPNIVGLDV 135 (457) T ss_pred ccCceEEEEecCCc------ccccccchHHHhccccCCCCCHHHHHHH----HHHHHhhcCCeEEEEEec-CCcEEEEEE Confidence 99999999876544 3355789999999977778999998766 567788999999988665 699999999 Q ss_pred cCCceeEEEEcCCCc----eEEEEEEeeCCce--eeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 219 VDGTTIKPILSEDTG----IVVGYVQEVDGAI--VAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKG 292 (945) Q Consensus 219 LdPs~Vtv~~d~dG~----~~~~Yv~~~dG~~--~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~ 292 (945) |+|.+|++..+.+++ .++.|.+..+|+. ...++++||||++.+.. ++ ..+|+||+..++++|+.+.+++++ T Consensus 136 l~p~~v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~diih~~~~~~-~~--~~~G~s~i~~~~~~i~~~~~~~~~ 212 (457) T protein:vir:13 136 LDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMML-PG--DFVGCSPISYARESIGLALAAQKY 212 (457) T ss_pred EccCceEEEEecCCCccceeEEEEEEecCCceeeEEeeCccceEEecCCCC-CC--ccccccHHHHHHHHHHHHHHHHHH Confidence 999999998765543 2233444444443 24578999999976543 32 237999999999999999999999 Q ss_pred HHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHH Q lcl|Aclame:pro 293 NLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKE 371 (945) Q Consensus 293 ~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE 371 (945) +.++|. ||++|+|||+++ +.++++++++++++|++.++| .|+|+++||++|++|+++++++.|+||++ T Consensus 213 ~~~~f~-ng~~p~gil~~~----------~~ls~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e 281 (457) T protein:vir:13 213 GSKFFA-NGAMPGAVVEVP----------GTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQ 281 (457) T ss_pred HHHHHh-cCCCcceEEEcC----------CCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHH Confidence 999996 577899999874 468999999999999999998 68999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhcCChhhcccccCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechh--h Q lcl|Aclame:pro 372 LAEFVARKICAVYQVSPQDVGILEGSNK--ATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDD--L 447 (945) Q Consensus 372 ~rk~~~eeIA~aFGVPP~lLG~~e~gT~--SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~--l 447 (945) ++++++++||++|||||++||..+++++ +|+|++.++|+++||.||+++||+++|++|++..+..+++++|+... . T Consensus 282 ~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~ 361 (457) T protein:vir:13 282 TRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKR 361 (457) T ss_pred HHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCceeEEeechhhhc Confidence 9999999999999999999999888765 88999999999999999999999999999988766666666776554 4 Q ss_pred cCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCc--cccccccccccccccchhhccCCCCccc-ccccCCCCCCCCC Q lcl|Aclame:pro 448 EKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWG--DVPFSGLRNWKPEDEQAKAQQGAMPPQL-AQAMADQPSQQGG 524 (945) Q Consensus 448 ~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGG--D~~l~~~n~~~ped~~a~~~~~a~~~~~-~~~~~d~~~~~~g 524 (945) .|.++|++++.+++++|+||+||+|+++|+||++|| |.++++.+..+..+.........++... +...++...+..| T Consensus 362 ~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~Pi~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 441 (457) T protein:vir:13 362 GAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEG 441 (457) T ss_pred cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccceeeccccccccccccccccCCCCCCCCCccccCCCCCCCC Confidence 599999999999999999999999999999999988 9999988776654433222222222211 1222222222233 Q ss_pred CCCCCccccchhHHHH Q lcl|Aclame:pro 525 GVDENSSVPSEQKNAG 540 (945) Q Consensus 525 ~~dd~e~~~se~k~a~ 540 (945) ..+++....+..+++. T Consensus 442 ~~d~~~~~~~~~~~~~ 457 (457) T protein:vir:13 442 KPDDEGATEEDDEDDA 457 (457) T ss_pred CCccccCCCCcccccC Confidence 3333332333333322 No 26 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=100.00 E-value=7.3e-90 Score=509.25 Aligned_cols=425 Identities=14% Similarity=0.149 Sum_probs=313.9 Q ss_pred CCCcchhhhhhhhhccceeeeeeeeeecce-eeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhH Q lcl|Aclame:pro 40 YPGFKPLLTYRALAWNSTVVYSIIIFRKNQ-VLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFR 118 (945) Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~-l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~ 118 (945) .| .-|++. +|.+-+ .|+++. .+...+.....+ . ......+...++ ..+..|+. T Consensus 1 ~~------~~~~mg----------~f~r~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~~~~~------~~g~~v~~ 54 (432) T protein:vir:81 1 MP------DEKKLG----------LFGQLKAMFVPPD-PVDIGGGQTFTP--V-NATARDLGIIIS------DTGAAVNA 54 (432) T ss_pred CC------chhhcc----------hhhhhhhhccccc-cccccccccccc--C-ccchhhhccccc------ccCcccch Confidence 11 112211 111111 122211 111110000000 0 001111111122 23456788 Q ss_pred HhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 119 KYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILT 197 (945) Q Consensus 119 ~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl 197 (945) +.|+++++||+||++||++||++|+++|+++.+|.. ++.+||+++||+ +||++||+++||+. ++.++++ T Consensus 55 ~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~~g~~------~~~~~~l~~lL~~~PN~~~t~~~f~~~----l~~~lll 124 (432) T protein:vir:81 55 DAIMRLDAVAACVKLVSQAIAAMPLTMYMRTPDGRK------EAVNHPLYTLLLDGPNSTQTAFDFWQV----VVTRLLL 124 (432) T ss_pred HhhhccHHHHHHHHHHHHhhhhCceeeEEecCCcce------ecccchHHHHHHhcccccCCHHHHHHH----HHHHHhh Confidence 999999999999999999999999999998877642 456899999996 89999999999876 5677789 Q ss_pred cCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHH Q lcl|Aclame:pro 198 IDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIE 277 (945) Q Consensus 198 ~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~ 277 (945) +|++|+++.++ +|++++||||+|++|++..+.+|...|.|+ ..++....++++||+|++.+ +.++ .+|+||+. T Consensus 125 ~Gnayv~i~~~-~g~~~~L~~l~~~~v~v~~~~~g~~~y~~~--~~~g~~~~~~~~~iih~r~~-~~dg---~~G~spi~ 197 (432) T protein:vir:81 125 DGTAYVRKVVT-DGRIESLQYLANDRLTITTDPKGNTAYRYR--RTDGQMIDIPKQQIWKIMGY-SLDG---ENGLSAIR 197 (432) T ss_pred cCCeEEEEEec-CCcEEEEEEEcCCceEEEECCCCcEEEEEE--ecCceEEEEccccEEEecCC-CCCC---cccccHHH Confidence 99999998886 599999999999999999998887665443 34556678999999999754 3232 37999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCcee Q lcl|Aclame:pro 278 ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTW 357 (945) Q Consensus 278 aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~ 357 (945) .++++|+.+.++++++.++|. ||++|+||++++ +.++++++++++++|+. +.|+|+++++++|++| T Consensus 198 ~~~~~i~~~~~~~~~~~~~f~-ng~~~~gil~~~----------~~l~~e~~~~~~~~~~~---~~nag~~~vl~~g~~~ 263 (432) T protein:vir:81 198 YGAQIFGTAIAAEAQAARAFR-NGQLQSVYYQID----------RFLTDDQYDSFAKKVSG---SVEAGRAPLLEGGMDV 263 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCcceEEecC----------CCCCHHHHHHHHHHHhh---hhcCCCceecCCCceE Confidence 999999999999999999996 578999999874 46899999999888753 3688999999999999 Q ss_pred eeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 358 IDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNK---ATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN 434 (945) Q Consensus 358 ~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~---SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~ 434 (945) ++++++++|+||+|++++++++||++|||||++||+.+.+++ +|+||+.+.|+++||.||+++||++++++|++... T Consensus 264 ~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~kLl~~~~ 343 (432) T protein:vir:81 264 KSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFLTMTLSPWLRRIEQSIALNLLSPAE 343 (432) T ss_pred EEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc Confidence 999999999999999999999999999999999999887655 88999999999999999999999999998887655 Q ss_pred cceeEEEeechhh--cCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccc Q lcl|Aclame:pro 435 EKDIKLWFKEDDL--EKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLA 512 (945) Q Consensus 435 ~~g~~f~fd~~~l--~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~ 512 (945) ..+++++|+...+ .|.++|++++.+++++|+||+||+|+++|+||++||+..+....+..+.+.... ...++ T Consensus 344 ~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~~~---~~~~~--- 417 (432) T protein:vir:81 344 RRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIGL---QASPE--- 417 (432) T ss_pred cCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceEeecCcccchhhhcc---CCCCC--- Confidence 5667777776554 689999999999999999999999999999999988766543333333221110 00000 Q ss_pred cccCCCCCCCCCCCCCCccccch Q lcl|Aclame:pro 513 QAMADQPSQQGGGVDENSSVPSE 535 (945) Q Consensus 513 ~~~~d~~~~~~g~~dd~e~~~se 535 (945) +....+..++++ .++ T Consensus 418 ------~~~~~~n~~~~~--~~~ 432 (432) T protein:vir:81 418 ------PASGLGNQQQDK--VSK 432 (432) T ss_pred ------CCCCCCCccccc--ccC Confidence 000000001110 011 No 27 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=100.00 E-value=1.1e-89 Score=508.32 Aligned_cols=400 Identities=15% Similarity=0.190 Sum_probs=320.9 Q ss_pred eeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCc Q lcl|Aclame:pro 63 IIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKE 142 (945) Q Consensus 63 ~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP 142 (945) .+|+ |.|+++.. + .+..+.....|.+ . ..+...+..+.|+++++|++||++||++||++| T Consensus 1 m~f~--~~~~~~~~---------~--~~~~~~~~~~~~g---~----~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp 60 (409) T protein:vir:10 1 MLFR--KGFKNQSQ---------E--ISIDDKKILEWLG---I----NPSETYVNGKSCLKQATVFGCIRILSDNISKLP 60 (409) T ss_pred Cccc--ccccCcCC---------C--CCCChHHHHHHhc---C----CcCcceechhhhhccHHHHHHHHHHHHhhhhCc Confidence 3344 23333221 1 1111111111111 0 112234567889999999999999999999999 Q ss_pred eEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 143 LEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 143 ~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) |++|++.. +. ++..+||+++||+ +||++||+++||+. ++.+++++|++|+++.|+..|++++|+|++| T Consensus 61 ~~~~~~~~-~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~ 129 (409) T protein:vir:10 61 IKIYQKKD-GI------KRVPDHYLEYLLKLRPNPYMSSSDFWKC----IEVQRNIYGNAYVALDFKKNGEIKGLYPLKS 129 (409) T ss_pred eEEEEecC-Ce------eeccCchHHHHHhhccCCCCCHHHHHHH----HHHHHhhcCCeEEEEEEcCCCcEEEEEEEcC Confidence 99998543 22 2346799999996 99999999998776 5677889999999999999999999999999 Q ss_pred ceeEEEEcCCCce----EEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 222 TTIKPILSEDTGI----VVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYY 297 (945) Q Consensus 222 s~Vtv~~d~dG~~----~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F 297 (945) ++|++..+.+|.. ...|++...++....++++||||++.+ ++++ .+|+||+..++++++...++++++.++| T Consensus 130 ~~V~v~~~~~~~~~~~~~~~y~~~~~~g~~~~~~~~evih~r~~-~~d~---~~G~s~i~~~~~~i~~~~~~~~~~~~~f 205 (409) T protein:vir:10 130 DGMKIFVDDTGLLNSENNVWYLYTDDLGQRHKFMSDEILHFKGL-TADG---LAGLSVIELLNHLIENGKSSETYLNNFF 205 (409) T ss_pred CceEEEEcCCccccccceEEEEEEeCCceeEEeccccEEEecCc-CCCC---cccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999998876532 234555566667788999999999754 3432 4799999999999999999999999999 Q ss_pred HhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHH Q lcl|Aclame:pro 298 RKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFV 376 (945) Q Consensus 298 ~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~ 376 (945) . ||++|+|||+.+ +.+++++.+++++.|++.++| .|+|+++++++|++|++++.++.|+||+++++++ T Consensus 206 ~-ng~~~~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 274 (409) T protein:vir:10 206 K-NGLQVKGLVQYA----------GDLNPEAEEVFKENFERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLT 274 (409) T ss_pred h-ccCCCcEEEEcC----------CCCCHHHHHHHHHHHHHHhccccccCCceecCCCceEEEccCChhhHHHHHHHHHH Confidence 6 577899999874 468999999999999999988 6899999999999999999999999999999999 Q ss_pred HHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccceeEEEeechh--hcCHHHH Q lcl|Aclame:pro 377 ARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEF-RNEKDIKLWFKEDD--LEKERDW 453 (945) Q Consensus 377 ~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~-~~~~g~~f~fd~~~--l~D~ker 453 (945) +++||++|||||++||..+.++++|+|++.++|+++||+||+++||+++|++|+.. +...+++++|+... ..|.+++ T Consensus 275 ~~~Ia~~fgVPp~~lg~~~~~~~~~~e~~~~~f~~~~l~P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~~ll~~d~~~~ 354 (409) T protein:vir:10 275 IRQIASVFGVKMHQLNDLDRATHSNITEQNREFYIDTLQSILNMYELEINYKLFLISEIKNGFYSKFNVDTILRADIKTR 354 (409) T ss_pred HHHHHHHhCCCHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhccCCcEEEEechhhhccCHHHH Confidence 99999999999999999999999999999999999999999999999999887654 33456666666554 4699999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCC Q lcl|Aclame:pro 454 WNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVD 527 (945) Q Consensus 454 ae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~d 527 (945) ++++.+++++|++|+||+|+++|+||+||||.++++.+.++.......... |+.. T Consensus 355 ~~~~~~~~~~G~~T~NE~R~~lgl~p~~ggD~~~~~~n~~~~~~~~~~~~k-------------------gGe~ 409 (409) T protein:vir:10 355 YESYKEAIQNGFKTPNEIRELEEDEPLEGGDVLLINGNMIPVKMAGEQYSK-------------------GGEK 409 (409) T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccCccchhhccccccc-------------------cCCC Confidence 999999999999999999999999999999999998877655332110000 0000 No 28 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=100.00 E-value=8e-89 Score=503.56 Aligned_cols=410 Identities=15% Similarity=0.119 Sum_probs=313.3 Q ss_pred ceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 68 NQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYK 147 (945) Q Consensus 68 n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyR 147 (945) =+||++....... +..- ........|++++ .+....||++++||+||++||++||++|+++|+ T Consensus 1 m~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~g-------~~~~~~Al~~~~V~~cv~~ia~~iA~lp~~~~~ 63 (417) T protein:vir:38 1 MKLFRGLATEVDP-----HWAD-----HLLDSGVIPSFRG-------GYLGISALRNSDVLTAVSIVSGDVSRFPLVITD 63 (417) T ss_pred CccccccccCCCc-----cchh-----hhcccccccccCC-------ceechhhcccHHHHHHHHHHHHhhccCeeEEEE Confidence 3344332211000 0000 0011111233221 223456899999999999999999999999998 Q ss_pred eccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC-CCeEEEEEEcCCceeE Q lcl|Aclame:pro 148 HIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE-QGNLVAITPVDGTTIK 225 (945) Q Consensus 148 rtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~-~G~pveL~pLdPs~Vt 225 (945) +..++ ....|+++.||. +|||+||+++||+. ++.+++++||+|++++|+. .|.|.+|+|++|++|+ T Consensus 64 ~~~~~--------~~~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~ 131 (417) T protein:vir:38 64 SSTDE--------VIDLANIEYLMNTKVNKRLSAYQWKFP----MMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQ 131 (417) T ss_pred cCCcc--------eeccchHHHHHhcccCcCCCHHHHHHH----HHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEE Confidence 76553 234689999886 89999999998776 5677889999999999986 5789999999999999 Q ss_pred EEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCce Q lcl|Aclame:pro 226 PILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPE 305 (945) Q Consensus 226 v~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~Ps 305 (945) +....+|...|+|. ..+|+....++++||||++.+ +.++ .+|+||+.++++++..+.++++++.++|. ||++|+ T Consensus 132 v~~~~~~~~~y~~~-~~~~~~~~~~~~~dviH~r~~-~~d~---~~G~s~l~~~~~~i~~~~~~~~~~~~~f~-ng~~p~ 205 (417) T protein:vir:38 132 VDTSDPDNIIYRFT-PYNSSMQKVCGFEDVIHWKFF-SYDT---IMGRSPLLSLGDEIGLQESGVSTLQKFFK-SGLKGS 205 (417) T ss_pred EEEcCCCeEEEEEE-EcCCcEEEEecCcceEEecCC-CCCC---ccccCHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCc Confidence 98888887765543 455666778999999999854 3332 36999999999999999999999999996 578899 Q ss_pred EEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 306 GILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQ 385 (945) Q Consensus 306 GILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFG 385 (945) ||++.+ +.+++++.+++++.|++.++|.|+|+++|+++|++|++++++++|+||+|++++++++||++|| T Consensus 206 ~il~~~----------~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fg 275 (417) T protein:vir:38 206 IIKAKE----------SRLSAEARQKIREDFERAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALR 275 (417) T ss_pred EEEEeC----------CCCCHHHHHHHHHHHHHHhcccccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhC Confidence 999874 4689999999999999999999999999999999999999999999999999999999999999 Q ss_pred CChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 386 VSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGF 465 (945) Q Consensus 386 VPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~Gi 465 (945) |||++||. .++++|++++..+|+++||+||+++||++++++|++.....+++++||...+. ....+.+++++++|+ T Consensus 276 VPp~~lg~--~~~~s~~e~~~~~~~~~tl~P~~~~ie~~l~~~Ll~~~~~~~~~~~fd~~~l~--~~~~~~~~~~~~~G~ 351 (417) T protein:vir:38 276 VPAYRLAQ--NSPNQSVKQLADDYIRNDLPFYFEPITSEFELKLLDDAQRHQYCIGFDTKSVN--GLPIADVNTAVNGGL 351 (417) T ss_pred CCHHHhCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhhcccceEEechhhhh--HHHHHHHHHHHhCCC Confidence 99999984 66899999999999999999999999999999988766666788999876543 222345778999999 Q ss_pred cCHHHHHHHHhCCCCCCc--cccccccccccccccchhhccCCCCcccccccCCCCCCC---CCCCCCCc Q lcl|Aclame:pro 466 RSINEARMEKGLEPVPWG--DVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQ---GGGVDENS 530 (945) Q Consensus 466 mT~NEaRe~lGlpPveGG--D~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~---~g~~dd~e 530 (945) ||+||+|+++|+||++|| |.++++.+..+.......... ......+++..++. +.+.++++ T Consensus 352 ~T~NE~R~~~gl~pi~~g~~d~~~~~~n~~~~d~~~~~~~~----~~~~~kgg~~~~~~~~~~~~~~~~~ 417 (417) T protein:vir:38 352 WTGNEGRAELGKKPLKDPNMDRIQSTLNTVFLDQKEAYQAE----HAAELKGGDTNAKGNQNGSGTNANS 417 (417) T ss_pred cCHHHHHHHhCCCCCCCCCCCeeeecccccccccccccccc----cccccCCCCCCCCCCCcCCCCcCCC Confidence 999999999999999988 567777766554432221111 11111122222221 22222222 No 29 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=100.00 E-value=1.6e-89 Score=507.43 Aligned_cols=399 Identities=15% Similarity=0.157 Sum_probs=318.4 Q ss_pred hhccceeeeeeeeeec-ceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHH Q lcl|Aclame:pro 52 LAWNSTVVYSIIIFRK-NQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIK 130 (945) Q Consensus 52 ~~~~~~~~~~~~~~k~-n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aC 130 (945) .. ||.+ .+.|+++.. .. ++.+ ++ +.+|.+. ..++.+.++++++|++| T Consensus 1 MG----------~~~~~~~~~~~~~~---------~~--~~~~----~~--~~~~~g~-----~~~~~~~al~~~~V~~~ 48 (411) T protein:vir:81 1 MG----------WWSRLTRFFRPRNE---------TV--DMTN----PL--LLQWLGV-----DPDTPRNQLSEATYFAC 48 (411) T ss_pred Cc----------hHHHHHhhccCccc---------cc--ccch----HH--HHHHhcC-----cccChhhhhccHHHHHH Confidence 22 2211 012222211 10 0000 00 1122211 13456788999999999 Q ss_pred HHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC Q lcl|Aclame:pro 131 VSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE 209 (945) Q Consensus 131 V~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~ 209 (945) |++||++||++||++||+++++.. +..+|+++++|+ +||++||+++||+. ++.+++++|++|+++.++ T Consensus 49 v~~Ia~~iA~lp~~~~~~~~~~~~------~~~~~~l~~lL~~~PN~~~t~~~f~~~----l~~~lll~Gna~~~i~r~- 117 (411) T protein:vir:81 49 LKILSESLGKLPLKMYQKTERGIV------KSDREELYNLLKLRPNPYMTSSVFWST----VEMNRNHYGNAYVWCQYS- 117 (411) T ss_pred HHHHHHhHhhCceeEEEecCCcee------eecccHHHHHHhhccCCCCCHHHHHHH----HHHHHhhcCCeEEEEEec- Confidence 999999999999999998877642 346799999997 89999999998776 567778999999999998 Q ss_pred CCeEEEEEEcCCceeEEEEcCCCce------EEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHH Q lcl|Aclame:pro 210 QGNLVAITPVDGTTIKPILSEDTGI------VVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVI 283 (945) Q Consensus 210 ~G~pveL~pLdPs~Vtv~~d~dG~~------~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I 283 (945) .|++.+|||++|+.|++..+++|.. ++.|.. ..++....++++||||++.+...++ .+|+||+..+++++ T Consensus 118 ~g~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~eiih~k~~~~~~~---~~G~s~~~~~~~~i 193 (411) T protein:vir:81 118 GPQLQALWILPSQYVTIVVDDRGLLGEKNAIWYRYND-PYDGKMYVFRNDEILHFKTSVTFDG---ITGLSVRDVLKHTV 193 (411) T ss_pred CCceEEEEEECCceEEEEEcCcccccccceEEEEEEe-cCCceEEEEccccEEEEcCCCCCCC---cccccHHHHHHHHH Confidence 6999999999999999998876532 223322 2344566799999999987655443 47999999999999 Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccC Q lcl|Aclame:pro 284 LSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKG 362 (945) Q Consensus 284 ~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~ 362 (945) +.+.++++++.++|. ||++|+|||+.+ +.+++++.+++++.|++.++| +|+|+++++++|++|+++++ T Consensus 194 ~~~~~~~~~~~~~f~-ng~~p~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~ 262 (411) T protein:vir:81 194 DGALESQKFMNNLYK-TGLTGKAVLEYT----------GDLNQEARDRLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDI 262 (411) T ss_pred HHHHHHHHHHHHHHh-ccCCCceEEEeC----------CCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccC Confidence 999999999999996 577899999874 468999999999999999988 68999999999999999999 Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccceeEEE Q lcl|Aclame:pro 363 KRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEF-RNEKDIKLW 441 (945) Q Consensus 363 sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~-~~~~g~~f~ 441 (945) ++.|+||+|++++++++||++|||||++||..+++|++|+|++..+|+++||+|++.+||+++|++|++. +...+++|+ T Consensus 263 ~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~~ 342 (411) T protein:vir:81 263 KLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSYASAEAQNLAFYVDTLLYVLKQYEEEITYKILSNDLISQGHYFK 342 (411) T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhcCCCcEEE Confidence 9999999999999999999999999999999999999999999999999999999999999999987654 334556666 Q ss_pred eechh--hcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCC Q lcl|Aclame:pro 442 FKEDD--LEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQP 519 (945) Q Consensus 442 fd~~~--l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~ 519 (945) ||... ..|.+++++++++++++|++|+||+|+++|+||+||||+++++.+.+++.........+ ++ T Consensus 343 fd~~~ll~~d~~~~~~~~~~~~~~g~~t~NE~R~~~gl~p~~ggD~~~~~~n~~pl~~~~~~~~kg----------Gd-- 410 (411) T protein:vir:81 343 FNVNVILRADIKTQMDSLSTAVQNGIMTPNEARDYLDMPADDYGNNLMANGNYIPLSMLGANYGKG----------GD-- 410 (411) T ss_pred eechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccCccchhhhhhhhccC----------CC-- Confidence 66554 45899999999999999999999999999999999999999998877664321111100 00 Q ss_pred CCCCCCC Q lcl|Aclame:pro 520 SQQGGGV 526 (945) Q Consensus 520 ~~~~g~~ 526 (945) . T Consensus 411 ------~ 411 (411) T protein:vir:81 411 ------S 411 (411) T ss_pred ------C Confidence 0 No 30 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=100.00 E-value=4.8e-89 Score=504.79 Aligned_cols=412 Identities=15% Similarity=0.185 Sum_probs=320.7 Q ss_pred eeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCc Q lcl|Aclame:pro 63 IIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKE 142 (945) Q Consensus 63 ~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP 142 (945) .||+ ++|+|+-. ..+. ..+.. ....++ +++.....+..+....++++++||+||++||++||++| T Consensus 1 m~~~--~~f~~~~~--~~~~-~~~~~-----~~~~~~-----~~~~~~~~~~~v~~~~al~~~~v~~~i~~Ia~~ia~l~ 65 (416) T protein:vir:12 1 MLLE--RMFEKRSG--SSDH-EDGFN-----NILLNM-----FGGRKTASGERVSESNSLVQPDIFACVNVLSDDIAKLP 65 (416) T ss_pred Cccc--hhcccccC--cccc-Cccch-----hHHHHh-----hcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCc Confidence 5564 35554421 1111 11110 000111 11111122345678889999999999999999999999 Q ss_pred eEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 143 LEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 143 ~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) |++|++++++. +...+||++++|. +||++||+++||+. ++.++++.|++|+++.|+..|+|.+|+||+| T Consensus 66 ~~~~~~~~~~~------~~~~~~~l~~~l~~~PN~~~t~~~f~~~----~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~ 135 (416) T protein:vir:12 66 IHTYKRTDGGI------ERKPEHKSAHAVYARPNPYMTAFTWKKL----MMTHVLTWGNAYSYIQFGSHGYPEALFPLRP 135 (416) T ss_pred eEEEEecCCcc------ccccccHHHHHHHhhcccCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEEEECC Confidence 99999776553 3456799999885 99999999998765 5777889999999999999999999999999 Q ss_pred ceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnG 301 (945) .+|++..+.+++..+ |.+..+| ....++++||+|++.+ +.++ .+|+||+.++++++..+.++++++.++|.| | T Consensus 136 ~~v~v~~~~~~~~~~-~~~~~~g-~~~~~~~~eiih~~~~-~~~~---~~G~s~i~~~~~~i~~~~~~~~~~~~~~~n-g 208 (416) T protein:vir:12 136 DYTNAYVHPTTGMLW-YQTVLNG-KAIELYDYEVLHFKGL-STDG---IHGKSPIGVVREHIGAQAAATKYNAKLYKN-E 208 (416) T ss_pred cceEEEEeCCCcEEE-EEEecCC-eEEEecCccEEEecCc-CCCC---cccccHHHHHHHHHHHHHHHHHHHHHHHhc-C Confidence 999999888776553 4444444 5668999999999754 3332 479999999999999999999999999974 6 Q ss_pred CCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKIC 381 (945) Q Consensus 302 a~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA 381 (945) ++|+|||+.+ +.++++++++++++|+... ++++++++++|++|+++++++.|+||+|++++++++|| T Consensus 209 ~~p~~il~~~----------~~~~~e~~~~~~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia 275 (416) T protein:vir:12 209 ATPRGILKVP----------AFLDEKPKENVRKEWKRVN---KVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKAQIS 275 (416) T ss_pred CCCceEEecC----------CCCCHHHHHHHHHHHHHHh---cCCCeeecCCCceEEEccCChhhHHHHHHHHHHHHHHH Confidence 7899999874 4689999999999998765 45778999999999999999999999999999999999 Q ss_pred HHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeEEEeechh--hcCHHHHHHHHH Q lcl|Aclame:pro 382 AVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-NEKDIKLWFKEDD--LEKERDWWNIIQ 458 (945) Q Consensus 382 ~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-~~~g~~f~fd~~~--l~D~kerae~~~ 458 (945) ++|||||+++|..+.+|++|+|++.++|+++||+||+.+||+++|++|++.. ...+++|+|+... ..|.+++++++. T Consensus 276 ~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~~~~~~ 355 (416) T protein:vir:12 276 MIYKVPLHKLNELDKATFSNIEHQSIEYVRNTLQPWIVNFEQELNVKLFLDHDQKSGHYVKFNIDSELRGDSKTQAEYLK 355 (416) T ss_pred HHhCCCHHHhCCccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhcCCceEEeechhhhccCHHHHHHHHH Confidence 9999999999999999999999999999999999999999999999877543 3455667776554 459999999999 Q ss_pred HHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCcc Q lcl|Aclame:pro 459 GQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSS 531 (945) Q Consensus 459 ~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~ 531 (945) +++++|+||+||+|+++|+||+||||.++++.+.++..... ..+ . .+.+. ..+|+.+.++. T Consensus 356 ~~~~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~n~~~~~~~~-~~~-~------~~~~~----~~~gge~~~~g 416 (416) T protein:vir:12 356 TLHETGVLNKDEIRELLERNPIENGDKYISSLNYVFLDFLE-EYQ-R------LKAGG----AMKGGDNKNEG 416 (416) T ss_pred HHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccc-hhh-c------ccccc----ccCCCCCcCCC Confidence 99999999999999999999999999999987766543211 111 0 00000 01111111111 No 31 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=100.00 E-value=5.3e-89 Score=504.56 Aligned_cols=405 Identities=13% Similarity=0.149 Sum_probs=322.0 Q ss_pred eecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceE Q lcl|Aclame:pro 65 FRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELE 144 (945) Q Consensus 65 ~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~ 144 (945) -+|++++++-|+..-..-.-++ ...+.....|...+ ..++....++++++|++||++||++||++||+ T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~---------~~~~~~~~~~~~~~---~~~v~~~~a~~~~~V~~ci~~ia~~ia~lp~~ 68 (409) T protein:vir:96 1 MAKENIVTRIKKKLIDNWIDQS---------ASKLYDFSPWKNKS---FWGVINNTLETNETIFSAITKLSNSMASLPLK 68 (409) T ss_pred CccccchhhhhhHHhhhhhccc---------cccccccccccCcc---ccccchhhHhhhHHHHHHHHHHHHhhhhCceE Confidence 8899999877764322111111 11111222344332 24567788999999999999999999999999 Q ss_pred EEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCce Q lcl|Aclame:pro 145 IYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTT 223 (945) Q Consensus 145 VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~ 223 (945) +|++++ ..+|+++++|+ +||++||+++||+. ++.+++++|++|+++.|+..|++++|||++|++ T Consensus 69 ~~~~~~-----------~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~ 133 (409) T protein:vir:96 69 MYEDYK-----------VVNTEVSDLLTVSPNNSLSSFDFINQ----IETIRNEKGNAYVLIERDIYHQPSKLFLLNPDV 133 (409) T ss_pred Eeeccc-----------ccchhHHHHHhhhcccCCCHHHHHHH----HHHHHhhcCceEEEEEECCCCcEEEEEEEcCce Confidence 997543 24599999996 89999999999876 567778999999999999999999999999999 Q ss_pred eEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 224 IKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSI 303 (945) Q Consensus 224 Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~ 303 (945) |++..+.++...+ |.+...++....++++||||++..++.+ ..+|+||+..+++.++.+.+++++. |.+++.. T Consensus 134 v~v~~~~~~~~~~-y~~~~~~g~~~~~~~~evih~r~~~~~~---~~~G~s~l~~~~~~i~~~~~~~~~~---~~~~~~~ 206 (409) T protein:vir:96 134 VEMLIENQSRELY-YSIHAATGNKLIVHNMDMLHFKHIVASN---MVQGISPIDVLKNTTDFDNAVRTFN---LTEMQKP 206 (409) T ss_pred eEEEEeCCCcEEE-EEEEcCCceEEEEccccEEEeCCCCCCC---ccccccHHHHHHHHHHHHHHHHHHH---HHhcCCC Confidence 9999988776543 4444555567789999999998654332 2379999999999999999988874 3456766 Q ss_pred ceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 PEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAV 383 (945) Q Consensus 304 PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~a 383 (945) ++++++. ++.+++++++++++.|++.++ |+|+++++++|++|+++++++.|+||+|++++++++||++ T Consensus 207 ~~~i~~~----------~~~l~~e~~~~~~~~~~~~~~--n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~ 274 (409) T protein:vir:96 207 DSFMLKY----------GSNVSTEKRQQVLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANV 274 (409) T ss_pred ceeEEec----------CCCCCHHHHHHHHHHHHHHhh--cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHH Confidence 7777654 357899999999999998874 6788999999999999999999999999999999999999 Q ss_pred hcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cceeEEEeechhh--cCHHHHHHHHHHH Q lcl|Aclame:pro 384 YQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN-EKDIKLWFKEDDL--EKERDWWNIIQGQ 460 (945) Q Consensus 384 FGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~-~~g~~f~fd~~~l--~D~kerae~~~~~ 460 (945) |||||++||..+++|++|+|++.+.|+++||+|++++||+++|++|++..+ ..+++|+|+...+ .|.++|+++++++ T Consensus 275 fgVPp~~lg~~~~~~~s~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~ll~~d~~~~~e~~~~~ 354 (409) T protein:vir:96 275 FQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKA 354 (409) T ss_pred hCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHH Confidence 999999999999999999999999999999999999999999998876543 3467777766554 5899999999999 Q ss_pred HhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCcc Q lcl|Aclame:pro 461 LNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSS 531 (945) Q Consensus 461 v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~ 531 (945) +++|++|+||+|+++|+||+||||+++++.+.+++....... ....+|+.+.++. T Consensus 355 ~~~G~~T~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~----------------~~~~gG~~n~~e~ 409 (409) T protein:vir:96 355 VRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELR----------------KSLKGGDKNVNES 409 (409) T ss_pred HhCCCCCHHHHHHHhCCCCCCCcceeeecccccccccchhhc----------------ccccCCCCCcCCC Confidence 999999999999999999999999999988876553211100 0011111111111 No 32 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=100.00 E-value=1e-88 Score=502.93 Aligned_cols=408 Identities=12% Similarity=0.152 Sum_probs=324.5 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-+|+|+.++++.|+...++...++ ...+.....|... ...+++...++++|+|++||++||++||++ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~v~~~~a~~~~~v~~~i~~ia~~iA~l 68 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLIDNWIDQS---------TSKLYDFSPWKNR---SFWGVINNTLETNETIFSAITKLSNSMASL 68 (412) T ss_pred CccchhhhhhhhhhhhHhhhhhccc---------ccccccccccCCc---cccccchhhhhccHHHHHHHHHHHHhHhhC Confidence 6788888888766544333222111 1122222233322 234577889999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|++++ ..+|+++.||+ +||++||+++||+. ++.+++++||+|+++.|+..|++++|+||+ T Consensus 69 p~~~~~~~~-----------~~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~i~r~~~G~~~~L~~l~ 133 (412) T protein:vir:26 69 PLKMYEDYK-----------VVNTEVSDLLTVSPNNSLSSFDFINQ----IETIRNEKGNAYVLIERDIYHQPSKLFLLN 133 (412) T ss_pred ceeEeeccc-----------cccchHHHHHHhhcccCCCHHHHHHH----HHHHHhhcCceEEEEEECCCCcEEEEEEEc Confidence 999997543 24699999996 89999999999876 567778999999999999999999999999 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) |++|++..+.+++..+ |.+...++....++++||||++.....+ ..+|+||+.++++.++.+.++++++ |.++ T Consensus 134 ~~~v~v~~~~~~~~~~-y~~~~~~g~~~~~~~~evih~~~~~~~~---~~~G~s~i~~~~~~i~~~~a~~~~~---~~~~ 206 (412) T protein:vir:26 134 PDVVEMLIENQSRELY-YSIHAATGNKLIVHNMDMLHFKHIVASN---MVQGISPIDVLKNTTDFDNAVRTFN---LTEM 206 (412) T ss_pred CceeEEEEeCCCcEEE-EEEEcCCceEEEEccccEEEeCCCCCCC---CcccccHHHHHHHHHHHHHHHHHHH---HHhc Confidence 9999999988776543 5555555667789999999998654433 2479999999999999999999885 3356 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKI 380 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeI 380 (945) +..|+++++.+ +.++++++++++++|++.++ ++|+++++++|++|+++++++.|+||+|++++++++| T Consensus 207 ~~~~~~i~~~~----------~~l~~e~~~~~~~~~~~~~~--~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~I 274 (412) T protein:vir:26 207 QKPDSFMLKYG----------SNVGKEKRQQVLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERV 274 (412) T ss_pred CCCCceEEecC----------CCCCHHHHHHHHHHHHHHhh--cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHH Confidence 77777777653 56899999999999998774 5678999999999999999999999999999999999 Q ss_pred HHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cceeEEEeechh--hcCHHHHHHHH Q lcl|Aclame:pro 381 CAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN-EKDIKLWFKEDD--LEKERDWWNII 457 (945) Q Consensus 381 A~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~-~~g~~f~fd~~~--l~D~kerae~~ 457 (945) |++|||||++||..++++++|+|++.+.|+++||+||+++||++||++|++..+ ..+++|+|+... ..|.+++++++ T Consensus 275 a~afgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kLl~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~ 354 (412) T protein:vir:26 275 ANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVY 354 (412) T ss_pred HHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHH Confidence 999999999999999999999999999999999999999999999998876543 345667776654 46899999999 Q ss_pred HHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCcc Q lcl|Aclame:pro 458 QGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSS 531 (945) Q Consensus 458 ~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~ 531 (945) ++++++|++|+||+|+++|+||+||||+++++.+.+++... ...+ ....+|+.+.++. T Consensus 355 ~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~-~~~~---------------~~~~gG~~n~~e~ 412 (412) T protein:vir:26 355 FKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTP-LELR---------------KSLKGGDKNVNES 412 (412) T ss_pred HHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccccccccc-hhhc---------------ccccCCCCCcCCC Confidence 99999999999999999999999999999998876654321 1000 0011111111111 No 33 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=100.00 E-value=1.1e-88 Score=502.84 Aligned_cols=405 Identities=12% Similarity=0.151 Sum_probs=320.5 Q ss_pred eecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceE Q lcl|Aclame:pro 65 FRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELE 144 (945) Q Consensus 65 ~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~ 144 (945) -||++++++.|....+.-...+ ...+.....|... ...++....++++++||+||++||++||++||+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~v~~~~~~~~~~V~~ci~~Ia~~ia~lp~~ 68 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQS---------TSKLYDFSPWKNR---SFWGVINNTLETNETIFSAITKLSNSMASLPLK 68 (409) T ss_pred CCccchhhhhhhhhhhhhhccc---------cccccccccccCc---cccccchhhhhccHHHHHHHHHHHHhhhhCcee Confidence 7888887776653332211111 1111111222322 234567788999999999999999999999999 Q ss_pred EEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCce Q lcl|Aclame:pro 145 IYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTT 223 (945) Q Consensus 145 VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~ 223 (945) +|++++. .+|+++.||. +|||+||+++||+. ++.+++++||+|+++.|+..|++++|+||+|++ T Consensus 69 ~~~~~~~-----------~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~ 133 (409) T protein:vir:93 69 MYEDYKV-----------VNTEVSDLLTVSPNNSLSSFDFINQ----IETIRNEKGNAYVLIERDIYHQPSKLFLLNPDV 133 (409) T ss_pred Eeecccc-----------ccchHHHHHhhhcccCCCHHHHHHH----HHHHHhhcCceEEEEEECCCCcEEEEEEEcCce Confidence 9975432 3589999986 89999999999876 567778999999999999999999999999999 Q ss_pred eEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 224 IKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSI 303 (945) Q Consensus 224 Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~ 303 (945) |++..+.+++..+ |.+...++....++++||||++.....+ +.+|+||+.+++++++.+.++++++ |.+++.. T Consensus 134 v~~~~~~~~~~~~-y~~~~~~g~~~~~~~~eVih~r~~~~~~---~~~G~s~i~~~~~~i~~~~~~~~~~---~~~~~~~ 206 (409) T protein:vir:93 134 VEMLIENQSRELY-YSIHAATGNKLIVHNMDMLHFKHIVASN---MVQGISPIDVLKNTTDFDNAVRTFN---LTEMQKP 206 (409) T ss_pred eEEEEeCCCcEEE-EEEEcCCceEEEEccccEEEeCCCCCCC---ccccccHHHHHHHHHHHHHHHHHHH---HHhcCCC Confidence 9999888776543 4444555567789999999998654333 2379999999999999999998885 3356777 Q ss_pred ceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 PEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAV 383 (945) Q Consensus 304 PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~a 383 (945) ++++++.+ +.+++++++++++.|++.+. ++|+++++++|++|+++++++.|+||+|++++++++||++ T Consensus 207 ~~~i~~~~----------~~l~~e~~~~~~~~~~~~~~--~~g~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~ 274 (409) T protein:vir:93 207 DSFMLKYG----------SNVGKEKRQQVLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANV 274 (409) T ss_pred CceEEecC----------CCCCHHHHHHHHHHHHHHhh--cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHH Confidence 77777653 56899999999999998774 5678999999999999999999999999999999999999 Q ss_pred hcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cceeEEEeechhh--cCHHHHHHHHHHH Q lcl|Aclame:pro 384 YQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN-EKDIKLWFKEDDL--EKERDWWNIIQGQ 460 (945) Q Consensus 384 FGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~-~~g~~f~fd~~~l--~D~kerae~~~~~ 460 (945) |||||++||..++++++|+|++.+.|++.||+||+++||++++++|++..+ ..+++|+|+...+ .|.++++++++++ T Consensus 275 fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~ 354 (409) T protein:vir:93 275 FQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKA 354 (409) T ss_pred hCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHH Confidence 999999999999999999999999999999999999999999998876644 3456677766554 5899999999999 Q ss_pred HhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCcc Q lcl|Aclame:pro 461 LNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSS 531 (945) Q Consensus 461 v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~ 531 (945) +++|++|+||+|+++|+||+||||+++++.+.+++..... .+ ....+|+.+.++. T Consensus 355 ~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~-~~---------------~~~~gG~~n~~e~ 409 (409) T protein:vir:93 355 VRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLE-LR---------------KSLKGGDKNVNES 409 (409) T ss_pred HhCCCcCHHHHHHHhCCCCCCCcCeeeecccccccccchh-hc---------------ccccCCCCCcCCC Confidence 9999999999999999999999999999888766532111 00 0011111111111 No 34 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=100.00 E-value=5.4e-88 Score=499.03 Aligned_cols=405 Identities=15% Similarity=0.161 Sum_probs=311.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-||. |+|++++.. |.......+. .. ...|+. .+..+....|+++++|++||++||++||++ T Consensus 1 Mgl~~--~~f~~~~~~-----~~~~~~~~~~----~~---~~~~~~----~g~~v~~~~al~~~~v~~~v~~ia~~iA~l 62 (409) T protein:vir:84 1 MSLFT--RIFSGPSEE-----RTLTKISGIP----SP---AEDWAM----HGDRPGANSAMTLGAFYACVTLLADTVASL 62 (409) T ss_pred Cchhh--hhhcCCCcc-----cccccccccc----cc---cchhhc----cCcccchhhhhccHHHHHHHHHHHHhhhhC Confidence 44454 556655321 1111111111 00 011221 123466788999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEE-EecCCCeEEEEEEc Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVK-IRDEQGNLVAITPV 219 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~i-ird~~G~pveL~pL 219 (945) ||++|+.++++ ....||+++||+ +|||+||+++||+. ++.++++.|++|+++ .++..|+|++|+|| T Consensus 63 p~~~~~~~~~~--------~~~~~~l~~lL~~~PN~~~t~~~f~~~----l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l 130 (409) T protein:vir:84 63 SIDAYRKKDNV--------RIPVSPAPKLLESTPYPGLTWFDWLWM----LMESLAVTGNAFGYISARDEANRPTAIMPI 130 (409) T ss_pred ceEEEEecCCc--------ccccchHHHHhhccCCCCCCHHHHHHH----HHHHHhhcCCeEEEEEEECCCCceEEEEEE Confidence 99999865443 235699999996 89999999998765 677888999999876 47899999999999 Q ss_pred CCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 220 DGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRK 299 (945) Q Consensus 220 dPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~n 299 (945) +|++|++....++...+.+.....++ ..++++||||++.+...+. .+|+||+..++++++.+.++++++.++|. T Consensus 131 ~p~~v~v~~~~~~~~~~~~~~~~~~g--~~~~~~dvih~~~~~~~~~---~~G~s~i~~~~~~i~~~~~~~~~~~~~f~- 204 (409) T protein:vir:84 131 HPDCIHVTDAKDEDGDWIEPVYRIDG--KVVPNHRIMHIKRYPVAGC---ALGMSPIEKAASAIGLGLAAERYGLRWFR- 204 (409) T ss_pred cCceeEEEEcCCCcceEEEEEecCCc--eEEchhhEEEecCCCCCcc---cccccHHHHHHHHHHHHHHHHHHHHHHHh- Confidence 99999988765544333232222222 3578999999987654332 37999999999999999999999999996 Q ss_pred CCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 300 GGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARK 379 (945) Q Consensus 300 nGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ee 379 (945) ||++|+|||+.+ +.++++++++++++|.+.+ .|+|+++++++|++|+++++++.|+||+|++++++++ T Consensus 205 ng~~p~gil~~~----------~~l~~e~~~~~~~~~~~~~--~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~ 272 (409) T protein:vir:84 205 DSANPSGILSSD----------ADLTPDQVKQTQKQWIQSH--HNRRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSE 272 (409) T ss_pred cCCCccEEEecC----------CCCCHHHHHHHHHHHHHHh--ccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHH Confidence 567899999874 4689999999999998876 4678999999999999999999999999999999999 Q ss_pred HHHHhcCChhhcccccCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHH Q lcl|Aclame:pro 380 ICAVYQVSPQDVGILEGSNK--ATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNII 457 (945) Q Consensus 380 IA~aFGVPP~lLG~~e~gT~--SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~ 457 (945) ||++|||||++||..+++++ +|+|++.++|+++||.||+++||++++++|.. ...++|+++.....|.++|++++ T Consensus 273 Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~L~~---g~~i~fd~~~l~~~d~~~~~~~~ 349 (409) T protein:vir:84 273 IAMWFRIPPHMIGDVEKSTSWGTGIEEQGINFVRHTLLPWLRCIEQALDTFLPR---GQFVKFNVDGLMRGDVTARFTAY 349 (409) T ss_pred HHHHhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCeEEEechhhhccCHHHHHHHH Confidence 99999999999999887764 88999999999999999999999999998843 22345555556667999999999 Q ss_pred HHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 458 QGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 458 ~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) .+++++|+||+||+|+++|+||+||||+++++.+..++.+.... .+ ..+.++++.++.++ T Consensus 350 ~~~~~~G~~t~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~---------~~----~~~~~~~~~~~gn~ 409 (409) T protein:vir:84 350 QMGLQNGIWSVNEVRAWEDAPPIPEGDIHLQPMNFVPLGYVPPE---------EP----AQEPQPNSATEGNK 409 (409) T ss_pred HHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccccCCcc---------cc----CcCCCCCCccCCCC Confidence 99999999999999999999999999999998876554331110 00 01111112222222 No 35 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=100.00 E-value=6.8e-88 Score=498.45 Aligned_cols=410 Identities=13% Similarity=0.131 Sum_probs=313.5 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhh-hhHHhhhccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLIN-LFRKYRFNNDSKLIKVSEIPKKLTS 140 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~-v~~~~Am~nsaV~aCV~iIA~~IAs 140 (945) .-+++ +|++++..... ++ .+.+... +..+......+ .....++++++|++||++||++||+ T Consensus 1 Mg~~~--~~~~~~~~~~~-----~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~ 62 (423) T protein:vir:81 1 MGFLQ--KLGLAPSVVAT-----PE-PIELVGP----------IFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARNVAS 62 (423) T ss_pred CchhH--hhccccccccC-----cc-ccccccc----------cccccccccchhhHHHHHHhhhHHHHHHHHHHHhHhh Confidence 22222 23333332110 11 1111110 00111111112 3455567899999999999999999 Q ss_pred CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCC--CeEEEEEE Q lcl|Aclame:pro 141 KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQ--GNLVAITP 218 (945) Q Consensus 141 LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~--G~pveL~p 218 (945) +|+++|+++++|. +++..+|++++||++|||+||+++||+. ++.++++.||+|+++.|+.. +.++.|+| T Consensus 63 lp~~~~~~~~dg~-----~~~~~~~~~~~ll~~PN~~~t~~~f~~~----~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p 133 (423) T protein:vir:81 63 LQLQAFERVEDGG-----RERVREGHLARVCKLANSDMTMYDLLER----TMFDLCLYDEFFWLLPGDLGVDTPTLDIRP 133 (423) T ss_pred CceEEEEEecCCc-----eeeeccchHHHHhhcCCCCCCHHHHHHH----HHHHHhhcCCeEEEEEecCCcCcceEEEee Confidence 9999999888765 3456789999999999999999999876 56778899999999988753 56778999 Q ss_pred cCCceeEEEEcCCC--ceEEEEEEe-eCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 219 VDGTTIKPILSEDT--GIVVGYVQE-VDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLD 295 (945) Q Consensus 219 LdPs~Vtv~~d~dG--~~~~~Yv~~-~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~ 295 (945) +++..|++....++ ...|.+... ..++....++++||||++... ++.. .+|+||+..++++++.+.++++++.+ T Consensus 134 ~~~~~v~~~~~~~~~~~~~Y~~~~~~~~~g~~~~~~~~evih~r~~~-~~~~--~~G~spi~~~~~~i~~~~~~~~~~~~ 210 (423) T protein:vir:81 134 IPVSWVQRRAYKDGWGSLDYIIIESGDNDGRSVKVPGERVIHRHGYN-PKTM--KRGKSPVQSLRDILGEQIEAAIFRAQ 210 (423) T ss_pred cccceeeeeeccCCCcceEEEEEEecCCCceEEEEcccceEEecCCC-CCCc--cccccHHHHHHHHHHHHHHHHHHHHH Confidence 99998887766554 333333322 234556788999999987443 3332 36999999999999999999999999 Q ss_pred HHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC--cccCcccccCCCceeeeccCChhhHHHHHHH Q lcl|Aclame:pro 296 YYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG--DYTQVPILSGGKFTWIDFKGKRRDMQFKELA 373 (945) Q Consensus 296 ~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG--~Nagkp~VL~~G~k~~pLs~sp~D~QflE~r 373 (945) +|. ||++|+|||+.+.. ..++++++++++++++.|++.+++ +|+|++++|++|++|++++++++|+||+|++ T Consensus 211 ~f~-ng~~p~gvi~~~~~-----~~~~~l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~ 284 (423) T protein:vir:81 211 MWR-NGPRPGMVIMRDPE-----SKAGKWDAESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTVETT 284 (423) T ss_pred HHh-ccCCCceEEEecCc-----ccCccCCHHHHHHHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHHHHH Confidence 996 57889999987643 224578999999999999999854 6889999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--cceeEEEeechh--hcC Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN--EKDIKLWFKEDD--LEK 449 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~--~~g~~f~fd~~~--l~D 449 (945) ++++++||++|||||++||..+++|++|+|++.++|+++||+||++.||++|+++|++..+ ..+++|+||... ..| T Consensus 285 ~~~~~eIa~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~L~~~~~~~~~~~~~~fd~~~llr~d 364 (423) T protein:vir:81 285 KLSLQTVAQVYGINPTMVGQLDNANYSNVREFRKALYGDNLGSWIRIIQDVMNLFLLPRVGIDNEKFYFEFNLEEKLRAS 364 (423) T ss_pred HhhHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccccccCccEEEecchhhhccC Confidence 9999999999999999999999999999999999999999999999999999999987643 345667776554 469 Q ss_pred HHHHHHHHHHHHh-CCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCC Q lcl|Aclame:pro 450 ERDWWNIIQGQLN-TGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDE 528 (945) Q Consensus 450 ~kerae~~~~~v~-~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd 528 (945) .++|++++.+++. .||||+||+|+++|+||+||||+++++.|..+... .+ ++++ ..+ T Consensus 365 ~~~r~~~~~~~l~~~G~~T~NE~R~~~gl~p~~gGD~~~~p~n~~~~~~------~~------------~~~~----~~~ 422 (423) T protein:vir:81 365 FEEAAEIKRAAVGNVAWMTINEVRAMDNLPSIDGGDDLARPLNTEFGDS------ED------------APGE----EVE 422 (423) T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCCCCcceeecccccccCcc------CC------------CCCC----CCC Confidence 9999999999884 69999999999999999999999988775432110 00 0000 000 Q ss_pred C Q lcl|Aclame:pro 529 N 529 (945) Q Consensus 529 ~ 529 (945) + T Consensus 423 t 423 (423) T protein:vir:81 423 T 423 (423) T ss_pred C Confidence 0 No 36 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=100.00 E-value=6e-88 Score=498.77 Aligned_cols=405 Identities=13% Similarity=0.151 Sum_probs=320.5 Q ss_pred eecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceE Q lcl|Aclame:pro 65 FRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELE 144 (945) Q Consensus 65 ~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~ 144 (945) -+|++++.+.|+.....---++ ...+.....|... ...++.++.|+++++|++||++||++||++||+ T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~v~~~~a~~~~~v~~~i~~Ia~~ia~lp~~ 68 (409) T protein:vir:94 1 MAKENIVTRIKKKLIDNWIDQS---------ASKLYDFSPWKNK---SFWGVINNTLETNETIFSAITKLSNSMASLPLK 68 (409) T ss_pred CcccccchhhhhHHhhhhhcCC---------cccccccccccCc---cccccchhhhhccHHHHHHHHHHHHhhhhCcee Confidence 7888888877764322111111 1111112223322 234577888999999999999999999999999 Q ss_pred EEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCce Q lcl|Aclame:pro 145 IYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTT 223 (945) Q Consensus 145 VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~ 223 (945) +|++++. .+|++++||. +||++||+++||+. ++.+++++||+|+++.|+..|+|++|+||+|++ T Consensus 69 ~~~~~~~-----------~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~ 133 (409) T protein:vir:94 69 MYEDYKV-----------VNTEVSDLLTVSPNNSLSSFDFINQ----IETIRNEKGNAYVLIERDIYHQPSKLFLLNPDV 133 (409) T ss_pred Eeecccc-----------cchhHHHHHhhhcccCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEEEEcCce Confidence 9975432 3599999996 89999999999876 567778999999999999999999999999999 Q ss_pred eEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 224 IKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSI 303 (945) Q Consensus 224 Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~ 303 (945) |++..+.+++..+ |.+...++....++++||||++.....+ +.+|+||+..++++++.+.++++++. .+++.. T Consensus 134 v~v~~~~~~~~~~-y~~~~~~g~~~~~~~~dvih~r~~~~~~---~~~G~s~l~~~~~~i~~~~~~~~~~~---~~~~~~ 206 (409) T protein:vir:94 134 VEMLIENQSRELY-YSIHAATGNKLIVHNMDMLHFKHIVASN---MVQGISPIDVLKNTTDFDNAVRTFNL---TEMQKP 206 (409) T ss_pred eEEEEeCCCcEEE-EEEEcCCceEEEEccccEEEecCCCCCC---ccccccHHHHHHHHHHHHHHHHHHHH---HhcCCC Confidence 9999888776553 4444445556789999999998544332 23799999999999999999988853 345666 Q ss_pred ceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 PEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAV 383 (945) Q Consensus 304 PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~a 383 (945) ++++++. ++.+++++++++++.|++.++ ++|+++++++|++|++++++++|+||+|.+++++++||++ T Consensus 207 ~~~i~~~----------~~~l~~e~~~~~~~~~~~~~~--~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~ 274 (409) T protein:vir:94 207 DSFMLKY----------GSNVGKEKRQQVLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANV 274 (409) T ss_pred CeeEEec----------CCCCCHHHHHHHHHHHHHHhh--cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHH Confidence 7777755 356899999999999998774 6778999999999999999999999999999999999999 Q ss_pred hcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cceeEEEeechh--hcCHHHHHHHHHHH Q lcl|Aclame:pro 384 YQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN-EKDIKLWFKEDD--LEKERDWWNIIQGQ 460 (945) Q Consensus 384 FGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~-~~g~~f~fd~~~--l~D~kerae~~~~~ 460 (945) |||||++||..+++|++|+|++.+.|+++||.|++++||+++|++|++..+ ..+++|+|+... ..|.++++++++++ T Consensus 275 fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~Ll~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~ 354 (409) T protein:vir:94 275 FQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKA 354 (409) T ss_pred hCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHH Confidence 999999999999999999999999999999999999999999998877654 345667776655 46999999999999 Q ss_pred HhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCcc Q lcl|Aclame:pro 461 LNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSS 531 (945) Q Consensus 461 v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~ 531 (945) +++|++|+||+|+++|+||+||||+++++.+.+++..... .+ ....+|+.+.++. T Consensus 355 ~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~-~~---------------~~~kGG~~n~~e~ 409 (409) T protein:vir:94 355 VRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLE-LR---------------KSLKGGDKNVNES 409 (409) T ss_pred HhCCCcCHHHHHHHhCCCCCCCcCeEeecccccccccchh-hc---------------ccccCCCCCcCCC Confidence 9999999999999999999999999999887765532110 00 0011111111111 No 37 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=100.00 E-value=1.9e-87 Score=496.02 Aligned_cols=428 Identities=16% Similarity=0.170 Sum_probs=313.4 Q ss_pred hhccceeeeeeeeeecceeeeccccccc-------cccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhcc Q lcl|Aclame:pro 52 LAWNSTVVYSIIIFRKNQVLKKEKIIVP-------YNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNN 124 (945) Q Consensus 52 ~~~~~~~~~~~~~~k~n~l~kK~K~i~p-------~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~n 124 (945) ..|-.|-+|-.=-+ +| |++++... ..+|.... +-.+. ...+..++++++. .+..+....||++ T Consensus 1 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~lf~~~e~R~~~~--~~~~~-~~~~~~~~~~~~~---~~~~~~~~~al~~ 70 (441) T protein:vir:79 1 MHWYNTDCYFVDFK--SR--KQSRKELVVVGIFYKNEKRDLQY--NEDDL-QMMVQTLPGFQGT---KLRQYKDIEAIRH 70 (441) T ss_pred CccccCcccccccc--cc--ccchhhhhccccccccccccccC--CCcch-HHHHHHhcccCcc---cccccchhhhhcc Confidence 66766666643221 11 11221100 01111100 00000 0001123333322 1235677889999 Q ss_pred HHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEE Q lcl|Aclame:pro 125 DSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAI 203 (945) Q Consensus 125 saV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i 203 (945) ++||+||++||++||++|+++|+.. ++...|++++||+ +|||+||+++||+. ++.+++++||+|+ T Consensus 71 ~~V~~cv~~Ia~~iA~lp~~~~~~~----------~~~~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~ 136 (441) T protein:vir:79 71 SDIFTAVMMIASDLARMPIRVTVNG----------QINYSDRIVNLLNTRPNPMYNGYIFKLV----VFVSALLTSHGYI 136 (441) T ss_pred HHHHHHHHHHHHhhccCceeeecCc----------cccccchHHHHHhcccCcCCCHHHHHHH----HHHHHhhcCCeEE Confidence 9999999999999999999998532 1345799999986 89999999999876 5777889999999 Q ss_pred EEEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeC--CceeeeecccceeeeeeccCCCCccCcccccHHHHHHH Q lcl|Aclame:pro 204 VKIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVD--GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYK 281 (945) Q Consensus 204 ~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~d--G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~ 281 (945) +++|+..|+|++|+||+|+.|++..+.+|...+.|..... ++....++++||||++.+. .++ .+|+||+..+++ T Consensus 137 ~i~r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~-~dg---~~G~spl~~~~~ 212 (441) T protein:vir:79 137 EITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDG---INGLSLLDTLSR 212 (441) T ss_pred EEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEeccCCceeEEEEccccEEEeccCC-CCC---ccccCHHHHHHH Confidence 9999999999999999999999999988877655443322 2345679999999998543 222 369999999999 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeec Q lcl|Aclame:pro 282 VILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDF 360 (945) Q Consensus 282 ~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pL 360 (945) +++.+.++++++.++|. ||++|+|||++++. ..++++++++++.|++.++| .|+|+++|+++|++|+++ T Consensus 213 ~i~~~~~~~~~~~~~f~-ng~~p~gil~~~~~---------~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l 282 (441) T protein:vir:79 213 TIESDNNGKDFLNNFLR-NGTHAGGILKMKGV---------LDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQL 282 (441) T ss_pred HHHHHHHHHHHHHHHHh-ccCCCcEEEEcCCC---------CCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEc Confidence 99999999999999996 57889999988632 23578899999999999998 689999999999999999 Q ss_pred cCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEE Q lcl|Aclame:pro 361 KGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKL 440 (945) Q Consensus 361 s~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f 440 (945) +++++|+||+|++++++++||++|||||++||... +++ +.+++...| .+||+||+++||++||++|.+......++| T Consensus 283 ~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~~-s~~q~~~~~-~~tl~P~~~~ie~eln~kl~~~~~~~~~~f 359 (441) T protein:vir:79 283 EVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET-ANM-SITDANLDY-LSTLKPYITCVCAELNFKFNDEYVNREFKF 359 (441) T ss_pred cCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCC-CCc-cHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCceEEe Confidence 99999999999999999999999999999998643 333 456665555 569999999999999999987654333444 Q ss_pred EeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccc--ccccccccccccchhhccCCCCcccccccCCC Q lcl|Aclame:pro 441 WFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVP--FSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQ 518 (945) Q Consensus 441 ~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~--l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~ 518 (945) +++.....|.++|++++++++++|+||+||+|+++|+||+||||.. +++.+.++.+.... .+ ..+. .. T Consensus 360 d~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~~~~~~~--~~------~~~~--~~ 429 (441) T protein:vir:79 360 DTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDE--YQ------MNKS--RA 429 (441) T ss_pred echhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccccc--cc------cccc--cc Confidence 4445566799999999999999999999999999999999999964 45555554332111 00 0011 11 Q ss_pred CCCCCCCCCCCc Q lcl|Aclame:pro 519 PSQQGGGVDENS 530 (945) Q Consensus 519 ~~~~~g~~dd~e 530 (945) ...+..+.++++ T Consensus 430 ~~~~~kgGe~~e 441 (441) T protein:vir:79 430 TDKKLKGGEENE 441 (441) T ss_pred cccccCCCCCCC Confidence 112222333333 No 38 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=100.00 E-value=1.9e-87 Score=496.02 Aligned_cols=428 Identities=16% Similarity=0.170 Sum_probs=313.4 Q ss_pred hhccceeeeeeeeeecceeeeccccccc-------cccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhcc Q lcl|Aclame:pro 52 LAWNSTVVYSIIIFRKNQVLKKEKIIVP-------YNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNN 124 (945) Q Consensus 52 ~~~~~~~~~~~~~~k~n~l~kK~K~i~p-------~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~n 124 (945) ..|-.|-+|-.=-+ +| |++++... ..+|.... +-.+. ...+..++++++. .+..+....||++ T Consensus 1 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~lf~~~e~R~~~~--~~~~~-~~~~~~~~~~~~~---~~~~~~~~~al~~ 70 (441) T protein:vir:94 1 MHWYNTDCYFVDFK--SR--KQSRKELVVVGIFYKNEKRDLQY--NEDDL-QMMVQTLPGFQGT---KLRQYKDIEAIRH 70 (441) T ss_pred CccccCcccccccc--cc--ccchhhhhccccccccccccccC--CCcch-HHHHHHhcccCcc---cccccchhhhhcc Confidence 66766666643221 11 11221100 01111100 00000 0001123333322 1235677889999 Q ss_pred HHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEE Q lcl|Aclame:pro 125 DSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAI 203 (945) Q Consensus 125 saV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i 203 (945) ++||+||++||++||++|+++|+.. ++...|++++||+ +|||+||+++||+. ++.+++++||+|+ T Consensus 71 ~~V~~cv~~Ia~~iA~lp~~~~~~~----------~~~~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~ 136 (441) T protein:vir:94 71 SDIFTAVMMIASDLARMPIRVTVNG----------QINYSDRIVNLLNTRPNPMYNGYIFKLV----VFVSALLTSHGYI 136 (441) T ss_pred HHHHHHHHHHHHhhccCceeeecCc----------cccccchHHHHHhcccCcCCCHHHHHHH----HHHHHhhcCCeEE Confidence 9999999999999999999998532 1345799999986 89999999999876 5777889999999 Q ss_pred EEEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeC--CceeeeecccceeeeeeccCCCCccCcccccHHHHHHH Q lcl|Aclame:pro 204 VKIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVD--GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYK 281 (945) Q Consensus 204 ~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~d--G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~ 281 (945) +++|+..|+|++|+||+|+.|++..+.+|...+.|..... ++....++++||||++.+. .++ .+|+||+..+++ T Consensus 137 ~i~r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~-~dg---~~G~spl~~~~~ 212 (441) T protein:vir:94 137 EITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDG---INGLSLLDTLSR 212 (441) T ss_pred EEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEeccCCceeEEEEccccEEEeccCC-CCC---ccccCHHHHHHH Confidence 9999999999999999999999999988877655443322 2345679999999998543 222 369999999999 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeec Q lcl|Aclame:pro 282 VILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDF 360 (945) Q Consensus 282 ~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pL 360 (945) +++.+.++++++.++|. ||++|+|||++++. ..++++++++++.|++.++| .|+|+++|+++|++|+++ T Consensus 213 ~i~~~~~~~~~~~~~f~-ng~~p~gil~~~~~---------~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l 282 (441) T protein:vir:94 213 TIESDNNGKDFLNNFLR-NGTHAGGILKMKGV---------LDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQL 282 (441) T ss_pred HHHHHHHHHHHHHHHHh-ccCCCcEEEEcCCC---------CCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEc Confidence 99999999999999996 57889999988632 23578899999999999998 689999999999999999 Q ss_pred cCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEE Q lcl|Aclame:pro 361 KGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKL 440 (945) Q Consensus 361 s~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f 440 (945) +++++|+||+|++++++++||++|||||++||... +++ +.+++...| .+||+||+++||++||++|.+......++| T Consensus 283 ~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~~-s~~q~~~~~-~~tl~P~~~~ie~eln~kl~~~~~~~~~~f 359 (441) T protein:vir:94 283 EVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET-ANM-SITDANLDY-LSTLKPYITCVCAELNFKFNDEYVNREFKF 359 (441) T ss_pred cCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCC-CCc-cHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCceEEe Confidence 99999999999999999999999999999998643 333 456665555 569999999999999999987654333444 Q ss_pred EeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccc--ccccccccccccchhhccCCCCcccccccCCC Q lcl|Aclame:pro 441 WFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVP--FSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQ 518 (945) Q Consensus 441 ~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~--l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~ 518 (945) +++.....|.++|++++++++++|+||+||+|+++|+||+||||.. +++.+.++.+.... .+ ..+. .. T Consensus 360 d~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~~~~~~~--~~------~~~~--~~ 429 (441) T protein:vir:94 360 DTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDE--YQ------MNKS--RA 429 (441) T ss_pred echhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccccc--cc------cccc--cc Confidence 4445566799999999999999999999999999999999999964 45555554332111 00 0011 11 Q ss_pred CCCCCCCCCCCc Q lcl|Aclame:pro 519 PSQQGGGVDENS 530 (945) Q Consensus 519 ~~~~~g~~dd~e 530 (945) ...+..+.++++ T Consensus 430 ~~~~~kgGe~~e 441 (441) T protein:vir:94 430 TDKKLKGGEENE 441 (441) T ss_pred cccccCCCCCCC Confidence 112222333333 No 39 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=100.00 E-value=1.2e-87 Score=497.09 Aligned_cols=534 Identities=19% Similarity=0.261 Sum_probs=351.9 Q ss_pred Ccccccc---c-hhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCccccc- Q lcl|Aclame:pro 20 RPSFSSN---I-KANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEY- 94 (945) Q Consensus 20 ~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~- 94 (945) -|.+-.. | |..|.. |+--+.| ++.-.++.-..+ .++.+.+.+.-+..+.+.+...-..... T Consensus 1 ~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (574) T protein:vir:80 1 MPKWLDKALGIEKSSIEE---------TRNMENY-KMHLREIDTNVV----NNEPYSMESIEKGMNGKTTAYMQPIIGEM 66 (574) T ss_pred CcchhhhhhccchhhHHH---------HHhhhhh-ccccchhhhhhh----hccCCCHHHHHHhHhhhcccccchhhhhc Confidence 1111000 0 000000 1111111 001111111111 2333343322222222222211000000 Q ss_pred -CcccceeccccCCcccc-------hhhh-hhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhccc Q lcl|Aclame:pro 95 -SPESLMYLPSISDPDAF-------FLIN-LFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDAR 165 (945) Q Consensus 95 -s~~sl~~lps~s~p~~~-------~~~~-v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dh 165 (945) ........|++..|... .... +.+...+..++|++|+.+|+.++|+|||+||+++.++.. +.++.+.+| T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~iv~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~--~~~~~~~~~ 144 (574) T protein:vir:80 67 SVNPGYKTKPSIRNSQDLHKTLKKFGNNIILNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEP--TSHDIANIK 144 (574) T ss_pred cccccccCcCccCCcccHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCc--cchhhhhhh Confidence 00000011222222111 1111 223445677889999999999999999999988665432 345678899 Q ss_pred HHHHHHhc----cCccC-ChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceE---EE Q lcl|Aclame:pro 166 NILEFLER----PDPYF-SEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIV---VG 237 (945) Q Consensus 166 pL~~LL~r----PNp~m-T~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~---~~ 237 (945) ++++||++ |||+| |..+|| ++++.+++++|++|++++|+..|+|++||||+|.+|++..+.+|... .. T Consensus 145 ~l~~ll~~~~~~~nP~~~s~~ef~----~~lv~~lll~Gnayi~i~r~~~G~~~~L~pl~p~~V~v~~d~~~~~~~~~~~ 220 (574) T protein:vir:80 145 RIESFLENTAQFRDPNRDNFTTFC----KKLVRATYMYDQVNFEKVFDKDGNFIKFDTVDPTTIFLATNGEGKLIKNGER 220 (574) T ss_pred HHHHHHhccCCCCCCccccHHHHH----HHHHHHHHhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCccccccCceE Confidence 99999964 56665 445554 55788889999999999999999999999999999999988776431 34 Q ss_pred EEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccc Q lcl|Aclame:pro 238 YVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKE 317 (945) Q Consensus 238 Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~ 317 (945) |++..+|+....++++||||+++++.++...++||+|||..++++|..+.++++++.++|. ||++|+|||++++ T Consensus 221 y~~~~~g~~~~~~~~~eiih~~~~~~~~~~~~~~G~spi~~a~~~i~~~~~a~~~~~~~f~-ng~~p~gil~~~~----- 294 (574) T protein:vir:80 221 FVQVIDNRIVAKFNERELAFAVRNPRADIEVGQYGYPELEIALKQFIAHENTEVFNDRFFS-HGGTTRGILHVKT----- 294 (574) T ss_pred EEEEeCCceEEEEccccEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCceEEEeCC----- Confidence 6677788888899999999999998887777789999999999999999999999999996 5678999999854 Q ss_pred cccchhccHHHHHHHHHHHHHHhcC-cccCcc-cccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhccccc Q lcl|Aclame:pro 318 GDIYPQLSREQLESIQRQLQAIMMG-DYTQVP-ILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILE 395 (945) Q Consensus 318 ~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp-~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e 395 (945) +..+++++++++++.|++.++| .|+|++ +++++|++|+++++++.|+||+|++++++++||++|||||++||+.+ T Consensus 295 ---~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~D~qfle~~~~~~~~Ia~afgVPp~~lG~~~ 371 (574) T protein:vir:80 295 ---GQQQSQQALDIFRREWRSSLAGINGSWQIPVVSAEDVKFVNMTPSANDMQFEKWLNYLINVISALYGIDPAEINFPN 371 (574) T ss_pred ---CCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccc Confidence 2468999999999999999988 688875 66689999999999999999999999999999999999999999876 Q ss_pred CC----------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 396 GS----------NKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGF 465 (945) Q Consensus 396 ~g----------T~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~Gi 465 (945) ++ |++|+|++...|+++||+||+++||++||++|++..+ .+++|+|+..++.+..+.+++ ..++++|+ T Consensus 372 ~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~-~~~~~~f~~~d~~~~~~~~~~-~~~~~~G~ 449 (574) T protein:vir:80 372 NGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVAEFG-EKYQFQFRGGDLSAQLDKLKI-IEQEGKVF 449 (574) T ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC-CceEEEecccchhhHHHHHHH-HHHHhCCc Confidence 54 4689999999999999999999999999999887655 457899988877765555544 35778999 Q ss_pred cCHHHHHHHHhCCCCCCccccccccccccccccchhhccC------CCCcccccccCCCCCCCCCCCCCCccccchhHHH Q lcl|Aclame:pro 466 RSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQG------AMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNA 539 (945) Q Consensus 466 mT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~------a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a 539 (945) ||+||+|+++|+||+||||.++++.+..+........+.. .......+.+++.+.++.....+.+....+.... T Consensus 450 lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~ 529 (574) T protein:vir:80 450 RTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQDRLNRLLELSGGDVEQPEPEEPKDSQNDTDVSFQD 529 (574) T ss_pred cCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchhccccccccccCCCCCCCCCCCCCCccccccchhhh Confidence 9999999999999999999999987765543221111100 0000111111111111111111111111222223 Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhccCCccccccchHHHHHHHHhhhhH Q lcl|Aclame:pro 540 GLEVLRNLFKSLDANASENLKQVIELTNDDNYLKEKELLTRVLKSVGLD 588 (945) Q Consensus 540 ~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~e~~~~~~~~~~~~~~ 588 (945) ..+..++......++..+...++.++.+.+|+..- ++..++.-++ T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 574 (574) T protein:vir:80 530 EQQGLNGKSKKVNGKVDDNVGKDGQLKSEENTNST----KHGTDGIKKE 574 (574) T ss_pred hhhhhccchhhhcCCcccccccccccccccccccc----cccCccccCC Confidence 33334555555555555556666666666665421 1111111111 No 40 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=100.00 E-value=2.7e-87 Score=495.21 Aligned_cols=425 Identities=17% Similarity=0.188 Sum_probs=313.3 Q ss_pred hhccceeeeeeeee-e-cce-------eeeccccccccccccCCCCCcccccCcccc-eeccccCCcccchhhhhhHHhh Q lcl|Aclame:pro 52 LAWNSTVVYSIIIF-R-KNQ-------VLKKEKIIVPYNHQEPPFKFNLFEYSPESL-MYLPSISDPDAFFLINLFRKYR 121 (945) Q Consensus 52 ~~~~~~~~~~~~~~-k-~n~-------l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl-~~lps~s~p~~~~~~~v~~~~A 121 (945) ..|-.|-+|-.=-+ | .|+ +|+|+. +|.... .......+ ..++++++. .+..+....| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e------~r~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~a 67 (441) T protein:vir:98 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNE------KRDLQY----NEDDLQMMVQTLPGFQGT---KLRQYKDIEA 67 (441) T ss_pred CceecCccceeccccccchhhhhhccccccccc------cccccC----CCcchHHHHHHhhccccc---Cccccchhhh Confidence 66666666643211 1 111 111111 111000 00000011 122333322 1235777889 Q ss_pred hccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 122 FNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDR 200 (945) Q Consensus 122 m~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gn 200 (945) |++++||+||++||++||++|+++|+.. ++...|++++||+ +|||+||+++||+. ++.++++.|| T Consensus 68 l~~~~V~acv~~Ia~~iA~lpl~~~~~~----------~~~~~~~~~~lL~~~PN~~~t~~~f~~~----l~~~lll~Gn 133 (441) T protein:vir:98 68 IRHSDIFTAVMMIASDLARMPIRVTVNG----------QINYSDRIVNLLNTRPNPMYNGYIFKLV----VFVSALLTSH 133 (441) T ss_pred hccHHHHHHHHHHHHhhccCceEEecCC----------cccccchHHHHHhcccccCCCHHHHHHH----HHHHHhhcCC Confidence 9999999999999999999999998632 1345799999986 89999999999876 5777889999 Q ss_pred eEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeC--CceeeeecccceeeeeeccCCCCccCcccccHHHH Q lcl|Aclame:pro 201 GAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVD--GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEI 278 (945) Q Consensus 201 a~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~d--G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~a 278 (945) +|++++|+..|+|++|+|++|++|++..+.+|...+.|+.... ++....++++||||++.+. .++ .+|+||+.. T Consensus 134 ay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~dviHir~~~-~dg---~~G~spi~~ 209 (441) T protein:vir:98 134 GYIEITRDKTGEPMNLTFRKTSEIELKLDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDG---INGLSLLDT 209 (441) T ss_pred eEEEEEEcCCCcEEEEEEEcCceeEEEECCCCcEEEEEEEeccCcceeeEEEccccEEEeccCC-CCC---ccccCHHHH Confidence 9999999999999999999999999999999887765543322 2345679999999998543 222 369999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCcee Q lcl|Aclame:pro 279 LYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTW 357 (945) Q Consensus 279 a~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~ 357 (945) ++++++.+.++++++.++|. ||++|+|||++++. ..++++++++++.|++.++| .|+|+++++++|++| T Consensus 210 ~~~~i~~~~a~~~~~~~~f~-ng~~~~gil~~~~~---------~~~~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~ 279 (441) T protein:vir:98 210 LSRTIESDNNGKDFLNNFLR-NGTHAGGILKMKGV---------LDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTF 279 (441) T ss_pred HHHHHHHHHHHHHHHHHHHh-ccCCCcEEEEeCCC---------CCCHHHHHHHHHHHHHHhcCccccCcceecCCCceE Confidence 99999999999999999996 57789999988632 12578899999999999998 789999999999999 Q ss_pred eeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccce Q lcl|Aclame:pro 358 IDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKD 437 (945) Q Consensus 358 ~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g 437 (945) ++++++++|+||+|++++++++||++|||||++||... ++ ++.+++...|. +||+||+++||++||++|.+...... T Consensus 280 ~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~-~~-~s~~q~~~~y~-~tl~P~~~~ie~~ln~~L~~~~~~~~ 356 (441) T protein:vir:98 280 DQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET-AN-MSITDANLDYL-STLKPYITCVCAELNFKFNDEYVNRE 356 (441) T ss_pred EEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCC-CC-ccHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccCce Confidence 99999999999999999999999999999999998633 23 35567766665 69999999999999999987654434 Q ss_pred eEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccc--ccccccccccccchhhccCCCCccccccc Q lcl|Aclame:pro 438 IKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVP--FSGLRNWKPEDEQAKAQQGAMPPQLAQAM 515 (945) Q Consensus 438 ~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~--l~~~n~~~ped~~a~~~~~a~~~~~~~~~ 515 (945) ++|+.+.....|.++|++++++++++|++|+||+|+++|+||+||||.. +++.+.++.+.... .+ ..++. T Consensus 357 ~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGd~~~~~~~~n~~~~~~~~~--~q------~~~~~ 428 (441) T protein:vir:98 357 FKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDE--YQ------MNKSR 428 (441) T ss_pred EEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccccc--cc------ccccc Confidence 4444445566799999999999999999999999999999999999964 45555544332110 00 11111 Q ss_pred CCCCCCCCCCCCCCc Q lcl|Aclame:pro 516 ADQPSQQGGGVDENS 530 (945) Q Consensus 516 ~d~~~~~~g~~dd~e 530 (945) .. .....+.++++ T Consensus 429 ~~--~~~~kgGe~ne 441 (441) T protein:vir:98 429 AT--DKKLKGGEENE 441 (441) T ss_pred cc--ccccCCCCCCC Confidence 11 11122222332 No 41 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=100.00 E-value=2.2e-86 Score=490.16 Aligned_cols=506 Identities=20% Similarity=0.236 Sum_probs=342.6 Q ss_pred CchhhhHhhhheeccccccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecce-eeeccccccc Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQ-VLKKEKIIVP 79 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~-l~kK~K~i~p 79 (945) |+.--+|.|-|.. .+||- +++..++ ++++-++|-|.+... .+.|-+.... T Consensus 1 ~~~~~~~~~~~~~----~~~~~--~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~k~~~~~~ 51 (551) T protein:vir:80 1 MKNKLGLFESIRL----VGVNK--SDAVKHI-----------------------EVDDNYSIAIQQREQEQISKAMNNKE 51 (551) T ss_pred CchhhhhHHHhhh----ccCCh--hhccccc-----------------------ccccceeeecccccHHHHHHhhccCc Confidence 6665566666551 12221 1111111 223334433222111 1111111000 Q ss_pred cccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC-----------ceEEEEe Q lcl|Aclame:pro 80 YNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK-----------ELEIYKH 148 (945) Q Consensus 80 ~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL-----------P~~VyRr 148 (945) -+-..|. ...+ +.. ......|++..+ .....+.+.+..+|+|++||++||++||++ +|.+..+ T Consensus 52 ~a~~~~~-~~~~-~~~-~~~~~r~~~~~~---~~l~~~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~k 125 (551) T protein:vir:80 52 VAYSQPV-IGSM-SAN-PGFKTKPSIRNN---QDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLK 125 (551) T ss_pred ceeeccc-ccce-ecC-cccccCccccCh---hHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEec Confidence 0000111 0000 000 001111221111 111223345567899999999999999984 5554322 Q ss_pred ccCcccccccchhhcccHHHHHHhccCccCChH-HHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEE Q lcl|Aclame:pro 149 IEDKHVNYYLKRIRDARNILEFLERPDPYFSEV-NSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPI 227 (945) Q Consensus 149 tedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~-eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~ 227 (945) ..+ .+.........+.+..+|.+||++|++. +.|.+|+++++.+++++||+|++++|+..|+|++||||+|.+|++. T Consensus 126 d~~--~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~~~f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~ 203 (551) T protein:vir:80 126 DLD--KKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFA 203 (551) T ss_pred ccC--cccChhHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEE Confidence 222 2222334456678889999999997654 3556678889999999999999999999999999999999999999 Q ss_pred EcCCCceE---EEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc Q lcl|Aclame:pro 228 LSEDTGIV---VGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIP 304 (945) Q Consensus 228 ~d~dG~~~---~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~P 304 (945) .+.+|... ..|++..+|+....++++||||+++++.++...++||+|||.+++.++..+.++++++.++|. ||++| T Consensus 204 ~~~~g~~~~~~~~y~~~~~g~~~~~~~~~eiiH~~~n~~~~~~~~~~G~spi~~a~~~i~~~~a~~~~~~~~f~-Ng~~p 282 (551) T protein:vir:80 204 TTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFS-HGGTT 282 (551) T ss_pred ECCccccccCceEEEEEeCCcEEEEEcccceEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH-cCCCc Confidence 99888542 457777788888889999999999888777766779999999999999999999999999996 57799 Q ss_pred eEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccc-cCCCceeeeccCChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 305 EGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPIL-SGGKFTWIDFKGKRRDMQFKELAEFVARKICA 382 (945) Q Consensus 305 sGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~V-L~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~ 382 (945) +|||++++ +..++++++++++++|++.++| +|+|++++ +++|++|+++++++.|+||+|++++++++||+ T Consensus 283 ~giL~~~~--------~~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~ 354 (551) T protein:vir:80 283 RGILQIKA--------AQQQSQHALEIFKREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVISA 354 (551) T ss_pred ceEEEEcC--------CCCCCHHHHHHHHHHHHHHhcCccccCccccccCCCceEEEccCChhHHHHHHHHHHHHHHHHH Confidence 99999863 2458999999999999999988 68888654 57899999999999999999999999999999 Q ss_pred HhcCChhhcccccCC----------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHH Q lcl|Aclame:pro 383 VYQVSPQDVGILEGS----------NKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERD 452 (945) Q Consensus 383 aFGVPP~lLG~~e~g----------T~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~ke 452 (945) +|||||++||+.+++ |++|++++...|+++||+||+.+||++||++|++..+ ..++|+|+..+..+..+ T Consensus 355 aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~-~~~~f~f~~~~~~~~~~ 433 (551) T protein:vir:80 355 LYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEFG-DKYTFQFVGGDIKSELE 433 (551) T ss_pred HhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC-CceEEEeeccChhhHHH Confidence 999999999986553 7899999999999999999999999999999987665 46899999998888888 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHHhCCC-CCCccccccccccccccccchhhc-----cCCCCc----cccccc-CCCCC- Q lcl|Aclame:pro 453 WWNIIQGQLNTGFRSINEARMEKGLEP-VPWGDVPFSGLRNWKPEDEQAKAQ-----QGAMPP----QLAQAM-ADQPS- 520 (945) Q Consensus 453 rae~~~~~v~~GimT~NEaRe~lGlpP-veGGD~~l~~~n~~~ped~~a~~~-----~~a~~~----~~~~~~-~d~~~- 520 (945) ++++++ ++.+|+||+||+|+++|+|| +||||.++.+.+..+......... +.+..+ ..++.. ++++. T Consensus 434 ~~~~~~-~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (551) T protein:vir:80 434 SVKILA-EKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDI 512 (551) T ss_pred HHHHHH-HHhcCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCcchhhhhhccccccCcCCCCCCCCCCCC Confidence 888765 66789999999999999998 799999987765543321111110 000000 000000 00000 Q ss_pred -----CCCCCCCCCccccchhHHHHHHHHHHHHhhhhhhhhHHHHHhhcc Q lcl|Aclame:pro 521 -----QQGGGVDENSSVPSEQKNAGLEVLRNLFKSLDANASENLKQVIEL 565 (945) Q Consensus 521 -----~~~g~~dd~e~~~se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl 565 (945) ..++.+++++......++++.++.+|..++ +++- T Consensus 513 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 551 (551) T protein:vir:80 513 PDGKDTTGDIGKDGQRKDKDNANAGKQGMKGDKPN-----------DWQT 551 (551) T ss_pred CCccccCCCccccccccCccccchhhhhcCCCCcc-----------ccCC Confidence 011111222222233445555555542221 0000 No 42 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=100.00 E-value=1.4e-86 Score=491.27 Aligned_cols=485 Identities=18% Similarity=0.225 Sum_probs=331.3 Q ss_pred CCCcchhhhhhhhhccceeeeeeeeeecceee------eccc---ccccccc--ccCCCCCcccccCcccceeccccCCc Q lcl|Aclame:pro 40 YPGFKPLLTYRALAWNSTVVYSIIIFRKNQVL------KKEK---IIVPYNH--QEPPFKFNLFEYSPESLMYLPSISDP 108 (945) Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~------kK~K---~i~p~~~--r~pp~~f~L~~~s~~sl~~lps~s~p 108 (945) ..-.|-| |. .+|.+- ||+.+. .|.+ .+-|... |..-.-..+.++.|..+...|++... T Consensus 1 ~~~~~~~---~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 69 (535) T protein:vir:10 1 MAILKDL---RN-------AFSLSN-KKSTSYIELGDYDKDIVNKAIRPGRASARDTVDGIDIADGNVAGQYSVASISDV 69 (535) T ss_pred ChhhHHH---HH-------HHHhhh-hhhhhhHHHhhhhHHHHHhhhhhhhhhhhccccccccccCCcccccccCccccc Confidence 0000111 10 111111 111110 0111 1111111 11111122333333334433443332 Q ss_pred ccc----------hhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCcc Q lcl|Aclame:pro 109 DAF----------FLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPY 177 (945) Q Consensus 109 ~~~----------~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~ 177 (945) ..+ ..++....++.+..++|+||.++++.++++|+++|+.+..+. .++++++|+++++|+ +||++ T Consensus 70 ~~~~~l~~~~~~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~----~~~~~~~~~l~~lL~~~PN~~ 145 (535) T protein:vir:10 70 LSTKKLLKAYADNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATKVMS----KAQIKRAHEIEDFIYNTGSEY 145 (535) T ss_pred cCHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhcccCcceeEEEeccCCCc----chhhhhhhHHHHHHHhCCCCC Confidence 111 011223355667888999999999999999999997765542 345678899999886 89999 Q ss_pred CChHHHHHHHHHHHHHHHhccC-CeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCce-EEEEEEeeCCceeeeecccce Q lcl|Aclame:pro 178 FSEVNSWEYLLGMVLDDILTID-RGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGI-VVGYVQEVDGAIVAHFDKRDV 255 (945) Q Consensus 178 mT~~eFwetli~~Lv~dlLl~G-na~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~-~~~Yv~~~dG~~~~~~~a~DV 255 (945) |++++||++|+++++.+++++| ++|+++.++..|+|++||||+|.+|++..+.++.. ...|++..+++....++++|| T Consensus 146 ~~~~~~~~~~~~~lv~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ei 225 (535) T protein:vir:10 146 YEWRDTFPRLLTKIINDMYVQDQINIERIFKNDSNELDHFNAVDASKVVISYSPRSKDQPRKFEQFVSETKSVKFSERNL 225 (535) T ss_pred CChhHHHHHHHHHHHHHHHhhCCceEEEEEECCCCcEEEEEEeCCceeEEEEcCccccCceEEEEEecCceeEEECcccE Confidence 9999999999999999987766 56888899999999999999999999988876632 223455566777788999999 Q ss_pred eeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHH Q lcl|Aclame:pro 256 VLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQ 335 (945) Q Consensus 256 Ih~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~ 335 (945) ||+++++.++...++||+|||.+++++|+.+.++++++.++|. ||++|+|||+++.. ....++++++++++++ T Consensus 226 ih~~~~~~~~~~~~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~-ng~~p~giL~~~~~------~~~~ls~e~~e~lk~~ 298 (535) T protein:vir:10 226 TFINYWNLSDTDRRGYGYSPVEASIPLIRAIYDTEQFNARFFS-QGGTTRGILVIDQD------GDAQANQMMLAGIRRQ 298 (535) T ss_pred EEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHh-ccCCccEEEEecCC------CCcccCHHHHHHHHHH Confidence 9999988777776789999999999999999999999999996 57789999998642 2357899999999999 Q ss_pred HHHHhcC-cccCccccc-CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCccc------------ Q lcl|Aclame:pro 336 LQAIMMG-DYTQVPILS-GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKAT------------ 401 (945) Q Consensus 336 we~~~sG-~Nagkp~VL-~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN------------ 401 (945) |++.++| +|+|+++|+ ++|++|+++++++.|+||+|++++++++||++|||||++||+.+++||+| T Consensus 299 ~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~eIa~afgVPp~~lG~~~~at~sn~~~~~~~~~~s~ 378 (535) T protein:vir:10 299 WTSQGSGLGGAWKIPILAAKDAKFVNMTQNSRDMEFDKFLNFMIYDTAAIFQMQPEEINFPNNGGSTGKSGTKSVNEGST 378 (535) T ss_pred HHHHhcCcccccccccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccCcccccchhhhhhhhhhh Confidence 9999998 688886554 57999999999999999999999999999999999999999999888765 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCC Q lcl|Aclame:pro 402 AEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVP 481 (945) Q Consensus 402 ~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPve 481 (945) +|++...|+++||+||+++||++||++|++..+ .+++|+|+.....|.++++++++.+. +|+||+||+|+++|+||+| T Consensus 379 ~E~~~~~~~~~~L~P~l~~ie~~ln~~Ll~~~~-~~~~f~f~~l~~~d~~~r~~~~~~~~-~g~lT~NE~R~~~gl~pie 456 (535) T protein:vir:10 379 AKAKLESSKDKGLTPLLSFIEQVINDKIMRYVD-TDYRFSFTLGDAQDKLQEEQVWKLKL-ANGYFINEYRKDHGLKTVD 456 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC-CeEEEEeccccccCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCCCC Confidence 567778899999999999999999999988665 46899999999999999999987665 5779999999999999999 Q ss_pred CccccccccccccccccchhhccCCCCcccccccCC------------CCCCCCCCCCCCccccchhHHHHHHHHHHHHh Q lcl|Aclame:pro 482 WGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMAD------------QPSQQGGGVDENSSVPSEQKNAGLEVLRNLFK 549 (945) Q Consensus 482 GGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d------------~~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k 549 (945) |||.++.........+....+ ....+++....+.+ ....+.+.++.+.+.+...+. T Consensus 457 gGD~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~q~~~~~~~~~~~g~~~~~~~~~~~~~~----------- 524 (535) T protein:vir:10 457 GLDVPGFIGSAENFINATGFG-QPNVPDSSDDSGSTLGERERQERIQHSKDYEKGKDDPKSPLPKPSES----------- 524 (535) T ss_pred Cccccccccchhhcccccccc-cccCCCCCCCccccCCccccCcccccccccccCCCCCCCCCCcCCCC----------- Confidence 999876533211111100000 00001000000000 000001111111110000000 Q ss_pred hhhhhhhHHHHHhhccCCccccccchHHHH Q lcl|Aclame:pro 550 SLDANASENLKQVIELTNDDNYLKEKELLT 579 (945) Q Consensus 550 ~l~a~~~~~~~~~~dl~n~~~~l~e~~~~~ 579 (945) -|.+.. ++.+. T Consensus 525 -------------~~~~~~------~~~~~ 535 (535) T protein:vir:10 525 -------------DDVSNN------EDADT 535 (535) T ss_pred -------------Cccccc------cccCC Confidence 001100 01111 No 43 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=100.00 E-value=1.3e-85 Score=485.99 Aligned_cols=410 Identities=17% Similarity=0.168 Sum_probs=309.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-||+|.. |+.... ++.. .......+++|++.. +..++...|+++++||+||++||++||++ T Consensus 1 Mg~f~~~~-----~r~~~~----~~~~------~~~~~~~~~~~~~~~---~~~~~~~~al~~~~v~~cv~~Ia~~iA~~ 62 (416) T protein:vir:81 1 MGIFYKNE-----KRDLQY----NEDD------LQMMVQTLPGFQGTK---LRQYKDIEAIRHSDIFTAVMMIASDLARM 62 (416) T ss_pred CCcccccc-----cccccC----CCcc------hhHHHHHhccccccC---ccccchhhhhcchHHHHHHHHHHHhhccC Confidence 55565432 221111 1111 001112244544322 33566788999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|+..+ ....|++++||+ +|||+||+++||+. ++.++++.||+|+++.|+..|+|++|+||+ T Consensus 63 p~~~~~~~~----------~~~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gna~~~i~r~~~G~~~~L~~i~ 128 (416) T protein:vir:81 63 PIRVTVNGQ----------INYSDRIVNLLNTRPNPMYNGYIFKLV----VFVSALLTSHGYIEITRDKTGEPMNLTFRK 128 (416) T ss_pred ceEEecCcc----------ccccchHHHHHhcccccCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEEEEc Confidence 999985321 335789999886 89999999999876 567778999999999999999999999999 Q ss_pred CceeEEEEcCCCceEEEEEEeeC--CceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVD--GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYR 298 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~d--G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~ 298 (945) |++|++..+.+|...+.|..... ++....++++||||++.+. .++ .+|+||+..++++++.+.++++++.++|. T Consensus 129 ~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~evihir~~~-~d~---~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ 204 (416) T protein:vir:81 129 TSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDG---INGLSLLDTLSRTIESDNNGKDFLNNFLR 204 (416) T ss_pred CceeEEEECCCccEEEEEEEecCCCceeEEEEccccEEEeccCC-CCC---ccccCHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999988887665543322 2345679999999997543 232 37999999999999999999999999996 Q ss_pred hCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHH Q lcl|Aclame:pro 299 KGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVA 377 (945) Q Consensus 299 nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ 377 (945) ||++|+|||++++. ..++++++++++.|++.++| .|+|+++++++|++|++++++++|+||+|++++++ T Consensus 205 -ng~~~~gil~~~~~---------~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~ 274 (416) T protein:vir:81 205 -NGTHAGGILKMKGV---------LDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSST 274 (416) T ss_pred -ccCCCcEEEEeCCC---------CCCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHH Confidence 57789999988632 23578899999999999998 68999999999999999999999999999999999 Q ss_pred HHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHH Q lcl|Aclame:pro 378 RKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNII 457 (945) Q Consensus 378 eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~ 457 (945) ++||++|||||+++|... ++ ++.+++...| .+||+|++++||+++|++|.+......++|+++.....|.+++++++ T Consensus 275 ~~Ia~~fgVPp~~lg~~~-~~-~~~~~~~~~~-~~~l~P~~~~ie~~ln~~l~~~~~~~~~~f~~~~l~~~D~~~~~~~~ 351 (416) T protein:vir:81 275 REIAGVFGIPLHKFGIET-AN-MSITDANLDY-LSTLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEID 351 (416) T ss_pred HHHHHHhCCCHHHcCCCC-CC-ccHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCceEEEechhhhccCHHHHHHHH Confidence 999999999999998633 23 3456665555 56999999999999999998765444445555555667999999999 Q ss_pred HHHHhCCCcCHHHHHHHHhCCCCCCccc--cccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 458 QGQLNTGFRSINEARMEKGLEPVPWGDV--PFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 458 ~~~v~~GimT~NEaRe~lGlpPveGGD~--~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) ++++++|+||+||+|+++|+||+||||. ++++.+.++... ..+. +..+.. ....+..+.++++ T Consensus 352 ~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~-~~~~-------~~~~~~--~~~~~~kgGe~n~ 416 (416) T protein:vir:81 352 KINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIEL-VDEY-------QMNKSR--ATDKKLKGGEENE 416 (416) T ss_pred HHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeeccccccccc-cccc-------Cccccc--ccccccCCCCCCC Confidence 9999999999999999999999999985 444454444332 1110 011111 1111222333333 No 44 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=100.00 E-value=1.3e-85 Score=485.99 Aligned_cols=410 Identities=17% Similarity=0.168 Sum_probs=309.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-||+|.. |+.... ++.. .......+++|++.. +..++...|+++++||+||++||++||++ T Consensus 1 Mg~f~~~~-----~r~~~~----~~~~------~~~~~~~~~~~~~~~---~~~~~~~~al~~~~v~~cv~~Ia~~iA~~ 62 (416) T protein:vir:45 1 MGIFYKNE-----KRDLQY----NEDD------LQMMVQTLPGFQGTK---LRQYKDIEAIRHSDIFTAVMMIASDLARM 62 (416) T ss_pred CCcccccc-----cccccC----CCcc------hhHHHHHhccccccC---ccccchhhhhcchHHHHHHHHHHHhhccC Confidence 55565432 221111 1111 001112244544322 33566788999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|+..+ ....|++++||+ +|||+||+++||+. ++.++++.||+|+++.|+..|+|++|+||+ T Consensus 63 p~~~~~~~~----------~~~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gna~~~i~r~~~G~~~~L~~i~ 128 (416) T protein:vir:45 63 PIRVTVNGQ----------INYSDRIVNLLNTRPNPMYNGYIFKLV----VFVSALLTSHGYIEITRDKTGEPMNLTFRK 128 (416) T ss_pred ceEEecCcc----------ccccchHHHHHhcccccCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEEEEc Confidence 999985321 335789999886 89999999999876 567778999999999999999999999999 Q ss_pred CceeEEEEcCCCceEEEEEEeeC--CceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVD--GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYR 298 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~d--G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~ 298 (945) |++|++..+.+|...+.|..... ++....++++||||++.+. .++ .+|+||+..++++++.+.++++++.++|. T Consensus 129 ~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~evihir~~~-~d~---~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ 204 (416) T protein:vir:45 129 TSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDG---INGLSLLDTLSRTIESDNNGKDFLNNFLR 204 (416) T ss_pred CceeEEEECCCccEEEEEEEecCCCceeEEEEccccEEEeccCC-CCC---ccccCHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999988887665543322 2345679999999997543 232 37999999999999999999999999996 Q ss_pred hCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHH Q lcl|Aclame:pro 299 KGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVA 377 (945) Q Consensus 299 nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ 377 (945) ||++|+|||++++. ..++++++++++.|++.++| .|+|+++++++|++|++++++++|+||+|++++++ T Consensus 205 -ng~~~~gil~~~~~---------~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~ 274 (416) T protein:vir:45 205 -NGTHAGGILKMKGV---------LDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSST 274 (416) T ss_pred -ccCCCcEEEEeCCC---------CCCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHH Confidence 57789999988632 23578899999999999998 68999999999999999999999999999999999 Q ss_pred HHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHH Q lcl|Aclame:pro 378 RKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNII 457 (945) Q Consensus 378 eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~ 457 (945) ++||++|||||+++|... ++ ++.+++...| .+||+|++++||+++|++|.+......++|+++.....|.+++++++ T Consensus 275 ~~Ia~~fgVPp~~lg~~~-~~-~~~~~~~~~~-~~~l~P~~~~ie~~ln~~l~~~~~~~~~~f~~~~l~~~D~~~~~~~~ 351 (416) T protein:vir:45 275 REIAGVFGIPLHKFGIET-AN-MSITDANLDY-LSTLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEID 351 (416) T ss_pred HHHHHHhCCCHHHcCCCC-CC-ccHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCceEEEechhhhccCHHHHHHHH Confidence 999999999999998633 23 3456665555 56999999999999999998765444445555555667999999999 Q ss_pred HHHHhCCCcCHHHHHHHHhCCCCCCccc--cccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 458 QGQLNTGFRSINEARMEKGLEPVPWGDV--PFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 458 ~~~v~~GimT~NEaRe~lGlpPveGGD~--~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) ++++++|+||+||+|+++|+||+||||. ++++.+.++... ..+. +..+.. ....+..+.++++ T Consensus 352 ~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~-~~~~-------~~~~~~--~~~~~~kgGe~n~ 416 (416) T protein:vir:45 352 KINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIEL-VDEY-------QMNKSR--ATDKKLKGGEENE 416 (416) T ss_pred HHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeeccccccccc-cccc-------Cccccc--ccccccCCCCCCC Confidence 9999999999999999999999999985 444454444332 1110 011111 1111222333333 No 45 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=100.00 E-value=2.2e-85 Score=484.70 Aligned_cols=402 Identities=12% Similarity=0.056 Sum_probs=309.0 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-.| ++.+... ..+. ..+..+. .+.. ...+...+||++++||+||++||++||++ T Consensus 1 m~~f------~~~~~~~-----~~~~---------~~~~~~~--~~~~---~~~~~~~~Al~~~~V~~~i~~Ia~~iA~l 55 (406) T protein:vir:97 1 MSFF------QPLGTSK-----VSYD---------DYISSVL--AGDV---SQKYLGVSALKNSDILTATSIIAGDIARF 55 (406) T ss_pred Cccc------cccCCCC-----CCcc---------hHHHHHh--cCCC---CcccccchhhccHHHHHHHHHHHHhhhhC Confidence 2222 2221100 0000 0011110 0000 11344556899999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC-CCeEEEEEEc Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE-QGNLVAITPV 219 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~-~G~pveL~pL 219 (945) |+++++.+.+ +..+|++++||+ +|||+||+++||+. ++.++++.|++|+++.|+. .|++.+|+|+ T Consensus 56 p~~~~~~~g~---------~~~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i 122 (406) T protein:vir:97 56 PLVKKDVNGD---------IIHDEDINYLLNVKSTSNASARTWKFA----MAVNAILTGNSFSRILRDPKTNQALQFQFY 122 (406) T ss_pred eeEEEecCcc---------ccccchHHHHhhccCCCCCCHHHHHHH----HHHHHhhcCCeEEEEEecCCCCeEEEEEEE Confidence 9988753321 345799999996 89999999999876 5677789999999999984 7999999999 Q ss_pred CCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 220 DGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRK 299 (945) Q Consensus 220 dPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~n 299 (945) +|+.|++..+++|...|.|.. ..++....++++||||++.+. .++ .+|+||+.+++++++.+.++++++.++|.| T Consensus 123 ~p~~v~v~~~~~~~~~y~~~~-~~~~~~~~~~~~evih~r~~~-~dg---~~G~spi~~~~~~i~~~~a~~~~~~~~f~n 197 (406) T protein:vir:97 123 RPSETTVEETDNHEIVYTFTD-MLTAKQVKCFAHDVIHWKFFS-HDT---ILGRSPLLSLGDEIDLQTGGINTLIKFFKD 197 (406) T ss_pred CCCeeEEEEcCCceEEEEEEe-cCCceEEEEccccEEEecCCC-CCC---cccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 999999998888877765543 445566789999999998543 222 359999999999999999999999999965 Q ss_pred CCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 300 GGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARK 379 (945) Q Consensus 300 nGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ee 379 (945) |++|++++.. ++.+++++++++++.|++.++|.|+|+++|+++|++|++++++++|+||+|++++++++ T Consensus 198 -g~~~~~i~~~----------~~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~ 266 (406) T protein:vir:97 198 -GFSSGILTMK----------GAQLSGDARQRARQEFEKMREGSVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQ 266 (406) T ss_pred -cCCCceEEec----------CCCCCHHHHHHHHHHHHHHhcccccCceeecCCCceEEEccCCHHHHHHHHHHHhhHHH Confidence 6788877654 34689999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHH Q lcl|Aclame:pro 380 ICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQG 459 (945) Q Consensus 380 IA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~ 459 (945) ||++|||||++||. .++++|++++...|++.||+||+++||++++++|++.....+++++|+.. .+.+.+++.+.+ T Consensus 267 Ia~afgVPp~~lg~--~~~~~~~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~--~~~~~~~~~~~~ 342 (406) T protein:vir:97 267 IAKALRVPSYKLGV--NSPNQSVAQLMEDYVTNDLPFYFDAITSELGLKTLNDKDRRLYHIEFDTR--SVTGRNVDEIVK 342 (406) T ss_pred HHHHhCCCHHHcCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhhccceeEEEecC--ccchhhHHHHHH Confidence 99999999999985 55788999999999999999999999999999888766566777888753 456778889999 Q ss_pred HHhCCCcCHHHHHHHHhCCCCCC--ccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 460 QLNTGFRSINEARMEKGLEPVPW--GDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 460 ~v~~GimT~NEaRe~lGlpPveG--GD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) ++++|+||+||+|+++|+||++| ||.++++.|.+++.... ..+. . .......++.+ +.++++ T Consensus 343 ~~~~g~~T~NE~R~~~g~~p~~~~~gD~~~~~~n~~~~~~~~-~~~~-~------~~~~~~gg~~~-~~~~~~ 406 (406) T protein:vir:97 343 LVNNQILTPNQGLVELGKQKSTDPNMDRYQSSLNYVFLDKKE-EYQD-K------VGIKGKGGEVN-AEEDKS 406 (406) T ss_pred HHhCCCcCHHHHHHHhCCCCCCCCCCCeEeeccCccchhccc-cccc-c------cccccCCCCCC-CCCCCC Confidence 99999999999999999999976 89999988876553311 1110 0 00011111111 111111 No 46 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=100.00 E-value=3.2e-85 Score=483.83 Aligned_cols=419 Identities=14% Similarity=0.108 Sum_probs=316.9 Q ss_pred hccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCccccee--ccccCCcccchhhhhhHHhhhccHHHHHH Q lcl|Aclame:pro 53 AWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMY--LPSISDPDAFFLINLFRKYRFNNDSKLIK 130 (945) Q Consensus 53 ~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~--lps~s~p~~~~~~~v~~~~Am~nsaV~aC 130 (945) -|| .-.|++|+-.. ....+. ..|.. -++++... ..+..++...++++|+||+| T Consensus 1 ~~~----------~~~~~~~~~~~--------~~~~~~------~~~~~~~g~~~~~~~-~~~~~~~~~~a~~~~~v~~~ 55 (460) T protein:vir:10 1 MAN----------RIIRALRELTG--------LDNKFN------DAFIKYIGQTFTKYD-NNGKTYLEQGYNINPDVYSC 55 (460) T ss_pred Cch----------hHHHHHhhhhc--------cCCCch------HHHHHhhccccCCCc-cchhhhhHHHHhcchHHHHH Confidence 111 11223322211 000000 11110 12233211 12345778889999999999 Q ss_pred HHHHHHhhccCceEEEEeccCcccccc----------------------cchhhcccHHHHHHhccCccCChHHHHHHHH Q lcl|Aclame:pro 131 VSEIPKKLTSKELEIYKHIEDKHVNYY----------------------LKRIRDARNILEFLERPDPYFSEVNSWEYLL 188 (945) Q Consensus 131 V~iIA~~IAsLP~~VyRrtedg~ee~~----------------------~r~~a~dhpL~~LL~rPNp~mT~~eFwetli 188 (945) |++||++||++||++|++..++..... .+.....+....|+.+|||+||+++||+. T Consensus 56 v~~ia~~iA~lp~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~-- 133 (460) T protein:vir:10 56 ISQMAAKTVAVPYTIKVVKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSL-- 133 (460) T ss_pred HHHHHHhhhhCceEEEeccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHH-- Confidence 999999999999999998887643211 11222334445677899999999999876 Q ss_pred HHHHHHHhccCCeEEEEEecC----CCeEEEEEEcCCceeEEEEcCCCceEE-----EEEEeeCCceeeeecccceeeee Q lcl|Aclame:pro 189 GMVLDDILTIDRGAIVKIRDE----QGNLVAITPVDGTTIKPILSEDTGIVV-----GYVQEVDGAIVAHFDKRDVVLFR 259 (945) Q Consensus 189 ~~Lv~dlLl~Gna~i~iird~----~G~pveL~pLdPs~Vtv~~d~dG~~~~-----~Yv~~~dG~~~~~~~a~DVIh~r 259 (945) ++.+++++|++|++++|+. .|+|.+||||+|++|++..+.+|.... .++....|+....++++||||++ T Consensus 134 --~~~~lll~Gnay~~i~r~~~~~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r 211 (460) T protein:vir:10 134 --YKTYMRLNGNCYFYLMSPDDGINAGVPSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTK 211 (460) T ss_pred --HHHHHhhcCCeEEEEEecCCCccCceeEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEe Confidence 5778899999999999964 478999999999999999988875432 12233456777899999999998 Q ss_pred eccCCCCc--cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHH Q lcl|Aclame:pro 260 QNLTPDVY--MYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQ 337 (945) Q Consensus 260 ~n~~~d~~--~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we 337 (945) .+...... .+.+|+||+..+++.+..+.++++++.++|.| |++|++|++.+ +.+++++++++++.|+ T Consensus 212 ~~~~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~n-g~~~~~i~~~~----------~~l~~e~~~~~~~~~~ 280 (460) T protein:vir:10 212 YANPNFDLQGSHLYGMSPIRAILRNINSQNSTIDNNVKTMQN-GGVFGFIHGGS----------TGLTQPQADSLKQRLT 280 (460) T ss_pred cCCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcceeeecC----------CCCCHHHHHHHHHHHH Confidence 76543222 12379999999999999999999999999965 67899998753 5689999999999999 Q ss_pred HHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCC--CcccHHHHHHHHHHHHH Q lcl|Aclame:pro 338 AIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGS--NKATAEVMASLTKAKGL 414 (945) Q Consensus 338 ~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~g--T~SN~Eqq~~~F~~~tL 414 (945) +.++| .|+|+++++++|++|+++++++.|+||++++++++++||++|||||++||..+++ +++|+|++...|++.|| T Consensus 281 ~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l 360 (460) T protein:vir:10 281 EMDKSPDRLSQIAGASGEIAFTKISLNTDELKPFDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNI 360 (460) T ss_pred HHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHH Confidence 99988 6899999999999999999999999999999999999999999999999988764 68999999999999999 Q ss_pred HHHHHHHHHHHHHhhccccc-cceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCC--CCccccccccc Q lcl|Aclame:pro 415 EPLMATISKGFDEVVSEFRN-EKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPV--PWGDVPFSGLR 491 (945) Q Consensus 415 ~Pll~~IEqeLn~kL~~~~~-~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPv--eGGD~~l~~~n 491 (945) .||+.+||+++|++|++..+ ..+++++|+...+...+++.+....++++|++|+||+|+++|+||+ +|||.++++.| T Consensus 361 ~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~~l~~l~~d~~~~~~~~~~g~~T~NE~R~~~g~~pi~~~~gD~~~~~~n 440 (460) T protein:vir:10 361 QPDLVILKQAFDKKFIKRFKGYENAVIEWDISELPEMQTDMVAMASWLNTIPVTPNEIRIAMKYETLNQDGMDIVFMPSN 440 (460) T ss_pred HHHHHHHHHHHHHhhcCcccccCCceEEeecchhhhHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCCeeeeccc Confidence 99999999999998877644 3467788887776555555566667889999999999999999999 58999999987 Q ss_pred cccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 492 NWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 492 ~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) .++..+..... .+... +.++ T Consensus 441 ~~~~~~~~~~~-~~~~~------------------nq~~ 460 (460) T protein:vir:10 441 KVRIDDVSNNL-IDSAF------------------NQNQ 460 (460) T ss_pred ccchhhccccc-CCCcc------------------cCCC Confidence 76654321100 00000 0000 No 47 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=100.00 E-value=4.9e-85 Score=482.82 Aligned_cols=501 Identities=20% Similarity=0.234 Sum_probs=338.5 Q ss_pred CchhhhHhhhheecccc-ccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecce-eeecccccc Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANE-QKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQ-VLKKEKIIV 78 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~-l~kK~K~i~ 78 (945) |--+|.+.|-|+ +.+. -+++- ++.-+++.++++.+ .+.|-+..+ T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~k~~~~~ 46 (547) T protein:vir:63 1 MGLFESIRLAGV-NKSDAVKHIE---------------------------------VDDNYSIAIQQREQEQISKAMNNK 46 (547) T ss_pred CchhhhhhhhcC-Cccccccccc---------------------------------cccccchhhhhhhHHHHHHhhccc Confidence 666666666552 2211 11222 22333333333311 111111111 Q ss_pred ccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCc-----------eEEEE Q lcl|Aclame:pro 79 PYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKE-----------LEIYK 147 (945) Q Consensus 79 p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP-----------~~VyR 147 (945) +.+- ..|.-+.. ... .....-|++..+. ....+.+.+..+++|++||++||++||++. |.+.- T Consensus 47 ~~~~-~~~~~~~~-~~~-~g~~~~~~~~~~~---~l~~l~~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~ 120 (547) T protein:vir:63 47 EVAY-SQPVIGSM-SAN-PGFKTKPSIRNNQ---DLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRL 120 (547) T ss_pred chhh-hchhhhee-ecc-cccccCCccCChh---HHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEe Confidence 1110 01100000 000 0000112221111 112223455678999999999999999742 33321 Q ss_pred eccCcccccccchhhcccHHHHHHhccCccCChH-HHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEE Q lcl|Aclame:pro 148 HIEDKHVNYYLKRIRDARNILEFLERPDPYFSEV-NSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKP 226 (945) Q Consensus 148 rtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~-eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv 226 (945) +..+ .+.........|++..+|.+||+++++. +.|.+|+++++.+++++||+|++++|+..|+|++||||+|.+|++ T Consensus 121 k~~~--~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f~~~lv~d~ll~Gn~~~~i~rd~~G~~~~L~~l~p~~V~~ 198 (547) T protein:vir:63 121 KDLD--KKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFF 198 (547) T ss_pred cccc--cccChhhHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHhhCCEEEEEEECCCCcEEEEEEecCceeEE Confidence 1111 1112233455678889999999987543 345567778899999999999999999999999999999999999 Q ss_pred EEcCCCceE---EEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 227 ILSEDTGIV---VGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSI 303 (945) Q Consensus 227 ~~d~dG~~~---~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~ 303 (945) ..+.+|... ..|++..+|+....++++||||+++++.++....+||+|||..++.++..+.++++++.++|. ||++ T Consensus 199 ~~~~~g~~~~~~~~y~~~~~~~~~~~~~~~eiih~r~n~~~~~~~~~~G~Spi~~~~~~i~~~~~a~~~~~~~f~-Ng~~ 277 (547) T protein:vir:63 199 ATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFS-HGGT 277 (547) T ss_pred EECCccccccCceEEEEEcCCcEEEEeccccEEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH-cCCC Confidence 998887542 457777888888899999999999988777777789999999999999999999999999996 5779 Q ss_pred ceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCccc-ccCCCceeeeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 PEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPI-LSGGKFTWIDFKGKRRDMQFKELAEFVARKIC 381 (945) Q Consensus 304 PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~-VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA 381 (945) |+|||.+++ +..++++++++++++|++.++| +|+|+++ ++++|++|+++++++.|+||+|++++++++|| T Consensus 278 p~giL~~~~--------~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~~~g~~~~~l~~~~~d~qfle~~~~~~~~Ia 349 (547) T protein:vir:63 278 TRGILQIKA--------AQQQSQHALEIFKREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVIS 349 (547) T ss_pred cceEEEecC--------CCCCCHHHHHHHHHHHHHHhcCcccccccccccCCCceEEEcCCChhHHHHHHHHHHHHHHHH Confidence 999998864 2458999999999999999988 6888865 45789999999999999999999999999999 Q ss_pred HHhcCChhhcccccCC----------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHH Q lcl|Aclame:pro 382 AVYQVSPQDVGILEGS----------NKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKER 451 (945) Q Consensus 382 ~aFGVPP~lLG~~e~g----------T~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~k 451 (945) ++|||||++||+.+++ |++|+|++...|+++||+||+++||++||++|++..+ .+++|+|+..++.+.. T Consensus 350 ~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~L~~~~~-~~~~~~f~~~~~~~~~ 428 (547) T protein:vir:63 350 ALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEFG-DKYTFQFVGGDIKSEL 428 (547) T ss_pred HHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CceEEEeeccccccHH Confidence 9999999999986553 7899999999999999999999999999999987654 4689999999998988 Q ss_pred HHHHHHHHHHhCCCcCHHHHHHHHhCCC-CCCccccccccccccccccchhhccC-----CCCc----cccc-ccCCCCC Q lcl|Aclame:pro 452 DWWNIIQGQLNTGFRSINEARMEKGLEP-VPWGDVPFSGLRNWKPEDEQAKAQQG-----AMPP----QLAQ-AMADQPS 520 (945) Q Consensus 452 erae~~~~~v~~GimT~NEaRe~lGlpP-veGGD~~l~~~n~~~ped~~a~~~~~-----a~~~----~~~~-~~~d~~~ 520 (945) +++++++ ++.+|+||+||+|+++|+|| +||||.++.+.+..+........... ...+ +... .+++++. T Consensus 429 ~~~~~~~-~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (547) T protein:vir:63 429 ESVKILA-EKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVED 507 (547) T ss_pred HHHHHHH-HHhCCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCCccccchhhccccccccCCCCCCCCCC Confidence 8887664 67789999999999999998 79999998776544322111110000 0000 0000 0011111 Q ss_pred C------CCCCCCCCccccchhHHHHHHHHHHHHhhhhhhhhHHHHHhhcc Q lcl|Aclame:pro 521 Q------QGGGVDENSSVPSEQKNAGLEVLRNLFKSLDANASENLKQVIEL 565 (945) Q Consensus 521 ~------~~g~~dd~e~~~se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl 565 (945) + .+..++++.......++++.++.+|..++ +++- T Consensus 508 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 547 (547) T protein:vir:63 508 IPDGKDTTGDIGKDGQRKDKDNANAGKQGMKGDKPN-----------DWQT 547 (547) T ss_pred CCCCcccCCCcCccccccCccccchhhhhcCCCCcc-----------ccCC Confidence 1 11111222222233345555555442211 0000 No 48 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=100.00 E-value=1.1e-80 Score=458.87 Aligned_cols=623 Identities=14% Similarity=0.123 Sum_probs=339.3 Q ss_pred cccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHH Q lcl|Aclame:pro 92 FEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFL 171 (945) Q Consensus 92 ~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL 171 (945) +...|....+.++|+..+ ..++..+.++++++||+||++||++||++||++|+.+ + +....||+++|| T Consensus 1 ~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~--~-------~~~~~~~l~~lL 68 (723) T protein:vir:94 1 MTTFPSGAGGWNAWSADS---VFGNGAKGWSNSAVAYRCISMLANNAASVDLVVRGPD--G-------ELDELHPLSQLW 68 (723) T ss_pred CcccccCCCccccccccc---cccccHHHHhhhHHHHHHHHHHHHhhccceeEEEcCC--C-------ccchhhHHHHHH Confidence 222222222334444221 2356678899999999999999999999999998632 1 123569999999 Q ss_pred h-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec---CCCeEEEEEEcCCceeEEEEcCCCce-----EEEEEEee Q lcl|Aclame:pro 172 E-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD---EQGNLVAITPVDGTTIKPILSEDTGI-----VVGYVQEV 242 (945) Q Consensus 172 ~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird---~~G~pveL~pLdPs~Vtv~~d~dG~~-----~~~Yv~~~ 242 (945) + +|||+||+++||+. ++.++++.||+|+++.++ ..|.|.+|+|++|..+.+....++.. .+.|.+.. T Consensus 69 ~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~~~~~~y~~~~ 144 (723) T protein:vir:94 69 NVMPNRAMPAQVLKAL----SMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQAQIIGYVIER 144 (723) T ss_pred hhCCCCCCCHHHHHHH----HHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccceeeeeeEEEEEe Confidence 7 89999999999877 466778999999999865 45899999999998887776655432 23455555 Q ss_pred CCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccch Q lcl|Aclame:pro 243 DGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYP 322 (945) Q Consensus 243 dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~ 322 (945) .++....++++||||++.+...+ +.+|+|||..++++|+.+.++++++.++|. ||++|+|||+.+ T Consensus 145 ~~G~~~~~~~~dIiHir~~~~~d---g~~G~Spi~~a~~~i~~~~aa~~~~~~~f~-NG~~p~giL~~~----------- 209 (723) T protein:vir:94 145 TDGVRVPVLADEMLWLRFSDPYD---PLAVMAPWKAARAAVDADFYAATWQRQSFK-NGARPGGVVNLG----------- 209 (723) T ss_pred cCceeEEecccceEEecCCCCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEEEcC----------- Confidence 55667789999999998654323 237999999999999999999999999996 578899999753 Q ss_pred hccHHHHHHHHHHHHHHhcC-cccCcccccC----------CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc Q lcl|Aclame:pro 323 QLSREQLESIQRQLQAIMMG-DYTQVPILSG----------GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV 391 (945) Q Consensus 323 ~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~----------~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL 391 (945) .+++++.++++++|++.++| .|+|+++|++ +|++|++++++++|+||+|++++++++||++|||||++| T Consensus 210 ~l~~e~~~~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i 289 (723) T protein:vir:94 210 DMDEQTFTKTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDAL 289 (723) T ss_pred CCCHHHHHHHHHHHHHHhhchhhcCcceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHc Confidence 37899999999999999988 6999999885 599999999999999999999999999999999999999 Q ss_pred ccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechh--hcCHHHHHHHHHHHHhCCCcCHH Q lcl|Aclame:pro 392 GILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDD--LEKERDWWNIIQGQLNTGFRSIN 469 (945) Q Consensus 392 G~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~--l~D~kerae~~~~~v~~GimT~N 469 (945) |. +++++|++++...|+++||+||+++||+++|++|++..+. .++|+|+... ..|.+++++++..++++|+||+| T Consensus 290 ~~--~st~sN~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~g~-~~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~N 366 (723) T protein:vir:94 290 LG--GSTYENQAEAKAAVWTETLIPQMEVMASITDLQLLPDIGW-TVEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMVD 366 (723) T ss_pred CC--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccC-ceEEeecchhhhhcCHHHHHHHHHHHHhCCCcCHH Confidence 64 5789999999999999999999999999999999876543 4778888654 47999999999999999999999 Q ss_pred HHHHHHhCCCCCCcccc--ccccc-cccccccchhh-ccCC-C--C--cccc----cccCCCCCCCCCCCCCCccccchh Q lcl|Aclame:pro 470 EARMEKGLEPVPWGDVP--FSGLR-NWKPEDEQAKA-QQGA-M--P--PQLA----QAMADQPSQQGGGVDENSSVPSEQ 536 (945) Q Consensus 470 EaRe~lGlpPveGGD~~--l~~~n-~~~ped~~a~~-~~~a-~--~--~~~~----~~~~d~~~~~~g~~dd~e~~~se~ 536 (945) |+|+++|+||+||||.. +.+.+ +..+.+....+ +.++ . + .... .++....+.+.-+.+++ +.++.+ T Consensus 367 E~R~~lglpPi~gGd~~~~~~p~~~~~a~~~~~~p~~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~ 445 (723) T protein:vir:94 367 EVRATIGLDPLPGGIGQMTLTPYRAQFAPAPAPAPAVEEGAARMLALLERVAADRPLPELPVRATTVLHHDPG-PDPQQT 445 (723) T ss_pred HHHHHhCCCCCCCCcccceeccccccccCCCCCCccchhhhHhhhhhccccccccCcCCCCCCCCCCCCCCcc-cCCchh Confidence 99999999999999843 23221 11111111110 0000 0 0 0000 00000000000011111 111111 Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhhccCCccccccchHHHHHHHHhhhhHHHHHhhhhhhhcccccCCCcccccchhh Q lcl|Aclame:pro 537 KNAGLEVLRNLFKSLDANASENLKQVIELTNDDNYLKEKELLTRVLKSVGLDSVSEFIENNSQTDVEVSAKDILSFKYNS 616 (945) Q Consensus 537 k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (945) .. +-+..++..+-++++...+.. +....+.+.+..+.+.- T Consensus 446 ~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------------------ 485 (723) T protein:vir:94 446 LY---ERLEALLQPLLVELGRRQAAV-TLREFDLLMRGERAAAL------------------------------------ 485 (723) T ss_pred HH---HHHHHHHhhhHHHHHHHHHHH-HHHhhchhhcchHHHHH------------------------------------ Confidence 11 111222222222222221111 11111111111111000 Q ss_pred HHHHHHhhccchhhhhhhhcccccchhhhhhhhhhccccccccceeeecCccceeEEeccccccchhhHHHHHHHHHHhh Q lcl|Aclame:pro 617 LVEDETIYATEKDIVLRLLGKNSLDHRETFGLIATHFDCHTVPKVEFYSDKDKRYVFANLSVCSPINSVEKFTRLDELLS 696 (945) Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (945) .+.+.+.-++|+-..-.|+++-- .|+| ....-+|++-.. T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~v----------------------~~~~~~~~~~~~- 524 (723) T protein:vir:94 486 WLADVRAVASEAYERGALLAPPD------------------AEEV----------------------PPARLTRLDLAP- 524 (723) T ss_pred HHHHHHHHHHhccccceeccccc------------------cchh----------------------hHHHHHHHHHhh- Confidence 00111111111100001111000 0000 012223322111 Q ss_pred cccCCCceeeeeeehhhccCcccchhhhhhhhhhhhhhcCCcchhhHHHHHHHhhcchHHHHHHHHHHHHhhhhchhHHH Q lcl|Aclame:pro 697 CTTKKPTKLEIVFDWLEFKNFKDIDLLKYSQLGDSIKKKNYDSFDYLDDVEKLLVAPYEELENLVNLLKKKFFVEGELFS 776 (945) Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (945) ..+.+.+.+..+.+. -.+. .+.++.|.. T Consensus 525 ------~~~~~~~~~~~~~~~----------------------~~~~--------------~~~~~~l~~---------- 552 (723) T protein:vir:94 525 ------EELAVRINVKRIFNA----------------------RKWV--------------ARTKDTLRG---------- 552 (723) T ss_pred ------HHHHHHHHHHHHHHH----------------------HHHH--------------HHHHHHHHH---------- Confidence 000111111111110 0000 011111111 Q ss_pred HHhhhccchhHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhcccccccchhhHhHHHHhhchHHHHHHHHHHHHHHh-h Q lcl|Aclame:pro 777 LVDSYKATPHSLFLLFSLIEELGVEKINSLVASCKGVLEMLLGVQVENFETNHMVHWLLSFSYDKIREVIASLSYFIE-T 855 (945) Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 855 (945) ++++.= ..+-.-| .-.++..++ +.. -.+-|+ ++-+.++.--+. + T Consensus 553 -----------------~~~~~~-~~~~~~v-------~~~l~~~~~-~~~-~~~~~i--------~~~~~~~~~~~~~~ 597 (723) T protein:vir:94 553 -----------------WYETAW-RTGGDHV-------AAQLGDGFD-MDE-QVLDEL--------DKRLDVLAGQINAT 597 (723) T ss_pred -----------------HHHHHH-HHHHHHH-------HHHhccchh-ccH-HHHHHH--------HHHHHHHHHHHHHH Confidence 000000 0000001 112232221 000 111121 111111110000 0 Q ss_pred hhcccchhhhhhhhhHHHHHHhhccCCcceEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHH Q lcl|Aclame:pro 856 ISIDCEFEKIRLLGTIGSLISSFGQNKNINFVFVAENFDDYMNLVESISEEVDNIFMKSFVFKSLLGEQLERQEARDYVK 935 (945) Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (945) + -++|+- .+|. +-+--.++.+ .|..++...|.. +..---+.+-|.|.....- T Consensus 598 ~-----~~~l~~-----~~i~--------~g~~~G~~~~-------~ia~~i~~~~~~---~~~~rA~~IarTE~~~a~~ 649 (723) T protein:vir:94 598 T-----EAALRA-----QLLH--------HGVQQGESVD-------ELRARLQKVFTD---LTDWRAQMIARTETVGAFN 649 (723) T ss_pred H-----HHHHHH-----HHHH--------HHHHcCCCHH-------HHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHH Confidence 0 001100 0000 0000011111 222222222210 0000112233333222111 Q ss_pred HHHHhhhcCC Q lcl|Aclame:pro 936 EFIKKKYGEL 945 (945) Q Consensus 936 ~~~~~~~~~~ 945 (945) .--...|.+. T Consensus 650 ~a~~~~~~~~ 659 (723) T protein:vir:94 650 AAGLIAAERS 659 (723) T ss_pred HHHHHHHHhc Confidence 1111223222 No 49 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=100.00 E-value=1.3e-83 Score=475.08 Aligned_cols=427 Identities=15% Similarity=0.129 Sum_probs=314.2 Q ss_pred hhccceeeeeeeeeecceeee----cccccccc-ccccCCCC-----CcccccCcc--cce--eccccCCcccchhhhhh Q lcl|Aclame:pro 52 LAWNSTVVYSIIIFRKNQVLK----KEKIIVPY-NHQEPPFK-----FNLFEYSPE--SLM--YLPSISDPDAFFLINLF 117 (945) Q Consensus 52 ~~~~~~~~~~~~~~k~n~l~k----K~K~i~p~-~~r~pp~~-----f~L~~~s~~--sl~--~lps~s~p~~~~~~~v~ 117 (945) ..| + .||++ .+|...+. .....+.. +......|. .+. .-++|+ +. .+..++ T Consensus 1 M~~--------~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~--~g~~v~ 65 (466) T protein:vir:81 1 MRL--------I----DRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELA-PD--TFVGLA 65 (466) T ss_pred Cch--------h----HHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhcccccccc-Cc--cccccc Confidence 111 1 12222 12211111 10000000 000000111 000 011122 11 244678 Q ss_pred HHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 118 RKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILT 197 (945) Q Consensus 118 ~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl 197 (945) .+.|+++++|++||++||++||++||++|+....+ +.+..+|+++.|+.+||++||+++||+. ++.++++ T Consensus 66 ~~~a~~~~~v~~~i~~Ia~~ia~lp~~~~~~~~~~------~~~~~~~~~~~L~~~PN~~~t~~~f~~~----l~~~lll 135 (466) T protein:vir:81 66 TQAYQANGPVFACMLVRQLVFSSVRFRWQRLRDGK------PSDTFGSRDLQILETPWKGGTTQDMLSR----MIQDADL 135 (466) T ss_pred hhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc------eeeccccHHHHHhhCCCCCCCHHHHHHH----HHHHHHh Confidence 89999999999999999999999999999865433 3456789999999999999999998876 5677789 Q ss_pred cCCeEEEEEecCC--------CeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCc----eeeeecccceeeeeeccCCC Q lcl|Aclame:pro 198 IDRGAIVKIRDEQ--------GNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGA----IVAHFDKRDVVLFRQNLTPD 265 (945) Q Consensus 198 ~Gna~i~iird~~--------G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~----~~~~~~a~DVIh~r~n~~~d 265 (945) +||+|+++.|+.. |.+++|+|++|++|++..+.++...+.|.+..++. ....++++||||++.+.++. T Consensus 136 ~Gnay~~i~r~~~g~l~~~~~g~~~~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~ 215 (466) T protein:vir:81 136 AGNSYWTIVDGEFVRMRPDWVDVVVEERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPL 215 (466) T ss_pred cCCeEEEEEecCccccccccCcceeEEEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCCcc Confidence 9999999999765 55899999999999999999987777776665543 45679999999998765544 Q ss_pred CccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cc Q lcl|Aclame:pro 266 VYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DY 344 (945) Q Consensus 266 ~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~N 344 (945) .. .+|+||+..++++|+.+.++++++.++|. ||++|+|||+.+ +.+++++++++++.|++.++| +| T Consensus 216 d~--~~G~s~i~~~~~~i~~~~a~~~~~~~~f~-ng~~p~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~~n 282 (466) T protein:vir:81 216 AS--YRGMSWLTPILREIRADQAMSKHQAKFFD-NGATVNLVIKHN----------PMADPAAVKKWADEVNSKHAGVDN 282 (466) T ss_pred cc--cccccHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEEecC----------CCCCHHHHHHHHHHHHHHhcCccc Confidence 32 37999999999999999999999999996 577899999874 468999999999999999988 68 Q ss_pred cCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhccccc---CCCcccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 345 TQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILE---GSNKATAEVMASLTKAKGLEPLMATI 421 (945) Q Consensus 345 agkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e---~gT~SN~Eqq~~~F~~~tL~Pll~~I 421 (945) +|+++++++|++|++++++++|+||+|++++++++||++|||||++||+.+ .+|++|+|++.+.|+++||.||+++| T Consensus 283 ~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~i 362 (466) T protein:vir:81 283 AWKNLNLYPGADADVVGSNLQEIDFKNVRGGGETRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNL 362 (466) T ss_pred cccceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHH Confidence 999999999999999999999999999999999999999999999999764 47899999999999999999999999 Q ss_pred HHHHHHhhccccccceeEEEeechhh--cCHHHHHHH-------HHHHHhCCCcCHHHHHHHHhCCCCCCcccccccccc Q lcl|Aclame:pro 422 SKGFDEVVSEFRNEKDIKLWFKEDDL--EKERDWWNI-------IQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRN 492 (945) Q Consensus 422 EqeLn~kL~~~~~~~g~~f~fd~~~l--~D~kerae~-------~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~ 492 (945) |++|+++|++......++|+|+...+ .|.++|+++ +..++++|+ |+||+|. +++|||.++.+... T Consensus 363 e~~l~~~L~~~~~~~~~~~~f~~~~llr~d~~~r~~~~~~~~~~~~~~~~~g~-t~nE~r~-----~~~~gd~~~~~~~~ 436 (466) T protein:vir:81 363 SGCIGHVMPDMGPDVRLWYDADDVPFLREDEKDAADIQKVRAETINTLITAGY-EPESVVA-----AVNSGDLRLLKHTG 436 (466) T ss_pred HHHHHhhcCCcccCcceEEEecchhhhccCHHHHHHHHHHHHHHHHHHHHcCC-Chhhccc-----cccCCccccccCCC Confidence 99999999876655567778776654 588887765 667888985 9999994 56788877655444 Q ss_pred ccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 493 WKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 493 ~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) ..+.+.. .+.+......+.+. .+|+++.++ T Consensus 437 ~~~~~~~-------~~~~~~~~~~~~~~-~~Gg~~ngn 466 (466) T protein:vir:81 437 LTSVQLL-------PPGVSASASSDTPT-SGGADDNGN 466 (466) T ss_pred cchhhhc-------ccccccccCCCCcc-cCCCCcCCC Confidence 3333211 11111111112211 222222222 No 50 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=100.00 E-value=3.2e-83 Score=472.83 Aligned_cols=397 Identities=16% Similarity=0.095 Sum_probs=297.6 Q ss_pred ccccccchhchhhhhcccCCCCcchhhhhhhhhccceeee-----eeeeeecceeeeccccccccccccCCCCCcccccC Q lcl|Aclame:pro 21 PSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVY-----SIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYS 95 (945) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s 95 (945) -.|-||+.. +..-|+++|- |+.|-| .++.| ++|. .+.+.|..+ ... T Consensus 1 ~~~~~~~~~-------~~~~~~~~~~--------~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~------~~~ 51 (409) T protein:vir:83 1 MGFWSNLFG-------IPSIPDLPND--------NGPVDYNPGDPDMVEF------RGPE--EEPEARALP------WIR 51 (409) T ss_pred Cchhhhhcc-------cccCCCcccc--------cccccccCCCCceeec------cCCC--cchhhhhcc------ccc Confidence 344444331 1223333331 111111 01111 1121 111111111 112 Q ss_pred cccceecc-ccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-c Q lcl|Aclame:pro 96 PESLMYLP-SISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-R 173 (945) Q Consensus 96 ~~sl~~lp-s~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-r 173 (945) +..|.+.| .|.. + .+..++.+.++++++||+||++||++||++|+++|+..+. .+.+..+|+ + T Consensus 52 ~~~~~g~~~~~~~-~--~~~~~t~~~~~~~~~v~acV~~Ia~~iA~lpl~~~~~~~~------------~~~~~~ll~~~ 116 (409) T protein:vir:83 52 PTAWSGYPESWAT-P--SWGSAQDKLRTLIDVAWACIDLNASVLSSMPIYRMRNGRI------------IDSVAWMSNPD 116 (409) T ss_pred ccccccccccccc-c--CccccchhhHhhhHHHHHHHHHHHHhhccCceEEeeCCcc------------ccchhhhcccC Confidence 22333222 1221 1 2456788999999999999999999999999999974321 122334565 9 Q ss_pred cCccCChHHHHHHHHHHHHHHHhccCCeEEE-EEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecc Q lcl|Aclame:pro 174 PDPYFSEVNSWEYLLGMVLDDILTIDRGAIV-KIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDK 252 (945) Q Consensus 174 PNp~mT~~eFwetli~~Lv~dlLl~Gna~i~-iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a 252 (945) ||++||+++||+.+ +.++++ ||+|++ +.++.+|+|++|+||+|+.|++..+.+|...|++ .+ ...+ T Consensus 117 PN~~~t~~~f~~~l----~~~lll-Gnay~~~i~r~~~G~~~~L~pl~p~~v~v~~~~~g~~~y~~----~~----~~~~ 183 (409) T protein:vir:83 117 PEVYTSWQEFAKQL----FWDFQL-GEAFVLPMAHGSDGYPIRFRVVPPWLVNVELKKGARREYRI----GG----LNVT 183 (409) T ss_pred CCCCCCHHHHHHHH----HHHHhh-CCcEEEEEEECCCCcEEEEEEECCcceEEEEcCCceEEEEE----cc----ccCc Confidence 99999999998764 556566 777765 5689999999999999999999998887654332 12 2345 Q ss_pred cceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHH Q lcl|Aclame:pro 253 RDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESI 332 (945) Q Consensus 253 ~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erl 332 (945) +||||++.+...+. .+|+||++.++++++.+.++++++.++|. ||++|+|||+++ +.+++++++++ T Consensus 184 ~eiiHir~~~~~~~---~~G~spi~~~~~~i~~~~a~~~~~~~~f~-nga~p~gil~~~----------~~ls~e~~~~~ 249 (409) T protein:vir:83 184 DEILHIRYQGNTAD---AHGHGPLESAAPRQVVIGLLQKYVQNLAE-TGGVPLYWLGVE----------RRLSETEAVDL 249 (409) T ss_pred cceEEeCCCCCCCC---cccccHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEeecC----------CCCCHHHHHHH Confidence 89999987654442 47999999999999999999999999996 578999999874 46899999999 Q ss_pred HHHHHHHhcCcccCcccccCCCcee-eeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccC---CCcccHHHHHHH Q lcl|Aclame:pro 333 QRQLQAIMMGDYTQVPILSGGKFTW-IDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEG---SNKATAEVMASL 408 (945) Q Consensus 333 Ke~we~~~sG~Nagkp~VL~~G~k~-~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~---gT~SN~Eqq~~~ 408 (945) +++|++.++| |+|+++++.+|+++ ++++++++|+||+|++++++++||++|||||++||+.++ .||+|+|++..+ T Consensus 250 ~~~~~~~~~~-nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~llg~~~~~~~~tysn~eq~~~~ 328 (409) T protein:vir:83 250 MDRWIESRSK-YAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPPFLVGLPGATGSLTYSNIEQLFSF 328 (409) T ss_pred HHHHHHhhCC-ccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHHccCCCCccccccccHHHHHHH Confidence 9999998875 78899999999997 579999999999999999999999999999999997544 478999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccccc Q lcl|Aclame:pro 409 TKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFS 488 (945) Q Consensus 409 F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~ 488 (945) |+++||+||+++||+++|++|++.. ..++|+++.....|.++|++++++++++|+||+||+|+++||||++|||.... T Consensus 329 f~~~tL~P~~~~ie~~l~~~Ll~~~--~~~~f~~~~llr~d~~~r~~~~~~~~~~G~lT~NE~R~~~glpp~~ggd~l~~ 406 (409) T protein:vir:83 329 HDRSSLRPKATAVMAALDRWALPSP--QHLELNRDDYTRPSLVERATAYKIMIEAGVMEPNEARAMERLHSEAAAVRLSG 406 (409) T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCC--cEEEeehhhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccCC Confidence 9999999999999999999987642 24555555666679999999999999999999999999999999999997632 Q ss_pred ccccc Q lcl|Aclame:pro 489 GLRNW 493 (945) Q Consensus 489 ~~n~~ 493 (945) +.+ T Consensus 407 --~gv 409 (409) T protein:vir:83 407 --GGV 409 (409) T ss_pred --CCC Confidence 122 No 51 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=100.00 E-value=8e-83 Score=470.66 Aligned_cols=537 Identities=20% Similarity=0.211 Sum_probs=329.6 Q ss_pred ccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceec Q lcl|Aclame:pro 23 FSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYL 102 (945) Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~l 102 (945) .-..+.+-.+.+.-|.+|--..-.+-+ +---+. -++. |=.++..++|.--.++.+- ..|+-+.+. +. ...... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~~~~~~a~-~~p~~~~~~-~~-~~~~~~ 73 (576) T protein:vir:96 1 MVTRLADIFKRLRLGRDYEDIIDTVPI-DDGLQA--NIRN-IEEKSKELNKSLYGKQQAY-AEPFLEVMD-TN-PEFRTK 73 (576) T ss_pred ChhhHHHHHHHHhccCccccchhhhhc-ccChhH--HHHH-hhhhhhhhccccCCccchh-hcceeeeee-cC-CCcccc Confidence 111111111222222222211111111 000000 0000 0012222222211111110 111111110 00 001111 Q ss_pred cccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhcc-----------CceEEEEeccCcccccccchhhcccHHHHHH Q lcl|Aclame:pro 103 PSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTS-----------KELEIYKHIEDKHVNYYLKRIRDARNILEFL 171 (945) Q Consensus 103 ps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAs-----------LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL 171 (945) |+..... ..+..++ +....+++|++||++||++||+ ++|.+..+..+.. ...+...+.|++..+| T Consensus 74 p~~~~~~-~~~~~~l-~~~~~npiv~~~I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~~--~~~~~~~~~~~l~~~l 149 (576) T protein:vir:96 74 RSYMKNS-DNLHDVL-KQFGNNPILNAIILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDAE--PGKKEKEEIKRIENFI 149 (576) T ss_pred Ccchhhh-hhhHHHH-HHhhcCHHHHHHHHHHHHHHHhhhhhhhhccccccceeEEecCcCc--cchhhhHhhhhHHhhH Confidence 1111000 0111222 3334689999999999999997 3444444433322 2234445566665554 Q ss_pred ----hccCccC-ChHHHHHHHHHHHHHHHhccCCeEEEEEec--CCCeEEEEEEcCCceeEEEEcCCCceEE---EEEEe Q lcl|Aclame:pro 172 ----ERPDPYF-SEVNSWEYLLGMVLDDILTIDRGAIVKIRD--EQGNLVAITPVDGTTIKPILSEDTGIVV---GYVQE 241 (945) Q Consensus 172 ----~rPNp~m-T~~eFwetli~~Lv~dlLl~Gna~i~iird--~~G~pveL~pLdPs~Vtv~~d~dG~~~~---~Yv~~ 241 (945) ..|||++ |+.+||+ +++.+++++|++|++++++ ..|++++|+||+|.+|++..+.+|..++ .|++. T Consensus 150 ~~~~~~~~p~~~t~~~f~~----~lv~dlll~Gna~~~i~~~rd~~g~~~~L~pl~p~~V~v~~~~dg~~~~~~~~~~~~ 225 (576) T protein:vir:96 150 LNTGRDKDIDRDSFQSFCR----KIVRDTYTYDQVNFEKVFNKKNATTMDKFIAVDPSTIFYATDKNGKIIKGGKRFVQV 225 (576) T ss_pred hhccCCCCCccccHHHHHH----HHHHHHHhcCCeEEEEEEecCCCCceEEEEEeCCceeEEEECCCCceeeeeeEEEEe Confidence 3566664 6677655 4678889999999998754 4688999999999999999999987643 46677 Q ss_pred eCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccc Q lcl|Aclame:pro 242 VDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIY 321 (945) Q Consensus 242 ~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~ 321 (945) .+|+....++++|+|||++++.++...++||+|||.+++++|..+.++++++.++|. ||++|+|||+.++ + T Consensus 226 ~~~~~~~~~~~~dii~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~-Ng~~p~giL~~~~--------~ 296 (576) T protein:vir:96 226 INKKVVASFTSREMAMGIRNPRTELSSSGYGLSEVEIAMKQFIAYNNTETFNDRFFS-HGGTTRGILQIKS--------E 296 (576) T ss_pred cCCceEEEecccceEEEeecCCCCcccCcccccHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCceEEEeCC--------C Confidence 778888899999999999998888777789999999999999999999999999996 5779999999864 2 Q ss_pred hhccHHHHHHHHHHHHHHhcC-cccCc-ccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCC-- Q lcl|Aclame:pro 322 PQLSREQLESIQRQLQAIMMG-DYTQV-PILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGS-- 397 (945) Q Consensus 322 ~~LS~Eq~erlKe~we~~~sG-~Nagk-p~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~g-- 397 (945) ..+++++++++++.|++.++| +|+|+ |+|+++|++|+++++++.|+||+|++++++++||++|||||++||+.+.+ T Consensus 297 ~~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl~~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~ 376 (576) T protein:vir:96 297 QQQSQRALENFKREWKSSFSGINGSWQVPVVMADDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDPAEIGFPNRGGA 376 (576) T ss_pred CCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCHHHccccccccc Confidence 468999999999999999998 67777 68999999999999999999999999999999999999999999987654 Q ss_pred ---------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHH--HhCCCc Q lcl|Aclame:pro 398 ---------NKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQ--LNTGFR 466 (945) Q Consensus 398 ---------T~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~--v~~Gim 466 (945) |++|+|++.+.|+++||+||+++||++||++|++..+ ..++|+|+ ..|.+++++.++.+ +.+|+| T Consensus 377 ~g~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~-~~~~~~f~---r~d~~~~~e~~~~~~~~~~G~l 452 (576) T protein:vir:96 377 TGGKGGNTLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISEYS-DKYVFQFV---GGDTKSELDKIKILQEEVKTYK 452 (576) T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc-CceEEEec---cCCHHHHHHHHHHHHHHhcCcc Confidence 7899999999999999999999999999999887654 34667765 44666666665543 567999 Q ss_pred CHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCC--CCCCCCCCccccchhHHHHHHHH Q lcl|Aclame:pro 467 SINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQ--QGGGVDENSSVPSEQKNAGLEVL 544 (945) Q Consensus 467 T~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~--~~g~~dd~e~~~se~k~a~~~~l 544 (945) |+||+|+++|+||+||||.++.+.+..+........+.. .+.++...++..+ .++..+.++..+.+.+.++. T Consensus 453 T~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~--- 526 (576) T protein:vir:96 453 TVNEARKEKGLKPIEGGDVLLDGSFIQSMSLNTQKEQYE---DTKQKERFDMIQQFLNSPDDEEPQQESTEDKVDGR--- 526 (576) T ss_pred CHHHHHHHhCCCCCCCcceeccccccccccccccCCCCC---CccccccccccccccCCCCCCCCCCCCCCCccccc--- Confidence 999999999999999999998876654432211111111 1111111111100 01111111111111111111 Q ss_pred HHHHhhhhhhhhHHHHHhhccCCccccccch-HHHHHHHHhhhhHHHHHhhhhh Q lcl|Aclame:pro 545 RNLFKSLDANASENLKQVIELTNDDNYLKEK-ELLTRVLKSVGLDSVSEFIENN 597 (945) Q Consensus 545 r~~~k~l~a~~~~~~~~~~dl~n~~~~l~e~-~~~~~~~~~~~~~~~~~~~~~~ 597 (945) .+.-..+....+.+.+++++.++...-+ -.--+.++--|.+--+.|-. + T Consensus 527 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 576 (576) T protein:vir:96 527 ---ESNDPTKIDSPVGTDGQLKDQDNVKSQEGSNKGQGTKGKGNEKPSDFKN-N 576 (576) T ss_pred ---ccccCCCCCCccccccccCCCCcccccccccccccccccCCCCcccccC-C Confidence 1111122222255666666666544311 00001122212222121111 1 No 52 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=100.00 E-value=5.4e-82 Score=466.14 Aligned_cols=510 Identities=18% Similarity=0.244 Sum_probs=334.7 Q ss_pred chhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeee---ecce---eeeccc--cccccccccCCCCCcccccCccc Q lcl|Aclame:pro 27 IKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIF---RKNQ---VLKKEK--IIVPYNHQEPPFKFNLFEYSPES 98 (945) Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~n~---l~kK~K--~i~p~~~r~pp~~f~L~~~s~~s 98 (945) +..-..++.-|+||-.=|-.-+-.- +- -|+..|. +.|+ .+.|-+ +-.+..+ | |.-...+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~--~~~~~~~~~~ 70 (563) T protein:vir:99 1 MADLFKQFRLGKDYGNNSTIAQVPI---DE--GLQANIKKIEQDNKEYQDLTKSLYGQQQAYAE---P--FIEMMDTNPE 70 (563) T ss_pred Chhhhhhhhcccccccccccceeec---cC--ChhhhHhhhhccchhHHHHHhhhccCCCcchh---h--hHhhhccccc Confidence 2223345566777754332111100 00 0112222 2222 333321 1111111 1 1111111122 Q ss_pred ceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhcc-------------CceEEEEeccCcccccccchhhccc Q lcl|Aclame:pro 99 LMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTS-------------KELEIYKHIEDKHVNYYLKRIRDAR 165 (945) Q Consensus 99 l~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAs-------------LP~~VyRrtedg~ee~~~r~~a~dh 165 (945) ...-|+...|. ...-.+++.. ..+++|.+||+.++++||. +|+++++++..+ +.++..+.| T Consensus 71 ~~~~~~~~~~~-~~l~~~l~~~-~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~----~~~~~~~~~ 144 (563) T protein:vir:99 71 FRDKRSYMKNE-HNLHDVLKKF-GNNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEP----GRKEKEEMK 144 (563) T ss_pred ccccccCCCCc-ccHHHHHHHh-hcchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCc----chhhhhhhH Confidence 22223322221 1112233333 3578888888888888884 677777665544 234566778 Q ss_pred HHHHHHhc----cCcc-CChHHHHHHHHHHHHHHHhccCCeEEEEE--ecCCCeEEEEEEcCCceeEEEEcCCCceEE-- Q lcl|Aclame:pro 166 NILEFLER----PDPY-FSEVNSWEYLLGMVLDDILTIDRGAIVKI--RDEQGNLVAITPVDGTTIKPILSEDTGIVV-- 236 (945) Q Consensus 166 pL~~LL~r----PNp~-mT~~eFwetli~~Lv~dlLl~Gna~i~ii--rd~~G~pveL~pLdPs~Vtv~~d~dG~~~~-- 236 (945) ++..+|.. |||+ +|+.+ |+++++.+++++|+++++++ |+..|+|++||||+|++|++..+.+|..+. T Consensus 145 ~l~~~l~~~~~~~~p~~~t~~~----f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~~~ 220 (563) T protein:vir:99 145 RIEDFIVNTGKDKDVDRDSFQT----FCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGKIIKGG 220 (563) T ss_pred HHHHHhhhcCCCCCCCcchHHH----HHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCCceeccc Confidence 88887753 3333 34445 45567889999999998765 778899999999999999999999886542 Q ss_pred -EEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccc Q lcl|Aclame:pro 237 -GYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSY 315 (945) Q Consensus 237 -~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~ 315 (945) .|++..+|+....++++|+|||++++.++...++||+|||.+++.+|..+.++++++.++|. ||++|+|||+++++ T Consensus 221 ~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~-ng~~p~giL~~~~~-- 297 (563) T protein:vir:99 221 KRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTESFNDRFFS-HGGTTRGILQIRSD-- 297 (563) T ss_pred eeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCceEEEeCCC-- Confidence 57778888888899999999999998888777789999999999999999999999999996 56789999998642 Q ss_pred cccccchhccHHHHHHHHHHHHHHhcC-cccCcc-cccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhccc Q lcl|Aclame:pro 316 KEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVP-ILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGI 393 (945) Q Consensus 316 ~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp-~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~ 393 (945) ..+++++++++++.|++.++| +|+|++ +|+++|++|+++++++.|+||++++++++++||++|||||++||+ T Consensus 298 ------~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~ 371 (563) T protein:vir:99 298 ------QQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIGF 371 (563) T ss_pred ------CCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHccc Confidence 458999999999999999998 678874 899999999999999999999999999999999999999999998 Q ss_pred ccCC-----------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHH--HH Q lcl|Aclame:pro 394 LEGS-----------NKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQ--GQ 460 (945) Q Consensus 394 ~e~g-----------T~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~--~~ 460 (945) .+++ +++|+|++.+.|+++||+||+++||++||++|++..+ ..++++|. ..|.+++++.++ .+ T Consensus 372 ~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~-~~~~~~f~---r~D~~~~~e~~~~~~~ 447 (563) T protein:vir:99 372 PNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYG-DKYTFQFV---GGDTKSATDKLNILKL 447 (563) T ss_pred cccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc-cccEEEec---cCCHHHHHHHHHHHHH Confidence 7765 4578999999999999999999999999999887654 34667664 446667776554 36 Q ss_pred HhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccC-----CCCccccccc--CCCCCCCCCCCCCCcccc Q lcl|Aclame:pro 461 LNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQG-----AMPPQLAQAM--ADQPSQQGGGVDENSSVP 533 (945) Q Consensus 461 v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~-----a~~~~~~~~~--~d~~~~~~g~~dd~e~~~ 533 (945) +++|+||+||+|+++|+||+||||.++.+.+..+..........+ .......+.. .....++.+.++.+++.. T Consensus 448 ~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (563) T protein:vir:99 448 ETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDK 527 (563) T ss_pred hcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCcc Confidence 889999999999999999999999998876544332111111100 0000000000 011111111122222223 Q ss_pred chhHHHHHHHHHHHHhhhhhhhhHHHHHhhccCCcccccc Q lcl|Aclame:pro 534 SEQKNAGLEVLRNLFKSLDANASENLKQVIELTNDDNYLK 573 (945) Q Consensus 534 se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~ 573 (945) +.++++..+..........+...+ .....+-+.+.+ T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 563 (563) T protein:vir:99 528 EIGTDAQIKGDDNVYRTQTSNKGQ----GRKGEKSSDFKH 563 (563) T ss_pred ccccccccccccccccccCccccc----cccCcCcccccC Confidence 333333332222222222222222 222222333333 No 53 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=100.00 E-value=5.4e-82 Score=466.14 Aligned_cols=510 Identities=18% Similarity=0.244 Sum_probs=334.7 Q ss_pred chhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeee---ecce---eeeccc--cccccccccCCCCCcccccCccc Q lcl|Aclame:pro 27 IKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIF---RKNQ---VLKKEK--IIVPYNHQEPPFKFNLFEYSPES 98 (945) Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~n~---l~kK~K--~i~p~~~r~pp~~f~L~~~s~~s 98 (945) +..-..++.-|+||-.=|-.-+-.- +- -|+..|. +.|+ .+.|-+ +-.+..+ | |.-...+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~--~~~~~~~~~~ 70 (563) T protein:vir:95 1 MADLFKQFRLGKDYGNNSTIAQVPI---DE--GLQANIKKIEQDNKEYQDLTKSLYGQQQAYAE---P--FIEMMDTNPE 70 (563) T ss_pred Chhhhhhhhcccccccccccceeec---cC--ChhhhHhhhhccchhHHHHHhhhccCCCcchh---h--hHhhhccccc Confidence 2223345566777754332111100 00 0112222 2222 333321 1111111 1 1111111122 Q ss_pred ceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhcc-------------CceEEEEeccCcccccccchhhccc Q lcl|Aclame:pro 99 LMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTS-------------KELEIYKHIEDKHVNYYLKRIRDAR 165 (945) Q Consensus 99 l~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAs-------------LP~~VyRrtedg~ee~~~r~~a~dh 165 (945) ...-|+...|. ...-.+++.. ..+++|.+||+.++++||. +|+++++++..+ +.++..+.| T Consensus 71 ~~~~~~~~~~~-~~l~~~l~~~-~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~----~~~~~~~~~ 144 (563) T protein:vir:95 71 FRDKRSYMKNE-HNLHDVLKKF-GNNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEP----GRKEKEEMK 144 (563) T ss_pred ccccccCCCCc-ccHHHHHHHh-hcchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCc----chhhhhhhH Confidence 22223322221 1112233333 3578888888888888884 677777665544 234566778 Q ss_pred HHHHHHhc----cCcc-CChHHHHHHHHHHHHHHHhccCCeEEEEE--ecCCCeEEEEEEcCCceeEEEEcCCCceEE-- Q lcl|Aclame:pro 166 NILEFLER----PDPY-FSEVNSWEYLLGMVLDDILTIDRGAIVKI--RDEQGNLVAITPVDGTTIKPILSEDTGIVV-- 236 (945) Q Consensus 166 pL~~LL~r----PNp~-mT~~eFwetli~~Lv~dlLl~Gna~i~ii--rd~~G~pveL~pLdPs~Vtv~~d~dG~~~~-- 236 (945) ++..+|.. |||+ +|+.+ |+++++.+++++|+++++++ |+..|+|++||||+|++|++..+.+|..+. T Consensus 145 ~l~~~l~~~~~~~~p~~~t~~~----f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~~~ 220 (563) T protein:vir:95 145 RIEDFIVNTGKDKDVDRDSFQT----FCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGKIIKGG 220 (563) T ss_pred HHHHHhhhcCCCCCCCcchHHH----HHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCCceeccc Confidence 88887753 3333 34445 45567889999999998765 778899999999999999999999886542 Q ss_pred -EEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccc Q lcl|Aclame:pro 237 -GYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSY 315 (945) Q Consensus 237 -~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~ 315 (945) .|++..+|+....++++|+|||++++.++...++||+|||.+++.+|..+.++++++.++|. ||++|+|||+++++ T Consensus 221 ~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~-ng~~p~giL~~~~~-- 297 (563) T protein:vir:95 221 KRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTESFNDRFFS-HGGTTRGILQIRSD-- 297 (563) T ss_pred eeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCceEEEeCCC-- Confidence 57778888888899999999999998888777789999999999999999999999999996 56789999998642 Q ss_pred cccccchhccHHHHHHHHHHHHHHhcC-cccCcc-cccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhccc Q lcl|Aclame:pro 316 KEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVP-ILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGI 393 (945) Q Consensus 316 ~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp-~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~ 393 (945) ..+++++++++++.|++.++| +|+|++ +|+++|++|+++++++.|+||++++++++++||++|||||++||+ T Consensus 298 ------~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~ 371 (563) T protein:vir:95 298 ------QQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIGF 371 (563) T ss_pred ------CCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHccc Confidence 458999999999999999998 678874 899999999999999999999999999999999999999999998 Q ss_pred ccCC-----------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHH--HH Q lcl|Aclame:pro 394 LEGS-----------NKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQ--GQ 460 (945) Q Consensus 394 ~e~g-----------T~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~--~~ 460 (945) .+++ +++|+|++.+.|+++||+||+++||++||++|++..+ ..++++|. ..|.+++++.++ .+ T Consensus 372 ~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~-~~~~~~f~---r~D~~~~~e~~~~~~~ 447 (563) T protein:vir:95 372 PNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYG-DKYTFQFV---GGDTKSATDKLNILKL 447 (563) T ss_pred cccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc-cccEEEec---cCCHHHHHHHHHHHHH Confidence 7765 4578999999999999999999999999999887654 34667664 446667776554 36 Q ss_pred HhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccC-----CCCccccccc--CCCCCCCCCCCCCCcccc Q lcl|Aclame:pro 461 LNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQG-----AMPPQLAQAM--ADQPSQQGGGVDENSSVP 533 (945) Q Consensus 461 v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~-----a~~~~~~~~~--~d~~~~~~g~~dd~e~~~ 533 (945) +++|+||+||+|+++|+||+||||.++.+.+..+..........+ .......+.. .....++.+.++.+++.. T Consensus 448 ~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (563) T protein:vir:95 448 ETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDK 527 (563) T ss_pred hcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCcc Confidence 889999999999999999999999998876544332111111100 0000000000 011111111122222223 Q ss_pred chhHHHHHHHHHHHHhhhhhhhhHHHHHhhccCCcccccc Q lcl|Aclame:pro 534 SEQKNAGLEVLRNLFKSLDANASENLKQVIELTNDDNYLK 573 (945) Q Consensus 534 se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~ 573 (945) +.++++..+..........+...+ .....+-+.+.+ T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 563 (563) T protein:vir:95 528 EIGTDAQIKGDDNVYRTQTSNKGQ----GRKGEKSSDFKH 563 (563) T ss_pred ccccccccccccccccccCccccc----cccCcCcccccC Confidence 333333332222222222222222 222222333333 No 54 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=100.00 E-value=1.1e-80 Score=458.94 Aligned_cols=408 Identities=11% Similarity=0.111 Sum_probs=304.4 Q ss_pred CCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHH Q lcl|Aclame:pro 40 YPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRK 119 (945) Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~ 119 (945) .||+.+..+---+ .+|++.+.....+ +...... ..+......+.| ....+.+.. . T Consensus 1 ~~~~~~~~~~~~m----------------~~F~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~-~ 55 (413) T protein:vir:96 1 MPGVSEIRKDKNL----------------KFFNNKRSPTEES-KAKDEIP----KAPQVVMTLPNF---FKELISDGY-T 55 (413) T ss_pred CCccchhhhhhcC----------------CccccCCCcchhh-hhhcccc----ccccccccchhh---Hhhhccchh-H Confidence 6676665543222 3444433221111 1111000 011111111111 111122222 2 Q ss_pred hhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 120 YRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTI 198 (945) Q Consensus 120 ~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~ 198 (945) .++++++|++||++||++||++||++|++++++. +...|+++.+|. +||++||+++||+. ++.++++. T Consensus 56 ~~~~~~~v~~cI~~ia~~ia~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~PN~~~t~~~f~~~----~~~~lll~ 124 (413) T protein:vir:96 56 KLSDSPEVRMAVDCIADLVSNMTIQLMQNGETGD-------KRIKNDLSRVVDIEPNKYLSRKTFIQW----LVRSMLLE 124 (413) T ss_pred HHhhchHHHHHHHHHHHhhccCceEEEEecCCCc-------cccccHHHHHHHhccccCCCHHHHHHH----HHHHHhhc Confidence 3678999999999999999999999999877654 234699999986 99999999998776 57778899 Q ss_pred CCeEEEEEecCCC-eEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHH Q lcl|Aclame:pro 199 DRGAIVKIRDEQG-NLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIE 277 (945) Q Consensus 199 Gna~i~iird~~G-~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~ 277 (945) |++|++++|+..| .+.+|||++|.+|++..+.+ .. .|.+..+++ .++++||||++.+++++.. .+|.||+. T Consensus 125 Gn~~~~i~r~~~g~~~~~L~~l~~~~v~~~~~~~-~~--~y~~~~~~~---~~~~~evih~k~~~~~~~~--~~G~s~~~ 196 (413) T protein:vir:96 125 GNGNAVVKPQVSGDKIIGLTPISPYKVTFNVSDD-DL--DYSITFDNK---EYDPSTLLHFVLNPSIERP--FIGTGYKV 196 (413) T ss_pred CCeEEEEEEcCCCCceEEEEEecCceeEEEEcCC-eE--EEEEeecCc---EEchhhEEEEeccCCCCCc--cccccHHH Confidence 9999999999877 57899999999999987653 33 344444443 5689999999877665543 36999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCce Q lcl|Aclame:pro 278 ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFT 356 (945) Q Consensus 278 aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k 356 (945) ++.+++..+.++++++.++|. ||++|+|+|+++ +.+++++.++++++|++.++| .|+|+++++++|+. T Consensus 197 ~~~~~i~~~~~~~~~~~~~~~-ng~~p~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~~~~ 265 (413) T protein:vir:96 197 ALKDIVGNLKQASVTKKGFMA-SEYMPNLIVSVD----------SDSDELSDEEGRENFEEMYLKRKEAGKPWIIPEGMV 265 (413) T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccCCccEEEEeC----------CCCCHHHHHHHHHHHHHHhcCccccCceeeecCCcc Confidence 999999999999999999996 577899999874 468999999999999999988 68899999876654 Q ss_pred -eeec-cCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 357 -WIDF-KGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN 434 (945) Q Consensus 357 -~~pL-s~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~ 434 (945) +.++ .++++|+||++++++++++||++|||||.+||.. ++.+++..+|++.||+||++.||++||++|++. T Consensus 266 ~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~-----~~~~~~~~~~~~~~l~P~~~~ie~~ln~~ll~~-- 338 (413) T protein:vir:96 266 NVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVG-----TYNKDEFNNFINTKIMSIAQVIQQTYNKLIVEE-- 338 (413) T ss_pred cccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-- Confidence 4555 4689999999999999999999999999999753 345888999999999999999999999988763 Q ss_pred cceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccc Q lcl|Aclame:pro 435 EKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQA 514 (945) Q Consensus 435 ~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~ 514 (945) ...++|+++.....|.+++++++++++++|++|+||+|+++|+||+||||.++++.+.+++.+... .+ ... T Consensus 339 ~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~-~~-~~~------- 409 (413) T protein:vir:96 339 DMYFSLNPRSLYNYSLTEMVSAGAQMTQLNALRRNEFRNWVGMPPDAEMDDLLVLENYLQQKDLVN-QK-KLI------- 409 (413) T ss_pred CcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccchhhccc-cc-CCC------- Confidence 223344444555669999999999999999999999999999999999999999887666543211 10 000 Q ss_pred cCCCCCCCCCCC Q lcl|Aclame:pro 515 MADQPSQQGGGV 526 (945) Q Consensus 515 ~~d~~~~~~g~~ 526 (945) ++.+ T Consensus 410 --------~~dt 413 (413) T protein:vir:96 410 --------QDET 413 (413) T ss_pred --------CCCC Confidence 0000 No 55 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=100.00 E-value=1.2e-79 Score=453.24 Aligned_cols=395 Identities=11% Similarity=0.071 Sum_probs=296.8 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-+|++++ +.++.++.. +..|.... ... ..+..++.+.||++++|++||++||++||++ T Consensus 1 M~~f~~~~---~~~~~~~~~--------------~~~~~~~~--~~~--~~~~~v~~~~al~~~~V~~~v~~ia~~ia~~ 59 (397) T protein:vir:38 1 MPLLKLNK---SHSQGFSLN--------------DPDWVNFL--TGG--EAQKYVSADTALKNSDIFSLIMQLSGDLAMV 59 (397) T ss_pred Ccchhhhh---cccCcccCC--------------chhhhhhh--cCC--cCCceechHHhhccHHHHHHHHHHHHHHhhC Confidence 55566543 121111110 01121111 111 1234567788999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) ||++. +|+++.|+.+||++||+++||+. ++.+++++|++|++++|+..|++++|+|++| T Consensus 60 p~~~~-----------------~~~~~~l~~~PN~~~s~~~f~~~----~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~ 118 (397) T protein:vir:38 60 RYTSE-----------------SDRSQSIISNPSVTANGYSFWQG----MFAQLLLDGNCYAYRHKNTNGVDLSWEYLRP 118 (397) T ss_pred ccccc-----------------ccHHHHHHhcCCCCCCHHHHHHH----HHHHhhhcCCEEEEEEECCCCcEEEEEEEcC Confidence 99632 35566777899999999998766 5777889999999999999999999999999 Q ss_pred ceeEEEEcCCCceEE-EEEEe-eCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 222 TTIKPILSEDTGIVV-GYVQE-VDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRK 299 (945) Q Consensus 222 s~Vtv~~d~dG~~~~-~Yv~~-~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~n 299 (945) .+|++..+.+|+... .|... ..++....++++||||++++...+ ..+|+||+.+++++++.+.++++++.++|. T Consensus 119 ~~v~i~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~---~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~- 194 (397) T protein:vir:38 119 SQVQPMLLQDGSGLIYNINFDEPAIGYMENVPAADVIHIRLLSKNG---GKTGISPLSALINEQQIKDASNELTLKALK- 194 (397) T ss_pred ceeEEEEcCCCceEEEEEEeccccccceeEecCccEEEecCCCCCC---ccccccHHHHHHHHHHHHHHHHHHHHHHHh- Confidence 999999988876543 33221 123455779999999998764332 237999999999999999999999999996 Q ss_pred CCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 300 GGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARK 379 (945) Q Consensus 300 nGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ee 379 (945) ||++|+|+++++ +.+++++.+++++.|+..+++.|+|+++++++|++|+++++++.|+||++++++.+++ T Consensus 195 ng~~~~~il~~~----------~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~ 264 (397) T protein:vir:38 195 QSVTASAVLTIQ----------KGGLLDAETRIARSKEISKQIHNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQ 264 (397) T ss_pred ccCCccEEEEeC----------CCCCHHHHHHHHHHHHHHhcccccCCceecCCCceEEecCCChhHHHHHHHHHHHHHH Confidence 577899999875 3578899999999999999889999999999999999999999999999999999999 Q ss_pred HHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHH Q lcl|Aclame:pro 380 ICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQG 459 (945) Q Consensus 380 IA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~ 459 (945) ||++|||||++||..+.+ ++|.|++ ..|+++||+|++.+||+++|++|++..+ +++......|.+++++.+++ T Consensus 265 Ia~afgVp~~~lg~~~~~-~~~~e~~-~~~~~~~l~P~~~~ie~~ln~~l~~~~~-----~~~~~~~~~d~~~~~~~~~~ 337 (397) T protein:vir:38 265 IAKVYGVPDSYLNGQGDQ-QSSITQI-SGQYAKSLNRYVQAIVGELNDKLHANIS-----ANIRFAIDAMGDQYASTISS 337 (397) T ss_pred HHHHhCCCHHHhCCCCCc-ccHHHHH-HHHHHHHHHHHHHHHHHHHHHhccChhc-----ccccccccCCHHHHHHHHHH Confidence 999999999999987654 4677654 6688899999999999999999987532 33444455689999999999 Q ss_pred HHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccc Q lcl|Aclame:pro 460 QLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPS 534 (945) Q Consensus 460 ~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~s 534 (945) ++++|++|+||+|+++|++|++|||.+................ +.+..+.+. ++....++ T Consensus 338 ~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~~~~~~~~~~~~~~------------~g~~~~~~~---~e~~~~~~ 397 (397) T protein:vir:38 338 SVKGGTIAGNQARFILQNSGYLAKDLPDPEKEPQQAIQLIQQE------------GGENDGNNS---DERGSDPE 397 (397) T ss_pred HHhCCCcCHHHHHHHhCCCCCCCCccccccccccccccccccc------------cCCCCCCCC---CCCCCCCC Confidence 9999999999999999999999998654433222211111000 000000000 00000001 No 56 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=100.00 E-value=1.5e-79 Score=452.65 Aligned_cols=400 Identities=12% Similarity=0.059 Sum_probs=298.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-|| +++++.+++..+.. .+..... |..........+....++++++|++||++||++||++ T Consensus 1 Mg~f--~~~~~~~~~~~~~~---~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 62 (406) T protein:vir:95 1 MGLF--DRWRRTKRKSKIRA---DTGYVGL-------------FMSGEDVSFLVPGYVRLSDNPEVRMAVHKIADLISSM 62 (406) T ss_pred Ccch--hhhccccccccccc---cchhhhh-------------hccCcccCccccCHHHHhhcHHHHHHHHHHHHhhccC Confidence 4444 34433333222211 1111111 1111111222344567789999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHH-hccCccCChHHHHHHHHHHHHHHHhccCC--eEEEEEecCCCeEEEEEE Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFL-ERPDPYFSEVNSWEYLLGMVLDDILTIDR--GAIVKIRDEQGNLVAITP 218 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL-~rPNp~mT~~eFwetli~~Lv~dlLl~Gn--a~i~iird~~G~pveL~p 218 (945) ||++||+++++.. ...|+++++| .+||++||+++||+. ++.++++.|+ +++++.++..|++++||| T Consensus 63 ~~~~~~~~~~~~~-------~~~~~~~~~l~~~PN~~~t~~~f~~~----~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~ 131 (406) T protein:vir:95 63 TIYLMQNTEDGDI-------RIRNELSRKIDITPYSLMTRKSWMYN----IVYTMLLDGEGNSVVFPKYTADGLIDELVP 131 (406) T ss_pred ceEEEEecCCcce-------eecchHHHHHhhccCCCCCHHHHHHH----HHHHHHhcCCceEEEEEEECCCCcEEEEEE Confidence 9999998776532 2356776666 599999999998776 5666677765 466778899999999999 Q ss_pred cCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 219 VDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYR 298 (945) Q Consensus 219 LdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~ 298 (945) |+|++|++..+.+| |.+..++ ..++++||||++++..+... .+|+||+..+..++..+.++.+++.++|. T Consensus 132 i~~~~v~~~~~~~~-----~~~~~~~---~~~~~~evih~~~~~~~~~~--~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ 201 (406) T protein:vir:95 132 LTPSKVNFLDTPDG-----YQVLYGG---QTFNYDEVLHFIYNPDPERP--YIGRGYRVVLKDIADNLKQATATKKSFMS 201 (406) T ss_pred EcCceeEEEEcCCe-----EEEEecc---EEEchhHEEEeeccCCCCCC--ccccCHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999988775 2222333 35889999999977655443 36999999999999999999999999996 Q ss_pred hCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccC-CCceeeecc-CChhhHHHHHHHHH Q lcl|Aclame:pro 299 KGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSG-GKFTWIDFK-GKRRDMQFKELAEF 375 (945) Q Consensus 299 nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~-~G~k~~pLs-~sp~D~QflE~rk~ 375 (945) ||++|+|+++.+ +.+++++.++++++|.+.++| .|+++++|++ +|.+++++. ++++|+||+|++++ T Consensus 202 -ng~~~~~il~~~----------~~l~~e~~~~~~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~ 270 (406) T protein:vir:95 202 -GKYMPSLIVKVD----------AATAELSSEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVEL 270 (406) T ss_pred -ccCCcceEEEeC----------CCCCHHHHHHHHHHHHHHhccccccCCceeecCCCccccccccCChhHHHHHHHHHH Confidence 578999999875 468999999999999999988 6888888775 456666654 78999999999999 Q ss_pred HHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHH Q lcl|Aclame:pro 376 VARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWN 455 (945) Q Consensus 376 ~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae 455 (945) ++++||++|||||++||.. ++.+++..+|++.||+||+++||++||++|++..+ ..++|+++.....|.+++++ T Consensus 271 ~~~~Ia~~fgVp~~~lg~~-----~~~~~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~-~~~~fd~~~l~~~d~~~~~~ 344 (406) T protein:vir:95 271 DKRTVAGMFGVPAFLLGIG-----EFNRDEYNNFINSTILPIAKGIEQELTRKLLISPD-LYFKFNPRSLYAYDLKELAE 344 (406) T ss_pred HHHHHHHHhCCCHHHcCCC-----CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cEEEeechhhhcCCHHHHHH Confidence 9999999999999999753 34688899999999999999999999998876533 23444445555579999999 Q ss_pred HHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 456 IIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 456 ~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) .+.+++++|++|+||+|+++|+||+||||.++++.+.+++........ ...+++.+..++++ T Consensus 345 ~~~~l~~~G~~t~NE~R~~~gl~p~~~gd~~~~~~n~~~~~~~~~~~~-------------~k~g~~~~~~~~~~ 406 (406) T protein:vir:95 345 VGSNMYVRGIMEGNEVRDWLGLSPKEGLSELVILENYIPLDKIGDQSK-------------LKGGDNSGADGQTD 406 (406) T ss_pred HHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccCccchhhcccccc-------------cCCCCCCCCCCCCC Confidence 999999999999999999999999999999999987765533111000 00011111111111 No 57 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=100.00 E-value=4.8e-79 Score=449.97 Aligned_cols=344 Identities=14% Similarity=0.154 Sum_probs=283.7 Q ss_pred hccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEE Q lcl|Aclame:pro 138 LTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAI 216 (945) Q Consensus 138 IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL 216 (945) ||+|||++||+++ ..+||+++||+ +|||+||+++||+. ++.+++++||+|+++.|+..|+|++| T Consensus 1 ia~lp~~~~~~~~-----------~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~l~l~Gna~~~i~r~~~G~~~~L 65 (348) T protein:vir:93 1 MASLPLKMYEDYK-----------VVNTEVSDLLTVSPNNSLSSFDFINQ----IETIRNEKGNAYVLIERDIYHQPSKL 65 (348) T ss_pred CcccceEeEecCc-----------CcccHHHHHHHhCCCCCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEE Confidence 9999999997543 24699999997 89999999999776 56777899999999999999999999 Q ss_pred EEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 217 TPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDY 296 (945) Q Consensus 217 ~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~ 296 (945) +||+|++|++..+.+++... |.+...++....++++||||++.....+ ..+|+||+..++.+++.+.++++++. T Consensus 66 ~~l~~~~v~~~~~~~~~~~~-y~~~~~~g~~~~~~~~eiih~r~~~~~~---~~~G~s~~~~~~~~i~~~~~~~~~~~-- 139 (348) T protein:vir:93 66 FLLNPDVVEMLIENQSRELY-YSIHAATGNKLIVHNMDMLHFKHIVASN---MVQGISPIDVLKNTTDFDNAVRTFNL-- 139 (348) T ss_pred EEEcCCceEEEEeCCCcEEE-EEEEcCCCeEEEEccccEEEecCCCCCC---ceeeccHHHHHHHHHHHHHHHHHHHH-- Confidence 99999999999888776553 4444555556789999999998654433 23799999999999999999998863 Q ss_pred HHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHH Q lcl|Aclame:pro 297 YRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFV 376 (945) Q Consensus 297 F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~ 376 (945) .+++..|+++++. ++.++++++++++++|++.+. |+|+++++++|++|++++++++|+||+|+++++ T Consensus 140 -~~~~~~~~~i~~~----------~~~l~~e~~~~~~~~~~~~~~--n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 206 (348) T protein:vir:93 140 -TEMQKPDSFMLKY----------GSNVSTEKRQQVLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLT 206 (348) T ss_pred -HhcCCCceeEEec----------CCCCCHHHHHHHHHHHHHHhh--cCCCeeecCCCceEEEcCCChhHHHHHHHHHHH Confidence 3556666777655 346899999999999999874 678899999999999999999999999999999 Q ss_pred HHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cceeEEEeechh--hcCHHHH Q lcl|Aclame:pro 377 ARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN-EKDIKLWFKEDD--LEKERDW 453 (945) Q Consensus 377 ~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~-~~g~~f~fd~~~--l~D~ker 453 (945) +++||++|||||++||..+++|++|+|++.++|+++||+|+++.||++||++|++..+ ..+++|+|+... ..|.+++ T Consensus 207 ~~~Ia~~fgVP~~~lg~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~ 286 (348) T protein:vir:93 207 RERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQ 286 (348) T ss_pred HHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHH Confidence 9999999999999999999999999999999999999999999999999998876543 346667766555 4689999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCcc Q lcl|Aclame:pro 454 WNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSS 531 (945) Q Consensus 454 ae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~ 531 (945) ++++++++++|++|+||+|+++|+||+||||+++++.+.+++.... ..+ ....+|+.+.++. T Consensus 287 a~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~-~~~---------------~~~~gg~~n~~~~ 348 (348) T protein:vir:93 287 AEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPL-ELR---------------KSLKGGDKNVNES 348 (348) T ss_pred HHHHHHHHhCCCCCHHHHHHHhCCCCCCCcCeEeecccccccccch-hhc---------------ccccCCCCCcCCC Confidence 9999999999999999999999999999999999988877543211 000 0011111111111 No 58 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=100.00 E-value=6.7e-78 Score=443.68 Aligned_cols=395 Identities=12% Similarity=0.126 Sum_probs=289.9 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-|| | .|++.... .++.+.+. ..+..... . ...+... .+..+|+||+||++||++||++ T Consensus 1 Mg~~--~-~f~~k~~~------~~~~~~~~--~~~~~~~~--~-------~~~~~~~-~~~~~~~V~~~I~~ia~~iA~~ 59 (403) T protein:vir:80 1 MGLF--N-FFRRKTRS------EPTNAISW--FLTQEAYD--T-------LAIPGYT-RLSDNPEVRMAVHKIAELISSM 59 (403) T ss_pred Cccc--c-cccccccc------cccchhhh--hccccccc--c-------cccchhh-hhhhhHHHHHHHHHHHHhhhhC Confidence 4445 2 24432211 11111110 00000000 0 0011111 2346899999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhc--cCCeEEEEEecCCCeEEEEEE Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILT--IDRGAIVKIRDEQGNLVAITP 218 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl--~Gna~i~iird~~G~pveL~p 218 (945) |+++|++.+++.. ...|+++++|+ +|||+||+++||+.+ +.++++ .|++|+++.++..|++++||| T Consensus 60 p~~~~~~~~~g~~-------~~~~~~~~lL~~~PN~~~t~~~f~~~~----v~~~ll~~~Gna~i~~~~~~~g~~~~L~~ 128 (403) T protein:vir:80 60 TIHLMQNTDNGDI-------RIKNELSRKIDINPYSLMTRKAWMYNI----VYTMLLDGEGNSVVFPKYTTSGLIDELIP 128 (403) T ss_pred ceEEEEecCCcee-------ecCChHHHHHhccCCcCCCHHHHHHHH----HHHHhhcCCccEEEEEEEcCCCcEEEEEE Confidence 9999998776532 24689999887 999999999998864 555555 478899999999999999999 Q ss_pred cCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 219 VDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYR 298 (945) Q Consensus 219 LdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~ 298 (945) |+|..|++..+.+|..+ .|. + ..++++||||++.++.+...+ +|+||+..++.+++...++++++.++|. T Consensus 129 l~p~~v~~~~~~~g~~~-~y~----~---~~~~~~eiih~~~~~~~~~~~--~G~s~~~~~~~~i~~~~~~~~~~~~~~~ 198 (403) T protein:vir:80 129 LAPSKVSFVDTDTGYQI-WYQ----G---KAYNYDEVLHFIVNPDPEKPY--MGRGYRVVLKDIVNNLKQATTTKKSFMS 198 (403) T ss_pred EcCCeeEEEEcCCceEE-EEe----e---cccchhhEEEEeccCCCcCcc--ccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999988776432 231 2 357889999999776665432 5999999999999999999999999996 Q ss_pred hCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCC-ceeeecc-CChhhHHHHHHHHH Q lcl|Aclame:pro 299 KGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGK-FTWIDFK-GKRRDMQFKELAEF 375 (945) Q Consensus 299 nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G-~k~~pLs-~sp~D~QflE~rk~ 375 (945) ||.+|+||+..+ +.+++++.++++++|.+.+.| .++|++++++++ .++..+. +++.|+|++|.+++ T Consensus 199 -ng~~p~~il~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~ 267 (403) T protein:vir:80 199 -GKYMPSLIVKVD----------AATAELSSEEGRNAVFKKYLEASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVEL 267 (403) T ss_pred -ccCCcceEEEeC----------CCCChHHHHHHHHHHHHHHhhhhhcCCeeeecccccccceeccCCHHHHHHHHHHHH Confidence 577899999875 356888889999999888876 688898888655 3444443 57899999999999 Q ss_pred HHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeec--hhhcCHHHH Q lcl|Aclame:pro 376 VARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKE--DDLEKERDW 453 (945) Q Consensus 376 ~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~--~~l~D~ker 453 (945) ++.+||++|||||++||..+ +.+++..+|+++||+|++++||++||++|++.. +++|+|+. ....|.++| T Consensus 268 ~~~~Ia~~fgVPp~~lg~~~-----~~~~~~~~f~~~~l~P~~~~ie~~l~~kll~~~---~~~~~f~~~~ll~~d~~~~ 339 (403) T protein:vir:80 268 DKRTVAGIFGVPAFLLGVGK-----YDKDEYNNFINSTILPIAKGIEQELTRKLLISP---DLYFKFNPRSLYAYDLKEL 339 (403) T ss_pred hHHHHHHHhCCCHHHcCCCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CcEEEeechhhhccCHHHH Confidence 99999999999999998532 235566789999999999999999999887643 34566654 445699999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 454 WNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 454 ae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) ++++.+++++|+||+||+|+.+|+||+||||.++++.+.+++........ ...++++++..+++ T Consensus 340 ~~~~~~~~~~Gi~t~NE~R~~~gl~p~~ggd~~~~~~n~~pl~~~~~~~~-------------~k~ge~~~~~~~~~ 403 (403) T protein:vir:80 340 AEVGSNMYVRGLMEGNEVRDWLGLSPKEGLSELVILENYIPLDKIGDQNK-------------LKGGEKGGADGQTD 403 (403) T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccchhhccchhh-------------ccCCCCCCCCCCCC Confidence 99999999999999999999999999999999998887665532111000 00111111111111 No 59 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=100.00 E-value=3.7e-76 Score=434.12 Aligned_cols=513 Identities=15% Similarity=0.118 Sum_probs=327.7 Q ss_pred CcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhh Q lcl|Aclame:pro 42 GFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYR 121 (945) Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~A 121 (945) =|.+- -||+.+-|=+..|+. ...+......+ . .|-.|. .....+++.+ T Consensus 1 ~~~~~-------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~----~------~~~~pp--~~~~~La~~~ 48 (540) T protein:vir:41 1 MFNYH-------------LSIKSLEKYRAIKGD-------TDSQALKEDRF----E------EYVEPK--VHPLVLLSLL 48 (540) T ss_pred CCCcc-------------cChhhccchhhhhcc-------ccccccccCCC----C------ccccCC--CCHHHHHHHH Confidence 00000 012211111111111 01111110000 0 111111 1123456777 Q ss_pred hccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCe Q lcl|Aclame:pro 122 FNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRG 201 (945) Q Consensus 122 m~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna 201 (945) ..+++|++||++||++||++|++++... +.+..+ .||++||+++||+. ++.+++++||+ T Consensus 49 ~~n~~v~scI~~ia~~ia~~~~~i~~~~---------------~~~~~~--lpN~~~t~~~f~~~----~v~dlll~Gna 107 (540) T protein:vir:41 49 QVNPYHASACSIKANDILRTGYLIDGDD---------------GGVEEL--LRACRPSFEFILLQ----ALEDLQVFNYC 107 (540) T ss_pred HhcHHHHHHHHHHHHHHhcCCceEecCc---------------cchhhh--ccCCCCCHHHHHHH----HHHHHHhcCCe Confidence 7899999999999999999999986421 223333 49999999998765 67788999999 Q ss_pred EEEEEecCCCeEEEEEEcCCceeEEEEcCCCceE------EEEE---------EeeCCceeeeecccceeeeeeccCCCC Q lcl|Aclame:pro 202 AIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIV------VGYV---------QEVDGAIVAHFDKRDVVLFRQNLTPDV 266 (945) Q Consensus 202 ~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~------~~Yv---------~~~dG~~~~~~~a~DVIh~r~n~~~d~ 266 (945) |++++|+..|+|++|+||+|.+|++..+.++... ..|. ....|.....++++||||++...+.+ T Consensus 108 yv~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eViHir~~~~~~- 186 (540) T protein:vir:41 108 TLEVVRDDQGEPVRLDYIPAHTVRVHRDGSRYMQTWDGIHVTYFKDYRYEGEVNPDNGEDQDGVGANEIIFIHLPSPIC- 186 (540) T ss_pred EEEEEECCCCcEEEEEEeCCcceEEeEcCceeEeeecCceeeeeecccccceeeccccccceeecccceEEecCCCCCC- Confidence 9999999999999999999999998776543211 0111 11234445678999999997543222 Q ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC--cc Q lcl|Aclame:pro 267 YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG--DY 344 (945) Q Consensus 267 ~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG--~N 344 (945) +.+|+||+.+++.++..+.++++++.++|. ||++|+|||++++..........+..++.++++++.|++.++| +| T Consensus 187 --~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~-Ng~~p~giL~~~g~l~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~n 263 (540) T protein:vir:41 187 --SYYGVPRYLSAAPSILAMQKIDEYNYAFFD-NYTIPSYVITVTGEFEDEMELGSDGEPTGRTVLQGLIEDNFKYLKEA 263 (540) T ss_pred --CcccccHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCceEEEeCcccCchhccchHHHHHHHHHHHHHHHHHhcccccc Confidence 347999999999999999999999999996 5789999999986554443334455566677888888888776 58 Q ss_pred cCcccccC------CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCC--CcccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 345 TQVPILSG------GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGS--NKATAEVMASLTKAKGLEP 416 (945) Q Consensus 345 agkp~VL~------~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~g--T~SN~Eqq~~~F~~~tL~P 416 (945) +|+++||+ +|++|++++++++|+||++++++++++||++|||||++||+.+.+ |++|+|++...|+++||+| T Consensus 264 ag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~~~~~n~sn~eq~~~~f~~~tL~P 343 (540) T protein:vir:41 264 PHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESVVRP 343 (540) T ss_pred ccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccCCCCCcccHHHHHHHHHHHHHHH Confidence 99999984 799999999999999999999999999999999999999987654 5789999999999999999 Q ss_pred HHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccccccccccccc Q lcl|Aclame:pro 417 LMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPE 496 (945) Q Consensus 417 ll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~pe 496 (945) ++++||++||++|.+... .+++|+|+...+.+. ++++.+.+++++|++|+||+|+.+ +|+++||..+....++.+. T Consensus 344 ~~~~ie~~ln~~L~~~~~-~~~~i~f~~~~ll~~-D~~~~~~~lv~~G~lT~NE~Re~L--~g~e~gdd~~l~p~n~~~~ 419 (540) T protein:vir:41 344 QQEIVSSVLTDFIQLKLD-PGARFVFNEEILMES-EFVHNYALLVQCGVLTPSEVREKL--FGLDGGPDMFMVPSSIGKS 419 (540) T ss_pred HHHHHHHHHHHhhhhccC-CceEEEecchhhcch-HHHHHHHHHHhCCCCCHHHHHHHh--CcCcCCCcccccccccccc Confidence 999999999999887654 478899998887764 456667789999999999999753 5566666555444444333 Q ss_pred ccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHhhhhhhhhHHHHHhhccCCccccccchH Q lcl|Aclame:pro 497 DEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAGLEVLRNLFKSLDANASENLKQVIELTNDDNYLKEKE 576 (945) Q Consensus 497 d~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~e~~ 576 (945) +..........+.+.+.........+.-..+.++..+.+..+ +..+.....+.....+. .. T Consensus 420 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~----~~ 480 (540) T protein:vir:41 420 AMKRQKRNYEKNQINEIKRTYAKYKPRIQEIISSESPLEDKK---------------KKIDEVLSDFRAEAYEN----GK 480 (540) T ss_pred cccccccccCCCCccccccccchhcccccCcccccccccccc---------------ccccccccccCCccccc----hh Confidence 221111110000000000000000000011111111111110 00000011122222222 34 Q ss_pred HHHHHHHhhhhHHHHHhhhhhhhcccccCCCcccccchhhHHHHHHhhccchhhhhhhhc--ccccchhhh Q lcl|Aclame:pro 577 LLTRVLKSVGLDSVSEFIENNSQTDVEVSAKDILSFKYNSLVEDETIYATEKDIVLRLLG--KNSLDHRET 645 (945) Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 645 (945) +++.++++.|+.+- +++-|+.--+.++.+. .|-++++ ||-.|||-|+-. -.-+..||. T Consensus 481 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 540 (540) T protein:vir:41 481 KMLSIAGDMGTMSA-----INRGVSMIPPKPSNLE-AYEDLLA-----ASVDDIVERIRHYLYKVIGWREL 540 (540) T ss_pred HHHHHhhhhhhhhh-----hhcCceecCCCCcchH-HHHHHHH-----hhHHHHHHHHHHHHHHHhhhccC Confidence 55888899998764 3455665555555543 4666654 566677655310 001112332 No 60 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=100.00 E-value=5.7e-77 Score=438.57 Aligned_cols=394 Identities=13% Similarity=0.081 Sum_probs=288.3 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .- =.|||..+- -|.. + .+.+.. |.++.++. ....+.+.++++++|++||++||++||++ T Consensus 1 mg--~~~~~~~~~---~~~~-~------~~~~~~-------~~~~~~~~--~~~~t~~~~~~~~~v~~cv~~Ia~~ia~~ 59 (403) T protein:vir:10 1 MG--FKSWITEKL---NPGQ-R------IIRDME-------PVSHRTNR--KPFTTGQAYSKIEILNRTANMVIDSAAEC 59 (403) T ss_pred Cc--chhhhhhcc---chhh-h------hhhccc-------ccccccCC--cccccHHHHHHHHHHHHHHHHHHHHHhhC Confidence 11 123331111 0110 0 000000 11111110 01123466788999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|++...... +.....|++++||+ +|||+||+++||+. ++.++++.||+|+++.+ ..|+|++ T Consensus 60 p~~v~~~~~~~~~----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~~ll~Gnayi~~~~------~~l~~l~ 125 (403) T protein:vir:10 60 SYTVGDKYNIVTY----ANGVKTKTLDTLLNVRPNPFMDISTFRRL----VVTDLLFEGCAYIYWDG------TSLYHVP 125 (403) T ss_pred ceeEeeccccccc----ccccccchHHHHHhhCCCCCCCHHHHHHH----HHHHHhhcCCeEEEEeC------ceeEeec Confidence 9999976554322 22345789998887 89999999999876 57778899999977532 3689999 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccC-CCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLT-PDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRK 299 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~-~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~n 299 (945) |..|++..+.++ .++.|++ .+ ...+.++|++|++.... +....+.+|+||+.+++++++.+.+++++++++|. T Consensus 126 ~~~~~v~~~~~~-~~~~~~~--~~--~~~~~~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~- 199 (403) T protein:vir:10 126 AALMQVEADANK-FIKKFIF--NN--QINYRVDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLD- 199 (403) T ss_pred CcceEEEEcCCc-eEEEEEe--cC--ceeecccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh- Confidence 999998877654 3433432 22 24577899999974432 11122347999999999999999999999999996 Q ss_pred CCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccC--ChhhHHHHHHHHHH Q lcl|Aclame:pro 300 GGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKG--KRRDMQFKELAEFV 376 (945) Q Consensus 300 nGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~--sp~D~QflE~rk~~ 376 (945) ||++|+|||+.+ +.++++++++++++|++.++| .|+|+++++++|++|+++++ ++.|+||+|+++++ T Consensus 200 ng~~~~gil~~~----------~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~ 269 (403) T protein:vir:10 200 NGTVIGLILETD----------EILNKKLRERKQEELQLDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGF 269 (403) T ss_pred ccCCcceEEEeC----------CCCCHHHHHHHHHHHHHHhCCcccCcceeecCCCceeEEecccCCHHHHHHHHHHHHH Confidence 578999999864 468999999999999999988 68999999999999999985 57899999999999 Q ss_pred HHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeech--hhcCHHHHH Q lcl|Aclame:pro 377 ARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKED--DLEKERDWW 454 (945) Q Consensus 377 ~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~--~l~D~kera 454 (945) +++||++|||||++||. ++++|+|++.+.|+++||.||+++||++++++|.. .+.|+++.. ...|.++++ T Consensus 270 ~~~Ia~~fgVPp~~lg~---~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~~L~~-----~~~~d~~~~~~l~~D~~~~~ 341 (403) T protein:vir:10 270 NKSICLAFGVPQVLLDG---GNNANIRPNIELFYYMTIIPMLNKLTSSLTFFFGY-----KITPNTKEVAALTPDKEAEA 341 (403) T ss_pred HHHHHHHhCCCHHHcCC---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----eeeeccchhhhcccCHHHHH Confidence 99999999999999974 57889999999999999999999999999998832 344555544 335899999 Q ss_pred HHHHHHHhCCCcCHHHHHHHHhCCCCC--CccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 455 NIIQGQLNTGFRSINEARMEKGLEPVP--WGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 455 e~~~~~v~~GimT~NEaRe~lGlpPve--GGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +++++++++|++|+||+|+++|+||++ ++|.++++.+...... ...++. +.++ +++.+++ T Consensus 342 ~~~~~~~~~G~lT~NE~R~~~gl~pi~~~~~d~~~~p~n~~~~~~-~~~~~e----------~~~~-----~~~~~g~ 403 (403) T protein:vir:10 342 KHLTSLVNNGIITGNEARSELNLEPLDDEQMNKIRIPANVAGSAT-GVSGQE----------GGRP-----KGSTEGD 403 (403) T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCCcccccccccccccccccc-cCCCCc----------CCCC-----CCCcCCC Confidence 999999999999999999999999995 7888888776532111 000000 0000 1111111 No 61 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=100.00 E-value=2.8e-76 Score=434.81 Aligned_cols=382 Identities=15% Similarity=0.157 Sum_probs=290.3 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-||.+. .+++.+......... +. + ..+.+. ......++.+.|+++++|++||++||++||++ T Consensus 1 Mg~~~~~-~~~~~~~~~~~~~~~-~~-----------~-~~~~~~---~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~ 63 (385) T protein:vir:10 1 MGLLTPR-NFNKRKAKNMVYPSN-PA-----------F-FTTTVG---GMQLSYVSALSALQNTNVYSVINRIASDVASA 63 (385) T ss_pred Cccccch-hcccccccccccccc-hh-----------h-hhhhcc---ccCccccCHHHhhccHHHHHHHHHHHHHHhhC Confidence 3445331 222222211111000 00 0 001111 11123466788999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) ||++++ |+...||++|||+||+++||+. ++.+++++|++|+++.++ +.+++|+++ T Consensus 64 p~~v~~-----------------~~~~~ll~~PN~~~t~~~f~~~----~~~~l~l~Gn~~~~i~r~----~~~~~p~~~ 118 (385) T protein:vir:10 64 HFKTEN-----------------TATLNRLESPSSLIGRFSFWQG----ALMQLCLSGNDYIPLVGQ----NLEHIPNSD 118 (385) T ss_pred ceeeec-----------------cchhhhhhcCCCCCCHHHHHHH----HHHHhhhcCCeEEEEEcC----ceeEeecCC Confidence 999873 4566789999999999998776 577778999999998875 567999999 Q ss_pred ceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnG 301 (945) .+|++..+.++ .++ ++....++....++++||||++... ++...+.+|+||+..+++++..+.++++++.++|. || T Consensus 119 ~~v~~~~~~~~-~~~-~~~~~~~~~~~~~~~~eiihik~~~-~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~-ng 194 (385) T protein:vir:10 119 VQINYLPGNMG-IVY-TVLESNDRPQMVLRQDQMLHFRLMP-DPQYRYLIGRSPLESLQNALNLDDKASKSNMSAME-NQ 194 (385) T ss_pred ceEEEEEcCCc-eEE-EEEEcCCceEEEEccccEEEeccCC-CCcccccccccHHHHHHHHHHHHHHHHHHHHHHHh-cc Confidence 99988876654 333 3344556677889999999998654 33334458999999999999999999999999996 57 Q ss_pred CCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHH-HHHHHHHHHH Q lcl|Aclame:pro 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFK-ELAEFVARKI 380 (945) Q Consensus 302 a~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~Qfl-E~rk~~~eeI 380 (945) ++|+|++++++. ..++++++++++.|++.++|.|+|+++++++|++|+++++++.|+|++ |++++++++| T Consensus 195 ~~~~gil~~~~~---------~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~I 265 (385) T protein:vir:10 195 INPAGKLTISNY---------LSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQI 265 (385) T ss_pred CCcceEEEeCCC---------CCCHHHHHHHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHH Confidence 799999998632 346789999999999999999999999999999999999999999985 9999999999 Q ss_pred HHHhcCChhhccccc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHH Q lcl|Aclame:pro 381 CAVYQVSPQDVGILE--GSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQ 458 (945) Q Consensus 381 A~aFGVPP~lLG~~e--~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~ 458 (945) |++|||||++||..+ .++++|+|++... +.+||+||+++|+++++++|+.. .++|+++.....|.++++++++ T Consensus 266 a~~fgVp~~~lg~~~~~~~~~sn~eq~~~~-~~~~l~P~~~~ie~~l~~~l~~~----~~~f~~~~ll~~d~~~~~~~~~ 340 (385) T protein:vir:10 266 SKAFGVPSDILGGGTSTESQHSNIDQIKAT-YLANLNSYVNPIVDELRLKMNAP----DLELDIKDMLDVDDSALINQVS 340 (385) T ss_pred HHHhCCCHHHcCCccCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCc----eEEeechhhhccCHHHHHHHHH Confidence 999999999999754 4578999877555 46799999999999999988643 3566666666789999999999 Q ss_pred HHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCC Q lcl|Aclame:pro 459 GQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDEN 529 (945) Q Consensus 459 ~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~ 529 (945) +++++|++|+||+|+.+|++|+|+++.+........+ .+|..+++ T Consensus 341 ~~~~~G~~T~NE~R~~~g~~p~p~~~~~~~~~~~~~~--------------------------~~g~~~dn 385 (385) T protein:vir:10 341 NLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTTQV--------------------------KGGDEGDN 385 (385) T ss_pred HHHhCCCcCHHHHHHHhCCCccCCCCCccccCccccc--------------------------CCCCCCCC Confidence 9999999999999999999999866543322211100 01111111 No 62 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=100.00 E-value=1.2e-76 Score=436.79 Aligned_cols=387 Identities=11% Similarity=0.062 Sum_probs=290.7 Q ss_pred eeeee--cceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 62 IIIFR--KNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLT 139 (945) Q Consensus 62 ~~~~k--~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IA 139 (945) .-||- +++++++.. +.. .....+...++ ..+..++...++++++|++||++||++|| T Consensus 1 MGl~~~~~~~~~~~~~---------~~~------~~~~~~~~~~~------~~~~~vt~~~al~~~~v~~~i~~Ia~~iA 59 (394) T protein:vir:62 1 MGLRDRFSNYLFKKAE---------KRG------YLDNVLGKSIR------YSGVYVTDSNILQSSDVYELLQDISNQMV 59 (394) T ss_pred CchhhhhhhhccCCCC---------chh------hhhhhhhcccc------cCccccChhhhhccHHHHHHHHHHHHhhc Confidence 22321 122211111 000 00011111111 12245677889999999999999999999 Q ss_pred cCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEc Q lcl|Aclame:pro 140 SKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPV 219 (945) Q Consensus 140 sLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pL 219 (945) ++||++|+++.+ +..+|+++.|+.+|||+||+++||+. ++.++++.|++|+++.++.. .+ T Consensus 60 ~lp~~v~~~~g~---------~~~~~~~~~Ll~~PN~~~t~~~f~~~----~~~~lll~Gn~~~~i~~~~~----~~--- 119 (394) T protein:vir:62 60 LADIVVEDEFGN---------EIKDDIALQILRNPNNYLTQSEFIKL----MTNTYLLEGETFPILNGAQI----HL--- 119 (394) T ss_pred ccceEEEcCCCc---------ccchhhHHHHhccCCCCCCHHHHHHH----HHHHHHhcCCeEEEEeccee----ec--- Confidence 999999975321 34679999999999999999999876 56778899999999765433 22 Q ss_pred CCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 220 DGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRK 299 (945) Q Consensus 220 dPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~n 299 (945) +..|++..++++... | .. + ...++++||+|++.+. .++ .+|+||+..+.+++..+.++++++.++|.| T Consensus 120 -~~~~~~~~~~~~~~~--~--~~-~--~~~~~~~eiih~r~~~-~d~---~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n 187 (394) T protein:vir:62 120 -ASNVFTELDDNLVEH--F--NI-G--GHEIPPCMIRHVKNIG-ADH---LRGKGILDLGRDTLEGVMSAEKTLTDKYKK 187 (394) T ss_pred -cccceEEECCceEEE--E--ee-C--CEEechhheEEecCcC-CCC---ccccChHHHHHHHHHHHHHHHHHHHHHHHc Confidence 235566666654322 2 22 2 2468999999997543 332 369999999999999999999999999975 Q ss_pred CCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCc--eeeeccCChhhHHHHHHHHHH Q lcl|Aclame:pro 300 GGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKF--TWIDFKGKRRDMQFKELAEFV 376 (945) Q Consensus 300 nGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~--k~~pLs~sp~D~QflE~rk~~ 376 (945) |.+|+|+|++++. ...++++.+++++.|++.++| .|+|+++|++.|+ ++++++.+++|+||+|+++++ T Consensus 188 -g~~~~~il~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~ 258 (394) T protein:vir:62 188 -GGLLTFLLNLDAH--------INPQNGAQSKLINAILDQLESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVY 258 (394) T ss_pred -cCCcceEEEeCCC--------CCcCHHHHHHHHHHHHHHhccccccCceeEeeCCCceeEEecCCCcchHHHHHHHHHH Confidence 6689999998643 133577789999999999988 6889999887765 666889999999999999999 Q ss_pred HHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHH Q lcl|Aclame:pro 377 ARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNI 456 (945) Q Consensus 377 ~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~ 456 (945) +++||++|||||++||. .+++|+|++.++|+++||+||+++||++|+++|+......+++|+||...+.+..+++++ T Consensus 259 ~~~Ia~~fgVPp~~lg~---~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kll~~~~~~~~~~~fd~~~~~~~~~~~~~ 335 (394) T protein:vir:62 259 KKDLGKFLGINVDTYTE---LIKEDIEKAMMYIHNKAVRPIMKNFEDHLSLLFYAQNSGKRIKFKINILDFVTYSNKTNI 335 (394) T ss_pred HHHHHHHhCCCHHHcCC---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccccCceEEEechhhhcCHHHHHHH Confidence 99999999999999985 356899999999999999999999999999988766556678999999999999999999 Q ss_pred HHHHHhCCCcCHHHHHHHHhCCCC--CCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCC Q lcl|Aclame:pro 457 IQGQLNTGFRSINEARMEKGLEPV--PWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDEN 529 (945) Q Consensus 457 ~~~~v~~GimT~NEaRe~lGlpPv--eGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~ 529 (945) +.+++++|+||+||+|+++|+||+ +|||.++++.+..+..... + ......+|+.+++ T Consensus 336 ~~~~~~~g~~T~NE~R~~~gl~p~~~~~gd~~~~~~n~~~~~~~~------~----------~~~~~kgge~~en 394 (394) T protein:vir:62 336 GYNLVRTAITSPDNVADMLGFPKQNTKESQAIYISNDVTEIGKKE------A----------TDGSLGGGEENEN 394 (394) T ss_pred HHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeecccccccccccc------c----------ccccCCCCCCCCC Confidence 999999999999999999999999 6888888776644332110 0 0111112222222 No 63 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=100.00 E-value=1.1e-75 Score=431.49 Aligned_cols=380 Identities=15% Similarity=0.149 Sum_probs=291.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .=||-+ +.|+|.... +. .++.. ..+.. +.++. .....++.+.++++++|++||++||++||++ T Consensus 1 Mg~~~~-~~~~k~~~~-~~---~~~~~--------~~~~~-~~~~~---~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~ 63 (383) T protein:vir:10 1 MGLLTP-KNFSKRNAK-NM---VYPSN--------PAFFT-TTVGG---MQLSYVSALSALQNTNVYSVINRIASDVSSA 63 (383) T ss_pred CCcccc-ccccccccc-cc---ccccc--------hhhhh-hhccC---ccccccchhHhhcchHHHHHHHHHHHhhccC Confidence 333322 122222210 00 01100 01110 11111 1122356778999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) ||++++ |+...||++||++||+++||+. ++.++++.|++|+++.++ +.+++|++| T Consensus 64 ~~~~~~-----------------~~~~~ll~~PN~~~t~~~f~~~----~~~~l~l~Gn~~~~i~~~----~~~~~p~~~ 118 (383) T protein:vir:10 64 HFKTEN-----------------TATLNRLESPSSLIGRFSFWQG----ALMQLCLSGNDYIPLVGQ----NLEHIPNSD 118 (383) T ss_pred ceeecc-----------------cchhhhhhCCCCCCCHHHHHHH----HHHHhhhcCCeEEEEEcC----ceeEeecCc Confidence 998863 4556789999999999998776 577788999999998765 567899999 Q ss_pred ceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnG 301 (945) .+|++..+.++ .++ ++....++....++++||||++... ++...+.+|+||+.++++.+..+.++++++.++|. || T Consensus 119 ~~v~~~~~~~~-~~~-~~~~~~~~~~~~~~~~evih~r~~~-~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~-ng 194 (383) T protein:vir:10 119 VQINYLPGNMG-IVY-TVLESNDRPKMVLRQDQMLHFRLMP-DPQYRYLIGRSPLESLQNALNLDDKASKSNMSAME-NQ 194 (383) T ss_pred ceEEEEEcCCc-eEE-EEEEcCCceEEEEcccceEEeccCC-CCcccccccccHHHHHHHHHHHHHHHHHHHHHHHh-cc Confidence 99988776654 333 3344556677889999999997443 44444568999999999999999999999999996 56 Q ss_pred CCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHH-HHHHHHHHHH Q lcl|Aclame:pro 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFK-ELAEFVARKI 380 (945) Q Consensus 302 a~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~Qfl-E~rk~~~eeI 380 (945) .+|+|+|++++. ..++++.+++++.|++.++|+|+|+++++++|++|+++++++.|+|++ +++++++++| T Consensus 195 ~~~~~il~~~~~---------~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~I 265 (383) T protein:vir:10 195 INPAGKLTISNY---------LSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQI 265 (383) T ss_pred CCcceEEEeCCC---------CCCHHHHHHHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHH Confidence 789999988632 346889999999999999999999999999999999999999999985 8999999999 Q ss_pred HHHhcCChhhccccc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHH Q lcl|Aclame:pro 381 CAVYQVSPQDVGILE--GSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQ 458 (945) Q Consensus 381 A~aFGVPP~lLG~~e--~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~ 458 (945) |++|||||++||..+ ..+++|+|++...| .+||+|+++.||++++++|+.. .++|+++.....|.+++++++. T Consensus 266 a~afgVPp~~lg~~~~~~~~~sn~eq~~~~~-~~~l~P~~~~ie~~l~~~l~~~----~~~f~~~~l~~~d~~~~~~~~~ 340 (383) T protein:vir:10 266 SKAFGVPSDILGGGTSTESQHSNIDQIKATY-LANLNSYVNPIVDELRLKMNAP----DLELDIKDMLDVDDSILINQVS 340 (383) T ss_pred HHHhCCCHHHcCCccCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCc----eEEeechhhhccCHHHHHHHHH Confidence 999999999999754 56789999887655 5699999999999999988642 4667777777789999999999 Q ss_pred HHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCC Q lcl|Aclame:pro 459 GQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDE 528 (945) Q Consensus 459 ~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd 528 (945) +++++|++|+||+|+++|++|++|||.+....+..+. .++.++ T Consensus 341 ~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~~~~~~~---------------------------~gGd~e 383 (383) T protein:vir:10 341 NLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNET---------------------------KGGDDK 383 (383) T ss_pred HHHhCCCcCHHHHHHHhCCCcccCCcccccCCCcccC---------------------------CCCCCC Confidence 9999999999999999999999999875433211100 111111 No 64 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=100.00 E-value=1.3e-75 Score=431.07 Aligned_cols=410 Identities=15% Similarity=0.141 Sum_probs=288.1 Q ss_pred hHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHH-HHh-ccCccCChHHHH----HHHHHH Q lcl|Aclame:pro 117 FRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILE-FLE-RPDPYFSEVNSW----EYLLGM 190 (945) Q Consensus 117 ~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~-LL~-rPNp~mT~~eFw----etli~~ 190 (945) ++..+-.+++|++||++||++||++|++++++....... +.....+.+.. ++. +||+.|+++.|+ .+|+++ T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~ 77 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPD---RDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQT 77 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCccccc---chhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHH Confidence 777788899999999999999999999998765332211 11222334443 444 799999887543 467888 Q ss_pred HHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCce-------EE------------------EEE--EeeC Q lcl|Aclame:pro 191 VLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGI-------VV------------------GYV--QEVD 243 (945) Q Consensus 191 Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~-------~~------------------~Yv--~~~d 243 (945) ++.+++++||+|++++|+..|+|++|+||+|++|++..+..+.+ .+ .+. .... T Consensus 78 ~~~~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (467) T protein:vir:31 78 AWTDYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGS 157 (467) T ss_pred HHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeecccc Confidence 99999999999999999999999999999999999877654211 11 000 0112 Q ss_pred CceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchh Q lcl|Aclame:pro 244 GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQ 323 (945) Q Consensus 244 G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~ 323 (945) ++....++++||||++...+.+ ..+|+||+.++++++..+.+++++++++|. ||++|+|||.+++ +. T Consensus 158 ~~~~~~~~~~diih~r~~~~~~---~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~-ng~~p~gil~~~~---------~~ 224 (467) T protein:vir:31 158 TGTSVSNPANELIFKRNHSPLY---PHYGAPDIIPAVKTIRGDSAAQDYNIDFFE-NDGVPRIAIIVKG---------AE 224 (467) T ss_pred ccceeEeccccEEEecCCCCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCceEEEecC---------cC Confidence 3445678999999997554332 347999999999999999999999999996 5778999998753 46 Q ss_pred ccHHHHHHHHHHHHHHhcC------------cccCcccccCCCceeeecc--------CChhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 324 LSREQLESIQRQLQAIMMG------------DYTQVPILSGGKFTWIDFK--------GKRRDMQFKELAEFVARKICAV 383 (945) Q Consensus 324 LS~Eq~erlKe~we~~~sG------------~Nagkp~VL~~G~k~~pLs--------~sp~D~QflE~rk~~~eeIA~a 383 (945) +++++.+++++.|++.++| .|++++++++.|+++.+++ +++.|+||++++++++++||++ T Consensus 225 l~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~ 304 (467) T protein:vir:31 225 LTEKGREEMRNLIEDNNEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKV 304 (467) T ss_pred CCHHHHHHHHHHHHhhhcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHH Confidence 8999999999999987653 5788899998877665543 3678999999999999999999 Q ss_pred hcCChhhcccccCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeEEE--eechhhcCHHHHHHHHHH Q lcl|Aclame:pro 384 YQVSPQDVGILEGSNK-ATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-NEKDIKLW--FKEDDLEKERDWWNIIQG 459 (945) Q Consensus 384 FGVPP~lLG~~e~gT~-SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-~~~g~~f~--fd~~~l~D~kerae~~~~ 459 (945) |||||++||+.+++++ +|+|++...|+++||+|++++|++++|++|++.. ...+++++ ++.....|.++++++++. T Consensus 305 fgVpp~~lG~~~~~~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~i~f~~~~l~~~d~~~~~~~~~~ 384 (467) T protein:vir:31 305 HDVPPVIAGVVESGAFSTDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAPDWTIEFELAKPDTKLQDVEIASQRV 384 (467) T ss_pred hCCCHHHcccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceEEEecchhhccCHHHHHHHHHH Confidence 9999999999887776 7899999999999999999999999999987753 33444444 455666799999999999 Q ss_pred HHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhHHH Q lcl|Aclame:pro 460 QLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNA 539 (945) Q Consensus 460 ~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a 539 (945) ++++|++|+||+|+++|+||+++++.. +. .++... ...+..+... .+.+.+.+..+. +++.-+ T Consensus 385 ~~~~G~~T~NE~R~~~Gl~pi~d~~~~--~~--~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~-------~~~~~~- 447 (467) T protein:vir:31 385 QAMQGLLTVNELRDEFGFEPFPEEHVY--GG--ETLVAE---VTGGSGPGGG--IGDQIEQLVEDR-------ADEIID- 447 (467) T ss_pred HHhCCCcCHHHHHHHhCCCCCCccccc--CC--cccccc---cccccCCCCc--ccCcCCCCCCCc-------ccchHh- Confidence 999999999999999999999654321 11 111100 0000011000 000000000000 000000 Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhcc Q lcl|Aclame:pro 540 GLEVLRNLFKSLDANASENLKQVIEL 565 (945) Q Consensus 540 ~~~~lr~~~k~l~a~~~~~~~~~~dl 565 (945) .+. ..+..+..-.+..-++. T Consensus 448 ---~~~---~~~~~~~~~~~~~~~~~ 467 (467) T protein:vir:31 448 ---SYQ---ADLETEQLIEIGANADS 467 (467) T ss_pred ---hhh---hccccchhhhhccccCC Confidence 000 00000000000000011 No 65 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=100.00 E-value=1.1e-74 Score=426.14 Aligned_cols=374 Identities=11% Similarity=0.078 Sum_probs=274.2 Q ss_pred hccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHH Q lcl|Aclame:pro 53 AWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVS 132 (945) Q Consensus 53 ~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~ 132 (945) -|.+ || |+++++++.. .+ +.+. .+.. .+.... ..+.+.+ ..+..++.+.|+++++|++||+ T Consensus 1 m~m~-------~~--~~~~~~~~~~-~~--~~~~-~~~~-~~~~~~--~~~~~~~---~~g~~v~~~~al~~~~v~~~v~ 61 (392) T protein:vir:74 1 MILP-------IL--NFINQTNDPP-EA--GSVQ-SYFP-DGNDAQ--IMESLLG---DNNEWVSARAALRNSDLFSIIL 61 (392) T ss_pred Ccch-------hh--hhhhcccCcc-cc--cccc-cccc-cCchhh--hhhhccC---CCCcccchhhhhcchHHHHHHH Confidence 2222 22 2322222211 11 1111 0000 011011 1112221 1234567888999999999999 Q ss_pred HHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCe Q lcl|Aclame:pro 133 EIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGN 212 (945) Q Consensus 133 iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~ 212 (945) +||++||++|+++|++.. ..|+.+||++||+++||+. ++.+++++|++|+++.|+..|+ T Consensus 62 ~ia~~ia~lp~~~~~~~~-----------------~~l~~~PN~~~t~~~f~~~----~~~~lll~Gna~~~i~r~~~G~ 120 (392) T protein:vir:74 62 QLSSDLAIVKINAEKKKN-----------------QGIIDNPSTNANKHGFWQS----MFAQLLLGGEAFAYRWRNANGA 120 (392) T ss_pred HHHHhhccCceeeccchh-----------------hhhhhhcCCCCCHHHHHHH----HHHHhhhcCCEEEEEEECCCCc Confidence 999999999999986432 2477899999999998766 5678899999999999999999 Q ss_pred EEEEEEcCCceeEEEEcCCCceEEEEEEeeC---CceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 LVAITPVDGTTIKPILSEDTGIVVGYVQEVD---GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFI 289 (945) Q Consensus 213 pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~d---G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aa 289 (945) +++|+||+|++|++..+.+|+..+ |.+..+ ++....++++||||++.+. +++ ..+|+|||.+++++++.+.++ T Consensus 121 ~~~L~~i~~~~v~v~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~evih~~~~~-~~~--~~~G~s~i~~~~~~i~~~~~~ 196 (392) T protein:vir:74 121 DMKWEYLRPSQVNTYYFEYENGMY-YNITFDDPKIEPILQAPQSDLIHMKLLS-IDG--GKTGISPLYSLRRESKIQRAS 196 (392) T ss_pred EEEEEEEcCceeEEEEcCCCceEE-EEEEecCCccceeEEEcCccEEEecCCC-CCC--ccccccHHHHHHHHHHHHHHH Confidence 999999999999999988776543 322222 2345679999999998544 332 237999999999999999999 Q ss_pred HHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHH Q lcl|Aclame:pro 290 DKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQ 368 (945) Q Consensus 290 ee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~Q 368 (945) ++++.++|. ||++|+|+|+++.. ...+++++++ |.+.+.| .|+|+++|+++|++|++++++++|+| T Consensus 197 ~~~~~~~f~-ng~~p~~il~~~~~--------~~~~~~~~~~----~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q 263 (392) T protein:vir:74 197 DRLTISSLN-SSLNVPGVLTVKGG--------GLLSDKDKAS----RSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQ 263 (392) T ss_pred HHHHHHHHh-ccCCCceEEEeCCC--------CCchHHHHHH----HHHHHhccccCCCeeecCCCceEEEccCChhHHH Confidence 999999996 57789999998642 1233444444 4444444 68899999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhc Q lcl|Aclame:pro 369 FKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLE 448 (945) Q Consensus 369 flE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~ 448 (945) |+|++++++++||++|||||++||...+++ +.+++.++|++++|.|+++.|+++++++|.+. +++++...... T Consensus 264 ~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~--~~~e~~~~~~~~~l~p~~~~ie~~l~~~l~~~-----~~~~~~~~~~~ 336 (392) T protein:vir:74 264 LLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ--SSIQQISGMYASALNRYLRPAISELEYKLSDH-----ISVNMRPAIDP 336 (392) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhCCCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----hcccchhhhcC Confidence 999999999999999999999999765433 44567889999999999999999999998764 34555555566 Q ss_pred CHHHHHHHHHHHHhCCCcCHHHHHHHHh--------------CCCCCCccccccccccccccccchhhccCCCCcccccc Q lcl|Aclame:pro 449 KERDWWNIIQGQLNTGFRSINEARMEKG--------------LEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQA 514 (945) Q Consensus 449 D~kerae~~~~~v~~GimT~NEaRe~lG--------------lpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~ 514 (945) |..++++.+..++++|++|+||+|+++. +||++|||.- T Consensus 337 d~~~~~~~~~~l~~~g~~t~near~~~~~~g~~pne~r~~enl~~~~~Gd~~---------------------------- 388 (392) T protein:vir:74 337 LGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSN---------------------------- 388 (392) T ss_pred CHHHHHHHHHHHHhCCCcCHHHHHHHHHhCCCCccccchhcCCCCCCCCCCC---------------------------- Confidence 8889999999999999999999999873 2222222210 Q ss_pred cCCCCCCCC Q lcl|Aclame:pro 515 MADQPSQQG 523 (945) Q Consensus 515 ~~d~~~~~~ 523 (945) .+. + T Consensus 389 ---~p~--p 392 (392) T protein:vir:74 389 ---EPV--P 392 (392) T ss_pred ---CCC--C Confidence 000 0 No 66 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=100.00 E-value=8.6e-75 Score=426.63 Aligned_cols=356 Identities=12% Similarity=0.099 Sum_probs=275.0 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-|| |+ |++.....+. + +.......+ .......++.+.|+++++||+||++||++||++ T Consensus 1 M~~~--~~-f~~r~~~~~~---------~--------~~~~~~~~~-~~~~~~~v~~~~al~~~av~~cv~~ia~~ia~~ 59 (359) T protein:vir:10 1 MSIL--NP-FERRSSITPN---------N--------YYPFMVQNG-SIVPNSLVDATEALKNSDLYAVTSLISSDIAGT 59 (359) T ss_pred Cccc--ch-hhccccCCCC---------c--------chhhhhccc-cccCCcccCHHHhhcchHHHHHHHHHHHhhhcC Confidence 2222 11 2222111111 0 000000011 111223466778999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) |+. .+|.+..|+.+|||+||+++||+. ++.+++++||+|++++|+.+|+|.+|+|++| T Consensus 60 p~~------------------~~~~~~~L~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~ 117 (359) T protein:vir:10 60 RFI------------------GNQVFTSVLNNPSHLTNAFSFWQT----AILNLLLNGNVFLAILKGDNSLMKELRLIPS 117 (359) T ss_pred ccc------------------cchHHHHHhhcccccCCHHHHHHH----HHHhccccCceEEEEEECCCCeEEEEEEeCC Confidence 983 234566677799999999999876 5677789999999999999999999999999 Q ss_pred ceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCc-cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVY-MYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~-~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) ++|++..++ +..+|.|. ..+++....++++||||++.+...... .+.+|+||+..++++++.+.++++++.++|. | T Consensus 118 ~~v~i~~~~-~~~~y~~~-~~~~~~~~~~~~~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~-n 194 (359) T protein:vir:10 118 NAITIDLTD-DTLTYEVN-QFDDYPSAKYNASEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLK-G 194 (359) T ss_pred ceEEEEEcC-CeEEEEEE-ecCCceEEEEcccceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHh-c Confidence 999997764 44554443 344566788999999999876433222 2347999999999999999999999999996 5 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKI 380 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeI 380 (945) |++|+|||+++. +.++++++++++++|++.++|+|+|+++||++|++|+++++++.|+||+|++++++++| T Consensus 195 g~~~~gil~~~~---------~~l~~e~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~I 265 (359) T protein:vir:10 195 ALNPTSVVKVPQ---------GTLSSEAKDSIRKEFEKANGGNNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQI 265 (359) T ss_pred cCCcceEEEeCC---------CCCCHHHHHHHHHHHHHHhCccccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHH Confidence 778999998753 35899999999999999998899999999999999999999999999999999999999 Q ss_pred HHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHH Q lcl|Aclame:pro 381 CAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQ 458 (945) Q Consensus 381 A~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~ 458 (945) |++|||||++||..++ +++++++++...|+..+|.||...+++.+++.+.... +..+++ |...+...+. T Consensus 266 a~~fgVPp~~lg~~~~~~~~~~~~e~~~~~~l~~~l~p~~~~l~~~l~~~~~~~~---~~~~~~------d~~~~~~~~~ 336 (359) T protein:vir:10 266 AKAFGVSDSYLNGTGDQQSSLDQIKDLYVNALNRFIEPLISELRIKCDSSIGVDM---SPITDY------SNSVFKADIL 336 (359) T ss_pred HHHhCCCHHHhCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc---hhhhhc------CHHHHHHHHH Confidence 9999999999987544 4667788888888888888888888887776543221 122333 3344456677 Q ss_pred HHHhCCCcCHHHHHHHHhCCCCC Q lcl|Aclame:pro 459 GQLNTGFRSINEARMEKGLEPVP 481 (945) Q Consensus 459 ~~v~~GimT~NEaRe~lGlpPve 481 (945) +++++|++|+||+|+++|++|+= T Consensus 337 ~~~~~G~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 337 NWVKEGIIEPTEAKTLLESKGII 359 (359) T ss_pred HHHhCCCcCHHHHHHHhCCCCCC Confidence 89999999999999999999986 No 67 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=100.00 E-value=4.6e-74 Score=422.65 Aligned_cols=383 Identities=13% Similarity=0.110 Sum_probs=290.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .=+|++. ++++. .+...+... +++.+ ..+ .+.+. .+..++.+.++++|+|++||++||++||++ T Consensus 1 M~~f~~~---~~~~~-~~~~~~~~~--~~~~~---~~~--~~~~~-----~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~ 64 (386) T protein:vir:48 1 MPIFNIT---NLATE-SPPISQGGF--FDITD---PDF--LSTLN-----GSEWVSAESALRNSDLFSIINQLSNDLATV 64 (386) T ss_pred Ccccccc---ccccc-ccccccccc--ccccc---chh--ccccc-----CCceechhhhhcchHHHHHHHHHHHhhccC Confidence 4445331 11111 111111111 11110 011 11111 123567888999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) |+++|+ |....|+.+||++||+++||+. ++.++++.|++|+++.|+..|++++|+|++| T Consensus 65 p~~~~~-----------------~~~~~l~~~pN~~~t~~~f~~~----~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~ 123 (386) T protein:vir:48 65 KLTASR-----------------KQLQGIIDNPSNNANRFNFYQS----IFAQMLLGGEAFAYRWRNENGRDMKWEYLRP 123 (386) T ss_pred ceeecc-----------------chhHHHhhcCCCCCCHHHHHHH----HHHHhhhcCcEEEEEEECCCCcEEEEEEecC Confidence 999984 2345678899999999998765 6778899999999999999999999999999 Q ss_pred ceeEEEEcCCCceEEEEEEeeCC---ceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVDG---AIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYR 298 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~dG---~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~ 298 (945) ++|++..+.+|+..+ |.+..++ +....++++||||++.+. +++ ..+|+||+..++++++.+.++++++.++|. T Consensus 124 ~~v~v~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~evih~~~~~-~~~--~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ 199 (386) T protein:vir:48 124 SQVSFNRLDNKDGIY-YNITFDDPRIPPKQHVPQGDVLHFKLLS-VDG--GLTSVSPLMALSRELNIQKASDKLTLNSLK 199 (386) T ss_pred ceeEEEEcCCCceEE-EEEEecCccccceeEecCccEEEecCCC-CCC--ceeeccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 999999988876543 3333333 345678999999998543 333 237999999999999999999999999996 Q ss_pred hCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 299 KGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVAR 378 (945) Q Consensus 299 nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~e 378 (945) ||++|+|+|+.+ +.+++++.+++++.|.... .|+|+++++++|++|++++++++|+||+|+++++++ T Consensus 200 -ng~~~~~ii~~~----------~~~~~e~~~~~~~~~~~~~--~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~ 266 (386) T protein:vir:48 200 -NALNANGILKIK----------GGGLLDFKTKLSRSRQAMK--QMQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTG 266 (386) T ss_pred -ccCCcceEEEeC----------CCCCHHHHHHHHHHHHHhh--cCCCCceecCCCceEEEcCCChhHHHHHHHHHHHHH Confidence 577899999875 4578899999999997644 578999999999999999999999999999999999 Q ss_pred HHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHH Q lcl|Aclame:pro 379 KICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQ 458 (945) Q Consensus 379 eIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~ 458 (945) +||++|||||+++|. .++++|++++.++|++.||+|+++.||++++++|.+.. .+++......|...++..+. T Consensus 267 ~Ia~~fgVPp~~lg~--~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~-----~~~~~~~~~~d~~~~~~~~~ 339 (386) T protein:vir:48 267 QFAKVYGIPENVVGG--QGDQQSSLEMSLDLYNKAVSRYLRPFLSELSQKLSCDV-----DADILPAVDPTGSNSVSRIN 339 (386) T ss_pred HHHHHhCCCHHHhCC--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-----hcchhhhhccChHHHHHHHH Confidence 999999999999985 46788999999999999999999999999999997643 23333333456778888899 Q ss_pred HHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 459 GQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 459 ~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +++++|++|+||+|+.+|++|++++|.+.....+.++ ..+++ .++++ T Consensus 340 ~l~~~g~~t~nE~r~~lg~~~~~~~~~~~~~~~~~~~-----------------~~gGd--------~~~~~ 386 (386) T protein:vir:48 340 SMVKSGTLAQNQGLYILQQAEILPKELPEGENPNKTT-----------------LKGGE--------INGED 386 (386) T ss_pred HHHhCCCcCHHHHHHHhhcCCCCCccchhhcCCCCCc-----------------cCCCC--------CCCCC Confidence 9999999999999999999999887754321101000 00111 11111 No 68 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=100.00 E-value=2.1e-73 Score=419.05 Aligned_cols=505 Identities=16% Similarity=0.085 Sum_probs=310.2 Q ss_pred hccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHH Q lcl|Aclame:pro 53 AWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVS 132 (945) Q Consensus 53 ~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~ 132 (945) -+|+ -+||.- +.+++.+....-..++ +.......+. ..|-. ...+.+.+..+++|++||+ T Consensus 1 ~~~~--~~~i~s------~~~~~~i~~~~~~s~~----~~~~~~~~~~-----~pp~~---~~~la~l~~~n~~v~scI~ 60 (542) T protein:vir:41 1 MFNY--HLSIRS------LEKYKAIKREEVESQA----LGETRFEEYV-----EPKVN---PLVLLSLLQVNPYHASACS 60 (542) T ss_pred Cccc--cccccc------cccchhhhhccccccc----cccccCCccc-----cCCCC---HHHHHHHHhhcHHHHHHHH Confidence 0110 012221 1123322211111111 0000111111 11111 2234566677899999999 Q ss_pred HHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCe Q lcl|Aclame:pro 133 EIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGN 212 (945) Q Consensus 133 iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~ 212 (945) +||++||++||++++... +.+..+ .||++||+++||+. ++.+++++|++|+++.|+..|+ T Consensus 61 ~ia~~IA~l~~~~~~~~~--------------~~l~~~--lpN~~~s~~~f~~~----~v~~lll~Gnayi~i~rd~~G~ 120 (542) T protein:vir:41 61 IKANDIIRTGYILEGDDE--------------GVVDEF--IRACKPSFEYVLLR----ALEDLQVFNYCTLEVVRDDRGD 120 (542) T ss_pred HHHHHHhhCceeeecccc--------------hhhhhh--cCCCCCCHHHHHHH----HHHHHhhcCCeEEEEEEcCCCc Confidence 999999999999864211 112222 59999999998765 5778899999999999999999 Q ss_pred EEEEEEcCCceeEEEEcCCCceEE----------EEEE-----eeCCceeeeecccceeeeeeccCCCCccCcccccHHH Q lcl|Aclame:pro 213 LVAITPVDGTTIKPILSEDTGIVV----------GYVQ-----EVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIE 277 (945) Q Consensus 213 pveL~pLdPs~Vtv~~d~dG~~~~----------~Yv~-----~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~ 277 (945) +++|+||+|.+|++..+.++.... .|.+ ...|.....++++||||++.+.+.+ +.+|+|||. T Consensus 121 ~~~L~~l~~~~v~v~~d~~~~~~~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~---~~~Glspi~ 197 (542) T protein:vir:41 121 PIRFEYIPSHTIRVHKDGSRYRQTWDGVNITHFKDYRYEGEINPETGEDQDSVGANELVFIHIPSPVC---SYYGVPRYV 197 (542) T ss_pred EEEEEEEcCcceEEEEcCCeeEeeecCCcceeEEeecccccccccccccccccCcccEEEecCCCCCC---CcccccHHH Confidence 999999999999998765532211 1111 1122234457889999997554322 347999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC--cccCcccccC--- Q lcl|Aclame:pro 278 ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG--DYTQVPILSG--- 352 (945) Q Consensus 278 aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG--~Nagkp~VL~--- 352 (945) .++.++..+.++++++.++|. ||++|+|||++++........+..+++++.+++++.|++.+.| +|+|+++|++ T Consensus 198 ~~~~~i~~~~~~~~~~~~~f~-Ng~~p~gIL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~ 276 (542) T protein:vir:41 198 SAAPAILAMQKIDEYNYAFFD-NYTIPSYVITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPG 276 (542) T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccCCccEEEEeCCccccccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccC Confidence 999999999999999999996 5788999999987766555667789999999999999999876 5889999984 Q ss_pred ---CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 353 ---GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSN--KATAEVMASLTKAKGLEPLMATISKGFDE 427 (945) Q Consensus 353 ---~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT--~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~ 427 (945) +|++|+++++++.|+||++++++++++||++|||||++||+.++++ ++|+|++...|+++||+|++++||++||+ T Consensus 277 ~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~ 356 (542) T protein:vir:41 277 GDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTD 356 (542) T ss_pred CcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 7999999999999999999999999999999999999999987764 58999999999999999999999999999 Q ss_pred hhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCC Q lcl|Aclame:pro 428 VVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAM 507 (945) Q Consensus 428 kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~ 507 (945) +|.+..+. +++|+|+...+... ++.+.+..++++|++|+||+|+. ++++++||.++....+........ .+.+.. T Consensus 357 ~L~~~~~~-~~~~~f~~~~ll~~-d~~~~~~~~v~~GilT~NE~Re~--L~g~~pgdd~~l~p~~~~~~~~~~-~~~n~~ 431 (542) T protein:vir:41 357 FFQVKFNP-KTRFKFNDETLLES-DSVRNCALLVQSGVLTPAEARER--LFGLDGGPDIFMVPSKGAAKSVKR-QERNYE 431 (542) T ss_pred hcccccCC-ceEEEecchhhcch-HHHHHHHHHHhCCCCCHHHHHHh--hCCCCCCCcccccccccccccccc-CCcCCC Confidence 98876654 67889987776643 35566778999999999999974 455666666654443333222111 111111 Q ss_pred CcccccccC----CCCCCCCCCCCCCccccch-hHHHHHHHHHHHHhhhhhhhhHHHHHhhccCCcccccc-------ch Q lcl|Aclame:pro 508 PPQLAQAMA----DQPSQQGGGVDENSSVPSE-QKNAGLEVLRNLFKSLDANASENLKQVIELTNDDNYLK-------EK 575 (945) Q Consensus 508 ~~~~~~~~~----d~~~~~~g~~dd~e~~~se-~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~-------e~ 575 (945) +++..+... ..+..+...++..++..+. ++++....++.++.....++.-....+.+.+-.+.+.. -- T Consensus 432 ~~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (542) T protein:vir:41 432 KNQIREIRKIYAKYRPRFNEIISSKLSAEEKKKKIDESLAEFRAEAYEAGKKMLIIGGDMGSMSALNQGVSVIPSKPLNL 511 (542) T ss_pred CCchhhhhhcccccCccccccccccccchhhcccccchhhhhHHhHHhcCceEEEeecCchhhhhhhccceeccCCCcCh Confidence 111110000 0000111111111111111 11111122222333322222111111111111111110 01 Q ss_pred HHHHHHHHhhhhHHHHHhhhhhhhcccccCCCcccccchhhHHHHHHhhccchhhhhhhh Q lcl|Aclame:pro 576 ELLTRVLKSVGLDSVSEFIENNSQTDVEVSAKDILSFKYNSLVEDETIYATEKDIVLRLL 635 (945) Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (945) ++|...|+-+-.+-+-. .|.|- =|-|-.|-| T Consensus 512 ~~~~~~~~~~~~~~~~~----------------------------~~~~~-~~~~~~~~~ 542 (542) T protein:vir:41 512 ERYEELLEASVEDMIGR----------------------------IRHYL-YKVIGWREL 542 (542) T ss_pred HHHHHHHHhhHHHHHHH----------------------------HHHHH-HHHhhhccC Confidence 22333332221111000 01110 011111211 No 69 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=100.00 E-value=3.1e-73 Score=418.10 Aligned_cols=385 Identities=12% Similarity=0.101 Sum_probs=273.3 Q ss_pred eeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHh Q lcl|Aclame:pro 58 VVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKK 137 (945) Q Consensus 58 ~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~ 137 (945) ..-+ || ++++++.+.. +. ..+...+. .+....+ .+...+ ..+..++.+.||++++|++||++||++ T Consensus 1 m~m~--~f--~~~~~~~~~~-~~--~~~~~~~~--~~~~~~~--~~~~~~---~~~~~v~~~~al~~~~v~~~i~~ia~~ 66 (392) T protein:vir:10 1 MILP--IL--NFINQTNDPP-EV--GSVQSYFP--DGNDAQI--MESLLG---DNNEWVSARAALRNSDLFSIILQLSSD 66 (392) T ss_pred Ccch--hh--hhhhcccccc-cc--cccccccc--cCchhhh--hhhhcC---CCCceechHHhhccHHHHHHHHHHHHh Confidence 1111 22 2333322211 11 11111111 1111111 111111 122356788899999999999999999 Q ss_pred hccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEE Q lcl|Aclame:pro 138 LTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAIT 217 (945) Q Consensus 138 IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~ 217 (945) ||++|+++|++.. ..|+.+||++||+++||+. ++.+++++|++|+++.|+..|++++|+ T Consensus 67 ia~lp~~~~~~~~-----------------~~l~~~PN~~~t~~~f~~~----~~~~lll~Gna~~~i~r~~~g~~~~L~ 125 (392) T protein:vir:10 67 LAIVKINAEKKKN-----------------QGIIDNPSTNANKHGFWQS----MFAQLLLGGEAFAYRWRNANGADMKWE 125 (392) T ss_pred hccCceeeccchh-----------------hhHhhcCCCCCCHHHHHHH----HHHHhhhcCcEEEEEEECCCCcEEEEE Confidence 9999999985432 2477899999999998766 577889999999999999999999999 Q ss_pred EcCCceeEEEEcCCCceEEEEEEeeC---CceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 218 PVDGTTIKPILSEDTGIVVGYVQEVD---GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNL 294 (945) Q Consensus 218 pLdPs~Vtv~~d~dG~~~~~Yv~~~d---G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a 294 (945) |++|++|++..+.+|+..+ |.+..+ ++....++++||||++.+. +++ ..+|+||+.++++.++.+.++++++. T Consensus 126 ~l~~~~v~~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~eiih~~~~~-~~~--~~~G~s~i~~~~~~i~~~~~~~~~~~ 201 (392) T protein:vir:10 126 YLRPSQVNTYYFEYENGMY-YNITFDDPKIEPILQAPQSDLIHMKLLS-IDG--GKTGISPLYSLRRESKIQRASDRLTI 201 (392) T ss_pred EEcCceeEEEEcCCCceEE-EEEEecCcccceeEEEccccEEEecCCC-CCC--ccccccHHHHHHHHHHHHHHHHHHHH Confidence 9999999999988776543 332222 2345679999999998654 332 23799999999999999999999999 Q ss_pred HHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHH Q lcl|Aclame:pro 295 DYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELA 373 (945) Q Consensus 295 ~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~r 373 (945) ++|. ||++|+|+|++++. ...++++++ .|.+.+.| .|+|+++++++|++|++++++++|+||++++ T Consensus 202 ~~f~-ng~~p~gil~~~~~--------~~~~~~~~~----~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~ 268 (392) T protein:vir:10 202 SSLN-SSLNVPGVLTVKGG--------GLLSDKDKA----SRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQT 268 (392) T ss_pred HHHh-ccCCCceEEEeCCC--------CCchHHHHH----HHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHH Confidence 9996 57889999998642 123444444 44444444 6889999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHH Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDW 453 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~ker 453 (945) ++++++||++|||||++||+...+ ++.+++.++|+++||.|+++.|+++++++|.+. ++++.......|..++ T Consensus 269 ~~~~~~Ia~~fgVpp~~lg~~~~~--~~~~~~~~~f~~~~l~P~~~~ie~~l~~~L~~~-----~~~d~~~~~~~d~~~~ 341 (392) T protein:vir:10 269 DWTSKQYAKVYGLPDSYIGGQGDQ--QSSIQQISGMYASALNRYLRPAISELEYKLSDH-----ISVNMRPAIDPLGDNY 341 (392) T ss_pred HHHHHHHHHHhCCCHHHhCCCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccccchhhhccCHHHH Confidence 999999999999999999975433 345677889999999999999999999998764 3344444455678899 Q ss_pred HHHHHHHHhCCCcCHHHHHHHH---hCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCC Q lcl|Aclame:pro 454 WNIIQGQLNTGFRSINEARMEK---GLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQG 523 (945) Q Consensus 454 ae~~~~~v~~GimT~NEaRe~l---GlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~ 523 (945) ++.+.+++++|++|+||+|+++ |+.|.+- +. ..+.++.. ..+ ++.+. + T Consensus 342 ~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e~---r~--~e~l~~~~-----~Gd----------~~~p~--p 392 (392) T protein:vir:10 342 LSTISTATRWGALAENQATFVLQEAGYIPKDL---PA--PENTNKKT-----TGQ----------SNEPV--P 392 (392) T ss_pred HHHHHHHHhCCCcCHHHHHHHHHhcCCCcccc---ch--hcCCCCCC-----CCC----------CCCCC--C Confidence 9999999999999999999987 4433110 00 00011100 000 00000 0 No 70 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=100.00 E-value=3.1e-73 Score=418.10 Aligned_cols=385 Identities=12% Similarity=0.101 Sum_probs=273.3 Q ss_pred eeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHh Q lcl|Aclame:pro 58 VVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKK 137 (945) Q Consensus 58 ~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~ 137 (945) ..-+ || ++++++.+.. +. ..+...+. .+....+ .+...+ ..+..++.+.||++++|++||++||++ T Consensus 1 m~m~--~f--~~~~~~~~~~-~~--~~~~~~~~--~~~~~~~--~~~~~~---~~~~~v~~~~al~~~~v~~~i~~ia~~ 66 (392) T protein:vir:39 1 MILP--IL--NFINQTNDPP-EV--GSVQSYFP--DGNDAQI--MESLLG---DNNEWVSARAALRNSDLFSIILQLSSD 66 (392) T ss_pred Ccch--hh--hhhhcccccc-cc--cccccccc--cCchhhh--hhhhcC---CCCceechHHhhccHHHHHHHHHHHHh Confidence 1111 22 2333322211 11 11111111 1111111 111111 122356788899999999999999999 Q ss_pred hccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEE Q lcl|Aclame:pro 138 LTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAIT 217 (945) Q Consensus 138 IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~ 217 (945) ||++|+++|++.. ..|+.+||++||+++||+. ++.+++++|++|+++.|+..|++++|+ T Consensus 67 ia~lp~~~~~~~~-----------------~~l~~~PN~~~t~~~f~~~----~~~~lll~Gna~~~i~r~~~g~~~~L~ 125 (392) T protein:vir:39 67 LAIVKINAEKKKN-----------------QGIIDNPSTNANKHGFWQS----MFAQLLLGGEAFAYRWRNANGADMKWE 125 (392) T ss_pred hccCceeeccchh-----------------hhHhhcCCCCCCHHHHHHH----HHHHhhhcCcEEEEEEECCCCcEEEEE Confidence 9999999985432 2477899999999998766 577889999999999999999999999 Q ss_pred EcCCceeEEEEcCCCceEEEEEEeeC---CceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 218 PVDGTTIKPILSEDTGIVVGYVQEVD---GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNL 294 (945) Q Consensus 218 pLdPs~Vtv~~d~dG~~~~~Yv~~~d---G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a 294 (945) |++|++|++..+.+|+..+ |.+..+ ++....++++||||++.+. +++ ..+|+||+.++++.++.+.++++++. T Consensus 126 ~l~~~~v~~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~eiih~~~~~-~~~--~~~G~s~i~~~~~~i~~~~~~~~~~~ 201 (392) T protein:vir:39 126 YLRPSQVNTYYFEYENGMY-YNITFDDPKIEPILQAPQSDLIHMKLLS-IDG--GKTGISPLYSLRRESKIQRASDRLTI 201 (392) T ss_pred EEcCceeEEEEcCCCceEE-EEEEecCcccceeEEEccccEEEecCCC-CCC--ccccccHHHHHHHHHHHHHHHHHHHH Confidence 9999999999988776543 332222 2345679999999998654 332 23799999999999999999999999 Q ss_pred HHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHH Q lcl|Aclame:pro 295 DYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELA 373 (945) Q Consensus 295 ~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~r 373 (945) ++|. ||++|+|+|++++. ...++++++ .|.+.+.| .|+|+++++++|++|++++++++|+||++++ T Consensus 202 ~~f~-ng~~p~gil~~~~~--------~~~~~~~~~----~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~ 268 (392) T protein:vir:39 202 SSLN-SSLNVPGVLTVKGG--------GLLSDKDKA----SRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQT 268 (392) T ss_pred HHHh-ccCCCceEEEeCCC--------CCchHHHHH----HHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHH Confidence 9996 57889999998642 123444444 44444444 6889999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHH Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDW 453 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~ker 453 (945) ++++++||++|||||++||+...+ ++.+++.++|+++||.|+++.|+++++++|.+. ++++.......|..++ T Consensus 269 ~~~~~~Ia~~fgVpp~~lg~~~~~--~~~~~~~~~f~~~~l~P~~~~ie~~l~~~L~~~-----~~~d~~~~~~~d~~~~ 341 (392) T protein:vir:39 269 DWTSKQYAKVYGLPDSYIGGQGDQ--QSSIQQISGMYASALNRYLRPAISELEYKLSDH-----ISVNMRPAIDPLGDNY 341 (392) T ss_pred HHHHHHHHHHhCCCHHHhCCCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccccchhhhccCHHHH Confidence 999999999999999999975433 345677889999999999999999999998764 3344444455678899 Q ss_pred HHHHHHHHhCCCcCHHHHHHHH---hCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCC Q lcl|Aclame:pro 454 WNIIQGQLNTGFRSINEARMEK---GLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQG 523 (945) Q Consensus 454 ae~~~~~v~~GimT~NEaRe~l---GlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~ 523 (945) ++.+.+++++|++|+||+|+++ |+.|.+- +. ..+.++.. ..+ ++.+. + T Consensus 342 ~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e~---r~--~e~l~~~~-----~Gd----------~~~p~--p 392 (392) T protein:vir:39 342 LSTISTATRWGALAENQATFVLQEAGYIPKDL---PA--PENTNKKT-----TGQ----------SNEPV--P 392 (392) T ss_pred HHHHHHHHhCCCcCHHHHHHHHHhcCCCcccc---ch--hcCCCCCC-----CCC----------CCCCC--C Confidence 9999999999999999999987 4433110 00 00011100 000 00000 0 No 71 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=100.00 E-value=1.2e-72 Score=414.95 Aligned_cols=384 Identities=14% Similarity=0.135 Sum_probs=279.3 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-||.+ ||++.+.... + ..|. ....++...++++++|++||++||++||++ T Consensus 1 Mg~f~~--lf~~~~~~~~-------------------~---~~~~-----~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~ 51 (395) T protein:vir:10 1 MSILEK--IFKTRKDITY-------------------M---LDLD-----MIEDLSQQAYVKRLAIDSCIEFVARAVAQS 51 (395) T ss_pred Cchhhh--hhccCccccc-------------------c---ccch-----hccccchhhhhhhHHHHHHHHHHHHhhccc Confidence 333332 4544322100 0 0011 123566778899999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|+.. ....|+++++|. +|||+||+++||+.+ +.++++.|++++++.++. +++|++ T Consensus 52 p~~~~~~~-----------~~~~~~~~~ll~~~PN~~~t~~~f~~~~----~~~lll~g~~~~~~~~~~-----~~~~~~ 111 (395) T protein:vir:10 52 HFKVLEGN-----------RIQKNDVYYKLNIKPNTDLSSDSFWQQV----IYKLIYDNEVLIVVSDSK-----ELLIAD 111 (395) T ss_pred eeEeccCC-----------ccccchHHHHHHhccCcCCCHHHHHHHH----HHHHhhCCceEEEEecCC-----CeEecC Confidence 99999632 234689999886 899999999998764 566678888776654443 256666 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) +..+++....+. .+ .++...+++....++++||||++++.+.+. .+|.||+..++.+++.+.+ .|.+| T Consensus 112 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~evih~~~~~~~~~---~~G~spi~~~~~~~~~~~~-------~~~~~ 179 (395) T protein:vir:10 112 SFYREEYALYDD-IF-KDVTVKDYTYQRTFTMQEVIYLKYNNNKVT---HFVESLFEDYGKIFGRMIG-------AQLKN 179 (395) T ss_pred CccceeEeecCc-ce-eEEEEcCceeeeeeccccEEEEccCCCCcc---cccchHHHHHHHHHHHHHH-------HHHhc Confidence 666655443332 22 233334445567899999999987655432 4799999999888876543 34455 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcc--cccCCCceeeeccCChhhH-----HHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVP--ILSGGKFTWIDFKGKRRDM-----QFKELA 373 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp--~VL~~G~k~~pLs~sp~D~-----QflE~r 373 (945) | .|+|+|..+. ..+++++++++++.|++.++|.+++++ +++++|++|+++++++.++ ||+|++ T Consensus 180 ~-~~~gii~~~~---------~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~ 249 (395) T protein:vir:10 180 Y-QIRGILKSAS---------SAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELM 249 (395) T ss_pred C-CCceEEEeCC---------CCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHH Confidence 5 5677877653 347899999999999999988665554 4479999999999988775 999999 Q ss_pred HHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeEEEeechhhcCHHH Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-NEKDIKLWFKEDDLEKERD 452 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-~~~g~~f~fd~~~l~D~ke 452 (945) ++++++||++|||||++|| ++++|.|++..+|+++||+|++.+||+++|++|++.. ...+++|+++.....|.++ T Consensus 250 ~~~~~~Ia~~f~VPp~~l~----~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~ 325 (395) T protein:vir:10 250 RDAIKNVALMIGIPPGLIY----GETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQ 325 (395) T ss_pred HHHHHHHHHHhCCCHHHhc----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhhcccceecchhhhccCHHH Confidence 9999999999999999996 6889999999999999999999999999999887643 3456788888888889999 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHHhCCCCCCc--cccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 453 WWNIIQGQLNTGFRSINEARMEKGLEPVPWG--DVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 453 rae~~~~~v~~GimT~NEaRe~lGlpPveGG--D~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +++++.+++++|++|+||+|+++|+||++|| |+++++.+..+.......... +. .....++..+++. T Consensus 326 ~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~---~~--------~~~~kgg~~~~~g 394 (395) T protein:vir:10 326 YAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKE---KD--------ENTLKGGDEDESG 394 (395) T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCc---cc--------ccccCCCCCCCCC Confidence 9999999999999999999999999999887 889988876654321111100 00 0011111111111 Q ss_pred c Q lcl|Aclame:pro 531 S 531 (945) Q Consensus 531 ~ 531 (945) . T Consensus 395 ~ 395 (395) T protein:vir:10 395 D 395 (395) T ss_pred C Confidence 1 No 72 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=100.00 E-value=1.2e-72 Score=414.95 Aligned_cols=384 Identities=14% Similarity=0.135 Sum_probs=279.3 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-||.+ ||++.+.... + ..|. ....++...++++++|++||++||++||++ T Consensus 1 Mg~f~~--lf~~~~~~~~-------------------~---~~~~-----~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~ 51 (395) T protein:vir:10 1 MSILEK--IFKTRKDITY-------------------M---LDLD-----MIEDLSQQAYVKRLAIDSCIEFVARAVAQS 51 (395) T ss_pred Cchhhh--hhccCccccc-------------------c---ccch-----hccccchhhhhhhHHHHHHHHHHHHhhccc Confidence 333332 4544322100 0 0011 123566778899999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|+.. ....|+++++|. +|||+||+++||+.+ +.++++.|++++++.++. +++|++ T Consensus 52 p~~~~~~~-----------~~~~~~~~~ll~~~PN~~~t~~~f~~~~----~~~lll~g~~~~~~~~~~-----~~~~~~ 111 (395) T protein:vir:10 52 HFKVLEGN-----------RIQKNDVYYKLNIKPNTDLSSDSFWQQV----IYKLIYDNEVLIVVSDSK-----ELLIAD 111 (395) T ss_pred eeEeccCC-----------ccccchHHHHHHhccCcCCCHHHHHHHH----HHHHhhCCceEEEEecCC-----CeEecC Confidence 99999632 234689999886 899999999998764 566678888776654443 256666 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) +..+++....+. .+ .++...+++....++++||||++++.+.+. .+|.||+..++.+++.+.+ .|.+| T Consensus 112 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~evih~~~~~~~~~---~~G~spi~~~~~~~~~~~~-------~~~~~ 179 (395) T protein:vir:10 112 SFYREEYALYDD-IF-KDVTVKDYTYQRTFTMQEVIYLKYNNNKVT---HFVESLFEDYGKIFGRMIG-------AQLKN 179 (395) T ss_pred CccceeEeecCc-ce-eEEEEcCceeeeeeccccEEEEccCCCCcc---cccchHHHHHHHHHHHHHH-------HHHhc Confidence 666655443332 22 233334445567899999999987655432 4799999999888876543 34455 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcc--cccCCCceeeeccCChhhH-----HHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVP--ILSGGKFTWIDFKGKRRDM-----QFKELA 373 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp--~VL~~G~k~~pLs~sp~D~-----QflE~r 373 (945) | .|+|+|..+. ..+++++++++++.|++.++|.+++++ +++++|++|+++++++.++ ||+|++ T Consensus 180 ~-~~~gii~~~~---------~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~ 249 (395) T protein:vir:10 180 Y-QIRGILKSAS---------SAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELM 249 (395) T ss_pred C-CCceEEEeCC---------CCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHH Confidence 5 5677877653 347899999999999999988665554 4479999999999988775 999999 Q ss_pred HHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeEEEeechhhcCHHH Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-NEKDIKLWFKEDDLEKERD 452 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-~~~g~~f~fd~~~l~D~ke 452 (945) ++++++||++|||||++|| ++++|.|++..+|+++||+|++.+||+++|++|++.. ...+++|+++.....|.++ T Consensus 250 ~~~~~~Ia~~f~VPp~~l~----~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~ 325 (395) T protein:vir:10 250 RDAIKNVALMIGIPPGLIY----GETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQ 325 (395) T ss_pred HHHHHHHHHHhCCCHHHhc----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhhcccceecchhhhccCHHH Confidence 9999999999999999996 6889999999999999999999999999999887643 3456788888888889999 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHHhCCCCCCc--cccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 453 WWNIIQGQLNTGFRSINEARMEKGLEPVPWG--DVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 453 rae~~~~~v~~GimT~NEaRe~lGlpPveGG--D~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +++++.+++++|++|+||+|+++|+||++|| |+++++.+..+.......... +. .....++..+++. T Consensus 326 ~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~---~~--------~~~~kgg~~~~~g 394 (395) T protein:vir:10 326 YAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKE---KD--------ENTLKGGDEDESG 394 (395) T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCc---cc--------ccccCCCCCCCCC Confidence 9999999999999999999999999999887 889988876654321111100 00 0011111111111 Q ss_pred c Q lcl|Aclame:pro 531 S 531 (945) Q Consensus 531 ~ 531 (945) . T Consensus 395 ~ 395 (395) T protein:vir:10 395 D 395 (395) T ss_pred C Confidence 1 No 73 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=100.00 E-value=1.2e-72 Score=414.95 Aligned_cols=384 Identities=14% Similarity=0.135 Sum_probs=279.3 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-||.+ ||++.+.... + ..|. ....++...++++++|++||++||++||++ T Consensus 1 Mg~f~~--lf~~~~~~~~-------------------~---~~~~-----~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~ 51 (395) T protein:vir:95 1 MSILEK--IFKTRKDITY-------------------M---LDLD-----MIEDLSQQAYVKRLAIDSCIEFVARAVAQS 51 (395) T ss_pred Cchhhh--hhccCccccc-------------------c---ccch-----hccccchhhhhhhHHHHHHHHHHHHhhccc Confidence 333332 4544322100 0 0011 123566778899999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|+.. ....|+++++|. +|||+||+++||+.+ +.++++.|++++++.++. +++|++ T Consensus 52 p~~~~~~~-----------~~~~~~~~~ll~~~PN~~~t~~~f~~~~----~~~lll~g~~~~~~~~~~-----~~~~~~ 111 (395) T protein:vir:95 52 HFKVLEGN-----------RIQKNDVYYKLNIKPNTDLSSDSFWQQV----IYKLIYDNEVLIVVSDSK-----ELLIAD 111 (395) T ss_pred eeEeccCC-----------ccccchHHHHHHhccCcCCCHHHHHHHH----HHHHhhCCceEEEEecCC-----CeEecC Confidence 99999632 234689999886 899999999998764 566678888776654443 256666 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) +..+++....+. .+ .++...+++....++++||||++++.+.+. .+|.||+..++.+++.+.+ .|.+| T Consensus 112 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~evih~~~~~~~~~---~~G~spi~~~~~~~~~~~~-------~~~~~ 179 (395) T protein:vir:95 112 SFYREEYALYDD-IF-KDVTVKDYTYQRTFTMQEVIYLKYNNNKVT---HFVESLFEDYGKIFGRMIG-------AQLKN 179 (395) T ss_pred CccceeEeecCc-ce-eEEEEcCceeeeeeccccEEEEccCCCCcc---cccchHHHHHHHHHHHHHH-------HHHhc Confidence 666655443332 22 233334445567899999999987655432 4799999999888876543 34455 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcc--cccCCCceeeeccCChhhH-----HHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVP--ILSGGKFTWIDFKGKRRDM-----QFKELA 373 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp--~VL~~G~k~~pLs~sp~D~-----QflE~r 373 (945) | .|+|+|..+. ..+++++++++++.|++.++|.+++++ +++++|++|+++++++.++ ||+|++ T Consensus 180 ~-~~~gii~~~~---------~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~ 249 (395) T protein:vir:95 180 Y-QIRGILKSAS---------SAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELM 249 (395) T ss_pred C-CCceEEEeCC---------CCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHH Confidence 5 5677877653 347899999999999999988665554 4479999999999988775 999999 Q ss_pred HHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeEEEeechhhcCHHH Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-NEKDIKLWFKEDDLEKERD 452 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-~~~g~~f~fd~~~l~D~ke 452 (945) ++++++||++|||||++|| ++++|.|++..+|+++||+|++.+||+++|++|++.. ...+++|+++.....|.++ T Consensus 250 ~~~~~~Ia~~f~VPp~~l~----~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~ 325 (395) T protein:vir:95 250 RDAIKNVALMIGIPPGLIY----GETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQ 325 (395) T ss_pred HHHHHHHHHHhCCCHHHhc----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhhcccceecchhhhccCHHH Confidence 9999999999999999996 6889999999999999999999999999999887643 3456788888888889999 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHHhCCCCCCc--cccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 453 WWNIIQGQLNTGFRSINEARMEKGLEPVPWG--DVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 453 rae~~~~~v~~GimT~NEaRe~lGlpPveGG--D~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +++++.+++++|++|+||+|+++|+||++|| |+++++.+..+.......... +. .....++..+++. T Consensus 326 ~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~---~~--------~~~~kgg~~~~~g 394 (395) T protein:vir:95 326 YAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKE---KD--------ENTLKGGDEDESG 394 (395) T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCc---cc--------ccccCCCCCCCCC Confidence 9999999999999999999999999999887 889988876654321111100 00 0011111111111 Q ss_pred c Q lcl|Aclame:pro 531 S 531 (945) Q Consensus 531 ~ 531 (945) . T Consensus 395 ~ 395 (395) T protein:vir:95 395 D 395 (395) T ss_pred C Confidence 1 No 74 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=100.00 E-value=6.8e-73 Score=416.25 Aligned_cols=372 Identities=16% Similarity=0.168 Sum_probs=279.6 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) ..|| +++||+.+.. ... .+ . ....+++.+.|+++++|++||++||++||++ T Consensus 1 Mg~f--~~~f~~~~~~--------~~~---~~--------------~--~~~~~~~~~~a~~~~~v~~~i~~ia~~ia~~ 51 (385) T protein:vir:95 1 MGLF--DSVFKRHSEL--------SWM---YD--------------L--EFLQDKSKKAYLKQIALNTVVEMVARTISQS 51 (385) T ss_pred Cchh--hhhhccCccc--------ccc---cc--------------h--hhhhccchhhhhhhHHHHHHHHHHHHHHccc Confidence 3344 3466654321 000 00 0 0122455678899999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|++.. ...|++++||+ +||++||+++||+. ++.++++.|++|+++.++. |.+..++++. T Consensus 52 p~~~~~~~~-----------~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~l~l~Gna~i~~~~~~-~~~~~~~~~~ 115 (385) T protein:vir:95 52 EFRVMKNNT-----------KEKGTLYYLLNVRPNRNQNAVDFWQK----FIFKLIMDNEVLVVKNDEG-HFFVADDFEK 115 (385) T ss_pred ceeeeecCc-----------cccchHHHHHhcccCcCCCHHHHHHH----HHHHHhhcCceEEEEecCC-Ceeecccccc Confidence 999997432 13599999996 89999999998775 6778889999998776553 4556666666 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) +..+...... +..+...+++....++++||||++.+... + ..+|.||++.++..+..+.++.. | +| T Consensus 116 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~eiih~~~~~~~-~--~~~G~s~~~~~~~~i~~~~~~~~-----~-~~ 181 (385) T protein:vir:95 116 EDELGLYSHR-----FTNVLVNDFEFKRVFTMDDVIYLKYNNQK-L--DAFSLGLFEDYGEIFGRMIDLQM-----L-NN 181 (385) T ss_pred cccccccccc-----ceeeeecccceeeeeccccEEEecCCCCC-c--ccccchHHHHHHHHHHHHHHHHH-----h-cC Confidence 6665443221 12223334455677999999999865433 2 24799999999999887665432 2 23 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC--cccCcccccCCCceeeeccC------ChhhHHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG--DYTQVPILSGGKFTWIDFKG------KRRDMQFKEL 372 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG--~Nagkp~VL~~G~k~~pLs~------sp~D~QflE~ 372 (945) .|+|+++.+. ...+++++.+++++.|++.++| ++++.++++++|++|+++++ ++.|+||+|+ T Consensus 182 --~~~g~l~~~~--------~~~~~~e~~~~~~~~~~~~~~g~~~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~~~e~ 251 (385) T protein:vir:95 182 --QIRGILKVDA--------TKFYNKEKQKELQAYIDTLFDAFQNNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSELNEL 251 (385) T ss_pred --CCceEEEeCC--------ccCCCHHHHHHHHHHHHHHhhhhhhcCCceEEcCCCceeEeecccccccCCHHHHHHHHH Confidence 3678888753 2457999999999999999988 34566788999999999975 5679999999 Q ss_pred HHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEee--chhhcCH Q lcl|Aclame:pro 373 AEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFK--EDDLEKE 450 (945) Q Consensus 373 rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd--~~~l~D~ 450 (945) +++++++||++|||||++|| ++++|.|++..+|++.||+|++.+||++||++|++.....+++|+|+ .....|. T Consensus 252 ~~~~~~~Ia~~fgVpp~~l~----~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~D~ 327 (385) T protein:vir:95 252 KKTVLTDVARMIGVPPSLVL----GEMADLEKTIESYLQFCINPLLRKIEAELNSKFFYQDEYLNDDMHIKVVGIDKRDP 327 (385) T ss_pred HHHHHHHHHHHhCCCHHHhc----CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhcccceEEEechhhhccCH Confidence 99999999999999999995 68999999999999999999999999999998887655444455555 4455689 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhCCCC--CCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCC Q lcl|Aclame:pro 451 RDWWNIIQGQLNTGFRSINEARMEKGLEPV--PWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDE 528 (945) Q Consensus 451 kerae~~~~~v~~GimT~NEaRe~lGlpPv--eGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd 528 (945) +++++++++++++|+||+||+|+++|+||+ ||||.++++.+.++..+ . .++.+. T Consensus 328 ~~~~~~~~~~~~~g~lt~NE~R~~~g~~p~~~~~gd~~~~~~n~~~~~~-~-----------------------kgge~~ 383 (385) T protein:vir:95 328 LKLSEAIDKLVASGTFTRNQVRIMTGEEPADDPELDKFIITKNLQSADA-F-----------------------KGGESN 383 (385) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccceeccc-c-----------------------cCCCCC Confidence 999999999999999999999999999999 78999999887654321 0 000111 Q ss_pred Cc Q lcl|Aclame:pro 529 NS 530 (945) Q Consensus 529 ~e 530 (945) ++ T Consensus 384 ~e 385 (385) T protein:vir:95 384 EE 385 (385) T ss_pred CC Confidence 11 No 75 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=100.00 E-value=7.1e-72 Score=410.63 Aligned_cols=366 Identities=13% Similarity=0.074 Sum_probs=273.7 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-+|. +||++.+.. .. . ..+ . ...+++.+.++++++|++||++||++||++ T Consensus 1 Mg~f~--~l~~~~~~~--------~~-------~-------~~~---~--~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~~ 51 (376) T protein:vir:78 1 MGFFS--ELFKRNKEI--------EW-------M-------WDL---D--FLEDKTTKVYLKKMALNTCVKHIARTIAKS 51 (376) T ss_pred Cchhh--hhhccCCcc--------cc-------c-------cch---h--hccccchhhhhhhHHHHHHHHHHHHhhccc Confidence 55563 566654310 00 0 000 0 123456778899999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|+.. ...+||++++|. +|||+||+++||+. ++.++++.|++|+++.|+..|.+.+++|+. T Consensus 52 p~~~~~~~-----------~~~~~~l~~ll~~~PN~~~t~~~f~~~----~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~ 116 (376) T protein:vir:78 52 DFRLKNGE-----------TSVRDKLYYKLNIRPNTDMSSSSFWEK----VIYKLIYDNECLIVLSDTDDFLIADSYVRK 116 (376) T ss_pred ceeecccc-----------ccccchHHHHHhhccccCCCHHHHHHH----HHHHHhHcCcEEEEEEeCCCeeeccceeec Confidence 99998631 235699999996 89999999999876 567778999999999999999999999999 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) +..+...... .+...+++....++++||+|++++..+.. .++.+++..+...+. .....++.+| T Consensus 117 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~evih~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~ 180 (376) T protein:vir:78 117 EFAFFPDVFE-------GVTVKDYRYNRNFSMDDVIFLEYGNERLS---AFTDGMFEDYGELFG------KMIRAQMRNF 180 (376) T ss_pred ccceeeeeee-------eeeeecceeeeeeccccEEEeccCCCCch---hhhhHHHHHHHHHHH------HHHHHHHhcC Confidence 9876543211 11222333355789999999987654322 122223333322222 1222334456 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCc--ccCcccccCCCceeeeccCChhhH-----HHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGD--YTQVPILSGGKFTWIDFKGKRRDM-----QFKELA 373 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~--Nagkp~VL~~G~k~~pLs~sp~D~-----QflE~r 373 (945) |.++.+++.. ++.+++++.+++++.|++.++|. +++.++++++|++|+++++++.|+ ||+|++ T Consensus 181 ~~~~~~~~~~----------~~~~~~e~~~~~~~~~~~~~~g~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~ 250 (376) T protein:vir:78 181 QIRGAVNFKM----------AGVADKDKQTKLQEYIDKVYASFNNNEIAIVPQLEGFNYEEFGTTSVNNSQSFDEVKKLR 250 (376) T ss_pred CCceeEEEcc----------CCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceEEeeccCccccchhHHHHHHHH Confidence 6666555543 35689999999999999999883 445567799999999999988664 999999 Q ss_pred HHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHH Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDW 453 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~ker 453 (945) ++++++||++|||||++|| ++++|+|++..+|+++||.|++++||+++|++|++..+ ....++++.....|.+++ T Consensus 251 ~~~~~~Ia~~fgVPp~~l~----~~~s~~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~-~~~~~~~~~ll~~d~~~~ 325 (376) T protein:vir:78 251 KEMIDYVASILGIPSSLLH----GDMADLSNNMKAYMEYCIDPLTKKLEDELNAKLFTFSE-FLAGEHIKIIHKKDIIEN 325 (376) T ss_pred HHHHHHHHHHhCCCHHHhC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccc-ceecccchhhcccCHHHH Confidence 9999999999999999996 58899999999999999999999999999998877533 223455556667799999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHHhCCCCCCc--cccccccccccccccchhh Q lcl|Aclame:pro 454 WNIIQGQLNTGFRSINEARMEKGLEPVPWG--DVPFSGLRNWKPEDEQAKA 502 (945) Q Consensus 454 ae~~~~~v~~GimT~NEaRe~lGlpPveGG--D~~l~~~n~~~ped~~a~~ 502 (945) ++++++++++|++|+||+|+++|+||+||| |.++++.+.++..+....+ T Consensus 326 ~~~~~~~~~~G~~t~NE~R~~lg~~p~~~g~~d~~~~~~n~~~~~~~~e~g 376 (376) T protein:vir:78 326 AEAVDKLVASGSFNRNEVRELLGAERVDNPELDKYLITKNYQSADEGGEDG 376 (376) T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccCceehhccccCC Confidence 999999999999999999999999999988 8888887765543211111 No 76 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=100.00 E-value=2.9e-71 Score=407.28 Aligned_cols=373 Identities=13% Similarity=0.077 Sum_probs=280.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .=||++ ++++++. |...+ ...+++.+ ..+ ++.|.. ...++.+.|+++++|++||++||++||++ T Consensus 1 Mglf~~--~~~~~~~--~~~~~--~~~~~~~~---~~~--~~~~~~-----~~~v~~~~al~~~~V~~~i~~Ia~~ia~l 64 (384) T protein:vir:49 1 MPIFNI--TNLATES--PPSNQ--DSFFDITD---PEF--LDALNG-----SEWVSAETALKNSDLFSIISQLSNDLATA 64 (384) T ss_pred Cccccc--cccCccc--ccccc--hhhccccc---hhh--cccccC-----CceechhhhhccHHHHHHHHHHHHHHhhC Confidence 334432 2222221 11111 10011110 001 122221 22456778999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) ||++|++.. ..|+.+|||+||+++||+. ++.++++.|++|+++.|+..|++++|+||+| T Consensus 65 ~~~~~~~~~-----------------~~l~~~PN~~~t~~~f~~~----l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~ 123 (384) T protein:vir:49 65 KITTSRKQL-----------------QGIVDNPSNNANRFNFYQS----IFAQMLLGGEAFAYRWRNENGRDMKWEYLRP 123 (384) T ss_pred ceeeecchh-----------------hhhhhccCCCCCHHHHHHH----HHHHhhhcCCeEEEEEECCCCcEEEEEEEcC Confidence 999986322 2467899999999998765 5777889999999999999999999999999 Q ss_pred ceeEEEEcCCCceEEEEEEeeC---CceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVD---GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYR 298 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~d---G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~ 298 (945) ++|++..+.+++..+ |.+..+ ++....++++||||++.... ++ ..+|+||+.+++..++.+.++++++.++|. T Consensus 124 ~~v~v~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~eVih~~~~~~-~~--~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ 199 (384) T protein:vir:49 124 SQVSFNRLDNQNGLY-YNITFDDPRIPPKQHVPQGDILHFRLLSV-DG--GLTSVSPLMALGRELNIQKASDKLTLNALK 199 (384) T ss_pred ceeEEEEcCCCceEE-EEEEecCccccceeEecCccEEEecCCCC-CC--ceeeccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 999998877765432 333322 23467899999999986543 32 237999999999999999999999999996 Q ss_pred hCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 299 KGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVAR 378 (945) Q Consensus 299 nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~e 378 (945) ||++|+|||++++ .+++++.++ +.++...++.|+|+++++++|++|+++++++.|+||+|+++++++ T Consensus 200 -ng~~~~~il~~~~----------~~~~~~~~~--~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~ 266 (384) T protein:vir:49 200 -NALNANGILKIKG----------GGLLDFKTK--QSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTG 266 (384) T ss_pred -ccCCCceEEEeCC----------CCChHHHHH--HHHHHHhcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHH Confidence 5678999998864 234443332 223333445799999999999999999999999999999999999 Q ss_pred HHHHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cccceeEEEeechh--hcCH Q lcl|Aclame:pro 379 KICAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEF----RNEKDIKLWFKEDD--LEKE 450 (945) Q Consensus 379 eIA~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~----~~~~g~~f~fd~~~--l~D~ 450 (945) +||++|||||++||.... +++++++++...|++.++.||...|++++++++... ....+++++|+... ..+. T Consensus 267 ~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~pi~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (384) T protein:vir:49 267 QFAKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVSRFLRPFVSELSKKLSCEVDADILPAVDPTGSNYIGLINSMVKTGT 346 (384) T ss_pred HHHHHhCCCHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhccchHHHHHHHHHhhcCc Confidence 999999999999998543 456788999999999999999999999999876322 22334455555444 4578 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccc Q lcl|Aclame:pro 451 RDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSG 489 (945) Q Consensus 451 kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~ 489 (945) .++.+++..+.+.|+++ ||+|+.+|++|++|||.---- T Consensus 347 ~t~~e~~~~l~~~g~~~-ne~r~~~~~~p~~gGd~~~~~ 384 (384) T protein:vir:49 347 LAQNQGLYVLQQAEILP-KDLPEGETDSTLKGGETNEQY 384 (384) T ss_pred ccHHHHHHHHhhCCCCC-hhHHHHcCCCCCCCCCCCCCC Confidence 99999999999999986 999999999999999753211 No 77 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=100.00 E-value=1.8e-70 Score=402.97 Aligned_cols=384 Identities=14% Similarity=0.134 Sum_probs=284.1 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-||++.+ +++.. +.. .++..+.+. .. ...+.|. .+..++.+.++++|+|++||++||++||++ T Consensus 1 M~~f~~~~--~~~~~--~~~--~~~~~~~~~----~~-~~~~~~~-----~~~~v~~~~al~~~~v~~~i~~ia~~ia~~ 64 (386) T protein:vir:49 1 MPIFNITN--LATES--PPI--NQESFFDIA----DS-DFLASLN-----SSEWVSAENALKNSDLFSIISQLSNDLATA 64 (386) T ss_pred Cchhhhhc--cCCCC--ccc--chhhhhhhh----hc-ccccccc-----CCceechhhhhccHHHHHHHHHHHHHhhhC Confidence 55565432 22221 111 111111110 00 0011111 123567788999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) |++++++.. ..|+.+||++||+++||+. ++.+++++||+|+++.|+..|++++|+|++| T Consensus 65 p~~~~~~~~-----------------~~l~~~PN~~~t~~~f~~~----~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~ 123 (386) T protein:vir:49 65 KITTSRKQL-----------------QGIVDNPSNNANRFNFYQS----IFAQMLLGGEAFAYRWRNDNGRDMKWEYLRP 123 (386) T ss_pred ceeeccchh-----------------hhhhhccCCCCCHHHHHHH----HHHHhhhcCCEEEEEEECCCCcEEEEEEecC Confidence 999986432 2467799999999998776 5777889999999999999999999999999 Q ss_pred ceeEEEEcCCCceEE-EEEEe-eCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 222 TTIKPILSEDTGIVV-GYVQE-VDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRK 299 (945) Q Consensus 222 s~Vtv~~d~dG~~~~-~Yv~~-~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~n 299 (945) ++|++..+.+++... .|... ..++....++++||||++... +++ ..+|+||+.+++..++.+.++.+++.++|. T Consensus 124 ~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~-~~~--~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~- 199 (386) T protein:vir:49 124 SQVSFNRLDNQNGLYYNITFDDPHIAPKQHVPQNDILHFRLLS-VDG--GLTSVSPLMALGREFNIQKASDKLTISALK- 199 (386) T ss_pred ceeEEEEcCCCceEEEEEEEcCccccceeEEccccEEEecCCC-CCC--ccccccHHHHHHHHHHHHHHHHHHHHHHHH- Confidence 999999988776443 33222 234556789999999997643 333 237999999999999999999999999996 Q ss_pred CCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 300 GGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARK 379 (945) Q Consensus 300 nGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ee 379 (945) ||++|+++|+.+ +.+++++.+++++.|+.. ..|+|+++++++|++|+++++++.|+||++++++++++ T Consensus 200 ng~~~~~il~~~----------~~~~~~~~~~~~~~~~~~--~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~ 267 (386) T protein:vir:49 200 NALNANGILKIK----------GGGLLDFKTKVSRSRQAM--KQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQ 267 (386) T ss_pred ccCCccEEEEeC----------CCCChHHHHHHHHHHHHh--ccCCCCceecCCCceEEEccCChhHHHHHHHHHHHHHH Confidence 577899999885 356788888999988763 36889999999999999999999999999999999999 Q ss_pred HHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHH Q lcl|Aclame:pro 380 ICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQG 459 (945) Q Consensus 380 IA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~ 459 (945) ||++|||||++||.. ..++++.++ ..+|+..+|.|+++.|+++++++|.+. ++++.+.....|..+++..+.+ T Consensus 268 Ia~~fgVPp~~lg~~-~~~~~~~~~-~~~~~~~~i~~~l~~i~~~~~~~l~~~-----~~~~~~~~~~~d~~~~~~~~~~ 340 (386) T protein:vir:49 268 FAKVYGIPESIVGGD-GDQQSSLEM-IYNIYFKSVSRYLRPFVSEMSKKLSCE-----VDVDISPAVDPTGSNYISLINS 340 (386) T ss_pred HHHHhCCCHHHhCCC-CCccchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcch-----hcccchhhhccCHHHHHHHHHH Confidence 999999999999964 345566554 467889999999999999999988642 4455555566788999999999 Q ss_pred HHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 460 QLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 460 ~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) ++++|++|+||+|++++..++..++.+.....+. + ...+|..++.+ T Consensus 341 l~~~g~~t~nE~r~~l~~~~~~~~~~~~~~~~~~--------------~-----------~~~gGd~~~~~ 386 (386) T protein:vir:49 341 MVKSGTLAQNQGLYILQQAEILPKELPDGKNPNR--------------T-----------SLKGGEINEQD 386 (386) T ss_pred HHhCCCcCHHHHHHHHhhCCCCCCcCcchhccCC--------------C-----------CCCCCCCCCCC Confidence 9999999999999999877664333221100000 0 00011111111 No 78 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=100.00 E-value=1.3e-70 Score=403.73 Aligned_cols=367 Identities=12% Similarity=0.118 Sum_probs=258.4 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .=+|.+-+=|.+.+ .++. .....+| ..+..++++++|++||++||++||++ T Consensus 1 Mg~f~~~~~~~~~~--~~~~-----------------~~~~~~~----------~~~~~~~~~~~v~~~v~~IA~~iA~l 51 (378) T protein:vir:94 1 MNLFGKVVSFSRGK--LNND-----------------TQRVTAW----------QNEAVEYTSAFVTNIHNKIANEITKV 51 (378) T ss_pred CCccccchhccccc--ccCC-----------------cceeeee----------ccchhHHHHHHHHHHHHHHHhhhhhC Confidence 22332222111111 0110 0011111 11234567889999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEe-cCCCeEEEEEEc Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIR-DEQGNLVAITPV 219 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iir-d~~G~pveL~pL 219 (945) |+++|++.+++.... ......+||+++||+ +|||+||+++||+. ++.++++.|++|+++++ +..|+++.++|. T Consensus 52 p~~~~~~~~~~~~~~-~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gna~i~~~~~~~~g~~~~l~p~ 126 (378) T protein:vir:94 52 EFNHVKYKKSDVGSD-TLISMAGSDLDEVLNWSPKGERNSMDFWRK----VIKKLLSAPYVDLYAVFDDNTGELLDLLFA 126 (378) T ss_pred ceeeEEEcccCcccc-cccccccchHHHHHhhcCCCCCCHHHHHHH----HHHHHhhcCceEEEEEeeCCCceEEEEEec Confidence 999998877654321 223567899999998 89999999999876 56788999999987655 456777777653 Q ss_pred CCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 220 DGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRK 299 (945) Q Consensus 220 dPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~n 299 (945) .. ...++++||||++... ....|.||++.+++.+... + + T Consensus 127 ~~-------------------------~~~~~~~diiH~~~~~-----~~~~g~s~l~~~~~~i~~~----------~-~ 165 (378) T protein:vir:94 127 DD-------------------------KKEYKPEELVRLTSPF-----YINEDTSILDNALASIQTK----------L-E 165 (378) T ss_pred CC-------------------------eeEeeeeeeEEecCcC-----CccchhHHHHHHHHHHHHH----------H-h Confidence 21 1235778999997321 1225889999888876532 2 2 Q ss_pred CCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 300 GGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARK 379 (945) Q Consensus 300 nGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ee 379 (945) +| .|+|+|+++... .....+++++++++.|+..++|+++|+++++++|++|+++++++.|+|+ +.+++++++ T Consensus 166 ~~-~~~gil~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~ 237 (378) T protein:vir:94 166 QG-KLRGLLKINAFL------DIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSE 237 (378) T ss_pred cc-cccceeeeCCcC------CHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEEccCChhhhhH-HHHHHHHHH Confidence 34 478999875321 2233455566666667777778889999999999999999999999997 677999999 Q ss_pred HHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-ce--------eEEEeechhhcCH Q lcl|Aclame:pro 380 ICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNE-KD--------IKLWFKEDDLEKE 450 (945) Q Consensus 380 IA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~-~g--------~~f~fd~~~l~D~ 450 (945) ||++|||||++|+ + +++|++..+|+++||.||+++||++++++|++..++ .+ ++|+++.....|. T Consensus 238 Ia~~fgVP~~~l~----~--~~se~~~~~f~~~tL~P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~~l~~~d~ 311 (378) T protein:vir:94 238 LLTGYFMNENILL----G--TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) T ss_pred HHHHhCCCHHHhc----C--ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeecchhhhhcCH Confidence 9999999999994 2 345889999999999999999999999998875322 11 3455556666799 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 451 RDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 451 kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) ++|++++++++++|+||+||+|+++|+||+||||.++++.+.++..+.. ..+. + ..+..+++.++++ T Consensus 312 ~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~-~~~~-~-----------~~~~~~~~e~~n~ 378 (378) T protein:vir:94 312 KELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLS-DLQG-S-----------RKDVTSTDETNNQ 378 (378) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeecccccccccch-hhcC-C-----------cCCCCCCCCCCCC Confidence 9999999999999999999999999999999999999998876543321 1110 0 0000111111111 No 79 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=100.00 E-value=7.9e-71 Score=404.91 Aligned_cols=539 Identities=15% Similarity=0.154 Sum_probs=336.8 Q ss_pred hhhhhhhccceeeeeeeeeecceeeeccccccccc-cccC---CCCCcccccCcccceeccccCCcccchhhhhhHHhhh Q lcl|Aclame:pro 47 LTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYN-HQEP---PFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRF 122 (945) Q Consensus 47 ~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~-~r~p---p~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am 122 (945) .| .++ =.-|++.+|....-.... .+++ +.++..+. ...++ ++.+.+| ..++..+- T Consensus 1 ~~------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~p~~~~------~~L~~~~e 59 (651) T protein:vir:99 1 MT------DTT------GETQETKVHVEGLGGEADLAKSPNSTQIPDHRIQ-SHNVG--VNPPYNP------DRLAAFLE 59 (651) T ss_pred CC------Ccc------ceeeeeEEEeecccccccccccccccccchhhhc-ccCCC--CCCCCCH------HHHHHHHh Confidence 00 000 000222222221110111 1111 11111111 11111 1211122 34667777 Q ss_pred ccHHHHHHHHHHHHhhccCceEEEEecc-Ccccccccchhh------cccHHHHHHh-ccCccCChHHHHHHHHHHHHHH Q lcl|Aclame:pro 123 NNDSKLIKVSEIPKKLTSKELEIYKHIE-DKHVNYYLKRIR------DARNILEFLE-RPDPYFSEVNSWEYLLGMVLDD 194 (945) Q Consensus 123 ~nsaV~aCV~iIA~~IAsLP~~VyRrte-dg~ee~~~r~~a------~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~d 194 (945) .++++++||++++++||+++|.+.+... ++......+..+ ..|+.+..+. .+|+.+|..++ +..++.| T Consensus 60 ~~~~~~~~i~~~~~~iag~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i----~~~~~~D 135 (651) T protein:vir:99 60 LNETLATGIRKKSRYEVGFGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERV----KELARQD 135 (651) T ss_pred cChHHHHHHHHHhhhhhccCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHH----HHHHHHH Confidence 8999999999999999999999876432 221111111111 2344444443 67999998764 5567788 Q ss_pred HhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCc---------------------------------eEEE---- Q lcl|Aclame:pro 195 ILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTG---------------------------------IVVG---- 237 (945) Q Consensus 195 lLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~---------------------------------~~~~---- 237 (945) ++.+|++|+.++++..|.|++|+++++..+++..+.+.. .++. T Consensus 136 le~tGna~ieiIrn~~g~pv~L~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~ 215 (651) T protein:vir:99 136 YHGVGWLALEMLTDIEGRPVGLAYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDR 215 (651) T ss_pred HHHHhhHhhhhhhcCccchhhhhhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeecc Confidence 999999999999999999999999999877653321100 0000 Q ss_pred ------------------------------------E-EEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHH Q lcl|Aclame:pro 238 ------------------------------------Y-VQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILY 280 (945) Q Consensus 238 ------------------------------------Y-v~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~ 280 (945) + +...+++....++++||||++.+.+.+ +.+|+||+..++ T Consensus 216 ~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eViHir~~~~~~---g~~G~spl~~a~ 292 (651) T protein:vir:99 216 YRGQEVVIDESGDEPTIRYREDEESEREPIFVDRETGDVTTGDANGLENRPANELIFIPNPSILE---DDYGVPDWVSAI 292 (651) T ss_pred ccceeeeeccCCcceeEEeccCcceeeeeecccceeeeEEEcCCCceeEecccceEEecCCCCCC---CcccccHHHHHH Confidence 0 011122334567889999997653222 347999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCC------- Q lcl|Aclame:pro 281 KVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGG------- 353 (945) Q Consensus 281 ~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~------- 353 (945) .++..+.++++++.++|. ||++|+|||++++ +.+++++++++++.|++.++ |+|++++|+. T Consensus 293 ~~i~~a~~a~~~~~~~f~-NG~~p~gil~~~~---------~~ls~e~~~~lr~~~~~~~~--nagk~~vL~~~~~~~~~ 360 (651) T protein:vir:99 293 RTISADEAAKDYNRDFFD-NDTIPRMVIKVTG---------GELSEESKRDLRQMLNGLRE--ESHRAVVLEVEKFQSQL 360 (651) T ss_pred HHHHHHHHHHHHHHHHHh-ccCCCceEEEecC---------CCCCHHHHHHHHHHHHHHhc--cCCceEEeecccccccc Confidence 999999999999999996 5788999998753 35899999999999998764 6788888765 Q ss_pred ----CceeeeccCCh-hhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 354 ----KFTWIDFKGKR-RDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEV 428 (945) Q Consensus 354 ----G~k~~pLs~sp-~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~k 428 (945) |++|+++++++ .|+||+|++++++++||++|||||++||+.+++|+||+|++.+.|+++||+||+++||++||++ T Consensus 361 ~~~~g~~~~pls~~~~~D~qfle~r~~~~~eIa~afgVPp~~lG~~~~~~~sn~E~~~~~f~~~tL~P~~~~ie~eln~k 440 (651) T protein:vir:99 361 DEDVEIELEPMGQGISEEMDFRQFREKNEHEIAKVLEVPPVKIGVTDSANRSNSDQQDKDFALEVIQPEQHTFAEWLYQI 440 (651) T ss_pred cccCCceEEEcCcCchhhHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999987 5999999999999999999999999999999999999999999999999999999999999998 Q ss_pred hccccc-cc--eeEEEeec--hhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCC--ccccccccccccccccchh Q lcl|Aclame:pro 429 VSEFRN-EK--DIKLWFKE--DDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPW--GDVPFSGLRNWKPEDEQAK 501 (945) Q Consensus 429 L~~~~~-~~--g~~f~fd~--~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveG--GD~~l~~~n~~~ped~~a~ 501 (945) |++... .. .++|+|+. ....|.+++++++..++++|+||+||+|+++|+||+++ ||..+.+.+.....+. T Consensus 441 Ll~~~e~~~~~~i~~ef~~~~llr~D~~~~~e~~~~~i~~G~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~g~~--- 517 (651) T protein:vir:99 441 IHQQALGVTDWTIEYELRGADQPKQEAQLAEQRVRAMRLAGVGLVDEAREELGLDPLGEPYGEMTLSEFEAEVAGDV--- 517 (651) T ss_pred hcCccccccCceEEEEeccchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcccccccccccccccccc--- Confidence 876543 22 35667766 44569999999999999999999999999999999964 6665544332211110 Q ss_pred hccCCCCcccccccCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHhhhhhhhhHHH-HHhhccCCcccccc---chHH Q lcl|Aclame:pro 502 AQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAGLEVLRNLFKSLDANASENL-KQVIELTNDDNYLK---EKEL 577 (945) Q Consensus 502 ~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k~l~a~~~~~~-~~~~dl~n~~~~l~---e~~~ 577 (945) +... ......+++.++..+..+.+..+++.. .. +.+ ..-.+.+++.---+ .+.+ T Consensus 518 ----~~gg-e~~~~~~~~~~~~~~~~e~~~~~~~~~---------------~~--e~~~~~~v~ss~~~~~gyd~~~~~l 575 (651) T protein:vir:99 518 ----AGGG-ETEAVHEPPEENKIGEREWDTVKSELT---------------TK--DPIEQMQFSSSNLDEGLYDFGENEL 575 (651) T ss_pred ----ccCC-CCcccccCccccccccchhhhhhhhhc---------------cc--chhhhhhHHHHHHHhhcCCCccceE Confidence 0000 000001111111111111111111100 00 000 00111111111011 1334 Q ss_pred HHHHHHhhhhHHHHHhhhhhhhc-ccccCCCcccccchhhHHHHHHhhccch--hhhhhhhcccccchhhhhhhhhhccc Q lcl|Aclame:pro 578 LTRVLKSVGLDSVSEFIENNSQT-DVEVSAKDILSFKYNSLVEDETIYATEK--DIVLRLLGKNSLDHRETFGLIATHFD 654 (945) Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (945) .-.|....+..++|.|..+|..+ ...++|.|.++|.+..|- . .|.-+| +.--||-... .-| T Consensus 576 ~~~f~~~~~~~~~y~y~~v~~~~~~~~~~a~s~g~~~~~~i~-~--~~~~~~~~~~~~~~~~~~-------------~~~ 639 (651) T protein:vir:99 576 YLSFLRDEGQSSLYAYVDVPASEWSALANAGSHGGYHYDNIR-L--EYPYLEITNFHDRLPEGP-------------APD 639 (651) T ss_pred EEEEeecCCCCceeeeeCCCHHHHHHHhcCcccceeehhccc-c--ccchhhhhhhhhhCCCCC-------------CCC Confidence 44555555668999999999999 999999999999887773 2 354443 1111221111 122 Q ss_pred cccccceeeecCccce Q lcl|Aclame:pro 655 CHTVPKVEFYSDKDKR 670 (945) Q Consensus 655 ~~~~~~~~~~~~~~~~ 670 (945) ...||.-- .|.- T Consensus 640 ~~~~~~~~----~~~~ 651 (651) T protein:vir:99 640 AGDVPDGV----PDEI 651 (651) T ss_pred cCCCCCCC----cccC Confidence 22233100 0000 No 80 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=100.00 E-value=2.1e-70 Score=402.54 Aligned_cols=367 Identities=12% Similarity=0.110 Sum_probs=259.9 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-+|.|-+=|... ..+..+.... .-..+..+++.++|++||++||++||++ T Consensus 1 Mg~f~~~~~~~~~----------------------------~~~~~~~~~~-~~~~~~~~~~~~~v~~~i~~Ia~~iA~l 51 (378) T protein:vir:16 1 MNLFGKVVSFSRG----------------------------KLNNDTQRVT-AWQNEAVEYTSAFVTNIHNKIANEITKV 51 (378) T ss_pred Cccchhhhhhhcc----------------------------cccCCcceee-ecccchhhHHHHHHHHHHHHHHhhhhhC Confidence 3333332211100 0001110000 0011334568889999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC-CCeEEEEEEc Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE-QGNLVAITPV 219 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~-~G~pveL~pL 219 (945) ||++|+++.++..... .....+||+++||+ +||++||+++||+. ++.++++.|++|++++++. .|+++.++|. T Consensus 52 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gna~i~~~~d~~~g~~~~l~~~ 126 (378) T protein:vir:16 52 EFNHVKYKKSDVGSDT-LISMAGSDLDEVLNWSPKGERNSMDFWRK----VIKKLLRAPYVDLYAVFDDNTGELLDLLFA 126 (378) T ss_pred ceeEEEEccccccccc-ccccccchHHHHHhhcCCCCCCHHHHHHH----HHHHHhhcCceEEEEEeecCCceEEEEEec Confidence 9999998776543321 23456899999998 89999999999876 5677789999999887765 3666665553 Q ss_pred CCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 220 DGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRK 299 (945) Q Consensus 220 dPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~n 299 (945) .. ...|+++||||++.. .....|.||+..+++.+.. .+ . T Consensus 127 ~~-------------------------~~~~~~~diih~r~~-----~~~~~~~s~l~~~~~~i~~----------~~-~ 165 (378) T protein:vir:16 127 DD-------------------------KKEYKPEELVRLTSP-----FYINEDTSILDNALASIQT----------KL-E 165 (378) T ss_pred CC-------------------------eeEecccceEEecCc-----cCccchhHHHHHHHHHHHH----------HH-h Confidence 21 134567899999732 1123478888887766532 23 2 Q ss_pred CCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 300 GGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARK 379 (945) Q Consensus 300 nGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ee 379 (945) +| .|+|+|+.+... ..+..+++++++++.|++..+|+++|+++++++|++|+++++++.|+|+ +.+++++++ T Consensus 166 ~~-~~~g~l~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~ 237 (378) T protein:vir:16 166 QG-KLRGLLKINAFL------DIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSE 237 (378) T ss_pred cC-ccceeeEeCCcC------CHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhH-HHHHHHHHH Confidence 44 578999875421 2234455667777777777788899999999999999999999999997 556899999 Q ss_pred HHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-c--------eeEEEeechhhcCH Q lcl|Aclame:pro 380 ICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNE-K--------DIKLWFKEDDLEKE 450 (945) Q Consensus 380 IA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~-~--------g~~f~fd~~~l~D~ 450 (945) ||++|||||.+|+ ++++|++..+|+++||.||+++||++++++|++.... . .++|+++.....|. T Consensus 238 Ia~~fgVPp~~l~------g~~~e~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~~l~~~d~ 311 (378) T protein:vir:16 238 LLTGYFMNENILL------GTASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) T ss_pred HHHHhCCCHHHhc------CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhcccccceeeccchhhhcCH Confidence 9999999999994 3456899999999999999999999999988775432 1 14456666777799 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 451 RDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 451 kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +++++++.+++++|++|+||+|+++|+||+||||+++++.|.++..+... .+.+ ..+..+++.++++ T Consensus 312 ~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~-~~~~------------~~~~~~~~e~~ne 378 (378) T protein:vir:16 312 KELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSD-LQGS------------RKDVTSTDETNNQ 378 (378) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeeccccccccchhh-hcCc------------cCCCCCCCCCCCC Confidence 99999999999999999999999999999999999999988765543211 1110 1111111122222 No 81 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=100.00 E-value=6.7e-70 Score=399.82 Aligned_cols=383 Identities=9% Similarity=0.036 Sum_probs=258.0 Q ss_pred eeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 60 YSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLT 139 (945) Q Consensus 60 ~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IA 139 (945) -.| .+|++.+..+...... .++ +. .|+ ....++.+.++++++|++||++||++|| T Consensus 1 Mg~----~~~~~~~~~~~~~~~~--------~~~-----~~---~~~-----~~~~~~~~~~l~~~~v~~~v~~Ia~~ia 55 (395) T protein:vir:40 1 MGF----KSWVSGFFNEEQRTLN--------LTD-----TV---WCS-----IPSEKLKELSIKKWAIDSCANKIANTLS 55 (395) T ss_pred Cch----HHHHHhhhcccccccc--------ccc-----ch---hhc-----cccccchhhhhhhHHHHHHHHHHHHHHh Confidence 111 1122111111111100 000 00 011 1224566788999999999999999999 Q ss_pred cCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEE Q lcl|Aclame:pro 140 SKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITP 218 (945) Q Consensus 140 sLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~p 218 (945) ++||++|++++ ...|+++.+|+ +|||+||+++||+. ++.++++.|++|+++.++.. ++ T Consensus 56 ~~p~~~~~~~~-----------~~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnay~~~~~~~~------~~ 114 (395) T protein:vir:40 56 CAEVLTYEKGE-----------EVRKKNWYMFNVEANQNQNATEFWKK----AIYKLVYDNEALIFMQDEYI------YV 114 (395) T ss_pred hCceeeccCCc-----------cccchHHHHHHhcCCCCCCHHHHHHH----HHHHHhhcCceEEEEecCce------ee Confidence 99999986422 23588888887 89999999999776 56777899999998877642 33 Q ss_pred cCCceeEEEEcCCCceEEEEEEeeCCc-eeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 219 VDGTTIKPILSEDTGIVVGYVQEVDGA-IVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYY 297 (945) Q Consensus 219 LdPs~Vtv~~d~dG~~~~~Yv~~~dG~-~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F 297 (945) .++..+ .........+..+. .++. ....++++||+|++++.... .+++.+.+..+...+.... ..++ T Consensus 115 ~~~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~~~~evih~r~~~~~~---~~~~~~l~~~~~~~~~~~~------~~~~ 182 (395) T protein:vir:40 115 ADSFTK--NDKSLYENTYTEVT-LKDLTLKKEFKESEVLHLTLNNESI---KSIIDGFYLLYGDLLTAAV------NKYK 182 (395) T ss_pred cCCccc--cccccccceeeeee-ecCceeeeeeccccEEEeecCCCCc---cccchhHHHHHHHHHHHHH------HHHH Confidence 222211 11111111111121 2222 24568999999998654322 2233333344333333222 2233 Q ss_pred HhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC--cccCcccccCCCceeeeccCChhhHHHHHHHHH Q lcl|Aclame:pro 298 RKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG--DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEF 375 (945) Q Consensus 298 ~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG--~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~ 375 (945) .+|+.++.+++.. +..+++++.+++++.|++.++| +++++++++++|++|+++++++.|+||+|.+++ T Consensus 183 ~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~ 252 (395) T protein:vir:40 183 KLNSRKIIVKLKA----------MFGQTPEAEEKLRLMLSERMKKFLAEGDSALPVEDGMEIDELAGDSKIAESRDIKKM 252 (395) T ss_pred hcCCCCceEEEec----------ccCCCHHHHHHHHHHHHHHHHHhhccCCceeecCCCceEEeccCChhhhhHHHHHHH Confidence 3566555555433 3457899999999999999877 578889999999999999999999999999988 Q ss_pred HH---HHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cceeEEEee--chhhcC Q lcl|Aclame:pro 376 VA---RKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN-EKDIKLWFK--EDDLEK 449 (945) Q Consensus 376 ~~---eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~-~~g~~f~fd--~~~l~D 449 (945) .. ++||++|||||++|| ++++|+|++...|+++||.||+++||+++|++|++... ..+++|+|| .....| T Consensus 253 ~~~~~~~Ia~~fgVPp~~l~----~~~sn~e~~~~~f~~~~L~P~~~~ie~~l~~kLl~~~~~~~g~~i~fd~~~ll~~d 328 (395) T protein:vir:40 253 IDDVFEMVANSFNIPLGLAK----GDTVGLSEQVNSFLMFSINPIAEMFTDEGNRKFYGRDSVLERTYMKLDTTRIKVQD 328 (395) T ss_pred HHHHHHHHHHHhCCCHHHhc----CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCceEEEechhhhccC Confidence 74 799999999999996 67899999999999999999999999999998877543 334555555 555669 Q ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCC--ccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCC Q lcl|Aclame:pro 450 ERDWWNIIQGQLNTGFRSINEARMEKGLEPVPW--GDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVD 527 (945) Q Consensus 450 ~kerae~~~~~v~~GimT~NEaRe~lGlpPveG--GD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~d 527 (945) .+++++++.+++++|++|+||+|+++|+||++| ||.++++.+..+...... ...+|+.+ T Consensus 329 ~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~-------------------~~kgge~~ 389 (395) T protein:vir:40 329 IQEIASSMDVLFHIGVNTIDDNLRMIGREPVMSPETQERFVTKNYAPLGENEE-------------------DLKGGDIN 389 (395) T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCceeeecccccccccccc-------------------ccCCCCCC Confidence 999999999999999999999999999999965 899998887654432110 00111111 Q ss_pred CCcccc Q lcl|Aclame:pro 528 ENSSVP 533 (945) Q Consensus 528 d~e~~~ 533 (945) +++..+ T Consensus 390 ~~~~~~ 395 (395) T protein:vir:40 390 ENKGDS 395 (395) T ss_pred CCcCCC Confidence 111111 No 82 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=100.00 E-value=7.9e-70 Score=399.42 Aligned_cols=367 Identities=12% Similarity=0.107 Sum_probs=258.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-+|.|-+=|+..+. ++ ......+|. ....+++.++|++||++||++||++ T Consensus 1 Mg~f~~~~~f~~~~~--~~-----------------~~~~~~~~~----------~~~~~~~~~~v~~~i~~Ia~~iA~l 51 (378) T protein:vir:93 1 MNLFGKVVSFSRGKL--NN-----------------DTQRVTAWQ----------NEAVEYTSAFVTNIHNKIANEITKV 51 (378) T ss_pred Cccchhhhhhhcccc--CC-----------------Ccceeeecc----------cchhHHHHHHHHHHHHHHHhhhhhC Confidence 223333221111100 00 000001111 1234567889999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec-CCCeEEEEEEc Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD-EQGNLVAITPV 219 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird-~~G~pveL~pL 219 (945) ||++|++++++.... ......+|++++||+ +|||+||+++||+. ++.++++.|++|++++++ ..|+++.++|. T Consensus 52 p~~~~~~~~~~~~~~-~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gn~~i~~~~~~~~g~~~~l~~~ 126 (378) T protein:vir:93 52 EFNHVKYKKSDVGSD-TLISMAGSDLDEVLNWSPKGERNSMDFWRK----VIKKLLRAPYVDLYAVFDDNTGELLDLLFA 126 (378) T ss_pred ceeeEEEcccccccc-cccccccchHHHHHhhcCCCCCCHHHHHHH----HHHHHhhcCceEEEEEeecCCceEEEEEec Confidence 999999877654322 123457899999998 89999999999876 567788999999987765 44666666552 Q ss_pred CCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 220 DGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRK 299 (945) Q Consensus 220 dPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~n 299 (945) .. ...++++||||++.. . ....|.||+..+++.+. .+| . T Consensus 127 ~~-------------------------~~~~~~~diih~r~~---~--~~~~~~s~l~~~~~~i~----------~~~-~ 165 (378) T protein:vir:93 127 DD-------------------------KKEYKTEELVRLTSP---F--YINEDTSILDNALASIQ----------TKL-E 165 (378) T ss_pred CC-------------------------eeEeccceeEEecCc---c--ccchhhHHHHHHHHHHH----------HHH-h Confidence 11 234678899999732 1 12348888887776553 234 3 Q ss_pred CCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 300 GGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARK 379 (945) Q Consensus 300 nGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ee 379 (945) +| .|+|+|+.+... .....+++++++++.|++.++|+++++++++++|++|+++++++.|+|+ +.+++++++ T Consensus 166 ~~-~~~g~l~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~ 237 (378) T protein:vir:93 166 QG-KLRGLLKINAFL------DIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSE 237 (378) T ss_pred cC-cccceeeeCCcC------CHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhH-HHHHHHHHH Confidence 45 478999875321 2334455666667777777778889999999999999999999999997 677899999 Q ss_pred HHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-ce--------eEEEeechhhcCH Q lcl|Aclame:pro 380 ICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNE-KD--------IKLWFKEDDLEKE 450 (945) Q Consensus 380 IA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~-~g--------~~f~fd~~~l~D~ 450 (945) ||++|||||++|+ ++++|++..+|++.||.||+++||++||++|++..++ .+ ++|+++.....|. T Consensus 238 Ia~~fgVPp~~l~------g~~~e~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~ 311 (378) T protein:vir:93 238 LLTGYFMNENILL------GTATQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) T ss_pred HHHHhCCCHHHhc------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcCH Confidence 9999999999994 3456899999999999999999999999988765322 11 3455566667799 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 451 RDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 451 kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) ++|++++++++++|++|+||+|+++|+||+||||+++++.+.++..+.. ..+. + ..+.++++.++++ T Consensus 312 ~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~-~~~~-~-----------~~~~~~~~e~~n~ 378 (378) T protein:vir:93 312 KELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLS-DLQG-S-----------RKDVTSTDETNNQ 378 (378) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccccccccchh-hhcC-c-----------cCCCCCCCCCCCC Confidence 9999999999999999999999999999999999999988776543321 1111 0 0001111111121 No 83 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=100.00 E-value=2.4e-69 Score=396.81 Aligned_cols=377 Identities=11% Similarity=0.043 Sum_probs=260.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-|| +++++|... + .+.. . . .. ....++...++++++|++||++||++||++ T Consensus 1 Mgl~--d~~~~~~~~-------~----~~~~----~------~---~~--~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~l 52 (395) T protein:vir:96 1 MGIL--DFFSFKKSG-------T----LSDD----D------S---GS--TTSEKLTNVVLKEDALYKCVNYLARIISKS 52 (395) T ss_pred Ccch--hhhcCCCCc-------c----cccc----c------c---cc--chhhhcchhhhhhHHHHHHHHHHHHhhccc Confidence 5566 455443210 0 0000 0 0 00 012345677899999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|+..+. ...+|++++||+ +|||+||+++||+. ++.++++.|++|+++.++..+.+...++.. T Consensus 53 p~~v~~~~~~---------~~~~~~~~~lL~~~PN~~~t~~~f~~~----l~~~lll~Gna~~~~~~~~~~~~~~~~~~~ 119 (395) T protein:vir:96 53 TFRIKAPEKL---------TENQKDWLYWINTKANPNQSASQFWVE----VVQKLLVDGETLIFVIPGKGIYVADAFTQD 119 (395) T ss_pred eeEEEeCCcc---------ccccchHHHHHhhcCCCCCCHHHHHHH----HHHHHhhcCceEEEEEcCCceecCCccccc Confidence 9999974322 335799999997 89999999999876 466678999999999888654332222211 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHH------HHHHHHHHHH Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVIL------SDIFIDKGNL 294 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~------~~~aaee~~a 294 (945) . .. .+..+ ..+...++.....++++||+|++.+..+... ++.+++..+...+. ....+.++.. T Consensus 120 ~-----~~--~~~~~-~~v~~~~~~~~~~~~~~dvih~k~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 188 (395) T protein:vir:96 120 K-----KL--SGNKF-KVSRVQGQTYEKIFTFDQVIYLKNDNSDLML---KVESLWEEYGELLGHVINNQKIANQIRFTM 188 (395) T ss_pred c-----cc--cccee-eeeeeccceeeeEeccCceEEecccCCcccc---ccccccchHHHHHHHHHHHHHHHHHHHHHh Confidence 1 11 11111 1122223333567899999999866543221 22222233222222 2233446777 Q ss_pred HHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC--cccCcccccCCCceeeeccCChhhHHHHHH Q lcl|Aclame:pro 295 DYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG--DYTQVPILSGGKFTWIDFKGKRRDMQFKEL 372 (945) Q Consensus 295 ~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG--~Nagkp~VL~~G~k~~pLs~sp~D~QflE~ 372 (945) ++|.+ |..|.+++... ++++.+..++.|++.+++ .+++.++++++|++|+++++++.|+|+++. T Consensus 189 ~~~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~d~q~~e~ 254 (395) T protein:vir:96 189 TPPKD-KVRERAQENSD-------------GGRQPKSDKDFFKRTIEKIRTESVVGIPVTANTNYEEYGSKNTGSVKSYV 254 (395) T ss_pred hhccc-ccccceeeccC-------------chhhHHHHHHHHHHHHHHhhcCCcceEEccCCceeEecccChhhhhhhhH Confidence 77754 56788887653 222334444555555444 345567789999999999999999999999 Q ss_pred HHHH------HHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccceeEEEeech Q lcl|Aclame:pro 373 AEFV------ARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEF-RNEKDIKLWFKED 445 (945) Q Consensus 373 rk~~------~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~-~~~~g~~f~fd~~ 445 (945) +++. +++||++|||||++|| ++++|+|++..+|+++||.||+++||++++++|++. +...+++|+++.. T Consensus 255 ~~~~~~~~~~~~eIa~~fgVPp~~l~----~~~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~Ll~~~e~~~~~~f~~~~l 330 (395) T protein:vir:96 255 DDIKKLKDQYMAEFAEMLGIPISLLH----GDIADNQKNYELLLEGPIESLITNIVDGLEYAIFDKSETLEGSFIKVTGL 330 (395) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHhc----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceeEeecch Confidence 8776 5899999999999996 688999999999999999999999999999988765 3345688999888 Q ss_pred hhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCC--ccccccccccccccccchhhccCCCCcccccccCCCCCCCC Q lcl|Aclame:pro 446 DLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPW--GDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQG 523 (945) Q Consensus 446 ~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveG--GD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~ 523 (945) ...|.+++++++++++++|++|+||+|+++|+||+|| ||.++++.|..+..+.. ++.. T Consensus 331 ~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~~~~gD~~~~~~N~~~~~~~g----------------ge~~---- 390 (395) T protein:vir:96 331 KNYDLFSISSQADKLISSGFVFIDEVREEIGLPELPDGLGKVLYMTKNYESVLERG----------------GEVD---- 390 (395) T ss_pred hccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccceechhcc----------------CCCC---- Confidence 8899999999999999999999999999999999977 99999888766543210 0000 Q ss_pred CCCCCC Q lcl|Aclame:pro 524 GGVDEN 529 (945) Q Consensus 524 g~~dd~ 529 (945) +.+++ T Consensus 391 -~~~~~ 395 (395) T protein:vir:96 391 -EEVET 395 (395) T ss_pred -CCCCC Confidence 00000 No 84 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=100.00 E-value=3e-68 Score=390.80 Aligned_cols=379 Identities=14% Similarity=0.128 Sum_probs=276.0 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-+|+| +++++.. +. ...+.+. ...+ ..+|. ....++.+.++++++|++||++||++||++ T Consensus 1 Mg~f~~--~~~~~~~----~~---~~~~~~~---~~~~--~~~~~-----~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~ 61 (382) T protein:vir:48 1 MPIFNL--ATESPPD----NQ---GGFFDVV---DSDF--LASLK-----GNEWVSAETALRNSDLFSIINQLSNDLATV 61 (382) T ss_pred Cccccc--cccCCcc----cc---cccccch---hhhc--ccccc-----CCcccchHhhhccHHHHHHHHHHHHhhccC Confidence 445543 3333211 11 1111111 0111 11222 123577788999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) ||++|+... ..|+.+||++||+++||+. ++.+++++|++|++++|+..|++++|+||+| T Consensus 62 ~~~~~~~~~-----------------~~L~~~PN~~~t~~~f~~~----l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~ 120 (382) T protein:vir:48 62 KLITSRKKL-----------------QGIVDNPSNNANRFNFYQS----IFAQMLLGGEAFAYRWRNENGRDMKWEYLRP 120 (382) T ss_pred ceeeecchh-----------------hhhhhhcCCCCCHHHHHHH----HHHHhhhcCCEEEEEEECCCCcEEEEEEEcC Confidence 999986422 2367799999999998765 6778899999999999999999999999999 Q ss_pred ceeEEEEcCCCceEEEEEEeeCC---ceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVDG---AIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYR 298 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~dG---~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~ 298 (945) ++|++..+.+|+..+ |.+..++ +....++++||||++.... ++ ..+|+||+.+++.++....++++++.++|. T Consensus 121 ~~v~v~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~evih~~~~~~-~~--~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ 196 (382) T protein:vir:48 121 SQVSFNRLDNKDGIY-YNITFDDPRIPPKQHVPQNDVLHFRLLSV-DG--GMTSVSPLMALSRELDIQKASGNLTINSLK 196 (382) T ss_pred ceeEEEEcCCCCeEE-EEEEecCccccceeEEcCccEEEecCCCC-CC--ccccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 999999988876543 3333333 3456799999999986543 32 247999999999999999999999999996 Q ss_pred hCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 299 KGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVAR 378 (945) Q Consensus 299 nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~e 378 (945) ||++|+|||+++ +.+++++.+++++.|.... .|+|+++|+++|++|+++++++.|+||+|++++.++ T Consensus 197 -ng~~p~~il~~~----------~~~~~e~~~~~~~~~~~~~--~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~ 263 (382) T protein:vir:48 197 -NALNANGILKIK----------GGGLLDFKTKLSRSRQAMK--QMQGGPLVLDDLEDFTPLEIKSNVSQLLKQADWTTG 263 (382) T ss_pred -ccCCCceEEEeC----------CCCChHHHHHHHHHHHhhc--cCCCCeeEcCCCceEEEccCChhHHHHHHHHHHHHH Confidence 567899999885 3578889999999887643 578999999999999999999999999999999999 Q ss_pred HHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHH Q lcl|Aclame:pro 379 KICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQ 458 (945) Q Consensus 379 eIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~ 458 (945) +||++|||||.+||..+. +++.+++..+|++.+|.|+++.|+++++++|++..+.. ....++ .+.......+. T Consensus 264 ~Ia~afgVp~~~lg~~~~--~~~~~~~~~~~~~~~l~p~~~~i~~~l~~~l~~~~~~~-~~~~~~----~~~~~~~~~~~ 336 (382) T protein:vir:48 264 QFAKVYGIPDNVVGGQGD--QQSSLEMSSDLYSKAVSRYLRPFLSELSQKLSCDVDAD-IFPAVD----PTGSNYISRIN 336 (382) T ss_pred HHHHHhCCCHHHhCCCCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh-hhhhhc----cchhHHHHHHH Confidence 999999999999997554 44678888999999999999999999999997754321 111111 23344455667 Q ss_pred HHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 459 GQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 459 ~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) .++++|++|+||+|+.++..++.-.+.+. . .+..+ ...+|..++++ T Consensus 337 ~l~~~g~~t~~e~r~~l~~~g~~~~~~~~--------------~-~~~~~-----------~~~GGd~~~~~ 382 (382) T protein:vir:48 337 SLVKTGTLAQNQGLYILQQAEILPKELPN--------------G-ENPNS-----------TLKGGEEDGQD 382 (382) T ss_pred HHhhcCccCHHHHHHHHhhCCCCCcchhh--------------h-hcCCC-----------CCCCCCCCCCC Confidence 88999999999999998654431110000 0 00000 00111111111 No 85 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=100.00 E-value=8.7e-69 Score=393.70 Aligned_cols=381 Identities=12% Similarity=0.051 Sum_probs=266.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-|| ++++++... ..+ . ..+ + .....++...++++++||+||++||++||++ T Consensus 1 MGlf--~~~~~~~~~-------~~~------~--------~~~---~--~~~~~~~~~~~~~~~~v~~~I~~ia~~iA~l 52 (395) T protein:vir:98 1 MGIL--DFFSFKKSG-------TLS------D--------DDS---G--STTSEKLTNVVLKEDALYKCVNYLARIISKS 52 (395) T ss_pred Ccch--hhhcCCCcc-------ccc------c--------ccc---c--hhhhhhcchhhhhhHHHHHHHHHHHHHHhhC Confidence 6666 344332110 000 0 000 0 1112455677899999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|+.... ...+||+++||+ +|||+||+++||+. ++.++++.|++|+++.++..+. ++ T Consensus 53 p~~~~~~~~~---------~~~~~~~~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnayi~~~~~~~~~------~~ 113 (395) T protein:vir:98 53 TFRLKTPEKL---------TENQKDWLYWINTKANPNQSASQFWVE----VIQKLLVDGETLIFVIPGKGIY------VA 113 (395) T ss_pred ceeEEecCCc---------ccccchHHHHHhhcCCCCCCHHHHHHH----HHHHHhhcCceEEEEEeCCcee------cC Confidence 9999974322 234699999997 89999999999876 5677789999999998875432 22 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHH--HHHHHHHHH Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFI--DKGNLDYYR 298 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aa--ee~~a~~F~ 298 (945) +..+... ...+.. +..+.....+....++++||||++.... +... ++.+++......+...... ..+..+++. T Consensus 114 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~evih~k~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (395) T protein:vir:98 114 DSFTQDK-KISGSQ-FKVSRVQGQTYEKTFTFDQVIYLKNDNS-DLMS--KVESLWEEYGELLGHVINNQKIANQIRFTM 188 (395) T ss_pred Ccccccc-cccCcc-cceeeecCceeeeEecCccEEEecCCCC-Cccc--cccchhhhHHHHHHHHHHHHHHHHHHHHhh Confidence 2332221 111111 1222222233356789999999986543 3322 3334445545544443333 333455654 Q ss_pred hCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCc--ccCcccccCCCceeeeccCC------hhhHHHH Q lcl|Aclame:pro 299 KGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGD--YTQVPILSGGKFTWIDFKGK------RRDMQFK 370 (945) Q Consensus 299 nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~--Nagkp~VL~~G~k~~pLs~s------p~D~Qfl 370 (945) ++..+++++.... ...++++.++.++.|++..++. +++.++++++|++|++++++ +.|+||+ T Consensus 189 -~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~~q~~ 258 (395) T protein:vir:98 189 -IPPKDKVRERAQE---------NSDGGRQSKSDKDFFKRTVEKIRTESVVGIPVTANTNYEEYGSKNTGAVKSYVDDIK 258 (395) T ss_pred -ccccccccccccc---------cCCcHHHHHHHHHHHHHHHhhhhcCCcceeecCCCceeEecccccccccChhHHHHH Confidence 4556666664432 2335566677777788777663 45557789999999999854 6778999 Q ss_pred HHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeEEEeechhhcC Q lcl|Aclame:pro 371 ELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-NEKDIKLWFKEDDLEK 449 (945) Q Consensus 371 E~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-~~~g~~f~fd~~~l~D 449 (945) +.+++++++||++|||||++|| ++++|.|++..+|+++||.||+.+||++||++|++.. ...+++|+|+.....| T Consensus 259 e~~~~~~~~Ia~~fgVP~~~l~----~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll~~~~~~~g~~f~~~~l~~~d 334 (395) T protein:vir:98 259 KLKDQYMAEFAEMLGIPISLLH----GDIADNQKNYELLLEGPIESLITNIVDGLEYAIFDKSETLQGSFIKVTGLKNYD 334 (395) T ss_pred HHHHHHHHHHHHHhCCCHHHhc----CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCcceeeehhhhccC Confidence 9999999999999999999996 6899999999999999999999999999999887653 3567889999888889 Q ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCC--ccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCC Q lcl|Aclame:pro 450 ERDWWNIIQGQLNTGFRSINEARMEKGLEPVPW--GDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVD 527 (945) Q Consensus 450 ~kerae~~~~~v~~GimT~NEaRe~lGlpPveG--GD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~d 527 (945) .+++++++++++++|++|+||+|+++|+||++| ||.++++.+.+++.+..... + +.+ T Consensus 335 ~~~~~~~~~~~~~~G~~T~NE~R~~~g~~Pi~~~~gD~~~~~~n~~~~~~~gge~--------------~-------~~~ 393 (395) T protein:vir:98 335 LFSISNQADKLISSGFVFIDEVREEIGLPELPDGLGKVLYMTKNYESVLERGGEV--------------D-------EEV 393 (395) T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccceecccccCCC--------------C-------CCC Confidence 999999999999999999999999999999977 99999988776654211000 0 000 Q ss_pred CC Q lcl|Aclame:pro 528 EN 529 (945) Q Consensus 528 d~ 529 (945) ++ T Consensus 394 ~~ 395 (395) T protein:vir:98 394 ET 395 (395) T ss_pred CC Confidence 00 No 86 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=100.00 E-value=3.7e-67 Score=384.77 Aligned_cols=585 Identities=15% Similarity=0.101 Sum_probs=305.9 Q ss_pred hhcccCCCCcchhhhhhhhhccceeeeee-eeeecceeeecccccccccc-ccCCCCC-----cccccCcc----cceec Q lcl|Aclame:pro 34 LSRGKDYPGFKPLLTYRALAWNSTVVYSI-IIFRKNQVLKKEKIIVPYNH-QEPPFKF-----NLFEYSPE----SLMYL 102 (945) Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~n~l~kK~K~i~p~~~-r~pp~~f-----~L~~~s~~----sl~~l 102 (945) +.| -.|.....--| ..|++.-=-|-|..+....+ -.+|..- .-.....+ .+.++ T Consensus 1 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~r~ 65 (648) T protein:vir:79 1 MAR---------------KVWGRGFWSRISLMWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPKMSLVKRI 65 (648) T ss_pred Ccc---------------chhcchhhhhhhhhccCccccccccccccccccCCCccccCCCCcccccccccchhHHHHHh Confidence 111 11221111111 11221111111111100000 0001000 00000000 01000 Q ss_pred -----------cccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHH Q lcl|Aclame:pro 103 -----------PSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFL 171 (945) Q Consensus 103 -----------ps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL 171 (945) ..+..| ...+..+.+.+..++.|++||++||++||++||+++....+ ....++...++ T Consensus 66 g~~~~~~~~g~~~~~ep--p~d~~~l~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~---------~~~~~~~~~ll 134 (648) T protein:vir:79 66 GLAIMDGGGGGRDFEEP--EFDFNEITSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPN---------AVEYIRMRFTL 134 (648) T ss_pred HHHHHhhcCCccccccC--CcCHHHHHHHHhcChHHHHHHHHHHHHHhhCcceEEecCCc---------cchhhHHHHHh Confidence 000001 01123345566689999999999999999999998754322 11234444456 Q ss_pred hccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCe---------------EEEEEEcCCceeEEEEcCCCceEE Q lcl|Aclame:pro 172 ERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGN---------------LVAITPVDGTTIKPILSEDTGIVV 236 (945) Q Consensus 172 ~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~---------------pveL~pLdPs~Vtv~~d~dG~~~~ 236 (945) .+||++||+++||+. ++.+++++||+|++++|+..|. +.++|||+|.+|++..+.+|... T Consensus 135 ~rPn~~~t~~~f~~~----l~~~lll~GNAYveiiRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g~~~- 209 (648) T protein:vir:79 135 MAEATQIPTNQLFIE----IAEDLVKYCNVVIAKSRAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFGMIK- 209 (648) T ss_pred hccCCCCCHHHHHHH----HHHHHHhcCCeEEEEEecCCCccchhhhhhhhccccceeeeEeecCceeEEEEcCCCcee- Confidence 799999999998776 5677789999999999998883 47899999999999998887643 Q ss_pred EEEEeeCC-ceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccc Q lcl|Aclame:pro 237 GYVQEVDG-AIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSY 315 (945) Q Consensus 237 ~Yv~~~dG-~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~ 315 (945) .|++...| +....++++||||++.+.+.+. .||+|||.+++++|+.+.++++++.++|. ||++|+||+.++.+ T Consensus 210 ~Y~y~~~g~~~~~~~~~~dIIHik~~~~~d~---~~GlSpi~~a~~aI~l~~aa~~~~~~fF~-NGa~P~gil~~~~~-- 283 (648) T protein:vir:79 210 GWQQEQEGQDKPQKFKPEDIVHIYYKREKGR---AFGTPWLLPALDDIRALRQVEENVLRLVY-RNLHPLWHVKVGLE-- 283 (648) T ss_pred eeEEEecCCceeEEecCccEEEEccCCCCCC---ceeccHHHHHHHHHHHHHHHHHHHHHHHh-ccCCccEEEEeCCC-- Confidence 46555544 4456789999999986655443 47999999999999999999999999996 57899999987532 Q ss_pred cccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhccccc Q lcl|Aclame:pro 316 KEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILE 395 (945) Q Consensus 316 ~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e 395 (945) ....++.+++++.|++.+.+.+.+...+....+.+.+. .+++|+||++++++++++||++|||||++||+.+ T Consensus 284 -------~~~~e~~k~~~e~~~~~~~~~~i~gg~v~~~~~~i~~~-~s~~dlqfle~rk~~~~eIa~aFgVPP~lLG~~~ 355 (648) T protein:vir:79 284 -------QEGFGAEEGEVDLVRGEVENMDVEGGMVTTERVNISSI-ASNQIIDAKEYLKHFEQRAFTVLGVSELMMGRGG 355 (648) T ss_pred -------ccchHHHHHHHHHHHHhcccccccccccccceeecccc-CCHHHHHHHHHHHHHHHHHHHHhCCCHhHcccCC Confidence 22345556666777766654332222222233333222 3668999999999999999999999999999998 Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcccc-------ccceeEEEeechhhcCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 396 GSNKATAEVMASLTKAKGLEPLMATISKGFDEV----VSEFR-------NEKDIKLWFKEDDLEKERDWWNIIQGQLNTG 464 (945) Q Consensus 396 ~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~k----L~~~~-------~~~g~~f~fd~~~l~D~kerae~~~~~v~~G 464 (945) ++++++.+++...| ..++.|++..++..++.. +.... ....++|+|+.....|.+++++.+.+++++| T Consensus 356 ~ss~stae~~~~~~-~~~i~~l~~~i~~~le~~~~~~ll~e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a~~~~~l~~~G 434 (648) T protein:vir:79 356 TASRSTGDNLSSDF-KDRIKALQKVMATFINEFMVKEILMEGGFDPVLNPDDKVEFRFNEIDMDSKIKLENQAVFLYEHN 434 (648) T ss_pred CccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccceEEEeecccchhhHHHHHHHHHHHHhCC Confidence 88999988776554 667888776665554432 22111 1224677888778889999999999999999 Q ss_pred CcCHHHHHHHHhCCCCCCcccc-ccccccccccccchhhccCCCCcccc--cccCCCCCCCCCCCC--CC--ccccchhH Q lcl|Aclame:pro 465 FRSINEARMEKGLEPVPWGDVP-FSGLRNWKPEDEQAKAQQGAMPPQLA--QAMADQPSQQGGGVD--EN--SSVPSEQK 537 (945) Q Consensus 465 imT~NEaRe~lGlpPveGGD~~-l~~~n~~~ped~~a~~~~~a~~~~~~--~~~~d~~~~~~g~~d--d~--e~~~se~k 537 (945) +||+||+|+++|+||+|+|+.. +...+..+..+..........++... .+.........+..+ ++ ...++..+ T Consensus 435 ilT~NEaR~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~~e~~~~~~~~~~~g~~~~~~~ 514 (648) T protein:vir:79 435 AISEDEMRELIGRDPVDDGEGRAKMHLQMVTIAQATALAALAPTPAGGSSASASGDKKKKATDNKTKPTNQHGTKTSPKK 514 (648) T ss_pred CcCHHHHHHHhCCCCCCCCCCccccccccccchhccccccCCCCCCCCCCCCccccccccccCCCCCCCCCCCcCCCCcc Confidence 9999999999999999988643 33333332222111110000000000 000000000000000 00 00111111 Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHH-hhccCCccccccchHHHHHHHHhhhhHHHHHhhhhhhhcccccCCCcccccch-- Q lcl|Aclame:pro 538 NAGLEVLRNLFKSLDANASENLKQ-VIELTNDDNYLKEKELLTRVLKSVGLDSVSEFIENNSQTDVEVSAKDILSFKY-- 614 (945) Q Consensus 538 ~a~~~~lr~~~k~l~a~~~~~~~~-~~dl~n~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 614 (945) + ..........+ ..+-++..+. -|...-+|.+ .....+=..=..+..| T Consensus 515 ~------------~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 565 (648) T protein:vir:79 515 Q------------TNGRHVRYMQEMLLEYTTLNEA--------------IKALIERYYQ---YGSKEHLKSINGSLMYTE 565 (648) T ss_pred c------------cchhhhhhhhhhhhcchhhhHH--------------HhhHHHHHHH---HhHHHHHHhhhhhheecc Confidence 0 00000000010 1112222222 2222233333 1111111111122222 Q ss_pred hhHHHHHHhhccchhhhhhhhccccc-chhhhhhhhhhccccccccceeeecCccc--eeEEecccc-ccchhhHHHHHH Q lcl|Aclame:pro 615 NSLVEDETIYATEKDIVLRLLGKNSL-DHRETFGLIATHFDCHTVPKVEFYSDKDK--RYVFANLSV-CSPINSVEKFTR 690 (945) Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~ 690 (945) .+.+++|+-|+.|.--- +--| -||-|=.|- .--..|.-++|=-..-.+ .-||..|.- .-|| +-|.|.- T Consensus 566 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 637 (648) T protein:vir:79 566 GRLLELTTQYWGEEVTE-----KVRIPFHRMTENLR--EEVMSTIDKVEGVAEASDIAQAVFDVFTDRLGHI-SNEAFAI 637 (648) T ss_pred chhHHHHHHHhhhhhhc-----eeeeeHHHHHHHHH--HHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhhhh-hhhhHHH Confidence 77888888888754110 0001 011111100 000011111110000000 001111111 1122 2334433 Q ss_pred HHHHhhcccCC Q lcl|Aclame:pro 691 LDELLSCTTKK 701 (945) Q Consensus 691 ~~~~~~~~~~~ 701 (945) -..|..+.... T Consensus 638 ~~~~~~~~~~~ 648 (648) T protein:vir:79 638 SESLAEVNGDG 648 (648) T ss_pred hhhHhhhcCCC Confidence 22222222222 No 87 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=100.00 E-value=1.4e-68 Score=392.66 Aligned_cols=367 Identities=12% Similarity=0.104 Sum_probs=247.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-||.|-+-|.+-+. .+++.. ....+.+..++++++|++||++||++||++ T Consensus 1 M~~f~k~~~~~~~~~----------------------------~~~~~~-~~~~~~~~~~~~~~~v~~~v~~ia~~iA~l 51 (378) T protein:vir:85 1 MNLFGKVVSFSRGKL----------------------------NNDTQR-VTAWQNEAVEYTSAFVTNIHNKIANEITKV 51 (378) T ss_pred Cchhhhhhhhhhccc----------------------------ccCCcc-eeeeeccchhhhhHHHHHHHHHHHHhHhhC Confidence 223332221111100 000000 001222456678899999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEE-ecCCCeEEEEEEc Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKI-RDEQGNLVAITPV 219 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~ii-rd~~G~pveL~pL 219 (945) ||++|++++++.... ......+||+++||+ +||++||+++||+. ++.++++.|++|++++ ++..|++..+++ T Consensus 52 p~~~~~~~~~~~~~~-~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~lll~Gnayi~~i~~~~~g~~~~~~~- 125 (378) T protein:vir:85 52 EFNHVKYKKSDVGSD-TLISMAGSDLDEVLNWSYKGEHNSMEFWQK----VIKKLLCTRYVDLYPIFDSETGELLDLLF- 125 (378) T ss_pred ceeEEEEeccccccc-cccccccchHHHHHhccCCCCCCHHHHHHH----HHHHHhhcCCeEEEEeecCCCceEEEEEe- Confidence 999999887654321 123467899999997 89999999999876 5667789999998753 344444433322 Q ss_pred CCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 220 DGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRK 299 (945) Q Consensus 220 dPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~n 299 (945) .+++ ..+.++|+||++.....+. +.+++..+.+.+. ..+ + T Consensus 126 ----------------------~~~~--~~~~~~dvih~~~~~~~~~-----~~~~~~~a~~~~~----------~~~-~ 165 (378) T protein:vir:85 126 ----------------------ANDK--KEYKPEELVRLVSPFYINE-----DTSILDNALASIQ----------TKL-E 165 (378) T ss_pred ----------------------cCCC--EEEcccceEEEecCcCccc-----hhhHHHHHHHHHH----------HHH-h Confidence 1222 3466789999975332111 2334444433322 223 3 Q ss_pred CCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 300 GGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARK 379 (945) Q Consensus 300 nGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ee 379 (945) +| .|+|+|+.++.. .....+++++++++.|++..+|.++|+++++++|++|+++++++.++|+ +.+++++++ T Consensus 166 ~~-~~~g~l~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~ 237 (378) T protein:vir:85 166 QG-KLRGLLKINAFL------DIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIELIKSE 237 (378) T ss_pred cC-CcceEEEeCCcC------CHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEeccCChhhhhH-HHHHHHHHH Confidence 45 578999875321 1222334445555555556677889999999999999999999999996 678999999 Q ss_pred HHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-ce--------eEEEeechhhcCH Q lcl|Aclame:pro 380 ICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNE-KD--------IKLWFKEDDLEKE 450 (945) Q Consensus 380 IA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~-~g--------~~f~fd~~~l~D~ 450 (945) ||++|||||++|+ .+++|++..+|+++||.||+++||++|+++|++..++ .+ +.|+++.....|. T Consensus 238 Ia~~fgVPp~~l~------~s~~e~~~~~f~~~tL~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~~l~~~d~ 311 (378) T protein:vir:85 238 LLTGYFMNENILL------GTATQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) T ss_pred HHHHhCCCHHHhc------CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhccccceeeecchhhhhcCH Confidence 9999999999994 3556899999999999999999999999988765322 11 2344445566799 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 451 RDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 451 kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +++++++.+++++|++|+||+|+++|+||+||||.++++.|.++..+.. ..+. . ..+.+++..++++ T Consensus 312 ~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~gGD~~~~~~N~~~~~~~~-~~~~-~-----------~~~~~~~~e~~n~ 378 (378) T protein:vir:85 312 KELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDIYIANLNAVAVKNLS-DLQG-S-----------RKDVASTDETNNQ 378 (378) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccccccch-hhcC-c-----------cCCCCCCCCCCCC Confidence 9999999999999999999999999999999999999998876544321 1110 0 0011111122222 No 88 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=100.00 E-value=5.9e-68 Score=389.17 Aligned_cols=367 Identities=11% Similarity=0.095 Sum_probs=252.4 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .=||.|=+=|+.- ...++. ..+...+.+..++++++|++||++||++||++ T Consensus 1 M~if~~~~~~~~~----------------------------~~~~~~-~~~~~~~~~~~~~~~~~v~~~v~~Ia~~iA~l 51 (378) T protein:vir:94 1 MNLFGKVVSFSRG----------------------------KLNNDT-QRVTAWQNEAVEYTSAFVTNIHNKIANEITKV 51 (378) T ss_pred CchhHHhHhhhhc----------------------------ccccCc-ceeeeeecchhhhhhHHHHHHHHHHHHhHhhC Confidence 2233322111000 000000 00001222345677889999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEE-EecCCCeEEEEEEc Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVK-IRDEQGNLVAITPV 219 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~i-ird~~G~pveL~pL 219 (945) |+++|++++.+.... ......+||+++||+ +|||+||+++||+. ++.++++.|++|+++ .++..|++..+++. T Consensus 52 p~~~~~~~~~~~~~~-~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~----~~~~lll~Gnayi~~i~~~~~g~~~~~~~~ 126 (378) T protein:vir:94 52 EFNHVKYKKSDVGSD-TLISMAGSDLDEVLNWSSKGERNSMEFWQK----VIKKLLTTRYIDLYPIFDSETGELLDLLFA 126 (378) T ss_pred ceeeeeecccccccc-cccccccchHHHHHhhcCCCCCCHHHHHHH----HHHHHhhcCCeEEEEEeeCCCCcEEEEEEe Confidence 999998876543221 223457899999997 89999999999876 567778999999874 34455555433321 Q ss_pred CCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 220 DGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRK 299 (945) Q Consensus 220 dPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~n 299 (945) .++ ..++++||+|++.....+ -+.+++..+.+.+.. .+. T Consensus 127 -----------------------~~~--~~~~~~dvih~~~~~~~~-----~~~~~~~~~~~~~~~----------~~~- 165 (378) T protein:vir:94 127 -----------------------NDK--KEYKPEELVRLTSPFYIN-----EDTSILDNALASIQT----------KLE- 165 (378) T ss_pred -----------------------cCc--EEechhceeeecCcCCcc-----cchhHHHHHHHHHHH----------HHh- Confidence 122 346789999997432211 244556655544332 222 Q ss_pred CCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 300 GGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARK 379 (945) Q Consensus 300 nGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~ee 379 (945) +| .|+|+|+.+... +.+..+++++++++.|++.++|.++++++++++|++|+++++++.++|+ +.+++++++ T Consensus 166 ~~-~~~g~l~~~~~l------~~~~~~~~~e~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~ 237 (378) T protein:vir:94 166 QG-KLRGLLKINAFL------DIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSE 237 (378) T ss_pred hC-CcccceeeCCcC------CHHHHHHHHHHHHHHHHHhhcccccccceeccCCceEEEccCChHHhhH-HHHHHHHHH Confidence 33 468898875422 2233456677778888888888889999999999999999999999996 778999999 Q ss_pred HHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-c--------eeEEEeechhhcCH Q lcl|Aclame:pro 380 ICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNE-K--------DIKLWFKEDDLEKE 450 (945) Q Consensus 380 IA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~-~--------g~~f~fd~~~l~D~ 450 (945) ||++|||||++|+ + +..|++..+|+++||.||+++||++||++|++..+. . .+.|+++...+.|. T Consensus 238 Ia~~fgvPp~~l~----g--~~~e~~~~~f~~~tl~P~~~~ie~~l~~~Ll~~~e~~~g~~~~~~~~~~f~~~~l~~~d~ 311 (378) T protein:vir:94 238 LLTGYFMNENILL----G--TATQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) T ss_pred HHHHhCCCHHHhc----C--CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhhcccceeEeecchhhhcCH Confidence 9999999999994 2 334788999999999999999999999988765322 1 13455566677799 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 451 RDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 451 kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +++++++.+++++|++|+||+|+++|+||+||||.++++.+.++....... +.+ ..+..+++.++++ T Consensus 312 ~~~~e~~~~~~~~G~~t~NE~R~~~g~~p~~ggd~~~~~~n~~~~~~~~~~-~~~------------~~~~~~~~e~~n~ 378 (378) T protein:vir:94 312 KELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDL-QGN------------RKDVTSTDETNNQ 378 (378) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeecccccchhcchhc-ccc------------cCCCCCCCCCCCC Confidence 999999999999999999999999999999999999999887654432211 110 0011111222222 No 89 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=100.00 E-value=6.7e-61 Score=350.49 Aligned_cols=276 Identities=11% Similarity=0.108 Sum_probs=239.6 Q ss_pred hccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEE Q lcl|Aclame:pro 138 LTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAI 216 (945) Q Consensus 138 IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL 216 (945) ||++||++|++++. .+|+++++|. +|||+||+++||+. ++.++++.|++|++++++..|++++| T Consensus 1 ia~l~~~~~~~~~~-----------~~~~l~~lL~~~PN~~~t~~~f~~~----~~~~ll~~Gna~~~i~r~~~G~~~~l 65 (278) T protein:vir:78 1 MASLPLKMYEDYKV-----------VNTEVSDLLTVSPNNSLSSFDFINQ----IETIRNEKGNAYVLIERDIYHQPSKL 65 (278) T ss_pred CccceeEEEecCcc-----------cccHHHHHHHhcCCCCCCHHHHHHH----HHHHHhhcCCEEEEEEECCCCcEEEE Confidence 99999999975433 3589999986 89999999998765 56778899999999999999999999 Q ss_pred EEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 217 TPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDY 296 (945) Q Consensus 217 ~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~ 296 (945) +|++|++|++..+.+|...+ |.+...++....++++||||++...+.+ ..+|+||+.++..++..+.++++++... T Consensus 66 ~~l~~~~v~v~~~~~~~~~~-y~~~~~~g~~~~~~~~evih~~~~~~~~---~~~G~s~~~~~~~~i~~~~~~~~~~~~~ 141 (278) T protein:vir:78 66 FLLNPDVVEMLIENQSRELY-YSIHAATGNKLIVHNMDMLHFKHIVASN---MVQGISPIDVLKNTTDFDNAVRTFNLTE 141 (278) T ss_pred EEECCceeEEEEcCCCceEE-EEEEcCCceEEEEccccEEEECCCCCCC---CeeeccHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999988877654 4444555567889999999998654332 2479999999999999999999987655 Q ss_pred HHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHH Q lcl|Aclame:pro 297 YRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFV 376 (945) Q Consensus 297 F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~ 376 (945) + +..|++++..+ +.+++++.+++++.|++.++ ++|+++++++|++|+++++++.|+||+++++++ T Consensus 142 ~---~~~~~~i~~~~----------~~l~~e~~~~~~~~~~~~~~--~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~ 206 (278) T protein:vir:78 142 M---QKPDSFMLKYG----------SNVGKEKRQQVLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLT 206 (278) T ss_pred h---cCCCcEEEEeC----------CCCCHHHHHHHHHHHHHHhc--cCCCceecCCCceEEEccCChhHHHHHHHHHHH Confidence 4 44578888763 56899999999999998764 678899999999999999999999999999999 Q ss_pred HHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccceeEEEeechhh Q lcl|Aclame:pro 377 ARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-NEKDIKLWFKEDDL 447 (945) Q Consensus 377 ~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-~~~g~~f~fd~~~l 447 (945) +++||++|||||+++|..+++|++|++++..+|++.||+|+++.|++++|++|++.. ...+++|+||...+ T Consensus 207 ~~~Ia~~fgVpp~~lg~~~~~~~sn~~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~~g~~~~f~~~~l 278 (278) T protein:vir:78 207 RERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKIGILNLTLNLI 278 (278) T ss_pred HHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhcCCceEEEecccC Confidence 999999999999999999999999999999999999999999999999999887654 34578899988877 No 90 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=100.00 E-value=9.4e-56 Score=322.27 Aligned_cols=349 Identities=12% Similarity=0.075 Sum_probs=236.2 Q ss_pred eeecce-eeeccccccccccccCCCCCccccc-CcccceeccccCCcccch-------hhhhhHH-hhhccHHHHHHHHH Q lcl|Aclame:pro 64 IFRKNQ-VLKKEKIIVPYNHQEPPFKFNLFEY-SPESLMYLPSISDPDAFF-------LINLFRK-YRFNNDSKLIKVSE 133 (945) Q Consensus 64 ~~k~n~-l~kK~K~i~p~~~r~pp~~f~L~~~-s~~sl~~lps~s~p~~~~-------~~~v~~~-~Am~nsaV~aCV~i 133 (945) .=||++ =+++.....+ +..+...+.... +..+....-++.+|..+. ...+... .....|.-+.|+.. T Consensus 1 m~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~la~ 77 (368) T protein:vir:79 1 MSRNKTRRAARAASAHV---RTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMRMGQWYEPPMPWDGLAR 77 (368) T ss_pred CCccccccchhccCccc---ccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHhccchhccCcCHHHHHH Confidence 112211 0110000000 000000000000 000000011112221110 0111111 12223333344333 Q ss_pred HHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeE Q lcl|Aclame:pro 134 IPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNL 213 (945) Q Consensus 134 IA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~p 213 (945) +.+.-+ .+ ...+...|+++.++.+|||+||+++||+ ++.+++++||+|++++++..|++ T Consensus 78 ~~~~~~---~h-------------~~~~~~~~n~l~l~~~Pn~~~t~~~f~~-----l~~d~ll~Gnay~~~~r~~~G~~ 136 (368) T protein:vir:79 78 SFRAAA---HH-------------SSAVYVKRNILVSTFIPHPLLSRATFER-----LVLDWQVFGNAYLERRENVLGGT 136 (368) T ss_pred HHhhcc---cc-------------chhhhhhcchhhhhcCCCcCCCHHHHHH-----HHHHHhhcCCeEEEEEEcCCCCE Confidence 322211 11 1224456899999999999999999854 45688999999999999999999 Q ss_pred EEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 214 VAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGN 293 (945) Q Consensus 214 veL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~ 293 (945) ++|+|++|.+|++..+.+ . |++...++....++++||||++.. .+.. ..||+||+.+++.++..+.++++++ T Consensus 137 ~~L~~l~~~~v~~~~~~~--~---~~~~~~~~~~~~~~~~dIihir~~-~~~~--~~yGlsp~~~a~~si~l~~aa~~~~ 208 (368) T protein:vir:79 137 IRLDTPLAKYVRRGLDLN--T---YFFVQNWQQPYTFAAGSVFHLQEP-DINQ--EVYGLPEYLSALNATWLNESATLFR 208 (368) T ss_pred EEEEEeCcccceeeccCC--E---EEEEecCCeEEEEccccEEEecCC-CCCC--CcccccHHHHHHHHHHHHHHHHHHH Confidence 999999999998765543 2 233445666778999999999743 3322 3489999999999999999999999 Q ss_pred HHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc-----CCCceeeeccCChhhHH Q lcl|Aclame:pro 294 LDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS-----GGKFTWIDFKGKRRDMQ 368 (945) Q Consensus 294 a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL-----~~G~k~~pLs~sp~D~Q 368 (945) +++|. ||++|+|||..++ +.+++++.++++++|++..+++|+|+++|+ ++|++|+|++++++|+| T Consensus 209 ~~~~~-NGa~~~gil~~~~---------~~l~~e~~~~lk~~~~~~~G~~N~g~~~vl~~~g~~~g~~~~pls~~~~d~q 278 (368) T protein:vir:79 209 RRYYK-NGSHAGFILYMTD---------AAQKQEDVDTLREAMKSAKGPGNFRNLFMYAPNGKKDGIQLLPVSEVAAKDE 278 (368) T ss_pred HHHHh-ccCCCceEEEeCC---------CCCCHHHHHHHHHHHHHhcCCcccCceeEecCCCCccceeEEEcCCCHHHHH Confidence 99995 6889999998752 468999999999999987666899999998 68999999999999999 Q ss_pred HHHHHHHHHHHHHHHhcCChhhcccccCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechh Q lcl|Aclame:pro 369 FKELAEFVARKICAVYQVSPQDVGILEGS--NKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDD 446 (945) Q Consensus 369 flE~rk~~~eeIA~aFGVPP~lLG~~e~g--T~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~ 446 (945) |++++++++++||++|||||.++|+.+++ +++|+|++.+.|++++|.|++++|+ ++|.+|.+. .++|+... T Consensus 279 f~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~ie-~ln~~l~~e------~~rF~~~~ 351 (368) T protein:vir:79 279 FWNIKNVTRDDQLAAHRVPPQLMGIIPNNTGGFGDVEKAAMVFARNEVKPLQDRLL-AINDWIGDE------VVRFAPYA 351 (368) T ss_pred HHHHHHHhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHH-HHHhccCcc------eeeechhH Confidence 99999999999999999999999997764 4899999999999999999999998 577776432 35565544 Q ss_pred --hcCHHHHHHHHHHHHhC Q lcl|Aclame:pro 447 --LEKERDWWNIIQGQLNT 463 (945) Q Consensus 447 --l~D~kerae~~~~~v~~ 463 (945) ..|.++++... ...+ T Consensus 352 l~~~D~~a~a~~~--~rsa 368 (368) T protein:vir:79 352 LGGHDQPAAAPGG--QRSA 368 (368) T ss_pred hhcccccccCCcc--cccC Confidence 44666665411 1111 No 91 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=100.00 E-value=4.7e-55 Score=318.44 Aligned_cols=335 Identities=13% Similarity=0.132 Sum_probs=237.2 Q ss_pred eecceeeeccccccccccccCCCCCcccccCccccee-ccccCCcccchhhhhhHHhhhccHHHHHHHHHH--HHhhccC Q lcl|Aclame:pro 65 FRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMY-LPSISDPDAFFLINLFRKYRFNNDSKLIKVSEI--PKKLTSK 141 (945) Q Consensus 65 ~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~-lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iI--A~~IAsL 141 (945) -|+|+ +.+...+..........|+..+..+.++.. +..|.+.++ . ...-|.-+..+-.+ |+.-.+- T Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~----~-----~~epp~~~~~la~l~~~~~~h~~ 69 (345) T protein:vir:37 1 MKTNV--KTDNKKGIVIAPINDRTFSLNEISASPALDYVGIGFDENY----N-----CYLPPVNRHALAKLPHQNAQHGG 69 (345) T ss_pred CCCCc--cccchhhcccCcceeEEeecCCcccccchhhhhhhhcCCc----c-----ccCCCCCHHHHHHHhhccccccc Confidence 55555 233332222222222223333322222111 011110000 0 01111111121111 1111111 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) .++.+ +.+...+-+|||+||+++|++ ++.+++++||+|++++|+..|+|++|+|++| T Consensus 70 ~i~~k------------------~n~l~~~~~Pn~~lt~~~f~~-----~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~ 126 (345) T protein:vir:37 70 ILHSR------------------ANMVSSLYEGGKALSRMDMRA-----LCLNLIQFGDVGLLKVRNGFGQVVRLVPLSS 126 (345) T ss_pred ceeee------------------chHHHhhccCCCCCCHHHHHH-----HHHHHHhcCCeEEEEEEcCCCcEEEEEEEcC Confidence 22221 222223337999999999864 4568889999999999999999999999999 Q ss_pred ceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnG 301 (945) .+|++..+.+....+.+.....++....++++||||++.. ++.. ..||+||+..+++++..+.++.+|++++|. || T Consensus 127 ~~vr~~~d~~~~~~~~~~~~~~~g~~~~~~~~dVihir~~-~~~~--~~~Gls~~~~a~~si~l~~~a~~~~~~~f~-NG 202 (345) T protein:vir:37 127 LYLRVRKDGGYSYLMKKSLYDTAQEIYRYDAKDIIFIKLY-DPMQ--QVYGSPDYVGGIQSALLNSDATVFRRRYFS-NG 202 (345) T ss_pred ceeEEEEeCCeeEEEEEeEecCCceEEEEccccEEEecCC-CCCC--CcccccHHHHHHHHHHHHHHHHHHHHHHHh-cc Confidence 9999888766554444544555667788999999999743 3222 348999999999999999999999999995 68 Q ss_pred CCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc-----CCCceeeeccCChhhHHHHHHHHHH Q lcl|Aclame:pro 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS-----GGKFTWIDFKGKRRDMQFKELAEFV 376 (945) Q Consensus 302 a~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL-----~~G~k~~pLs~sp~D~QflE~rk~~ 376 (945) ++|++||.+++ +.+++++.++++++|++..+++|.++++++ ++|++++|++++++|+||+++++++ T Consensus 203 ~~p~~Il~~~d---------~~l~~e~~~~lk~~~~~~~g~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~ 273 (345) T protein:vir:37 203 AHMGFILYSTD---------PDLTEEMEEEIARKISESKGVGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNIS 273 (345) T ss_pred CCcceEEEecC---------CCCCHHHHHHHHHHHHHhcCcccccceEEEcCCCcccceEEEEccCChhHHHHHHHHHHh Confidence 89999998752 468999999999999997666888888877 6899999999999999999999999 Q ss_pred HHHHHHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcC Q lcl|Aclame:pro 377 ARKICAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEK 449 (945) Q Consensus 377 ~eeIA~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D 449 (945) +++||++|||||.++|+.+. ++++|+|++.+.|++++|.|++++|++++|+.+. ...+..+.|+..++.. T Consensus 274 ~~dIa~a~~VPp~llGi~~~~~~~~~~~e~~~~~f~~~~l~P~~~~ie~~ln~~~~---~~~~~~i~F~~~~L~~ 345 (345) T protein:vir:37 274 AQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQDPE---IKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHhCCCHHHhCccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---CCCcceEEecchhhcC Confidence 99999999999999998665 5689999999999999999999999999997542 1234668888766655 No 92 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=100.00 E-value=1.4e-55 Score=321.25 Aligned_cols=329 Identities=13% Similarity=0.082 Sum_probs=229.7 Q ss_pred eecccccccc-ccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC---ceEEE Q lcl|Aclame:pro 71 LKKEKIIVPY-NHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK---ELEIY 146 (945) Q Consensus 71 ~kK~K~i~p~-~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL---P~~Vy 146 (945) ..+...-... ....+...|+. ...|+ ..+....++.|+.+..+..+.. |+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~----------------------~~~~~~~~~~~~~~~~~~~~~~~epp~~~~ 57 (348) T protein:vir:26 1 MTEQLIHSHTTDGTESKSVYSF-DPNPE----------------------PVDTNSWMTRYCELFYNDFDDYWEPPISLK 57 (348) T ss_pred CCccccchhhccccCCceEEEe-cCCCe----------------------eecCcchHHHHHHHHhcCCCccccCCCCHH Confidence 1111000000 00011111111 00111 1123344566666665544432 32210 Q ss_pred EeccCcccccccchhhccc--HHH---H-HHh--ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEE Q lcl|Aclame:pro 147 KHIEDKHVNYYLKRIRDAR--NIL---E-FLE--RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITP 218 (945) Q Consensus 147 Rrtedg~ee~~~r~~a~dh--pL~---~-LL~--rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~p 218 (945) .-.+ .. +....| +++ . +.. +|||+||+.+|++ ++.+++++||+|++++|+..|+|++|+| T Consensus 58 ~La~------l~-~~n~~h~~~i~~k~N~l~~~~~Pn~~~t~~~f~~-----~~~d~ll~Gnay~~~~rn~~G~~~~L~~ 125 (348) T protein:vir:26 58 GLAE------IA-NANGYHGSLLKARANYVAGRFMNGGGLPMYKMNS-----ACWDYFGLGMSAFVKIRSYLKNVIALEP 125 (348) T ss_pred HHHH------HH-hhhhhhhhhHhhhhhHHhhcccCCCCCCHHHHHH-----HHHHHHhcCCeEEEEEEcCCCcEEEEEE Confidence 0000 00 000001 011 1 222 6999999999864 4568899999999999999999999999 Q ss_pred cCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 219 VDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYR 298 (945) Q Consensus 219 LdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~ 298 (945) ++|.+|++..+. . + |.+ ..++....|+++||+|++. +++. ...||+||+..+++++..+.++..+++++|. T Consensus 126 l~~~~v~~~~d~--~-~--~~~-~~~g~~~~f~~~dIiHir~-~~~~--~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~ 196 (348) T protein:vir:26 126 LPMVHMRKRKNG--D-F--VQL-LRNNEQKVFKAKDVIFIPQ-YDPQ--QQIYGLPDYLGSIQSSLLNRDATLFRRRYYL 196 (348) T ss_pred ecCceeEeeecC--c-E--EEE-EecCeEEEEcCccEEEEcC-CCCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 999999886543 2 1 222 3345567899999999974 3332 2347999999999999999999999999995 Q ss_pred hCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc-----CCCceeeeccCChhhHHHHHHH Q lcl|Aclame:pro 299 KGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS-----GGKFTWIDFKGKRRDMQFKELA 373 (945) Q Consensus 299 nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL-----~~G~k~~pLs~sp~D~QflE~r 373 (945) ||++|++||.+++ +.+++++.+++|++|++..+++|+++++++ ++|++++|++++++|+||++.+ T Consensus 197 -NGa~pg~Il~~~~---------~~ls~e~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k 266 (348) T protein:vir:26 197 -NGAHMGFIFYATD---------PNLSEADEKALKEKIASSKGIGNFRSMFVNIPNGKEKGIQLIPVGDIATKDEFERIK 266 (348) T ss_pred -ccCCCceEEEecC---------CCCCHHHHHHHHHHHHHhcCcccccceeEEcCCCCccceeEEEccCChhHHHHHHHH Confidence 6889999998753 468999999999999998777899999988 7899999999999999999999 Q ss_pred HHHHHHHHHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHH Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKER 451 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~k 451 (945) ++++++||++|||||+++|+.+. ++++|+|++.+.|++++|.|++++||+++|++|... .+++++|+.....+.. T Consensus 267 ~~t~~dIa~af~VPp~llGi~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~---~~~~~~fdl~~~~e~~ 343 (348) T protein:vir:26 267 NITAQDIFVGHRFPAGMGGMLPQQGANVPDPLKVSQVYDFYEVIPVCKRFMDAVNNDPEIP---DNLKLKFNLNPGVESA 343 (348) T ss_pred HhhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC---CccEEEEecCcccccc Confidence 99999999999999999998644 688999999999999999999999999999887532 2345556544333433 Q ss_pred HHHHH Q lcl|Aclame:pro 452 DWWNI 456 (945) Q Consensus 452 erae~ 456 (945) +++++ T Consensus 344 ~~~a~ 348 (348) T protein:vir:26 344 NGSAV 348 (348) T ss_pred hhhcC Confidence 33333 No 93 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=100.00 E-value=1.6e-54 Score=315.53 Aligned_cols=334 Identities=12% Similarity=0.118 Sum_probs=231.1 Q ss_pred eecceeeeccccccccccccCCCCCcccccCccccee-ccccCCcc-cchhhhhhHHhhhccHHHHHHHHHH--HHhhcc Q lcl|Aclame:pro 65 FRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMY-LPSISDPD-AFFLINLFRKYRFNNDSKLIKVSEI--PKKLTS 140 (945) Q Consensus 65 ~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~-lps~s~p~-~~~~~~v~~~~Am~nsaV~aCV~iI--A~~IAs 140 (945) -|||+ +.+...+..........|+..+..+..+.. ...|...+ .+. .-|.=+...-.+ ++...+ T Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~----------epp~~~~~la~~~~~~~~h~ 68 (345) T protein:vir:37 1 MKTNV--KTDNKKGIVIAPINDRTFSLSEITASPALDYVGIGFDENYNCY----------LPPVNRHALAKLPHQNAQHG 68 (345) T ss_pred CCccc--cccchhhhcCCCceEEEeecCCcccchhhcccceeeecCCccc----------cCCCCHHHHHHHhhcchhhc Confidence 45554 333222222111111123322222222111 11111000 010 001001111111 111111 Q ss_pred CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 141 KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 141 LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) -+++.++ +-+. ..-+|||+||+.+|++ ++.+++++||+|++++|+..|++++|+|++ T Consensus 69 ~~i~~k~-----------------n~l~-~~~~Pn~~~t~~~f~~-----~v~d~ll~Gnay~~i~rn~~G~~~~L~pl~ 125 (345) T protein:vir:37 69 GILHSRA-----------------NMVS-ATYEGGKALSKMEMRA-----LCLNLIQFGDVGLLKVRNGFGQVVRLVPLS 125 (345) T ss_pred chhhhhh-----------------hHHh-hccCCCCCCCHHHHHH-----HHHHHHhcCCeEEEEEECCCCCEEEEEEec Confidence 1111110 0111 1117999999999864 456888999999999999999999999999 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) |.+|++..+.+....+.+.....++....++++||||++.. ++. ...+|+||+..+++++..+.+++++++++|. | T Consensus 126 ~~~vr~~~d~~~~~~~~~~~~~~~g~~~~~~~~eViHir~~-~~~--~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f~-N 201 (345) T protein:vir:37 126 SLYLRVHKDGGYSYLMKKSLYDTAQEIYRYDAKDIIFIKLY-DPM--QQVYGSPDYVGGIQSALLNSDATVFRRRYFS-N 201 (345) T ss_pred CceeEEeecCCeeEEEeeeeeccCceEEEEccccEEEEcCC-CCC--CCcccchHHHHHHHHHHHHHHHHHHHHHHHh-c Confidence 99999877665443333334444566778999999999743 222 2347999999999999999999999999995 6 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc-----CCCceeeeccCChhhHHHHHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS-----GGKFTWIDFKGKRRDMQFKELAEF 375 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL-----~~G~k~~pLs~sp~D~QflE~rk~ 375 (945) |++|++||.+++ +.+++++.++++++|++.++|+|.+.++++ ++|++++|+++++.|+||++++++ T Consensus 202 Ga~~~~Il~~t~---------~~l~~e~~~~lk~~~~~~~g~~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~ 272 (345) T protein:vir:37 202 GAHMGFILYSTD---------PDLTEEMEEEIARKISESKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNI 272 (345) T ss_pred cCCcceEEEeCC---------CCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceeEEEccCChhHHHHHHHHHH Confidence 789999998753 468999999999999999877777776665 568999999999999999999999 Q ss_pred HHHHHHHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcC Q lcl|Aclame:pro 376 VARKICAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEK 449 (945) Q Consensus 376 ~~eeIA~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D 449 (945) ++++||++|||||.++|+.++ ++++|+|++.+.|++++|.||+++|++++|+.+. ...++.++|+...+.. T Consensus 273 ~~~dI~~a~~VPp~liGi~~~~t~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~~e---~~~~~~i~F~~~~l~k 345 (345) T protein:vir:37 273 SAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQDPE---IKNLLKIKFREQNFAK 345 (345) T ss_pred hHHHHHHHhCCCHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---cCCcceEEECchhhcC Confidence 999999999999999998765 5689999999999999999999999999998531 2245778888777766 No 94 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=100.00 E-value=4.5e-54 Score=313.07 Aligned_cols=329 Identities=16% Similarity=0.151 Sum_probs=232.1 Q ss_pred eecccc-ccccccccCC----CCCcccccCcccceeccccCCcccchhhhhhHHhh-----hccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 71 LKKEKI-IVPYNHQEPP----FKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYR-----FNNDSKLIKVSEIPKKLTS 140 (945) Q Consensus 71 ~kK~K~-i~p~~~r~pp----~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~A-----m~nsaV~aCV~iIA~~IAs 140 (945) .+|.+. ..+..++..+ ..|. .+.|++.. ..... ....+-.+ ..-|.-+.. +|+.... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~-------~~~~~-~~~~~~~~~~~~~~~pp~~~~~---la~l~~~ 67 (346) T protein:vir:10 1 MKKQLRKNLTQNDRLQPQAQTEIFS--FGDPIPVL-------DRADI-LNYLECSAMYEKWYNPPMSFDG---LAKSLRS 67 (346) T ss_pred CCcccCCCCCcccccccccCeEEEe--cCCcceec-------CchhH-HHHHHHhhcCCceEecCCCHHH---HHHHHHh Confidence 222221 1111111111 0111 11122111 00000 00000000 000111112 2222222 Q ss_pred CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 141 KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 141 LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) .|.| +..-.+..|.+..++.+|||+||+.+||+ ++.+++++||+|++++|+..|++++|+|++ T Consensus 68 ~~~h------------~~~i~~k~n~l~~l~~~Pn~~~t~~~f~~-----~~~d~ll~Gnay~~i~r~~~G~~~~L~pl~ 130 (346) T protein:vir:10 68 STHH------------ESAIITKANILLSTCEVDSRYLSRRDLSS-----FVKDYLVFGNAYFEVVRNRLGQVQRIESPL 130 (346) T ss_pred hhhc------------chhhhhhhhhHHHHHhCCCCCCCHHHHHH-----HHHHHHhcCCeEEEEEEcCCCcEEEEEEec Confidence 2221 11223456889999999999999999864 346789999999999999999999999999 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) |.+|++..+.++. .|+....++....++++||||++... + ....||+||+..+++++..+.+++++++++|. | T Consensus 131 ~~~v~~~~~~~~~---~~~~~~~~g~~~~~~~~dIih~r~~~-~--~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~-N 203 (346) T protein:vir:10 131 AKYVRKGLEAGQF---YYVPQRFDHQEHEFAKGSIYHLLEPD-I--NQDIYGLPQYLSALQSAWLNESATLFRRKYFL-N 203 (346) T ss_pred CCceEEEEcCCeE---EEEEEccCCeEEEEecccEEEecCCC-C--CCCeeeccHHHHHHHHHHHHHHHHHHHHHHHh-c Confidence 9999987776543 23333445567789999999997442 2 22348999999999999999999999999995 6 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccC-----CCceeeeccCChhhHHHHHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG-----GKFTWIDFKGKRRDMQFKELAEF 375 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~-----~G~k~~pLs~sp~D~QflE~rk~ 375 (945) |++|++||.+++ +.+++++.++++++|++.++++|+|+++++. .|++++|+++++.|+||++++++ T Consensus 204 G~~~~~il~~~d---------~~l~~e~~~~i~~~~~~~~g~~n~~~~~vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~ 274 (346) T protein:vir:10 204 GAHAGFVFYMSD---------ASQKQEDVENIRQQLKQSKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNV 274 (346) T ss_pred cCCCceEEEeCC---------CCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceeEEecCCChhHHHHHHHHHH Confidence 789999998753 4689999999999999988778999999884 47899999999999999999999 Q ss_pred HHHHHHHHhcCChhhcccccCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHH Q lcl|Aclame:pro 376 VARKICAVYQVSPQDVGILEGS--NKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERD 452 (945) Q Consensus 376 ~~eeIA~aFGVPP~lLG~~e~g--T~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~ke 452 (945) ++++||++|||||.++|+.+++ +++|+|++.+.|++++|+|++++||+ +|.+|... .++|+...+.+.++ T Consensus 275 ~~~~I~~af~VPp~llG~~~~~~~~~s~~e~~~~~f~~~~l~P~~~~iee-~n~~L~~e------~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 275 SRDDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQERLKE-FNQWLGQE------VIKFKPSKLLQRTQ 346 (346) T ss_pred hHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcccc------eeeechhhhcccCC Confidence 9999999999999999987664 58999999999999999999999986 66655321 36677666654333 No 95 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=100.00 E-value=6.6e-54 Score=312.13 Aligned_cols=323 Identities=12% Similarity=0.111 Sum_probs=233.6 Q ss_pred eecccccccccc-ccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhcc---CceEEE Q lcl|Aclame:pro 71 LKKEKIIVPYNH-QEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTS---KELEIY 146 (945) Q Consensus 71 ~kK~K~i~p~~~-r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAs---LP~~Vy 146 (945) .+|+|.-....+ ..+...| ++.+|. ++ +....+..|+.+..++++. .|+... T Consensus 1 m~~~~~~~~~~~~~~~~~~~--------------~~~~p~-----~~-----~~~~~~~~~~~~~~~~~~~~~~pP~~~~ 56 (337) T protein:vir:78 1 MTKRQQQPAQAAASSPRPSV--------------VFSMPE-----AI-----DPTAWMTDYTGVFYNPYGEYYQPPIDRK 56 (337) T ss_pred CCCcccCcccccccCceeEE--------------EecCcc-----cc-----cCcchhHhhhhhhhccCcceecCCCCHH Confidence 344443211111 0111111 222221 11 1222355555555544442 233221 Q ss_pred EeccCcccccccchhhcccH-HHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCcee Q lcl|Aclame:pro 147 KHIEDKHVNYYLKRIRDARN-ILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTI 224 (945) Q Consensus 147 Rrtedg~ee~~~r~~a~dhp-L~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~V 224 (945) . ..+-...++ ....|. +||+.|+.+..-+.++++++.|++++||+|++++|+..|+|++|+|++|.+| T Consensus 57 ~----------La~l~~~~~~h~~~L~~k~N~~~~~f~~~~~~~~~~~~d~ll~GNay~~~~rn~~G~~~~L~pl~~~~v 126 (337) T protein:vir:78 57 G----------LAKVARANAHHGAILMARRNMVAGRFTNQRATITAFVHNYLQFGDGGLLKLRNSFGQVVGLHPLSSVYL 126 (337) T ss_pred H----------HHHHhhcchhhhhHHHhhhccccccCcCcHHHHHHHHHHHHhhCCeEEEEEECCCCcEEEEEEeCCcee Confidence 0 000001111 133454 9999888765444566778899999999999999999999999999999999 Q ss_pred EEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc Q lcl|Aclame:pro 225 KPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIP 304 (945) Q Consensus 225 tv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~P 304 (945) ++..+ |... | ...++....++++||+|++.. ++.. ..||+||+..+++++..+.+++++++++|. ||++| T Consensus 127 ~~~~d--~~~~--~--~~~~~~~~~~~~~eIiHik~~-~~~~--~~~Gls~~~~a~~si~l~~aa~~~~~~~f~-NGa~p 196 (337) T protein:vir:78 127 RRRED--GCFV--Y--LQQGKPNLIYRPDDVIWLAQY-DPEQ--QVYGMPDYLGGLQSALLNQDATLFRRRYFL-NGAHM 196 (337) T ss_pred EeeeC--CeEE--E--EEcCCceEEECCccEEEECCC-CCCC--CcccccHHHHHHHHHHHHHHHHHHHHHHHh-ccCCC Confidence 87654 3322 2 234556678999999998743 3222 347999999999999999999999999995 68899 Q ss_pred eEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc-----CCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 305 EGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS-----GGKFTWIDFKGKRRDMQFKELAEFVARK 379 (945) Q Consensus 305 sGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL-----~~G~k~~pLs~sp~D~QflE~rk~~~ee 379 (945) +|||.+++ +.+++++.++++++|++..+++|.++++++ ++|++++|+++++.|+||++++++++++ T Consensus 197 ~~il~~~~---------~~l~~e~~~~lk~~~~~~~G~~n~~~~~v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~e 267 (337) T protein:vir:78 197 GFIFYATD---------PNMDDDTEEEMKEMIANSKGVGNFRSMFVNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQD 267 (337) T ss_pred ceeEEcCC---------CCCCHHHHHHHHHHHHHhcCcccccceEEEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHH Confidence 99998752 468999999999999987666888988887 6789999999999999999999999999 Q ss_pred HHHHhcCChhhcccccC---CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhc Q lcl|Aclame:pro 380 ICAVYQVSPQDVGILEG---SNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLE 448 (945) Q Consensus 380 IA~aFGVPP~lLG~~e~---gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~ 448 (945) ||++|||||+++|+.++ ++++|+|++.+.|++++|.||+++||+++|+++.+... ..+|+++...+. T Consensus 268 Ia~a~~VPp~llGi~~~~~~~~~~n~e~~~~~f~~~~L~P~~~~ie~~~n~~ll~~~~--~~~f~~~~~~~~ 337 (337) T protein:vir:78 268 VLTAHRYPPALAGIIPTNGGGGLGDPEKYDATYARNEVLPLCELVQDAINSAGLPRAL--WVTFRETIGAAV 337 (337) T ss_pred HHHHhCCCHHHcccccCCCcCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhh--ceeccccccccC Confidence 99999999999997654 57889999999999999999999999999998876533 245666655555 No 96 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=100.00 E-value=2.1e-53 Score=309.43 Aligned_cols=330 Identities=12% Similarity=0.091 Sum_probs=224.5 Q ss_pred eecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhH-HhhhccHHHHHHHHHHHHhhc--cC Q lcl|Aclame:pro 65 FRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFR-KYRFNNDSKLIKVSEIPKKLT--SK 141 (945) Q Consensus 65 ~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~-~~Am~nsaV~aCV~iIA~~IA--sL 141 (945) -+|++=.++........ .+...|. .+.|++...-..+. ....... ..+...|.-+.++..+.++-+ +- T Consensus 1 m~~~~~~~~~~~~~~~~--~~~~~~~--~~~p~~~~~~~~~~-----~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~s 71 (340) T protein:vir:98 1 MSKRKPRKAVAMTASAP--QKMEAFT--FGEPVPVLDKRDIL-----DYVECISNGKWYEPPVSFSGLAKSLRSAVHHSS 71 (340) T ss_pred CCCCCCCccccccccCc--cceeEEE--cCCceeecCcchhh-----hhhhhhhcCceecCCCCHHHHHHHHHhccccch Confidence 22222111111111111 1111121 22333321111000 0011100 111222333333333322211 11 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) +++.++ +-+.. .-+|||+||+.+|++ ++.+++++||+|++++|+..|++++|+|++| T Consensus 72 ~i~~k~-----------------n~l~~-~~~Pn~~lt~~~f~~-----~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~ 128 (340) T protein:vir:98 72 PIYVKR-----------------NVLAS-TYIPHPLLSRQDFSR-----FALDYLVFGNAFLEQRHSVTGQLIKLLTSPA 128 (340) T ss_pred hhhhhh-----------------hHHhh-ccCCCCCCCHHHHHH-----HHHHHHhcCCeEEEEEECCCCcEEEEEEeCC Confidence 121110 01111 127999999998753 5678899999999999999999999999999 Q ss_pred ceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 222 TTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) Q Consensus 222 s~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnG 301 (945) .+|++..+. +.+ ++...++....++++||+|++.. .+. ...||+||+..+++++..+.++.++++++|. || T Consensus 129 ~~vr~~~~~--~~~---~~~~~~~~~~~~~~~eViHir~~-~~~--~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~-NG 199 (340) T protein:vir:98 129 KYTRRGVDD--SVF---WFVENFTQPHEFAPDTVFHLLEP-DIN--QEIYGLPEYLSALNSAWLNESATLFRRKYYQ-NG 199 (340) T ss_pred ceEEEcccC--cEE---EEEecCCeEEEEccccEEEEcCC-CCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHh-cc Confidence 999876543 332 22334556678999999999743 222 2348999999999999999999999999995 67 Q ss_pred CCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc-----CCCceeeeccCChhhHHHHHHHHHH Q lcl|Aclame:pro 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS-----GGKFTWIDFKGKRRDMQFKELAEFV 376 (945) Q Consensus 302 a~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL-----~~G~k~~pLs~sp~D~QflE~rk~~ 376 (945) ++|+|||.+++ +.+++++.++++++|++..+.+|+++++|+ ++|++++|++.+++|+||+++++++ T Consensus 200 a~pg~il~~~~---------~~ls~e~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~ 270 (340) T protein:vir:98 200 AHAGYIMYVTD---------PAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKAS 270 (340) T ss_pred CCCceEEEecC---------CCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHhh Confidence 89999998753 468999999999999986555899999888 6799999999999999999999999 Q ss_pred HHHHHHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHH Q lcl|Aclame:pro 377 ARKICAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKER 451 (945) Q Consensus 377 ~eeIA~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~k 451 (945) +++||++|||||.++|+.++ ++++|+|++.+.|++++|.|+++.||+ +|.+|... .++|+...+.+.+ T Consensus 271 ~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~iee-~n~~L~~e------~~rF~~~~l~~~d 340 (340) T protein:vir:98 271 AADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) T ss_pred HHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhccccc------ccccCccccccCC Confidence 99999999999999999765 458999999999999999999999995 77777442 1456666665444 No 97 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=100.00 E-value=1.3e-52 Score=305.07 Aligned_cols=322 Identities=15% Similarity=0.148 Sum_probs=222.9 Q ss_pred eeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHH-------------- Q lcl|Aclame:pro 71 LKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPK-------------- 136 (945) Q Consensus 71 ~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~-------------- 136 (945) .+|.|......+...|..-.-.. ++... ..-++.+|-. + +....+..|+.+..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~p~~-----v-----~~~~~~~~~~~~~~~~~~~~pp~~~~~la 68 (351) T protein:vir:79 1 MSKRRSRAPRTFAAAPNPSAGSA-APARA-EVFTFDDPTP-----V-----MNRAEILDYVECWSNGEWFEPPVSFAGLA 68 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhc-cccee-EEEEcCCcee-----e-----cCcchhhhhhhhhhcCceecCCCCHHHHH Confidence 23222211110000000000000 00000 0001111100 0 000111112221111 Q ss_pred -hhc-----cCceEEEEeccCcccccccchhhcccHHHHHHh--ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec Q lcl|Aclame:pro 137 -KLT-----SKELEIYKHIEDKHVNYYLKRIRDARNILEFLE--RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD 208 (945) Q Consensus 137 -~IA-----sLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~--rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird 208 (945) ..- +-+++.+ + ..|.. +|||+||+++|++ ++.+++++||+|++++|+ T Consensus 69 ~~~~~~~~h~~~l~~k------------------~--n~l~~~~~Pnp~~t~~~f~~-----~v~d~ll~Gnay~~~~r~ 123 (351) T protein:vir:79 69 KSFRASTHHSSALFFK------------------A--NVLASTFRPHRWLSRHAFER-----WALDFLTFGNGYLERRRN 123 (351) T ss_pred HHHhhhHhhhhhhhhh------------------h--hHHhhcccCCCCCCHHHHHH-----HHHHHHhcCCeEEEEEEC Confidence 100 0011110 0 01222 7999999999854 456889999999999999 Q ss_pred CCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 209 EQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIF 288 (945) Q Consensus 209 ~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~a 288 (945) ..|++++|+|++|.+|++..+.++ |++...++....++++||||++.. .+. ...||+||+..+++++..+.+ T Consensus 124 ~~G~~~~L~~l~~~~v~~~~~~~~-----~~~~~~~g~~~~~~~~eIihir~~-~~~--~~~yGl~~~~~a~~si~l~~~ 195 (351) T protein:vir:79 124 MVGGTLRLEPALAKYVRRKADFSG-----FVYVNGWQERHEFEPDSVFQLVRP-DIN--QEVYGLPEYLSSLHSAWLNES 195 (351) T ss_pred CCCCEEEEEEeCCcceeeeecCCe-----EEEEecCceEEEEcCccEEEeCCC-CCC--CCcccccHHHHHHHHHHHHHH Confidence 999999999999999998877664 344455667788999999999743 332 234899999999999999999 Q ss_pred HHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc-----CCCceeeeccCC Q lcl|Aclame:pro 289 IDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS-----GGKFTWIDFKGK 363 (945) Q Consensus 289 aee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL-----~~G~k~~pLs~s 363 (945) +..+++++|. ||++|+|||.+++ +.+++++.++++++|++..+.+|+++++++ ++|++++|++++ T Consensus 196 a~~~~~~~f~-NGa~pg~il~~~~---------~~ls~e~~~~lk~~~~~~~G~~N~~~~~v~~~~g~~~gi~~~pl~~~ 265 (351) T protein:vir:79 196 STLFRRKYYE-NGSHAGFILYMTD---------AAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEV 265 (351) T ss_pred HHHHHHHHHh-ccCCCceEEEecC---------CCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEcCCC Confidence 9999999995 6889999998753 468999999999999987655899999887 589999999999 Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEE Q lcl|Aclame:pro 364 RRDMQFKELAEFVARKICAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLW 441 (945) Q Consensus 364 p~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~ 441 (945) ++|+||++++++++++||++|||||.++|+.+. ++++|+|++.+.|++++|.|++++||+ +|.+|... .++ T Consensus 266 ~~d~ef~e~k~~s~~eI~~a~~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~Pl~~~ie~-ln~~lg~~------~~~ 338 (351) T protein:vir:79 266 AAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGDE------VVT 338 (351) T ss_pred hhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCcc------eee Confidence 999999999999999999999999999999766 458999999999999999999999985 77766321 356 Q ss_pred eechhhcCHHHHH Q lcl|Aclame:pro 442 FKEDDLEKERDWW 454 (945) Q Consensus 442 fd~~~l~D~kera 454 (945) |+...+.+...++ T Consensus 339 F~~~~llr~d~~a 351 (351) T protein:vir:79 339 FDDYEIPPAPVAA 351 (351) T ss_pred eChhhhccccccC Confidence 7766665544444 No 98 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=100.00 E-value=1.8e-52 Score=304.21 Aligned_cols=322 Identities=15% Similarity=0.143 Sum_probs=222.5 Q ss_pred eeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHH-------------- Q lcl|Aclame:pro 71 LKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPK-------------- 136 (945) Q Consensus 71 ~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~-------------- 136 (945) .+|.|......+...|..-.-.. ++... ..-++.+|-. + +....+..|+.+..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~p~~-----v-----~~~~~~~~~~~~~~~~~~~~pp~~~~~la 68 (351) T protein:vir:78 1 MSKRRSRAPRTFAAAPNPSAGSA-APARA-EVFTFDDPTP-----V-----MNRAEILDYVECWSNGEWFEPPVSFAGLA 68 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhc-cccee-EEEEcCCcee-----e-----cCcchhhhhhhhhccCceecCCCCHHHHH Confidence 23222211100000000000000 00000 0001111100 0 000111111111111 Q ss_pred -h-----hccCceEEEEeccCcccccccchhhcccHHHHHHh--ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec Q lcl|Aclame:pro 137 -K-----LTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE--RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD 208 (945) Q Consensus 137 -~-----IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~--rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird 208 (945) . -.+-+++.+ . ..|.. +|||+||+++|++ ++.+++++||+|++++|+ T Consensus 69 ~~~~~~~~h~~~l~~k------------------~--n~l~~~~~Pn~~~t~~~f~~-----~~~d~ll~Gnay~~~~rn 123 (351) T protein:vir:78 69 KSFRASTHHSSALFFK------------------A--NVLASTFRPHRWLSRHAFER-----WALDFLTFGNGYLERRRN 123 (351) T ss_pred HHHhhhHhhhhhhhhh------------------h--hHHhhcccCCCCCCHHHHHH-----HHHHHHhcCCeEEEEEEC Confidence 0 001111110 0 01222 6999999999864 456888999999999999 Q ss_pred CCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 209 EQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIF 288 (945) Q Consensus 209 ~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~a 288 (945) ..|++++|+|++|.+|++..+.++ |.+...++....|+++||||++.. .+. ...||+||+..+++++..+.+ T Consensus 124 ~~G~~~~L~pl~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~eVihir~~-~~~--~~~yGl~~~~~a~~si~l~~~ 195 (351) T protein:vir:78 124 MVGGTLRLEPALAKYVRRKADFSG-----FVYVNGWQERHEFAPDSVFQLVRP-DIN--QEVYGLPEYLSSLHSAWLNES 195 (351) T ss_pred CCCCEEEEEEecCcceEEeeeCCe-----EEEEecCCeEEEEccccEEEEcCC-CCC--CCcccccHHHHHHHHHHHHHH Confidence 999999999999999999887664 333445666788999999999743 332 234899999999999999999 Q ss_pred HHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc-----CCCceeeeccCC Q lcl|Aclame:pro 289 IDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS-----GGKFTWIDFKGK 363 (945) Q Consensus 289 aee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL-----~~G~k~~pLs~s 363 (945) +..+++++|. ||++|+|||.+++ +.+++++.++++++|++..+++|+++++|+ ++|++++|++++ T Consensus 196 a~~~~~~~f~-NGa~pggIl~~~~---------~~ls~e~~~~lr~~~~~~~G~~N~~~~~v~~~~g~~~g~k~~pls~~ 265 (351) T protein:vir:78 196 STLFRRKYYE-NGSHAGFILYMTD---------AAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEV 265 (351) T ss_pred HHHHHHHHHh-ccCCCceEEEecC---------CCCCHHHHHHHHHHHHHhcCcccccceeeecCCCCccceeEEEcCCC Confidence 9999999995 6789999998753 468999999999999987656899999887 579999999999 Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEE Q lcl|Aclame:pro 364 RRDMQFKELAEFVARKICAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLW 441 (945) Q Consensus 364 p~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~ 441 (945) ++|+||++++++++++||++|||||.++|+.++ ++++|+|++.+.|++++|.|+++.||+ ++.+|... .|+ T Consensus 266 ~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~P~~~~iee-~n~~l~~~------~~~ 338 (351) T protein:vir:78 266 AAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGDE------VVR 338 (351) T ss_pred hhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCcc------cee Confidence 999999999999999999999999999999776 458999999999999999999999996 66555322 367 Q ss_pred eechhhcCHHHHH Q lcl|Aclame:pro 442 FKEDDLEKERDWW 454 (945) Q Consensus 442 fd~~~l~D~kera 454 (945) |+...+.+..+++ T Consensus 339 F~~~~Llr~d~ka 351 (351) T protein:vir:78 339 FDDYEIPPAPVAA 351 (351) T ss_pred cChhhhccccccC Confidence 7777666544444 No 99 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=100.00 E-value=1.6e-52 Score=304.53 Aligned_cols=330 Identities=12% Similarity=0.100 Sum_probs=221.8 Q ss_pred eeecceeeeccccccccccccCCCC---CcccccCcccceeccccCCcccchhhhhhHHh-hhccHHHHHHHHHH--HHh Q lcl|Aclame:pro 64 IFRKNQVLKKEKIIVPYNHQEPPFK---FNLFEYSPESLMYLPSISDPDAFFLINLFRKY-RFNNDSKLIKVSEI--PKK 137 (945) Q Consensus 64 ~~k~n~l~kK~K~i~p~~~r~pp~~---f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~-Am~nsaV~aCV~iI--A~~ 137 (945) ..||.+ +...|.++...... -....+.|+++. ...+-.....+.... +..-|.-+.++-.+ |+. T Consensus 1 m~~~~~-----~~~~~~~~~~~~~~~~~~~~~f~~p~~v~-----~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~ 70 (344) T protein:vir:60 1 MSKKKG-----KTLQPAAKKMTASAPKMEAFTFGEPVPVL-----DRRDILDYVECISNGRWYEPPISFTGLAKSLRAAV 70 (344) T ss_pred CCcccC-----CCCCchHHhhcCCcCcEEEEEcCCceeec-----CCcchhHHHHhhhcCccccCCCCHHHHHHHHHhhh Confidence 333322 11122222111100 000111222111 000000111111100 11111111111111 111 Q ss_pred hccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEE Q lcl|Aclame:pro 138 LTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAIT 217 (945) Q Consensus 138 IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~ 217 (945) ..+-+++.++ +-+.. +-+|||+||+.+| + .++.|++++||+|++++|+..|+|++|+ T Consensus 71 ~h~~~i~~k~-----------------n~l~~-~~~Pn~~~t~~~f-~----~~~~d~ll~Gnay~~i~rn~~G~~~~L~ 127 (344) T protein:vir:60 71 HHSSPIYVKR-----------------NILAS-TFIPHPWLSQQDF-S----RFVLDFLVFGNAFLEKRYSTTGKVIRLE 127 (344) T ss_pred hhccchhhhh-----------------hHHHh-hccCCCCCCHHHH-H----HHHHHHHhcCCeEEEEEECCCCcEEEEE Confidence 1222333211 11111 2279999999886 3 3567889999999999999999999999 Q ss_pred EcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 218 PVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYY 297 (945) Q Consensus 218 pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F 297 (945) |++|.+|++..+.+. |++...++....++++||||++.. .+. ...||+||+..+++++..+.+++++++++| T Consensus 128 ~l~~~~vr~~~~~~~-----~~~v~~~~~~~~~~~~eIiHir~~-~~~--~~~yGlsp~~~a~~si~l~~~a~~~~~~~f 199 (344) T protein:vir:60 128 TSPAKYTRRGVEEDV-----YWWVPSFNEPTAFAPGSVFHLLEP-DIN--QELYGLPEYLSALNSAWLNESATLFRRKYY 199 (344) T ss_pred EcCcceEEEeecCCe-----EEEEccCCeEEEEcCccEEEEcCC-CCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 999999998776552 334556667788999999998743 222 234899999999999999999999999999 Q ss_pred HhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc------CCCceeeeccCChhhHHHHH Q lcl|Aclame:pro 298 RKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS------GGKFTWIDFKGKRRDMQFKE 371 (945) Q Consensus 298 ~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL------~~G~k~~pLs~sp~D~QflE 371 (945) . ||++|++||.+++ +.+++++.++++++|++.+++ ++++++++ ++|++|+|+++++.|+||+| T Consensus 200 ~-NG~~pg~il~~~~---------~~ls~e~~~~ik~~~~~~~g~-~~~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e 268 (344) T protein:vir:60 200 E-NGAHAGYIMYVTD---------AVQDRNDIEMLRENMVKSKGR-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFN 268 (344) T ss_pred h-ccCCCceEEEecC---------cCCCHHHHHHHHHHHHHhcCC-CCCcceEEecCCCCccceeEEEcCCChhHHHHHH Confidence 5 6889999998752 468999999999999998754 55666666 57999999999999999999 Q ss_pred HHHHHHHHHHHHhcCChhhcccccCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcC Q lcl|Aclame:pro 372 LAEFVARKICAVYQVSPQDVGILEGS--NKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEK 449 (945) Q Consensus 372 ~rk~~~eeIA~aFGVPP~lLG~~e~g--T~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D 449 (945) ++++++++||++|||||.++|+.+++ +++|+|++.+.|++++|.||+++|| ++|.+|-. ..++|+....+..| T Consensus 269 ~k~~~~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~L~Pl~~~~e-~ln~~lg~----~~i~F~~~~l~~~d 343 (344) T protein:vir:60 269 IKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQ----EVIRFKNYSLDTDN 343 (344) T ss_pred HHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHHH-HHHHhcCC----cccccCccccCCCC Confidence 99999999999999999999987654 5899999999999999999999998 48877632 23445444444445 Q ss_pred H Q lcl|Aclame:pro 450 E 450 (945) Q Consensus 450 ~ 450 (945) . T Consensus 344 ~ 344 (344) T protein:vir:60 344 G 344 (344) T ss_pred C Confidence 4 No 100 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=100.00 E-value=3.3e-52 Score=302.85 Aligned_cols=358 Identities=15% Similarity=0.146 Sum_probs=228.1 Q ss_pred CCCc-chhhhhhhhhccceeeeeeeeeecceee-eccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhh Q lcl|Aclame:pro 40 YPGF-KPLLTYRALAWNSTVVYSIIIFRKNQVL-KKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLF 117 (945) Q Consensus 40 ~~~~-~~~~~~~~~~~~~~~~~~~~~~k~n~l~-kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~ 117 (945) .|.- .|--..|- .-| +||-...+- +|.|.-.+...-..|..-.... ++... ..-++.+|. ++ T Consensus 1 ~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~f~fg~p~-----~v- 64 (376) T protein:vir:10 1 MPARDRPRAARRR-------RHS-FIFIHGVLRMSKRRSRAPRTFAAAPNPSAGSA-APARA-EVFTFDDPT-----PV- 64 (376) T ss_pred CCCCccchhhhhh-------ccc-chhhcccccchhccCCCcccchhhhhHhhhcc-Cccee-EEEEcCCce-----ec- Confidence 2211 01111111 112 122222221 1222111110000000000000 00000 000111110 00 Q ss_pred HHhhhccHHHHHHHHHHHHh-hccCceEEEEeccCcccccccchhhccc--HHH----HHHh--ccCccCChHHHHHHHH Q lcl|Aclame:pro 118 RKYRFNNDSKLIKVSEIPKK-LTSKELEIYKHIEDKHVNYYLKRIRDAR--NIL----EFLE--RPDPYFSEVNSWEYLL 188 (945) Q Consensus 118 ~~~Am~nsaV~aCV~iIA~~-IAsLP~~VyRrtedg~ee~~~r~~a~dh--pL~----~LL~--rPNp~mT~~eFwetli 188 (945) +....+..|+.+..+. .-.-|+....-. + . -+....| +++ .|.. +|||+||+.+|++ T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~pp~~~~~La-~-----~-~~~~~~h~s~l~~k~n~l~~~~~Pnp~lT~~~f~~--- 130 (376) T protein:vir:10 65 ----MNRAEILDYVECWSNGEWFEPPVSFAGLA-K-----S-FRASTHHSSALFFKANVLASTFRPHRWLSRHAFER--- 130 (376) T ss_pred ----cCcchhhhhhhhhhcCceecCCCCHHHHH-H-----H-HhhhHHhhhhHHHHhHHHHhccCCCCCCCHHHHHH--- Confidence 1111122222222111 111121100000 0 0 0000001 111 1222 6999999999864 Q ss_pred HHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCcc Q lcl|Aclame:pro 189 GMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYM 268 (945) Q Consensus 189 ~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~ 268 (945) ++.+++++||+|++++|+..|+|++|+|++|.+|++..+.++ |.+...++....|+++||||++... +. . T Consensus 131 --~v~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~-----~~~~~~~~~~~~~~~~eViHir~~~-~~--~ 200 (376) T protein:vir:10 131 --WALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFNG-----FVYVNGWQERHEFEPDSVFQLVRPD-IN--Q 200 (376) T ss_pred --HHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceEEEeeCCe-----EEEEEcCCeEEEEccccEEEecCCC-CC--C Confidence 456888999999999999999999999999999999887653 3344566777889999999997532 22 2 Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcc Q lcl|Aclame:pro 269 YGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVP 348 (945) Q Consensus 269 ~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp 348 (945) ..||+||+.++++++..+.++.+|+.++|. ||++|+|||.+++ +.+++++.++++++|++..+.+|++++ T Consensus 201 ~~yGls~~~~a~~si~l~~aa~~f~~~~f~-NGa~pggIl~~~d---------~~l~~e~~~~lr~~~~~~~G~~N~~~~ 270 (376) T protein:vir:10 201 EVYGLPEYLSSLHSAWLNESSTLFRRKYYE-NGSHAGFILYMTD---------AAQKQDDVDNMRDALKNAKGPGNFRNV 270 (376) T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCceEEEecC---------CCCCHHHHHHHHHHHHHhcCccccCce Confidence 358999999999999999999999999995 6789999998753 468999999999999986555899999 Q ss_pred ccc-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 349 ILS-----GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATI 421 (945) Q Consensus 349 ~VL-----~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~I 421 (945) +++ ++|++|+|++++++|+||++++++++++||++|||||.++|+.++ ++++|+|++.+.|++++|.|+++.| T Consensus 271 ~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~eq~~~~f~~~~L~Pl~~~i 350 (376) T protein:vir:10 271 FMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARF 350 (376) T ss_pred eEecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHH Confidence 888 579999999999999999999999999999999999999999775 4689999999999999999999999 Q ss_pred HHHHHHhhccccccceeEEEeechhhcCHHHHH Q lcl|Aclame:pro 422 SKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWW 454 (945) Q Consensus 422 EqeLn~kL~~~~~~~g~~f~fd~~~l~D~kera 454 (945) |+ +|.+|... .++|+...+.+..+++ T Consensus 351 ee-ln~~L~~~------~~~F~~~~Llr~d~ka 376 (376) T protein:vir:10 351 AE-LNDWLGEE------VVRFDDYEIPPAPVAA 376 (376) T ss_pred HH-HHhhcccc------ccccChhHhhcccccC Confidence 85 77766322 3667766665544444 No 101 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=100.00 E-value=5.7e-52 Score=301.53 Aligned_cols=333 Identities=14% Similarity=0.109 Sum_probs=218.7 Q ss_pred eecceeeeccccccccccccCCCCCcccccCcccceeccccCCcc-------cchhhhhhHHhhhcc-HHHHHHHHHH-- Q lcl|Aclame:pro 65 FRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPD-------AFFLINLFRKYRFNN-DSKLIKVSEI-- 134 (945) Q Consensus 65 ~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~-------~~~~~~v~~~~Am~n-saV~aCV~iI-- 134 (945) -+|-| |.....+...+..+..-..... .+....-++.+|. -..+..+....-... |.-+..+-.+ T Consensus 1 m~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~v~~~~~~~~y~~~~~~~~~~~pp~~~~~la~~~~ 75 (350) T protein:vir:11 1 MSKRR---SHRRQQPVTVQSAQEGEFIPRQ--GGRAEAFTFGDPMPVLDGRGILDYLECWPNGRWYEPPLSMEGLAKSVG 75 (350) T ss_pred CCccc---cCCCcCccccCCcchhhhcccc--ccceEEEEeCCceeecCcchhhHHHHHhhcCccccCCCCHHHHHHHHh Confidence 11111 1111111111100000000000 0000011111111 000111110000000 1111111010 Q ss_pred HHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEE Q lcl|Aclame:pro 135 PKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLV 214 (945) Q Consensus 135 A~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pv 214 (945) ++...+-++..+ +.+....-+|||+||+++|++ ++.|++++||+|++++|+..|+++ T Consensus 76 ~~~~h~~~l~~k------------------~n~l~~~~~Pn~~~t~~~f~~-----~v~d~ll~Gnay~~~~rn~~G~~~ 132 (350) T protein:vir:11 76 SSVYLQSGLKFK------------------RNMLAKTFIPHRLLSRATFEQ-----FSLDWLTFGSAYLEQPRSRLGTRM 132 (350) T ss_pred hhhhhccchhhh------------------hhhhhhcccCCCCCCHHHHHH-----HHHHHHhcCCeEEEEEEcCCCCEE Confidence 011111111111 111111127999999999854 456889999999999999999999 Q ss_pred EEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 215 AITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNL 294 (945) Q Consensus 215 eL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a 294 (945) +|+|++|.+|++..+.++ + ++...++....++++||||++.. ++.. ..||+||+.++++++..+.++..+++ T Consensus 133 ~L~~l~~~~vr~~~~~~~--~---~~~~~~~~~~~~~~~eVihir~~-~~~~--~~yGls~~~~a~~si~l~~~a~~~~~ 204 (350) T protein:vir:11 133 PLQAPLAKYMRRGTDLET--F---YQVRSWKDEHEFEKGSVIQLREA-DINQ--EIYGVPEWFCALQSALLNESATLFRR 204 (350) T ss_pred EEEEeCCceeEeeecCCe--E---EEEeeCCeEEEECcccEEEeCCC-CCCC--CcccccHHHHHHHHHHHHHHHHHHHH Confidence 999999999998775542 2 23344666778999999999754 3332 34899999999999999999999999 Q ss_pred HHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc-----CCCceeeeccCChhhHHH Q lcl|Aclame:pro 295 DYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS-----GGKFTWIDFKGKRRDMQF 369 (945) Q Consensus 295 ~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL-----~~G~k~~pLs~sp~D~Qf 369 (945) ++|. ||++|+|||.+++ +.+++++.++++++|++..+++|+|+++|+ ++|++++|++++++|+|| T Consensus 205 ~~f~-NGa~~~gil~~~~---------~~ls~e~~~~l~~~~~~~~G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf 274 (350) T protein:vir:11 205 KYYN-NGSHAGFILYMTD---------AAQNEEDIDALRTALKTAKGPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEF 274 (350) T ss_pred HHHh-ccCCCceEEEecC---------CCCCHHHHHHHHHHHHHhcCccccCceeeecCCCCccceEEEEcCCChhHHHH Confidence 9995 6889999998753 468999999999999998767899999888 468999999999999999 Q ss_pred HHHHHHHHHHHHHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhh Q lcl|Aclame:pro 370 KELAEFVARKICAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDL 447 (945) Q Consensus 370 lE~rk~~~eeIA~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l 447 (945) ++++++++++||++|||||.++|+.++ ++++|+|++.+.|++++|.|++++||+ +|.+|.++... ..+|+...+ T Consensus 275 ~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~L~P~~~~ie~-ln~~l~~~~~~---F~~~~~~~l 350 (350) T protein:vir:11 275 GSIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGSISDAAAVWASLELAPMQTRLQQ-VNEMIGEEVVR---FAQFDAPGL 350 (350) T ss_pred HHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH-HHhhcCccccc---cCcccccCC Confidence 999999999999999999999999766 568999999999999999999999995 77777553221 112333333 No 102 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=100.00 E-value=7.1e-52 Score=301.00 Aligned_cols=326 Identities=14% Similarity=0.149 Sum_probs=220.4 Q ss_pred eeccccccccccc-c----CC--CCCcccccCcccceeccccCCcccchhhhhhHH-hhhccHHHHHHHHHH--HHhhcc Q lcl|Aclame:pro 71 LKKEKIIVPYNHQ-E----PP--FKFNLFEYSPESLMYLPSISDPDAFFLINLFRK-YRFNNDSKLIKVSEI--PKKLTS 140 (945) Q Consensus 71 ~kK~K~i~p~~~r-~----pp--~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~-~Am~nsaV~aCV~iI--A~~IAs 140 (945) .+|.|+..+.+.. . ++ ..|. .+.|++. ++..+-..+..+... .+..-|.=+.++..+ |+..-+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~v-----~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~ 73 (344) T protein:vir:56 1 MSKKKGKTPQPAAKTMTASAPKMEAFT--FGEPVPV-----LDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHS 73 (344) T ss_pred CCCCCCCCCchhhHHhhcCCCceEEEE--cCCceee-----cCcchhhhHHHhhhcCccccCCCCHHHHHHHHhhhhhhC Confidence 3333332221110 0 01 0111 1122211 111110011111000 000111112222222 111122 Q ss_pred CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 141 KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 141 LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) -+++.++ .+....-+|||+||+.+| + +++.|++++||+|++++|+..|++++|+|++ T Consensus 74 s~i~~k~------------------n~l~~~~~Pnp~~t~~~f-~----~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~ 130 (344) T protein:vir:56 74 SPIYVKR------------------NILASTFIPHPWLSQQDF-S----RFVLDFLVFGNAFLEKRYSTTGKVIRLETSP 130 (344) T ss_pred ccceehh------------------hhHHhhcCCCCCCCHHHH-H----HHHHHHHhcCCeEEEEEECCCCcEEEEEEeC Confidence 2333321 111112289999999987 3 3567899999999999999999999999999 Q ss_pred CceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) |.+|++..+.+. |++...++....++++||||++... +. ...||+||+..+++++..+.+++++++++|. | T Consensus 131 ~~~v~~~~~~~~-----~~~~~~~g~~~~~~~~dIiHir~~~-~~--~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~-N 201 (344) T protein:vir:56 131 AKYTRRGVEEDV-----YWWVPSFNEPTAFAPGSVFHLLEPD-IN--QELYGLPEYLSALNSAWLNESATLFRRKYYE-N 201 (344) T ss_pred CceeEEeecCCE-----EEEEecCCeEEEEcCccEEEECCCC-CC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHh-c Confidence 999998766542 3334556677789999999997432 22 2347999999999999999999999999995 6 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc------CCCceeeeccCChhhHHHHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS------GGKFTWIDFKGKRRDMQFKELAE 374 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL------~~G~k~~pLs~sp~D~QflE~rk 374 (945) |++|++||.+++ +.+++++.++++++|++.. |.++++++++ ++|++++|+++++.|+||+|+++ T Consensus 202 Ga~pg~Il~~~d---------~~ls~e~~~~lk~~~~~~~-g~~~~r~l~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~ 271 (344) T protein:vir:56 202 GAHAGYIMYVTD---------AVQDRNDIEMLRENMVKSK-GRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKK 271 (344) T ss_pred cCCCceEEEecC---------CCCCHHHHHHHHHHHHHhc-CCCCccceEEecCCCCccceeEEEcCCChHHHHHHHHHH Confidence 889999998753 3689999999999999876 4567888777 57999999999999999999999 Q ss_pred HHHHHHHHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHH Q lcl|Aclame:pro 375 FVARKICAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERD 452 (945) Q Consensus 375 ~~~eeIA~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~ke 452 (945) +++++||++|||||.++|+.++ ++++|+|++.+.|+++||.||++.||+ +|.+|... .+.|+...+.+... T Consensus 272 ~s~~eIa~afrVPp~llGi~~~~t~~~~n~eq~~~~f~~~tL~Pl~~~ie~-~n~~l~~~------~~~F~~y~l~~~~~ 344 (344) T protein:vir:56 272 ASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQE------VIRFKNYSLDTDNG 344 (344) T ss_pred hhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhhhccc------cccCCCccccccCC Confidence 9999999999999999998766 458999999999999999999999995 66666432 13344443332222 No 103 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=100.00 E-value=1.9e-51 Score=298.60 Aligned_cols=328 Identities=13% Similarity=0.114 Sum_probs=221.5 Q ss_pred eecccccccccc-cc----CCCCCcccccCcccceeccccCCcccchhhhhhHH-hhhccHHHHHHHHHH--HHhhccCc Q lcl|Aclame:pro 71 LKKEKIIVPYNH-QE----PPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRK-YRFNNDSKLIKVSEI--PKKLTSKE 142 (945) Q Consensus 71 ~kK~K~i~p~~~-r~----pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~-~Am~nsaV~aCV~iI--A~~IAsLP 142 (945) .+|.|...+.+. +. .+.--....+.|+++ ++..+-..+...... .+..-|.=+.++..+ |+...+-+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v-----~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~ 75 (344) T protein:vir:20 1 MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVPV-----LDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSP 75 (344) T ss_pred CCcccCCCCcchhhhhhccCCceEEEEcCCceEe-----cCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhhhhCcc Confidence 333332222111 00 000000011122211 111100000110000 000001111111111 22222333 Q ss_pred eEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCc Q lcl|Aclame:pro 143 LEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGT 222 (945) Q Consensus 143 ~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs 222 (945) ++.++ .+....-+|||+||+.+|. .++.|++++||+|++++|+..|+|++|+|++|. T Consensus 76 i~~k~------------------n~l~~~~~Pn~~lt~~~f~-----~~~~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~ 132 (344) T protein:vir:20 76 IYVKR------------------NILASTFIPHPWLSQQDFS-----RFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAK 132 (344) T ss_pred ceehh------------------hhHHHhccCCCCCCHHHHH-----HHHHHHHhcCCeEEEEEECCCCcEEEEEEcCCc Confidence 43321 1111122799999998863 356788999999999999999999999999999 Q ss_pred eeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 223 TIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGS 302 (945) Q Consensus 223 ~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa 302 (945) +|++..+.++ |++...++....++++||||++.. .+. ...||+||+..+++++..+.+++++++++|. ||+ T Consensus 133 ~vr~~~~~~~-----~~~~~~~~~~~~~~~~eIiHir~~-~~~--~~~yGls~~~~a~~si~l~~~a~~~~~~~f~-NGa 203 (344) T protein:vir:20 133 YTRRGVEEDV-----YWWVPSFNEPTAFAPGSVFHLLEP-DIN--QELYGLPEYLSALNSAWLNESATLFRRKYYE-NGA 203 (344) T ss_pred eeEeeecCCE-----EEEEccCCeEEEEcCccEEEeCCC-CCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHh-ccC Confidence 9998766542 334456677788999999999743 322 2348999999999999999999999999996 688 Q ss_pred CceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc------CCCceeeeccCChhhHHHHHHHHHH Q lcl|Aclame:pro 303 IPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS------GGKFTWIDFKGKRRDMQFKELAEFV 376 (945) Q Consensus 303 ~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL------~~G~k~~pLs~sp~D~QflE~rk~~ 376 (945) +|++||.+++ +.+++++.++++++|++..++ ++++++++ ++|++++|++.++.|+||+|+++++ T Consensus 204 ~p~~Il~~~d---------~~l~~e~~~~ik~~~~~~~g~-~n~r~l~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s 273 (344) T protein:vir:20 204 HAGYIMYVTD---------AVQDRNDIEMLRENMVKSKGR-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKAS 273 (344) T ss_pred CCceEEEecC---------cCCCHHHHHHHHHHHHHhcCC-CCccceEEecCCCCccceeEEEcCCChhHHHHHHHHHhh Confidence 9999998753 468999999999999997654 55666666 5799999999999999999999999 Q ss_pred HHHHHHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCH Q lcl|Aclame:pro 377 ARKICAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKE 450 (945) Q Consensus 377 ~eeIA~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~ 450 (945) +++||++|||||.++|+.++ ++++|+|++.+.|++++|.||+++||+ +|.+|-. ..++|++...+..|. T Consensus 274 ~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~P~~~~~e~-in~~lg~----~~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 274 AADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWLGQ----EVIRFKNYSLDTDND 344 (344) T ss_pred HHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HHHhcCC----cccccCccccccCCC Confidence 99999999999999998765 458999999999999999999999984 7766632 334555555555555 No 104 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=100.00 E-value=3.7e-46 Score=269.65 Aligned_cols=247 Identities=17% Similarity=0.145 Sum_probs=185.7 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-||++. +|+.+.. ++.... ......+++++.. ...++...|+++++||+||++||++||++ T Consensus 1 MglF~~~-----~~r~~~~----~~~~~~------~~~~~~~~~~~~~---~~~v~~~~al~~~~v~~~i~~ia~~iA~l 62 (251) T protein:vir:46 1 MGIFYKN-----EKRDLQY----NEDDLQ------MMVQTLPSFQGTK---LRQYKDIEAIRHSDIFTAVMMIASDLARM 62 (251) T ss_pred CCccccc-----cccccCC----Cccchh------hhhhhhccccCcC---cceechhhhhccHHHHHHHHHHHHhHhhC Confidence 4445432 1211111 111100 0011123333221 23567788999999999999999999999 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVD 220 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLd 220 (945) ||++|+..+ ....||+++||+ +||++||+++||+. ++.+++++||+|+++.|+..|+|++|+||+ T Consensus 63 p~~~~~~~~----------~~~~~~~~~ll~~~Pn~~~t~~~f~~~----l~~~lll~Gnay~~i~r~~~G~~~~L~~i~ 128 (251) T protein:vir:46 63 PIRVTVNGQ----------INYSDRIVNLLNTRPNPMYNGYIFKLV----VFVSALLTSHGYIEITRDKTGEPMNLTFRK 128 (251) T ss_pred ceEEeeCcc----------ccccchHHHHHhccCCCCCCHHHHHHH----HHHHHhhcCCeEEEEEECCCCcEEEEEEEC Confidence 999997432 235699999996 99999999998765 678889999999999999999999999999 Q ss_pred CceeEEEEcCCCceEEEEEEee--CCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 221 GTTIKPILSEDTGIVVGYVQEV--DGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYR 298 (945) Q Consensus 221 Ps~Vtv~~d~dG~~~~~Yv~~~--dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~ 298 (945) |++|++..+++|...+.|.... .++....++++||||++... .++ .+|+||+..+++++..+.++++++.++|. T Consensus 129 ~~~v~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~diiH~r~~~-~dg---~~G~spi~~~~~~i~~~~~~~~~~~~~f~ 204 (251) T protein:vir:46 129 TSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDG---INGLSLLDTLSRTIESDNNGKDFLNNFLR 204 (251) T ss_pred CceEEEEECCCCcEEEEEEEeccCCcceeEEECCccEEEecCcC-CCC---eeecCHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999999998887766554332 33556789999999998653 332 37999999999999999999999999996 Q ss_pred hCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCcee Q lcl|Aclame:pro 299 KGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTW 357 (945) Q Consensus 299 nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~ 357 (945) ||++|+|||+++.. ..++++++++++.|++.++| +|+|++++ ||+- T Consensus 205 -ng~~p~gil~~~~~---------l~~~e~~~~~~~~~~~~~~g~~n~g~~~~---gm~~ 251 (251) T protein:vir:46 205 -NGTHAGGILKMKGV---------LDNKKARDRAREEFPKVLVELNKLGKLSY---SMNQ 251 (251) T ss_pred -ccCCCcEEEEeCCC---------CCCHHHHHHHHHHHHHHhcCccccccccc---ccCC Confidence 57789999998531 23567889999999999999 68888654 4443 No 105 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=100.00 E-value=4.4e-45 Score=263.76 Aligned_cols=210 Identities=13% Similarity=0.118 Sum_probs=169.3 Q ss_pred EEEcCCCceEEEEEE--eeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 226 PILSEDTGIVVGYVQ--EVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSI 303 (945) Q Consensus 226 v~~d~dG~~~~~Yv~--~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~ 303 (945) +.+..+|...|.+.. ...++....++++||+|++...+.+ +.+|+|||.+++.++..+.++++|+.++|. ||++ T Consensus 1 ~r~~~dg~~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~---~~~Glspi~~a~~~i~~~~aa~~~~~~~f~-Ng~~ 76 (219) T protein:vir:98 1 MRVCKDGNYKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQ---QVYGSPDYVGGITSALLNSDATIFRRRYYS-NGAH 76 (219) T ss_pred CceeecCeEEEEEecceecCCceeEEeccccEEEecCCCCCC---CcceecHHHHHHHHHHHHHHHHHHHHHHHh-cCCC Confidence 333444554433321 1233557789999999997543222 237999999999999999999999999996 5789 Q ss_pred ceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc-----CCCceeeeccCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 304 PEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS-----GGKFTWIDFKGKRRDMQFKELAEFVAR 378 (945) Q Consensus 304 PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL-----~~G~k~~pLs~sp~D~QflE~rk~~~e 378 (945) |+|||+++. +.++++++++++++|++..+++|+++++++ ++|++|++++++++|+||+|+++++++ T Consensus 77 p~gil~~~~---------~~l~~e~~~~~~~~~~~~~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~ 147 (219) T protein:vir:98 77 MGFILYSTD---------PDMTEEMEDEIAERIRDSKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQ 147 (219) T ss_pred CceEEEeCC---------CCCCHHHHHHHHHHHHHhcCcccccceeEecCCCCccceeEEEccCCHHHHHHHHHHHhhHH Confidence 999998752 368999999999999997766787777666 579999999999999999999999999 Q ss_pred HHHHHhcCChhhccccc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHH Q lcl|Aclame:pro 379 KICAVYQVSPQDVGILE--GSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKER 451 (945) Q Consensus 379 eIA~aFGVPP~lLG~~e--~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~k 451 (945) +||++|||||++||+.+ .++++|+|++.+.|+++||+||+++||++||+.+.-. .+.+++|+.....|.. T Consensus 148 eIa~~fgVPp~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~~~---~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 148 DVLTSHRFPPGLSGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYEIK---SALKVNFKQPEKRDKN 219 (219) T ss_pred HHHHHhCCCHHHcccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC---CccEEeecCcccccCC Confidence 99999999999999864 4579999999999999999999999999999754321 2357888877777644 No 106 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.94 E-value=9.5e-27 Score=163.26 Aligned_cols=403 Identities=10% Similarity=0.019 Sum_probs=227.5 Q ss_pred cccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccc Q lcl|Aclame:pro 78 VPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYY 157 (945) Q Consensus 78 ~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~ 157 (945) +-...-+...--.+....+..+.. + ..+... ...-+...+.+++.++++|+.+|+++-+-++.+.- ++.+. T Consensus 1 ~~~~D~~~~~~~~~g~~~~~~~~~-~--~~~~~~-~~~~l~a~Y~~~~l~~~~vd~~a~d~~r~~~~i~~--~d~~~--- 71 (437) T protein:vir:52 1 MKFFDGIKSLALKLGSKQEQTYYS-P--SLSLTD-DLVQLEALWRDNWIANKVCIKRPEDMVRNWREIYS--NDLNS--- 71 (437) T ss_pred CchhhhhHhHHhcCCCccccceee-c--Cccccc-cHHHHHHHHHhCchhhHHhhcchHHhhcCCceEec--CCCCH--- Confidence 111000000000010001111111 1 111111 12234455678999999999999999999998741 11111 Q ss_pred cchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC---------CCeEEEEEEcCCceeEEEE Q lcl|Aclame:pro 158 LKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE---------QGNLVAITPVDGTTIKPIL 228 (945) Q Consensus 158 ~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~---------~G~pveL~pLdPs~Vtv~~ 228 (945) .....+...+++ ..+|+.+...+ .+.-++|++++++..+. .|.+.+|.++++..|++.. T Consensus 72 ----~~~~~~~~~~~~-------l~~~~~l~~a~-~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~ 139 (437) T protein:vir:52 72 ----KQLDLFTKFERS-------LKLRETLTKAL-QWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTG 139 (437) T ss_pred ----HHHHHHHHHHHh-------hcHHHHHHHHH-HhcccccceEEEEEecCCCcccccccCCceeEEEEechhhccccc Confidence 111123333332 23455555544 44456677787777665 3788999999999987532 Q ss_pred cCCC-------ceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 229 SEDT-------GIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) Q Consensus 229 d~dG-------~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnG 301 (945) ..+. +.+..|. ...+.....+.++.++|+.....+.....+.|.|.++.+.+.|.....+.......+.++. T Consensus 140 ~~~~dp~s~~fg~p~~y~-v~~~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~ 218 (437) T protein:vir:52 140 TKDDDVLSPNFGRYSEYS-ILGGSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESK 218 (437) T ss_pred cccccccccccCcceEEE-EecCCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcC Confidence 2211 2233343 3344455678888999987554444444557999999999999999999999888887654 Q ss_pred CCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKIC 381 (945) Q Consensus 302 a~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA 381 (945) .. ++.+++. ...++....+.+++.++....+.+.++.++++.+-+|..++.+..+.. +......++|| T Consensus 219 ~~---v~k~~~l-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~sgl~--~~l~~~~~~ia 286 (437) T protein:vir:52 219 ID---IFKIAGL-------SDKIAAGMENEVASVISAVQEIKSATNSLLLDAENEYDRKELTFTGLK--DLLTEFRNAVA 286 (437) T ss_pred CC---ceecchH-------HHHhcCCcHHHHHHHHHHHHHhcCCCceEEEcCCcceEEEecCcCCHH--HHHHHHHHHHH Confidence 32 3444321 122332223444455554444455677788898888888877766544 67778889999 Q ss_pred HHhcCChhhcccccCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHH-- Q lcl|Aclame:pro 382 AVYQVSPQDVGILEGSNKATAEVMASLTKA-------KGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERD-- 452 (945) Q Consensus 382 ~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~-------~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~ke-- 452 (945) +++|||..+|.....+..++.++....|+. ..+.|.++.+-..+-+..+.. ...++.++|+.....+.++ T Consensus 287 aa~~iP~t~L~G~s~~Glasge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~-~~~~~~~~f~pL~~~s~keka 365 (437) T protein:vir:52 287 GAADMPVTILFGQSVSGLASGDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGG-LPADWWFEFVPLTTVKQEQQI 365 (437) T ss_pred HHhcCchhhhcCcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcceEEeCCcCCcCHHHHH Confidence 999999988855555556777878888876 456666666655554332221 1236889999887776544 Q ss_pred -----HHHHHHHHHhCCCcCHHHHHHHHhC----CCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCC Q lcl|Aclame:pro 453 -----WWNIIQGQLNTGFRSINEARMEKGL----EPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQG 523 (945) Q Consensus 453 -----rae~~~~~v~~GimT~NEaRe~lGl----pPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~ 523 (945) +++++.+++++|+++++|+|+++.- +.++..|.. .....+...+...++..+++.+++ T Consensus 366 e~~~~~a~a~~~~~~~g~i~~~e~r~~L~~~g~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 432 (437) T protein:vir:52 366 NMLNTFATAANTLIQNGVLNEYQIANELRESGLFANISAEHIE-------------ELKNADEFAGNFEEPEKMEGAQVQ 432 (437) T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCccccc-------------cccCCCCCCCccCCCCCCCCCCCC Confidence 4556888899999999999998742 223222110 000000000000000011111000 Q ss_pred CCCCC Q lcl|Aclame:pro 524 GGVDE 528 (945) Q Consensus 524 g~~dd 528 (945) .+.+. T Consensus 433 ~~~~~ 437 (437) T protein:vir:52 433 NSEDQ 437 (437) T ss_pred CCCCC Confidence 00000 No 107 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.93 E-value=9.2e-26 Score=157.85 Aligned_cols=468 Identities=11% Similarity=0.038 Sum_probs=245.8 Q ss_pred cccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccc----cccccccCC-----CCCccccc--Ccc-cce--- Q lcl|Aclame:pro 36 RGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKII----VPYNHQEPP-----FKFNLFEY--SPE-SLM--- 100 (945) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i----~p~~~r~pp-----~~f~L~~~--s~~-sl~--- 100 (945) -...-|.-+|-+||..|.- ..|.-+|.+.- ..-+|...| ....-..+ ... .+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 68 (532) T protein:vir:94 1 MADTDPTPRPEITYATLQQ------------AQRVDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGR 68 (532) T ss_pred CCCCCCCCCcceehhhhhh------------HhhhhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccCccc Confidence 2233466778889876642 22222322220 111111111 00000000 000 000 Q ss_pred ---eccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCcc Q lcl|Aclame:pro 101 ---YLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPY 177 (945) Q Consensus 101 ---~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~ 177 (945) ....|..+..+....++ ..+.+++.++.+|+.+|+++-.-++.+.-..++ +.. ....+.++ .. T Consensus 69 ~~~~~~~~~~~~~~~~~~l~-a~Y~~~~l~r~~Vd~~aed~~r~~~~i~~~~~~--~~~--------~~~~~~i~---~~ 134 (532) T protein:vir:94 69 NGRNALSFVEATSWPGFPTL-ALLAQLPEYRTMHETPADECVRAWGKITCSSKD--ELA--------ADKATRIT---QK 134 (532) T ss_pred ccccccccccccccchHHHH-HHHHcCchhhhhhccchHHHhhCCceEeeCCcc--ccc--------hHHHHHHH---HH Confidence 00123333344444444 445679999999999999999988887421111 100 01111121 11 Q ss_pred CChHHHHHHHHHHHHHHHhccCCeEEEEEec-------------------CCCeEEEEEEcCCceeEEEEcCCC------ Q lcl|Aclame:pro 178 FSEVNSWEYLLGMVLDDILTIDRGAIVKIRD-------------------EQGNLVAITPVDGTTIKPILSEDT------ 232 (945) Q Consensus 178 mT~~eFwetli~~Lv~dlLl~Gna~i~iird-------------------~~G~pveL~pLdPs~Vtv~~d~dG------ 232 (945) .+....|+.+...+.+. .++|.+++++... ..|.+.+|.+++|.+|++...... T Consensus 135 ~~~l~v~~~l~~a~~~~-rlyG~a~i~i~v~~~~~~~~~~~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~ 213 (532) T protein:vir:94 135 LEQYNVRTLVRTVVIHD-QAYGGAHVFPHLKMDGDSVPADAPLLLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPS 213 (532) T ss_pred HHhhhHHHHHHHHHHhh-hcccceEEEEEeccCCccccccccccccccccccceeeEEEeechheecccccccccccccc Confidence 12234455555555444 4556555544322 234567899999999887532211 Q ss_pred -ceEEEEEEeeCCceeeeecccceeeeeeccCCCCc---cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEE Q lcl|Aclame:pro 233 -GIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVY---MYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGIL 308 (945) Q Consensus 233 -~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~---~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGIL 308 (945) +.+..| +...| ..+.++.++|+...+.++.. ...+|.|.++.+...|.....+............. . ++ T Consensus 214 fg~P~~y-~v~~g---~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~--~-v~ 286 (532) T protein:vir:94 214 FYKPDSW-IATSG---KKIHSSRIHTVVGRPVGDMLKAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQFSM--T-NL 286 (532) T ss_pred cCCceeE-EEccC---eeeccceEEEecCCCchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c-ee Confidence 112223 22223 24678889998766555532 22359999999999999988888887776654322 1 23 Q ss_pred EeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCC-CceeeeccCChhhHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 309 AIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGG-KFTWIDFKGKRRDMQFKELAEFVARKICAVYQVS 387 (945) Q Consensus 309 s~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~-G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVP 387 (945) .+. ....++.+..+.+.+.++....+....++++++. +-+|..++.+..+. .+......+.||++.||| T Consensus 287 k~~--------~a~~ls~~~~~~~~~r~~~~~~~~~n~g~~~id~~~e~~e~~~~~lsgl--~~~l~~~~~~iAaa~~IP 356 (532) T protein:vir:94 287 ATD--------MAQLLAPGGAQSLDARLQLFNLYRDNRNIGALDKGTEEIQQTNTPLSGL--DSLQAQSQEQMAAVSHIP 356 (532) T ss_pred eec--------hHHhhcchhHHHHHHHHHHHHhhcCCccceEEcCCCceeEEEecccCCH--HHHHHHHHHHHHhHhCCC Confidence 321 1234555666777777776655533344556654 46777776665554 367788888999999999 Q ss_pred hhhc-ccccCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHH------ Q lcl|Aclame:pro 388 PQDV-GILEGSNKATAEVMASLTKA-------KGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDW------ 453 (945) Q Consensus 388 P~lL-G~~e~gT~SN~Eqq~~~F~~-------~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~ker------ 453 (945) ..+| |....+-.++.+.....|+. ..+.|.++.+-+.+.+..+-. ...++.|+|+.+...+.+++ T Consensus 357 ~t~LfG~sp~GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~~g~-~~~d~~~~f~pL~~~s~kEkAei~~~ 435 (532) T protein:vir:94 357 LVKLLGITPNGLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQLSEYGQ-IDPGLAWEWSPLMELDDKELAEVRQL 435 (532) T ss_pred eeeeecCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceEEeCCCCCCCHHHHHHHHHH Confidence 9965 55444444555666666655 346777777766665433211 12368899998777766554 Q ss_pred -HHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccch-hhccCCCCcccccccCCCCCCCCCCCCCCcc Q lcl|Aclame:pro 454 -WNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQA-KAQQGAMPPQLAQAMADQPSQQGGGVDENSS 531 (945) Q Consensus 454 -ae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a-~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~ 531 (945) ++++++++++|++++||+|+.++.+|..|.+...........++... ....+..+ +.........++...+.|+.+. T Consensus 436 ~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~ 514 (532) T protein:vir:94 436 NASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALN-PPATAPQTPNPQPDSEDDQTDN 514 (532) T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchhhhhcccccC-CCCCCCCCCCCCCCCCCCCCCC Confidence 45668889999999999999999999877654432221111111111 11111111 1111111111222223333333 Q ss_pred ccchhHHHHHHHHHHHHhhhhhhh Q lcl|Aclame:pro 532 VPSEQKNAGLEVLRNLFKSLDANA 555 (945) Q Consensus 532 ~~se~k~a~~~~lr~~~k~l~a~~ 555 (945) .+..+.+.+. . .++-+.. T Consensus 515 ~~~~~~~~~~-~-----~~~~~~~ 532 (532) T protein:vir:94 515 QPDAQADPAQ-N-----DQPVGNR 532 (532) T ss_pred ccCCCccccc-c-----CCCcCCC Confidence 2222222111 0 0111111 No 108 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.91 E-value=7.7e-24 Score=147.31 Aligned_cols=457 Identities=10% Similarity=0.077 Sum_probs=219.9 Q ss_pred CCCCcc--------hhhh-hhhhhccc------eeeeeeeeeecceeeecccc---ccccccccCCCCCcccccCcccce Q lcl|Aclame:pro 39 DYPGFK--------PLLT-YRALAWNS------TVVYSIIIFRKNQVLKKEKI---IVPYNHQEPPFKFNLFEYSPESLM 100 (945) Q Consensus 39 ~~~~~~--------~~~~-~~~~~~~~------~~~~~~~~~k~n~l~kK~K~---i~p~~~r~pp~~f~L~~~s~~sl~ 100 (945) -+|-|+ |-.. -++-.|+- .-++.+.-...+....-++. +.+......+ .. -+++.+.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-a~d~~~~~~~ 78 (537) T protein:vir:10 1 MFKFWRKKTVEAVQSSIAERIEPRVGIFGAGDDEKPFTRAQLVHQTMMAIRDHAIAMMPKVDGSHP-DM-AMDGLDVEGG 78 (537) T ss_pred CCCccccccccccccccccccccccCCCcccchhhHHHHHHhhhhccCCCCCccCccccccccccc-ch-hccccccchh Confidence 111110 0000 00000000 00111111111111110000 0000000000 00 0000000000 Q ss_pred e------------ccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHH Q lcl|Aclame:pro 101 Y------------LPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNIL 168 (945) Q Consensus 101 ~------------lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~ 168 (945) . +.+|.-+..+....+ ...+.+++.++.+|+++|+++.+-++++.- .++.+.. .. ....+. T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~a~Y~~~~l~r~iVd~~A~d~~r~~~~i~~--~~~~~~~-~~---~~~~l~ 151 (537) T protein:vir:10 79 TFSAYANPNLSEGLVLWYAQQAFIGHQM-CALIATHWLVNKACSQMPRDAMRKGYKIIS--DDGNELD-PK---DAKFID 151 (537) T ss_pred hhhhhccccccchhhhhccccCCccHHH-HHHHHhCchhhhhhhhhhHHhhcCCceeec--CCccccc-HH---HHHHHH Confidence 0 000111112222233 244568899999999999999999888742 1111100 00 001122 Q ss_pred HHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEE-EecC---------------CCeEEEEEEcCCceeEEEE---- Q lcl|Aclame:pro 169 EFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVK-IRDE---------------QGNLVAITPVDGTTIKPIL---- 228 (945) Q Consensus 169 ~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~i-ird~---------------~G~pveL~pLdPs~Vtv~~---- 228 (945) ..+. ....|+.+...+.+..+ +|++++++ +... .|.+.+|.+++|.++.+.. T Consensus 152 ~~~~-------~l~~~~~l~~a~~~~rl-yG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~k~l~vidp~~~~~~~~~~~ 223 (537) T protein:vir:10 152 RYDR-------AFNIKKHAIQFVRKGRI-FGIRIALFKVDSPDPYYYEKPFNIDGVMPGAYKGIVQIDPYWCAPLLDAQA 223 (537) T ss_pred HHHH-------HhhHHHHHHHHHHhccc-ccceEEEEeecCcCCcccccccccccccccceeEEEEechhhcccccchhh Confidence 2222 23456666666655555 55555443 3322 2345678889998887632 Q ss_pred --cCCC---ceEEEEEEeeCCceeeeecccceeeeeeccCCCCc---cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 229 --SEDT---GIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVY---MYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 229 --d~dG---~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~---~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) +... +.+..|. ..| ..+.++.++|+.....++.. ..+.|.|.++.+...|.....+.......+.++ T Consensus 224 ~~dp~sp~fg~P~~y~--v~g---~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~ 298 (537) T protein:vir:10 224 SSNPVSMHFYEPTYWL--ING---KKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIMERVYAAERTANEGPMLAMTK 298 (537) T ss_pred hccCCccccCCceeee--ecC---eEecceeEEEecCCCCchhhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 1111 1222332 223 34677888888655544432 234699999999999999988888888888776 Q ss_pred CCCceEEEEeccccccccccchhc-cHHHHHHHHHHHHHHhcCcccCcccccCC-CceeeeccCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQL-SREQLESIQRQLQAIMMGDYTQVPILSGG-KFTWIDFKGKRRDMQFKELAEFVAR 378 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~L-S~Eq~erlKe~we~~~sG~Nagkp~VL~~-G~k~~pLs~sp~D~QflE~rk~~~e 378 (945) ... ++.++.. +.+ ++++ +.+.++....+.+..++++++. +-+|..++.+..+.. +......+ T Consensus 299 ~~~---v~k~~~~--------~~l~~~~~---~~~r~~~~~~~r~n~g~~~id~e~e~~e~~~~~lsgl~--~~l~~~~~ 362 (537) T protein:vir:10 299 RQT---VLKVDAA--------QVLANKQQ---FDETMSWWTATRDNYQVRVVDKDNEDVVQIDTTLNDLD--KVIMNQYQ 362 (537) T ss_pred CCc---eeeechH--------HhhcCHHH---HHHHHHHHHhhcCCcceeEecCCCceeEEEeccCCCHH--HHHHHHHH Confidence 543 3333211 122 2333 3333333334433334456665 578887776655543 67788888 Q ss_pred HHHHHhcCChhhc-ccccCCCcccHHHHHHHHHHH------HHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHH Q lcl|Aclame:pro 379 KICAVYQVSPQDV-GILEGSNKATAEVMASLTKAK------GLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKER 451 (945) Q Consensus 379 eIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~~------tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~k 451 (945) .||.+.|||..+| |....|..++.+.....|+.. .|.|.+..+.+.+.+..+.. ..++.++|+.+...+.+ T Consensus 363 ~iAa~~~IP~t~L~G~sp~GlnatGe~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~~~~--~~~~~i~f~pL~~~s~k 440 (537) T protein:vir:10 363 LVCAIARTPAPKMLGTVPTGFNSTGDYEEASYHEECESTQDDMRPLIDRHHQLVCRSHLRK--RIRVKVEFPPMDAPKES 440 (537) T ss_pred HHHhhhCCCceeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcceEEEeCCCCCCCHH Confidence 9999999999965 554455556666666666533 47888887777766544322 34688889888878777 Q ss_pred HHHH-------HHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccch-hhccCCCCcc----ccccc-CCC Q lcl|Aclame:pro 452 DWWN-------IIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQA-KAQQGAMPPQ----LAQAM-ADQ 518 (945) Q Consensus 452 erae-------~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a-~~~~~a~~~~----~~~~~-~d~ 518 (945) ++++ ++++++++|++++||+|+.++.+|..|.+..... ..+++... ..+....+.. .+... ..+ T Consensus 441 EkAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~---~~~ed~e~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (537) T protein:vir:10 441 ERADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPA---MRPTDAEDIDVDDEGKPVRIIEDQPAPSEMFG 517 (537) T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCC---CChhhhhcccCCccCCcCCCCCCCCCccccCC Confidence 6665 5888999999999999999999877654432211 11111100 0000000000 00000 000 Q ss_pred CCCCCCCCCCCccccchhHH Q lcl|Aclame:pro 519 PSQQGGGVDENSSVPSEQKN 538 (945) Q Consensus 519 ~~~~~g~~dd~e~~~se~k~ 538 (945) ..+.+...++.....+..++ T Consensus 518 ~~~~~~~~~~~~~~~a~~~~ 537 (537) T protein:vir:10 518 ATSSGESANDPRDSGAAFED 537 (537) T ss_pred CCccccccCCCccCccccCC Confidence 11111111111000000111 No 109 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=99.85 E-value=1.3e-20 Score=129.70 Aligned_cols=421 Identities=12% Similarity=0.028 Sum_probs=235.9 Q ss_pred eccccccccccccCCCCC-cccccCcccce----ecccc-CCcc--cchhhhhhHHhhhccHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 72 KKEKIIVPYNHQEPPFKF-NLFEYSPESLM----YLPSI-SDPD--AFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKEL 143 (945) Q Consensus 72 kK~K~i~p~~~r~pp~~f-~L~~~s~~sl~----~lps~-s~p~--~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~ 143 (945) -.++ --||.+- .+....+..+. .+... ..|. ..-...++++...+.+.|.+|++.+...|.+++| T Consensus 1 ~~~~-------~~~~~p~~~~g~~~~~~~~~~~~~~~~~e~~~~lr~~~~~~ly~~m~e~D~~i~s~l~~rk~av~~~~w 73 (469) T protein:vir:10 1 MTER-------VKTAAPVSEAGYVFGSGVVDGWTVWDPFEQTPELQWPQSVAVYSRMDNEDSRVTSLLEAISLPIRSTPW 73 (469) T ss_pred CCCc-------ccCCCCccchhhhhhcccccchhhccccccccccccccchHHHHHHHhhChHHHHHHHHHHHHHhcCCc Confidence 1111 1111111 11111111110 00000 0000 0012346666555789999999999999999999 Q ss_pred EEEEeccCcccccccchhhcccHHHHHHhccCcc---------CChHHHHHHHHHHHHHHHhccCCeEEEEEecCC---- Q lcl|Aclame:pro 144 EIYKHIEDKHVNYYLKRIRDARNILEFLERPDPY---------FSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQ---- 210 (945) Q Consensus 144 ~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~---------mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~---- 210 (945) .|.+...+.. . ...+...|..+... ......|...+..++.+.+.+|-...+++.... T Consensus 74 ~v~p~~~~~e-------~--~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~ 144 (469) T protein:vir:10 74 RIRANGASDE-------V--TEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSP 144 (469) T ss_pred eEecCCCCHH-------H--HHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccC Confidence 9975433211 1 11122222221110 011123555666777777889999999887643 Q ss_pred -C--eEEEEEEcCCceeE-EEEcCCCceEEEEEEee-----------CCceeeeecccceeeeeeccCCCCccCcccccH Q lcl|Aclame:pro 211 -G--NLVAITPVDGTTIK-PILSEDTGIVVGYVQEV-----------DGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPP 275 (945) Q Consensus 211 -G--~pveL~pLdPs~Vt-v~~d~dG~~~~~Yv~~~-----------dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSP 275 (945) | .+..|.+.++.++. ...+.+++... +.+.. .+.....+++...|+|++...++. ++|.+. T Consensus 145 dG~~~~~~l~~rp~~~i~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~---p~g~gL 220 (469) T protein:vir:10 145 DGRFWLRKLAPRPQWTISKFNVAPDGGLES-IEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQ---WQGKSI 220 (469) T ss_pred CCceeeeeeeecCcccceeeeeccCCceee-eeecCcccccccccccCCCCccccccCcEEEEEecCCCCC---cccchh Confidence 4 35678888887663 34455554332 22211 122234566667777776655443 578899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCc Q lcl|Aclame:pro 276 IEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKF 355 (945) Q Consensus 276 I~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~ 355 (945) +..+......-....++-+.|..+.|+ |--|... +...++++++.+.+...+...|.+++ ++++.|+ T Consensus 221 lr~~~~~~~fK~~~~~~w~~f~EryG~-P~~vgky----------~~~a~~~ek~~l~~a~~~~~~g~~a~--~iip~~~ 287 (469) T protein:vir:10 221 LRSAYKHWLLKDKLLRIEAATAERNGM-GIPVGTA----------SSATDEDEVRKMAALARSVRGGINAG--VGLAQGQ 287 (469) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC-cceEEec----------CCCCCHHHHHHHHHHHHHHhcCCceE--EEccCCc Confidence 999999988888999999999888886 4444443 34567888999998888887665554 3467888 Q ss_pred eeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-- Q lcl|Aclame:pro 356 TWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-- 433 (945) Q Consensus 356 k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-- 433 (945) ++.-+..+.....|.+..++..++|+.+.--.- +-....+++++..+. ........+.-.+++++..+|+.|.+.. T Consensus 288 ~ie~~ea~g~~~~~~~li~~~d~~Isk~iLG~t-lTs~~~gGS~a~~~v-h~ev~~d~~~sDa~~i~~tln~~li~~l~~ 365 (469) T protein:vir:10 288 ILELLGVSGNLPDIRRAIEGHDRSIALSGLAHF-LNLDGKGGSYALASV-LEDPFTQAVHAYATSICRIANQHIIEDLVD 365 (469) T ss_pred eEEEeecCCCchHHHHHHHHHHHHHHHHHhccc-ccccCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 877666655566788999999999988763321 211223344443333 4445577888899999999997664431 Q ss_pred ---ccc--eeEEEeechhhcCHHHHHHHHHHHHhCCC-----cCHHHHHHHHhCCCCCCccccccccccccccccchhhc Q lcl|Aclame:pro 434 ---NEK--DIKLWFKEDDLEKERDWWNIIQGQLNTGF-----RSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQ 503 (945) Q Consensus 434 ---~~~--g~~f~fd~~~l~D~kerae~~~~~v~~Gi-----mT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~ 503 (945) +.. .-+|.|+... .+.+..++.++.+++.|. .+.+.+|+.+|+|+...++....+.. T Consensus 366 lN~g~~~~~P~~~~~~~e-~~~~~~a~~i~~l~~~G~~~~~~~~~~~~~e~~gip~~~~~~~~~~~~~------------ 432 (469) T protein:vir:10 366 INFGVDTPAPVLTFDPIG-SRQDLTAAAVKLLYDAGVFDDDPAVKRAIRQRFNLPSELNDTPSAEPEE------------ 432 (469) T ss_pred hcCCCCCCccEEEecCCC-CcHHHHHHHHHHHHhcCCccCccccHHHHHHHhCCCCCCCCcccccchh------------ Confidence 111 1366776544 456778899999999998 45678999999997766544322110 Q ss_pred cCCCCcccccccCCCCCCCCCCCCCCccccchhHHHHHHH Q lcl|Aclame:pro 504 QGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAGLEV 543 (945) Q Consensus 504 ~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a~~~~ 543 (945) ..+.+.+.+.+. .....+..+..++.+....+...++ T Consensus 433 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~da 469 (469) T protein:vir:10 433 PAAVPNQSAAPA---RTRSSGNADARARAPKADQGVLFDA 469 (469) T ss_pred cccCCCCCcccc---ccCCCCCcccccccCCChHHhhccC Confidence 001111110000 0001111111112222222222111 No 110 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=99.85 E-value=3.2e-19 Score=121.98 Aligned_cols=494 Identities=11% Similarity=0.032 Sum_probs=243.2 Q ss_pred eeeeeeecceeeeccccccccccccCCCC-----CcccccCcccceec-cccCCcccchhhhhhHHhhhccHHHHHHHHH Q lcl|Aclame:pro 60 YSIIIFRKNQVLKKEKIIVPYNHQEPPFK-----FNLFEYSPESLMYL-PSISDPDAFFLINLFRKYRFNNDSKLIKVSE 133 (945) Q Consensus 60 ~~~~~~k~n~l~kK~K~i~p~~~r~pp~~-----f~L~~~s~~sl~~l-ps~s~p~~~~~~~v~~~~Am~nsaV~aCV~i 133 (945) -+.|+=+-.|-++++....+...+..... .+...-+|..|..+ ..-..++-.....+++....+.+.|.+|++. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~e~D~~i~s~l~~ 80 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQAQAELFMDMEERDAHLFAEMSK 80 (528) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 33333333333343332222221111100 01100111111110 0000011111123344433478899999999 Q ss_pred HHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhc-cCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCC-C Q lcl|Aclame:pro 134 IPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLER-PDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQ-G 211 (945) Q Consensus 134 IA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~r-PNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~-G 211 (945) +...|.+++|.|.....+... .......+...|++ |+ |..++..|+ +...+|-...+++.... | T Consensus 81 Rk~av~~~~w~I~p~~~~~~~-----~~~~a~~v~~~l~~~~~--------f~~~i~~~l-da~~~G~s~~Ei~w~~~~g 146 (528) T protein:vir:10 81 RKRAVLGLDWTIEPPRNASAA-----EKADAEYLHELLLDLEG--------IEDLMLDCM-DGVGHGYSAIELDWSLQGR 146 (528) T ss_pred HHHHHhcCCceEecCCCCCHH-----HHHHHHHHHHHHhCCcc--------HHHHHHHHH-hhhhhcceeEEEEEeecCC Confidence 999999999999754332211 11122234445542 32 445666554 46779999998876543 3 Q ss_pred --eEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 212 --NLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFI 289 (945) Q Consensus 212 --~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aa 289 (945) .|..+.++++.++.+. .+++..+.... ++.....+++...++|++...++ .++|.+.+..+......-... T Consensus 147 ~~~~~~~~~r~~~~f~~~--~~~~~~l~~~~--~~~~g~~l~~~k~iv~~~~~~~g---~p~g~gLlr~~~w~~~fK~~~ 219 (528) T protein:vir:10 147 EWLPQAFDHRPQSWFQLN--PDDQDELRLRD--NSIAGEVLQPFGWIMHKPRSRSG---YVARSGLFRVLAWPYLFKHYS 219 (528) T ss_pred ceeEEEeeeecccceeec--cCCCcEEeccC--CCCCceeecCCCeEEEeecCCCC---CccccchHHHHHHHHHHHHhh Confidence 4668999999877654 34444333322 22223455666666666554443 347888899999988888888 Q ss_pred HHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCC-hhhHH Q lcl|Aclame:pro 290 DKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGK-RRDMQ 368 (945) Q Consensus 290 ee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~s-p~D~Q 368 (945) .++-+.|..+.|+ |--+..+ +...++++++++.+.+.+..+ +++ ++++.|+++.-+..+ ..-.. T Consensus 220 ~~~w~~f~E~yG~-P~~igky----------~~~a~~~ek~~L~~al~~i~~--~~~--~iiP~~~~ie~~ea~~~~~~~ 284 (528) T protein:vir:10 220 TADLAEMLEIYGL-PIRLGKY----------PPGTPDEEKVTLLRAVTGLGH--AAA--GIIPESMSIDFQEASKGSAEP 284 (528) T ss_pred HHHHHHHHHHcCC-CeEEEec----------CCCCCHHHHHHHHHHHHHHhh--CcE--EEecCCceeEEeecCCCChhH Confidence 8888899888886 5445443 334688889999888877643 233 455666655544422 22235 Q ss_pred HHHHHHHHHHHHHHHhcCChhhccc-cc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---c-------c Q lcl|Aclame:pro 369 FKELAEFVARKICAVYQVSPQDVGI-LE--GSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR---N-------E 435 (945) Q Consensus 369 flE~rk~~~eeIA~aFGVPP~lLG~-~e--~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~---~-------~ 435 (945) |.+..++..++|+.+.- -..+-.. .+ .|+++-.+. ........+.-.++.++..+|+.|.+.. . . T Consensus 285 f~~li~~~d~~Isk~iL-GqtlTs~~~~g~~gS~Alg~v-h~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~ 362 (528) T protein:vir:10 285 FMAMMRWCDDSMSKAIL-GGTLTSQTSESGGGAYALGQV-HNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDAR 362 (528) T ss_pred HHHHHHHHHHHHHHHHh-hhhhhccccccccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc Confidence 78888999999988762 1222111 11 123332222 3344567788889999999997653321 1 1 Q ss_pred ceeEEEeechhhcCHHHHHHHHHHHHhCCC-cCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccc Q lcl|Aclame:pro 436 KDIKLWFKEDDLEKERDWWNIIQGQLNTGF-RSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQA 514 (945) Q Consensus 436 ~g~~f~fd~~~l~D~kerae~~~~~v~~Gi-mT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~ 514 (945) ..-+|.|+.....|.+++++.++++++.|+ ++..++|+.+|+|....++..+.+....+. .+....+...... T Consensus 363 ~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~gip~p~~~e~~~~~~~~~~~------~~~~~~~~~~~~~ 436 (528) T protein:vir:10 363 RAPRLVFDLKDRADLAAMATSLPPLVKLGVQVPVNWVQEQLGIPLPANGEAVLGDQAGAGI------AQLSRRPGPRIAA 436 (528) T ss_pred ccceEEecCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCCcccccCCCcccc------cccCccccccccc Confidence 123688888999999999999999999998 899999999999876665554432211110 0011111111000 Q ss_pred cCCCCCCCCCCCCCCccccchhHHHHHHHH-HHHHhhhhhhhhHHHHHhhcc-CCccccccchHHHHHHHHhhh----hH Q lcl|Aclame:pro 515 MADQPSQQGGGVDENSSVPSEQKNAGLEVL-RNLFKSLDANASENLKQVIEL-TNDDNYLKEKELLTRVLKSVG----LD 588 (945) Q Consensus 515 ~~d~~~~~~g~~dd~e~~~se~k~a~~~~l-r~~~k~l~a~~~~~~~~~~dl-~n~~~~l~e~~~~~~~~~~~~----~~ 588 (945) .+....+ ...+.+ +..+...... +.+......-..+ +.+.++. .+.++ + .+++....-+.. .+ T Consensus 437 ~~~~~~~---~~~~~~----~~d~~~~~~~~~~~~~~~~~~l~~-i~~~l~~~~s~ee-~--~~~L~~l~~~~d~~~l~~ 505 (528) T protein:vir:10 437 LAQVIGP---RYRDQE----ALDQVLASLPAQDMQNQADSLVAP-LLDVISRGGSEAE-L--LGALAEAFPDMDDSALAD 505 (528) T ss_pred ccccccc---cccccc----hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHH-H--HHHHHHHhhcCCHHHHHH Confidence 0000000 000000 0000000000 0011111111111 1111111 11111 1 111111111111 22 Q ss_pred HHHHhhhhhhhc---ccccCCCc Q lcl|Aclame:pro 589 SVSEFIENNSQT---DVEVSAKD 608 (945) Q Consensus 589 ~~~~~~~~~~~~---~~~~~~~~ 608 (945) .|+..+-++.-. ++.-.+-| T Consensus 506 ~l~~a~~~A~l~G~~~~~~e~~~ 528 (528) T protein:vir:10 506 ALHRLLFVADTWGRLNGTLDRID 528 (528) T ss_pred HHHHHHHHHHHhhhhhccccccC Confidence 222222111100 11111111 No 111 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=99.84 E-value=1.6e-18 Score=118.17 Aligned_cols=493 Identities=10% Similarity=0.018 Sum_probs=240.5 Q ss_pred eeeeeeecceeeeccccccccccccCCCC-----CcccccCcccceec-cccCCcccchhhhhhHHhhhccHHHHHHHHH Q lcl|Aclame:pro 60 YSIIIFRKNQVLKKEKIIVPYNHQEPPFK-----FNLFEYSPESLMYL-PSISDPDAFFLINLFRKYRFNNDSKLIKVSE 133 (945) Q Consensus 60 ~~~~~~k~n~l~kK~K~i~p~~~r~pp~~-----f~L~~~s~~sl~~l-ps~s~p~~~~~~~v~~~~Am~nsaV~aCV~i 133 (945) -+.|+=+-.|-++.+....+...+..... .+...-+|..+..+ ..-..++-.....+++....+.+.|.+|++. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e~D~~i~s~l~~ 80 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 33333333333332222111111111000 00000011111110 0000011111223444443468999999999 Q ss_pred HHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCC- Q lcl|Aclame:pro 134 IPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQG- 211 (945) Q Consensus 134 IA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G- 211 (945) +...|.+++|.|.+...+... .......+...|+ .|+ |..++..|+ +...+|-...+++....| T Consensus 81 Rk~av~~~~w~I~p~~~~~~~-----~~~~a~~v~~~l~~~~~--------~~~~i~~~l-da~~~G~s~~Eivw~~~~g 146 (526) T protein:vir:99 81 RKRAILGLDWAVEPPRNASAA-----EKADADYLHELLLDLEG--------LEDLLLDAL-DGIGHGYSCIELEWALQGR 146 (526) T ss_pred HHHHHhCCCceEecCCCCCHH-----HHHHHHHHHHHHhcccC--------HHHHHHHHH-HhhhhcceeEEEEEeecCC Confidence 999999999999754333211 1112233445554 243 455666665 567899999998765543 Q ss_pred --eEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 212 --NLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFI 289 (945) Q Consensus 212 --~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aa 289 (945) .|..+.+.+|.++.+..+ ++...++.. ++.....+++...+.|++...++ .++|.+.+..+......-... T Consensus 147 ~~~~~~l~~r~~~~f~~~~~--~~~~l~~~~--~~~~g~~l~~~k~i~~~~~~~~g---~p~g~gLlr~~~w~~~fK~~~ 219 (526) T protein:vir:99 147 EWMPLAFHHRPQSWFQLNPE--DQNELRLRD--NSPAGEALQPFGWIIHRPRARSG---YVARSGLFRVLAWPYLFRHYA 219 (526) T ss_pred ceeEEEeeeecccceeeccC--CCcEEEecC--CCCCceeecCCCeEEEeecCCcC---CccccchHHHHHHHHHHHHhh Confidence 466899999988775443 333333332 22223445565555555554443 347888899999888888888 Q ss_pred HHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCC-hhhHH Q lcl|Aclame:pro 290 DKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGK-RRDMQ 368 (945) Q Consensus 290 ee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~s-p~D~Q 368 (945) .++-+.|..+.|+ |--+..+ +...++++++++.+.+.+..+ +++ ++++.|+++.-+..+ ..-.. T Consensus 220 ~~~w~~f~E~yG~-P~~igky----------~~~a~~~ek~~L~~av~~i~~--d~~--~iiP~~~~ie~~ea~~~~~~~ 284 (526) T protein:vir:99 220 TSDLAEMLEIYGL-PIRLGKY----------PPGTADEEKATLLRAVTGLGH--AAA--GIIPETMAIDFQQAAQGSSEP 284 (526) T ss_pred HHHHHHHHHHcCC-ceEEEec----------CCCCCHHHHHHHHHHHHHHhh--CcE--EEecCCceeEEeecCCCCHHH Confidence 8888899888885 5455443 334588889999888877643 333 456666665554432 22245 Q ss_pred HHHHHHHHHHHHHHHhcCChhhc---ccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----c-----c Q lcl|Aclame:pro 369 FKELAEFVARKICAVYQVSPQDV---GILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-----N-----E 435 (945) Q Consensus 369 flE~rk~~~eeIA~aFGVPP~lL---G~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-----~-----~ 435 (945) |.+..++..++|+.+. +-..+- +.+..++++..+. ...-....+.-.+++++..+|+.|.+.. . . T Consensus 285 f~~li~~~d~~Isk~i-LGqtlTs~~~~g~~gS~a~g~v-h~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~ 362 (526) T protein:vir:99 285 FLAMMRQSEDAISKAV-LGGTLTSTTSQSGGGAFALGQV-HNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVR 362 (526) T ss_pred HHHHHHHHHHHHHHHH-hhhhhccccccCcchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCcc Confidence 7888899999998875 111221 1111233333332 3344566777889999999997554321 1 1 Q ss_pred ceeEEEeechhhcCHHHHHHHHHHHHhCCC-cCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccc Q lcl|Aclame:pro 436 KDIKLWFKEDDLEKERDWWNIIQGQLNTGF-RSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQA 514 (945) Q Consensus 436 ~g~~f~fd~~~l~D~kerae~~~~~v~~Gi-mT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~ 514 (945) ..-+|.|+.....|.+++++.++++++.|+ ++..++|+.+|+|....++..+.+.....+.. . .+...... T Consensus 363 ~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~Gip~~~~~e~~l~~~~~~~~~~------~--~~~~~~~~ 434 (526) T protein:vir:99 363 RAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILS------R--QHGQRVAA 434 (526) T ss_pred ccceEEeCCCCcccHHHHHHHHHHHHhCCCccCHHHHHHHhCCCCCCCcccccCCCCCCcccc------c--cccccccc Confidence 123678888888999999999999999997 89999999999986655554432221110000 0 00000000 Q ss_pred cCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHhhhhhhhhHHHHHhhccCC-ccccccchHHHHHHHHhhhhH----H Q lcl|Aclame:pro 515 MADQPSQQGGGVDENSSVPSEQKNAGLEVLRNLFKSLDANASENLKQVIELTN-DDNYLKEKELLTRVLKSVGLD----S 589 (945) Q Consensus 515 ~~d~~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n-~~~~l~e~~~~~~~~~~~~~~----~ 589 (945) ... ..+ ...+...+..+...+...+.++..-....+-+.+.++... .++ + .+++....-+...+ . T Consensus 435 ~~~----~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~~~l~~i~~~l~~~~s~ee-~--~~~L~~l~~~ld~~~l~~~ 504 (526) T protein:vir:99 435 LAT----IVG---PRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNRGDSETE-L--LGALAEAFPDMDDSALTDA 504 (526) T ss_pred ccc----ccc---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-H--HHHHHHHhccCCHHHHHHH Confidence 000 000 0000000000001100000001111111111111111111 111 1 11111111111111 1 Q ss_pred HHHhhhhhhh---cccccCCCc Q lcl|Aclame:pro 590 VSEFIENNSQ---TDVEVSAKD 608 (945) Q Consensus 590 ~~~~~~~~~~---~~~~~~~~~ 608 (945) |+..+-++.- .++...+-| T Consensus 505 l~~a~~~A~l~Gr~~~~~e~~~ 526 (526) T protein:vir:99 505 LHRLLFAADTWGRLHGNLDRID 526 (526) T ss_pred HHHHHHHHHHhhhhhhhhcccC Confidence 1111111110 011111111 No 112 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.83 E-value=2.9e-20 Score=127.69 Aligned_cols=390 Identities=11% Similarity=0.039 Sum_probs=201.6 Q ss_pred ccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCccccc Q lcl|Aclame:pro 77 IVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNY 156 (945) Q Consensus 77 i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~ 156 (945) .+... -+... +..+...... .. .+.. .....+...+.+++.++++|+.+|+++-+-.|.|- .+.. T Consensus 1 ~~~~D-~~~n~---~~gg~~~~~~-~~---~~~~-~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~---~~~~--- 65 (422) T protein:vir:10 1 MVKTD-SYANI---FLGGSDGSEI-YG---SLQN-QAPTILASLYADNALVRRIIDTIPETALAAGFHID---GIDD--- 65 (422) T ss_pred Cccch-hhHHH---HcCCCCCccc-cC---cccc-cCHHHHHHHHHhChhhHHHHhhhhHHHhcCCcccc---CCCH--- Confidence 11111 11110 0111111000 00 0111 11233445567899999999999999988888762 1110 Q ss_pred ccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEe-c---------CCCeEEEEEEcCCceeEE Q lcl|Aclame:pro 157 YLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIR-D---------EQGNLVAITPVDGTTIKP 226 (945) Q Consensus 157 ~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iir-d---------~~G~pveL~pLdPs~Vtv 226 (945) + .+ +..-+. ....|+.+...+.+. .++|.+++++.. + ..|.+.+|.++++.+|++ T Consensus 66 --~-~~----~~~~~~-------~l~~~~~l~~a~~~~-rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~ 130 (422) T protein:vir:10 66 --E-PA----FWSRWD-------DLEMTQNINDAWSWA-RLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKV 130 (422) T ss_pred --H-HH----HHHHHH-------HhhHHHHHHHHHHhh-ccccceEEEEEecCCCCccccccccCceeeEEeeccccccc Confidence 0 11 111121 123455555555444 455666655543 3 356677899999999876 Q ss_pred EEcCC------CceEEEEEEeeC-CceeeeecccceeeeeeccCCC---CccCcccccHHHH-HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 227 ILSED------TGIVVGYVQEVD-GAIVAHFDKRDVVLFRQNLTPD---VYMYGYSLPPIEI-LYKVILSDIFIDKGNLD 295 (945) Q Consensus 227 ~~d~d------G~~~~~Yv~~~d-G~~~~~~~a~DVIh~r~n~~~d---~~~~GyGlSPI~a-a~~~I~~~~aaee~~a~ 295 (945) ..... -+.+..|..... ++....+.++.++|+.....|+ ....++|.|++.. +.+.+.....+...... T Consensus 131 ~~~~~dp~s~~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~ 210 (422) T protein:vir:10 131 QTREENPRNARFGEPLTYRITTNESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQ 210 (422) T ss_pred hhcccCccccccCcceEEEEecCCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHH Confidence 43211 123333433322 2233566777788875443332 2233479999986 67889888888888888 Q ss_pred HHHhCCCCceEEEEeccccccccccchhc-cHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHH Q lcl|Aclame:pro 296 YYRKGGSIPEGILAIEPPSYKEGDIYPQL-SREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELA 373 (945) Q Consensus 296 ~F~nnGa~PsGILs~k~g~~~~~k~~~~L-S~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~r 373 (945) .+.++... ++.++... ..+ +......+++.++..... ++.+..++.+++-++.+++.+..+. .+.. T Consensus 211 l~~~~~~~---v~~~~~l~-------~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsgl--~~~~ 278 (422) T protein:vir:10 211 LLKRKQQA---VWKAKGLA-------ELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSVLNSDIGGI--DAFL 278 (422) T ss_pred HHHHhccc---cccchhHH-------HhcCCccchHHHHHHHHHHHHhcCCccceeEecCCcceEEEecccCCh--HHHH Confidence 88776543 33333211 111 122233334444433333 2344445556677888887776654 4778 Q ss_pred HHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccccccceeEEEeechhhcCHH Q lcl|Aclame:pro 374 EFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKAKGLEPLMAT-ISKGFDEVVSEFRNEKDIKLWFKEDDLEKER 451 (945) Q Consensus 374 k~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~~tL~Pll~~-IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~k 451 (945) ....++||++.|||..+| |....+-.++.+.....|+.. |.-+.+. +...+++++.--....++.++|+.+...+.+ T Consensus 279 ~~~~~~iaaa~~IP~t~L~G~s~~Glnatgd~d~~~yyd~-i~~~Qe~~l~p~l~~l~~~i~~s~~~~~~f~pL~~~sek 357 (422) T protein:vir:10 279 DKKFDRIVALSGIHEIILKNKNVGGVSSSQNTALETFHKL-VDRKRNAELLPILEFLIPFIVNAEEWSVEFNPLAQESSK 357 (422) T ss_pred HHHHHHHHhhhCCCeeeeccCCcccccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCcEEEeCCCCCCCHH Confidence 888999999999999977 444333335566666667653 3322221 2222222111111124688999988777655 Q ss_pred H-------HHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCC Q lcl|Aclame:pro 452 D-------WWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGG 524 (945) Q Consensus 452 e-------rae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g 524 (945) + .++++++++++|+++++|+|+.+.-.....+- .. ...+++..... ...++.+.+ T Consensus 358 ekaei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~----~~-~~~~~~~~~~~-------------~~~~~~~~~ 419 (422) T protein:vir:10 358 DKAEILEKNVNSIAALIAAGAMDIDEARDTLRTIAPEVKI----ND-GSVETEVTISE-------------TSNDPLEVP 419 (422) T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccC----CC-CCCccccchhh-------------cCCCCCCCC Confidence 4 45667888999999999999988433221110 00 01111110000 000000000 Q ss_pred CCC Q lcl|Aclame:pro 525 GVD 527 (945) Q Consensus 525 ~~d 527 (945) ..| T Consensus 420 ~~d 422 (422) T protein:vir:10 420 TDD 422 (422) T ss_pred CCC Confidence 000 No 113 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=99.83 E-value=3.2e-18 Score=116.52 Aligned_cols=470 Identities=11% Similarity=-0.005 Sum_probs=240.5 Q ss_pred eeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCc---ccchhhhhhHHhhhccHHHHHHHHHHH Q lcl|Aclame:pro 59 VYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDP---DAFFLINLFRKYRFNNDSKLIKVSEIP 135 (945) Q Consensus 59 ~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p---~~~~~~~v~~~~Am~nsaV~aCV~iIA 135 (945) .=+.|+-.-.+.++..+...+-.+................+ .|.. .| .......++++. ++.+.|.+|++.+. T Consensus 1 ~~~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~--~p~~-~~il~~~~~~~~~y~~m-~~D~~i~s~l~~Rk 76 (491) T protein:vir:79 1 MSKGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMY--LPNP-DPVLKALGKDIRVYREL-RADAHVGGCVRRRK 76 (491) T ss_pred CCCeeeCCCCCcccccccchhHHHHHhhhcccccccccccc--Ccch-hHHHhhccCCHHHHHHH-hhChHHHHHHHHHH Confidence 12233333333333222111111111100000000000000 1100 00 011123455554 47899999999999 Q ss_pred HhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCC---e Q lcl|Aclame:pro 136 KKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQG---N 212 (945) Q Consensus 136 ~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G---~ 212 (945) ..|.+++|.|.+...+. + ....+..+|++++ |+.++..|+ +...+|-...+++....| . T Consensus 77 ~av~~~~w~i~~~~~~~-------~--~a~~i~e~l~~~~--------~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~ 138 (491) T protein:vir:79 77 AAVKALEWGLDRGKAKS-------R--VAKSIADVFADLD--------LSRIATEML-DAVLYGYQPMEITWGKVGNYIV 138 (491) T ss_pred HHHhCCCcEEecCCCCH-------H--HHHHHHHHHhcCC--------HHHHHHHHH-HhhhhcceeEEEEEeecCCeee Confidence 99999999997543221 1 1234566676653 455666664 567899999988765543 3 Q ss_pred EEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 LVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKG 292 (945) Q Consensus 213 pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~ 292 (945) |..+.+.+|.++.+ +.+++..+. ...++.....+++...|+|++...++. ++|.+.+..+......-....++ T Consensus 139 ~~~l~~r~~~~f~~--d~~~~l~l~--~~~~~~~g~~lp~~k~i~~~~~~~~g~---p~g~gLl~~~~w~~~fK~~~~~~ 211 (491) T protein:vir:79 139 PIDVVGKPADWFVY--DPENQLRFR--SKEHWVQGEELPARKFLVPRQEATYLN---PYGFPDLSMCFWPTTFKKGGLKF 211 (491) T ss_pred EEeeeeecccceee--ccCCceEEe--ecCCCCCceeecCCCeEEEEecCCCCC---cccchhHHHHHHHHHHHHhhHHH Confidence 56899999988764 445554433 222222334566777777776655443 57888899999988888889999 Q ss_pred HHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeecc--CCh-hhHHH Q lcl|Aclame:pro 293 NLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFK--GKR-RDMQF 369 (945) Q Consensus 293 ~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs--~sp-~D~Qf 369 (945) -..|..+.|+ |--+..+ +...++++++++.+.+.+..+ +++ ++++.|+++.-+. ... .-..| T Consensus 212 w~~f~E~~G~-P~~igky----------~~~a~~~ek~~l~~al~~~~~--~a~--~viP~~~~ie~~ea~~~~g~~~~y 276 (491) T protein:vir:79 212 WVQFTEKYGS-PMLVGKH----------PRSASDAETNLLLDRLEDMVQ--DAV--AVIPDDSSIEIKEAAGKSGSADVY 276 (491) T ss_pred HHHHHHHcCC-CeEEEec----------CCCCCHHHHHHHHHHHHHHhc--CeE--EEecCCceeEEEeccCCCCChhHH Confidence 9999988886 5445443 345678888888888877643 333 4566666555443 222 22347 Q ss_pred HHHHHHHHHHHHHHhcCChhhcccc----cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----ccceeEE Q lcl|Aclame:pro 370 KELAEFVARKICAVYQVSPQDVGIL----EGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-----NEKDIKL 440 (945) Q Consensus 370 lE~rk~~~eeIA~aFGVPP~lLG~~----e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-----~~~g~~f 440 (945) .+..++..++|+.+. +|.+ .+++++..+.. ..-....+.-.++.+++.+|+++.+.. .....+| T Consensus 277 ~~li~~~d~~Isk~i------LGqtlTt~~~gs~a~~~vh-~~v~~~i~~~D~~~i~~tln~li~~l~~~N~~~~~~p~f 349 (491) T protein:vir:79 277 ERLLHFCRGEVSIAL------LGQNQTTEATSTRASAQAG-LEVTDDIRDGDKAIVVEAMNMLIRWICDLNFDGAARPVF 349 (491) T ss_pred HHHHHHHHHHHHHHH------hhhhhccCcccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceE Confidence 788888889988865 4432 23444444433 334466777788889988886442221 1122344 Q ss_pred EeechhhcCH-HHHHHHHHHHHhCCC-cCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCC Q lcl|Aclame:pro 441 WFKEDDLEKE-RDWWNIIQGQLNTGF-RSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQ 518 (945) Q Consensus 441 ~fd~~~l~D~-kerae~~~~~v~~Gi-mT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~ 518 (945) .| ....+. +.+++.++++++.|+ ++.+++|+.+|+|+.+.++......... .++..+.+.... T Consensus 350 ~~--~e~ee~~~~~a~~~~~L~~~G~~i~~~~~~e~~Gip~~~~~e~~~~~~~~~-------------~~~~~~~~~~~~ 414 (491) T protein:vir:79 350 DM--WEQEQVDEIQAGRDEKLTRAGARFTPAYFKRAYNLQDGDLDERPLPVSAVD-------------AVGAASFAEFEA 414 (491) T ss_pred ee--cCcCchhHHHHHHHHHHHhCCCccCHHHHHHHhCCCCCCCCccccCcCccc-------------ccccccccccCC Confidence 44 344443 568899999999987 7889999999998766554432111000 000000000000 Q ss_pred CCCCCCCCCCCccccchh-HHHHHHHHHHHHhhhhhhhhHHHHHhhccCCccccccchHHHHHHHHhhhhHHHHHhhhhh Q lcl|Aclame:pro 519 PSQQGGGVDENSSVPSEQ-KNAGLEVLRNLFKSLDANASENLKQVIELTNDDNYLKEKELLTRVLKSVGLDSVSEFIENN 597 (945) Q Consensus 519 ~~~~~g~~dd~e~~~se~-k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~ 597 (945) ++ .+..+....+. ..+..... ++-.. .+.+.++....-+.+ ++++.+...+...+.+.+.+..+ T Consensus 415 ----~~-~~~~d~~~~~~~~~~~~~~~-------~~~~~-~i~~~l~~~~s~~e~--~~~L~~l~~~~d~~~l~~~l~~a 479 (491) T protein:vir:79 415 ----PD-QDALDAALNALSARDLNADA-------QALVA-PLLKRIANGASADEL--LGMLAELYPSLDTDALQERLARA 479 (491) T ss_pred ----CC-CcchHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHhcCCHHHH--HHHHHHHhhcCCHHHHHHHHHHH Confidence 00 00000000000 00011111 11111 122222222111111 22222222233333333333222 Q ss_pred hhcccccCCCcc Q lcl|Aclame:pro 598 SQTDVEVSAKDI 609 (945) Q Consensus 598 ~~~~~~~~~~~~ 609 (945) -.+.-..++-+| T Consensus 480 ~~~A~l~Gr~~a 491 (491) T protein:vir:79 480 IFVANLWGRLHA 491 (491) T ss_pred HHHHHHhhhccC Confidence 222333444444 No 114 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=99.82 E-value=4.3e-18 Score=115.79 Aligned_cols=492 Identities=11% Similarity=0.046 Sum_probs=240.7 Q ss_pred eeeeeeecceeeeccccccccccccCC----C-CCcccccCcccceec-cccCCcccchhhhhhHHhhhccHHHHHHHHH Q lcl|Aclame:pro 60 YSIIIFRKNQVLKKEKIIVPYNHQEPP----F-KFNLFEYSPESLMYL-PSISDPDAFFLINLFRKYRFNNDSKLIKVSE 133 (945) Q Consensus 60 ~~~~~~k~n~l~kK~K~i~p~~~r~pp----~-~f~L~~~s~~sl~~l-ps~s~p~~~~~~~v~~~~Am~nsaV~aCV~i 133 (945) -+.|+=.-.|-++.+....+...+... + ..+...-+|..+..+ ..-..++-.....++++...+.+.|.+|++. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~edm~e~D~~i~s~l~~ 80 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 334444444433322211111100000 0 001101111111110 0000111111223444444468899999999 Q ss_pred HHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCC- Q lcl|Aclame:pro 134 IPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQG- 211 (945) Q Consensus 134 IA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G- 211 (945) +...|.+++|.|.+...+.... ......+...|+ .|+ |..++..|+. ...+|-...+++....| T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~-----~~~a~~v~~~l~~~~~--------~~~~i~~~ld-A~~~G~s~~Ei~w~~~~g 146 (526) T protein:vir:79 81 RKRAILGLDWAVEPPRNASAAE-----KADADYLHELLLDLEG--------LEDLLLDALD-GIGHGYSCIELEWALQGR 146 (526) T ss_pred HHHHHhCCCceEecCCCCChHH-----HHHHHHHHHHHhcccC--------HHHHHHHHHh-hhhhcceeEEEEEeecCC Confidence 9999999999997643332111 112233445554 243 4556666654 67799999998765543 Q ss_pred --eEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 212 --NLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFI 289 (945) Q Consensus 212 --~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aa 289 (945) .+..+.+.+|.++.+.. +++....+.. ++.....+++...+.|++...++ .++|.+.+..+......-... T Consensus 147 ~~~~~~l~~r~~~~F~~~~--~~~~~l~~~~--~~~~g~~l~~~k~iv~~~~~~~g---~p~g~gLlr~~~w~~~fK~~~ 219 (526) T protein:vir:79 147 EWMPLAFHHRPQSWFQLNP--EDQNELRLRD--NSPAGEALQPFGWIIHRPRARSG---YVARSGLFRVLAWPYLFRHYA 219 (526) T ss_pred ceeEEEeeeecccceEecc--CCCcEEEecC--CCCCceeecCCceEEEeecCCcC---CccccchHHHHHHHHHHHHhh Confidence 46689999998876543 3333333332 22223445666666666554443 347888889888888888888 Q ss_pred HHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCC-hhhHH Q lcl|Aclame:pro 290 DKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGK-RRDMQ 368 (945) Q Consensus 290 ee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~s-p~D~Q 368 (945) .++-..|..+.|+ |--+..+ +...++++++++.+.+.+..+ ++ .++++.|+++.-+..+ ..... T Consensus 220 ~~~w~~F~E~yG~-P~~igky----------~~~a~~~ek~~L~~av~~i~~--da--~~iiP~~~~ie~~ea~~~~~~~ 284 (526) T protein:vir:79 220 TSDLAEMLEIYGL-PIRLGKY----------PPGTADEEKATLLRAVTGLGH--AA--AGIIPETMAIDFQQAAQGSSEP 284 (526) T ss_pred HHHHHHHHHHcCC-ceEEEec----------CCCCCHHHHHHHHHHHHHHhc--Cc--EEEecCCceeEEeecCCCCHHH Confidence 8888888888885 5445443 334678888888888887743 23 3556666666554432 22345 Q ss_pred HHHHHHHHHHHHHHHhcCChhhc---ccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---c------- Q lcl|Aclame:pro 369 FKELAEFVARKICAVYQVSPQDV---GILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN---E------- 435 (945) Q Consensus 369 flE~rk~~~eeIA~aFGVPP~lL---G~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~---~------- 435 (945) |.+..++..++|+.+. +-..+- +....++++..+. ...-....+.-.+++++..+|+.|.+..- . T Consensus 285 f~~li~~~d~~Isk~i-LGqtlTs~~~~g~~gS~a~g~v-h~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~ 362 (526) T protein:vir:79 285 FLAMMRQSEDAISKAV-LGGTLTSTTSQSGGGAFALGQV-HNEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVR 362 (526) T ss_pred HHHHHHHHHHHHHHHH-hhhhhccccccCcchhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCcc Confidence 7888899999998874 111221 1111233333332 33445667888999999999976543211 0 Q ss_pred ceeEEEeechhhcCHHHHHHHHHHHHhCCC-cCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccc Q lcl|Aclame:pro 436 KDIKLWFKEDDLEKERDWWNIIQGQLNTGF-RSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQA 514 (945) Q Consensus 436 ~g~~f~fd~~~l~D~kerae~~~~~v~~Gi-mT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~ 514 (945) ..-+|.|+.....|.+++++.++++++.|+ ++..++|+.+|+|....++..+.+... +.. ....++..... T Consensus 363 ~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~gip~~~~~e~~l~~~~~--~~~------~~~~~~~~~~~ 434 (526) T protein:vir:79 363 RAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRPAAQ--PAI------LSRQHGQRVAA 434 (526) T ss_pred ccceEEeCCCCcccHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCCchhhccccCC--ccc------ccccccccccc Confidence 123678888888899999999999999988 888999999999765544433322110 000 00000000000 Q ss_pred cCCCCCCCCCCCCCCccccchhHHHHHHHHHHH-HhhhhhhhhHHHHHhhccCCccccccc-hHHHHHHHHhhhhHHHHH Q lcl|Aclame:pro 515 MADQPSQQGGGVDENSSVPSEQKNAGLEVLRNL-FKSLDANASENLKQVIELTNDDNYLKE-KELLTRVLKSVGLDSVSE 592 (945) Q Consensus 515 ~~d~~~~~~g~~dd~e~~~se~k~a~~~~lr~~-~k~l~a~~~~~~~~~~dl~n~~~~l~e-~~~~~~~~~~~~~~~~~~ 592 (945) . ..... . .....++..+.+... .+..+..+.+.++++.++...-..+.| .+++....-+...+.+.+ T Consensus 435 ~----~~~~~---~----~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~s~ee~~~~L~~l~~~ld~~~l~~ 503 (526) T protein:vir:79 435 L----ATIVG---P----RYGDQQALDKALADLPAKDMQNQANDLLAPLLDAVNRGDSETELLGALAEAFPDMDDSALTD 503 (526) T ss_pred c----ccccc---c----cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCHHHHHH Confidence 0 00000 0 001111111111110 011111111111111111111000111 111111111111111111 Q ss_pred hhh----hhhh---cccccCCCc Q lcl|Aclame:pro 593 FIE----NNSQ---TDVEVSAKD 608 (945) Q Consensus 593 ~~~----~~~~---~~~~~~~~~ 608 (945) .+. ++.- .++.-.+-| T Consensus 504 ~l~~a~~~A~l~Gr~~~~~e~~~ 526 (526) T protein:vir:79 504 ALHRLLFAADTWGRLHGNLDRID 526 (526) T ss_pred HHHHHHHHHHHhhhhhhhhcccC Confidence 111 1000 011111111 No 115 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.82 E-value=8.6e-20 Score=125.10 Aligned_cols=385 Identities=10% Similarity=0.059 Sum_probs=201.1 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) +=+|+- ..... ...+......+-+..+ ..+..+ ...+.+++.++++|+.+|+++-+- T Consensus 1 ~~~~~~--------------d~~~~----~~~~~~~~~~~~~~~~----~~~~~l-~a~Y~~~~l~~~~Vd~~aed~~r~ 57 (427) T protein:vir:10 1 MKIVKH--------------DGYND----IFNGGADGSPKPFFMS----DASYHV-GSFYNDNATAKRIVDVIPEEMVTA 57 (427) T ss_pred CCcccc--------------chHHH----HhhcCCCCcccCcccc----CchHHH-HHHHHcCchhhhhhccchHHhhcC Confidence 111110 00000 0111111111101111 112233 345668899999999999999988 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEE-Ee---------cCCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVK-IR---------DEQG 211 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~i-ir---------d~~G 211 (945) .|.|. +.+. . ..+...+++ ...|+.+...+ .+..++|.+++++ ++ +..| T Consensus 58 g~~i~-----g~~~---~-----~~~~~~~~~-------l~~~~~l~~a~-~~~rl~G~a~i~i~v~d~~~l~~p~~~~g 116 (427) T protein:vir:10 58 GFKMS-----GVKD---E-----KEFKSLWDS-------YKLDSSLVDLL-CWARLYGGAAMVAIIKDNRMLTSQAKPGA 116 (427) T ss_pred Ccccc-----CccH---H-----HHHHHHHHH-------hhHHHHHHHHH-HhccccceeEEEEEecCCCccccccCCCc Confidence 88763 1110 0 112222222 23455554444 4445566666654 22 3457 Q ss_pred eEEEEEEcCCceeEEEEcCC------CceEEEEEEee-CCceeeeecccceeeeeeccCCCC---ccCcccccHHH-HHH Q lcl|Aclame:pro 212 NLVAITPVDGTTIKPILSED------TGIVVGYVQEV-DGAIVAHFDKRDVVLFRQNLTPDV---YMYGYSLPPIE-ILY 280 (945) Q Consensus 212 ~pveL~pLdPs~Vtv~~d~d------G~~~~~Yv~~~-dG~~~~~~~a~DVIh~r~n~~~d~---~~~GyGlSPI~-aa~ 280 (945) .+.+|.++++.++++..... -+.+..|.... .+.....+.++.++|+.....++. ....+|.|++. .+. T Consensus 117 ~l~~l~v~d~~~~~~~~~~~dp~s~~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~ 196 (427) T protein:vir:10 117 KLEGVRVYDRFAITVEKRVTNARSPRYGEPEIYKVSPGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLI 196 (427) T ss_pred ceeEEEEechhcccccccccCccccccCcceEEEEecCCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHH Confidence 78899999999887643321 12233343322 222335677777888754433221 22346999986 566 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhc-cHHHHHHHHHHHHHHhcC-cccCcccccCCCceee Q lcl|Aclame:pro 281 KVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQL-SREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWI 358 (945) Q Consensus 281 ~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~L-S~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~ 358 (945) +.+.....+.......+.+.... ++.+++.. ..+ +.+....+++.+...... ++.+..++.+++-++. T Consensus 197 ~~i~~~~~~~~~~~~l~~k~~~~---v~k~~~l~-------~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e 266 (427) T protein:vir:10 197 DAICDYDYCESLATQILRRKQQA---VWKVKGLA-------EMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYD 266 (427) T ss_pred HHHHHHHHHHHHHHHHHHHhccc---cccchhHH-------HHhcCccchHHHHHHHHHHHHhcCcccceeeecCCCcee Confidence 87888888888888877765433 34333110 111 111122233333333222 3344445556667788 Q ss_pred eccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 359 DFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKAK-------GLEPLMATISKGFDEVVS 430 (945) Q Consensus 359 pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~~-------tL~Pll~~IEqeLn~kL~ 430 (945) .++.+..+. .+......++||++.|||..+| |....+-.++.+.....|+.. .+.|.+..+- .++. T Consensus 267 ~~~~~lsgl--~~~~~~~~~~iaaa~~IP~t~L~G~sp~Glnstgd~D~~nyyd~i~~~Qe~~l~p~l~~l~----~~i~ 340 (427) T protein:vir:10 267 VLNSDISGV--PEFLSSKMDRIVSLSGIHEIIIKNKNVGGVSASQNTALETFYKLVDRKREEDYRPLLEFLL----PFIV 340 (427) T ss_pred EEecccCCh--HHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhh Confidence 777666654 3677888899999999999977 443434345556666667653 3444433332 2222 Q ss_pred cccccceeEEEeechhhcCHHHH-------HHHHHHHHhCCCcCHHHHHHHHh----CCCCCCccccccccccccccccc Q lcl|Aclame:pro 431 EFRNEKDIKLWFKEDDLEKERDW-------WNIIQGQLNTGFRSINEARMEKG----LEPVPWGDVPFSGLRNWKPEDEQ 499 (945) Q Consensus 431 ~~~~~~g~~f~fd~~~l~D~ker-------ae~~~~~v~~GimT~NEaRe~lG----lpPveGGD~~l~~~n~~~ped~~ 499 (945) . ..++.++|+.+..++.+++ ++++++++++|+++++|+|+.+- ..++.+++. ...++ T Consensus 341 ~---s~~~~~~f~pL~~~s~kEkaei~~~~a~a~~~~~~~gvi~~~e~r~~L~~~~~~~~~~~~~~-------~~~e~-- 408 (427) T protein:vir:10 341 D---EEEWSIEFEPLSVPSKKEESEITKNNVESVTKAITEQIIDLEEARDTLRSIAPEFKLKDGNN-------INIRE-- 408 (427) T ss_pred c---CCCcEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhhccccCCCCcc-------ccccc-- Confidence 2 2468899998877765544 56778889999999999999872 222222211 11110 Q ss_pred hhhccCCCCcccccccCCCCCCCCCCCCCC Q lcl|Aclame:pro 500 AKAQQGAMPPQLAQAMADQPSQQGGGVDEN 529 (945) Q Consensus 500 a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~ 529 (945) .++...++++...+..+++ T Consensus 409 -----------~~~~~e~~p~~~e~~~d~~ 427 (427) T protein:vir:10 409 -----------PEETTEPEPGLGEKLEDEN 427 (427) T ss_pred -----------cchhcCCCCCCCCCCCCCC Confidence 0011111112222222233 No 116 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.80 E-value=4.5e-19 Score=121.17 Aligned_cols=398 Identities=10% Similarity=0.046 Sum_probs=204.9 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .-.|=.-+ |+.+........ .+....++ +.+.+. +........+...+.+++.++.+|+.+|+++-+- T Consensus 1 ~~~~m~~~-----~~~~~~~D~~~~-~~~~~~g~-----~~~~~~-~~~~~~~~~l~~~Y~~~~l~~~~Vd~~aed~~r~ 68 (435) T protein:vir:79 1 MGVFMSDK-----VKAITKEDGYNE-IFGSKDGT-----FRPNAF-YMQRAAFKALSQFYEEDGMARRIVDVIPEEMVTP 68 (435) T ss_pred CCcccccc-----cccchhhcchhh-hhcccccc-----cccCcc-cCCcCCHHHHHHHHhcCchhhhhhccchHHhhcC Confidence 12221111 222222111111 01111111 111111 2222334556666778999999999999999988 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEe-c---------CCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIR-D---------EQG 211 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iir-d---------~~G 211 (945) +|++- .+.. . ..+...+.+ ...|+.+...+. +..++|.+++++.. + ..| T Consensus 69 g~~i~---g~~~-----~-----~~~~~~~~~-------l~~~~~l~~a~~-~~rl~G~~~i~i~~~d~~~~~~Pl~~~g 127 (435) T protein:vir:79 69 GFKVD---GVKN-----E-----KSFKSRWDE-------LRLNAKIIDALS-WSRLFGGSAILAVVADNKMLKSPVKPGA 127 (435) T ss_pred Cceec---CCCh-----H-----HHHHHHHHH-------hhHHHHHHHHHH-hhhccccEEEEEEecCCCCcccccccCC Confidence 88762 1110 0 012222221 233455544444 44556666655543 3 235 Q ss_pred eEEEEEEcCCceeEEEEcCC------CceEEEEEEeeC-CceeeeecccceeeeeeccCCCC---ccCcccccHH-HHHH Q lcl|Aclame:pro 212 NLVAITPVDGTTIKPILSED------TGIVVGYVQEVD-GAIVAHFDKRDVVLFRQNLTPDV---YMYGYSLPPI-EILY 280 (945) Q Consensus 212 ~pveL~pLdPs~Vtv~~d~d------G~~~~~Yv~~~d-G~~~~~~~a~DVIh~r~n~~~d~---~~~GyGlSPI-~aa~ 280 (945) .+.++.+++|.+|++..... -+.+..|..... +.....+.++.++|+...+.|+. ...++|.||+ +.+. T Consensus 128 ~i~~i~v~d~~~i~~~~~~~dp~sp~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~ 207 (435) T protein:vir:79 128 QLEDIRVYDRYQITIHERETNARSVRYGEPKLYKISPGGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLI 207 (435) T ss_pred ceeeEEeechhhccchhhccCCcccccCcceEEEEecCCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHH Confidence 56689999998887643211 122333443322 22355677788888764433322 1234699998 5788 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhc-cHHHHHHHHHHHHHHhcC-cccCcccccCCCceee Q lcl|Aclame:pro 281 KVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQL-SREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWI 358 (945) Q Consensus 281 ~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~L-S~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~ 358 (945) +.+.....+.......+.++... ++.++... ..+ +......++..+...... ++.+..++.+++-++. T Consensus 208 ~~l~~~~~~~~~~~~l~~~~~~~---v~~~~~l~-------~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e~~e 277 (435) T protein:vir:79 208 EAIVDYNYCQELATQLLRRKQQA---VWKARDLA-------LMCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDEEYE 277 (435) T ss_pred HHHHHHHHHHHHHHHHHHHhcCc---cccchhHH-------HhhcCccchHHHHHHHHHHHHhcCCCCceeEecCCcceE Confidence 98999888888888887766443 33332111 111 111222233333322222 2334445555556788 Q ss_pred eccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcccc Q lcl|Aclame:pro 359 DFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKAKGLEPLM----ATISKGFDEVVSEFR 433 (945) Q Consensus 359 pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~~tL~Pll----~~IEqeLn~kL~~~~ 433 (945) .++.+..+. .+......++||++.|||..+| |....+-.|+.+.....|+.. |+-+. +.+-+.+-.++.. T Consensus 278 ~~~~~lsgl--~~~~~~~~~~iaaa~~IP~t~L~G~s~~glnstgd~d~~~yyd~-i~~~Qe~~l~p~l~~l~~li~~-- 352 (435) T protein:vir:79 278 VLNSDVSGV--PEFLQEKIDRIVALTGIHEIIIKNKNTGGVSASQNTALETFYKL-IDRKRVEDYKPILEFLLPFMIS-- 352 (435) T ss_pred EEecccCCH--HHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc-- Confidence 777666654 4778888999999999999776 444444445566666667663 22222 2222222222222 Q ss_pred ccceeEEEeechhhcCHHHH-------HHHHHHHHhCCCcCHHHHHHHH-hCCCCCCccccccccccccccccchhhccC Q lcl|Aclame:pro 434 NEKDIKLWFKEDDLEKERDW-------WNIIQGQLNTGFRSINEARMEK-GLEPVPWGDVPFSGLRNWKPEDEQAKAQQG 505 (945) Q Consensus 434 ~~~g~~f~fd~~~l~D~ker-------ae~~~~~v~~GimT~NEaRe~l-GlpPveGGD~~l~~~n~~~ped~~a~~~~~ 505 (945) ..++.++|+.....+.+++ ++++++++++|+++++|+|+.+ ...|..|-.. .... T Consensus 353 -s~d~~~~f~pL~~~sekEkAei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~----------~~~~------ 415 (435) T protein:vir:79 353 -ETEWSIEFEPLSVPSDKDKAEIMAKNVESVVKLKAEQAINLKETRDTLRSICPDLKIMD----------NDNI------ 415 (435) T ss_pred -CCCCeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccccCCCC----------cccc------ Confidence 2468899998887776544 5567778999999999999987 3222211100 0000 Q ss_pred CCCccccccc-CCCCCCCCCCCCC Q lcl|Aclame:pro 506 AMPPQLAQAM-ADQPSQQGGGVDE 528 (945) Q Consensus 506 a~~~~~~~~~-~d~~~~~~g~~dd 528 (945) ..+++. .+++..+.++.++ T Consensus 416 ----~~~~~~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 416 ----ELPEPEDLDPEPGQEGGLNK 435 (435) T ss_pred ----cCCccccCCCCCCCCCCCCC Confidence 000000 1111111112211 No 117 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.79 E-value=6.6e-19 Score=120.24 Aligned_cols=406 Identities=9% Similarity=0.019 Sum_probs=208.6 Q ss_pred eeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 64 IFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKEL 143 (945) Q Consensus 64 ~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~ 143 (945) .-+.|+ .+-+++...+.....+-..+..+...+.... .+...........+...+.+++.++.+|+.+|+++-+-++ T Consensus 1 ~~~~~~--a~~~~~~~~a~~~~~~~~~~g~~~~~d~~~~-~~~~~~~~~~~~~l~~lY~~~~l~r~iVd~~a~d~~r~g~ 77 (461) T protein:vir:80 1 MYSIDK--AKQAKIDSKIVNRNDFMVGHGKANSRDKLTR-QTPGNGQKLDLKACENLYASNSIAMNIVDIISEDMVRAGW 77 (461) T ss_pred Cccchh--hhhhhhhhhhhhhhHHHhhcCCcchhhhhhc-cccCcccccCHHHHHHHHHhCCccchhhccchHHhhcCCe Confidence 233333 1111111111100010001111111111000 1111112233455666777889999999999999988888 Q ss_pred EEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEe-cCC------------ Q lcl|Aclame:pro 144 EIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIR-DEQ------------ 210 (945) Q Consensus 144 ~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iir-d~~------------ 210 (945) ++. ..+.+ ....+...+.+ ...|+.+...+ .+..++|.+++++.. +.. T Consensus 78 ~i~--~~~~~---------~~~~~~~~~~~-------l~~~~~l~~~~-~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~ 138 (461) T protein:vir:80 78 SLK--TDNKE---------MKKNIESKWRK-------LKTKDRFQKLY-ADKRLYGDGFLSIGVVSSNREQADLSTAIDP 138 (461) T ss_pred eee--cCCHH---------HHHHHHHHHHH-------hhHHHHHHHHH-HhhcccccEEEEEEeecCCccccCccCCccc Confidence 763 11110 00112222222 23455554444 455677776666533 221 Q ss_pred C---eEEEEEEcCCceeEEE---EcC---CCceEEEEEEe------------eCCceeeeecccceeeeeeccCCCCccC Q lcl|Aclame:pro 211 G---NLVAITPVDGTTIKPI---LSE---DTGIVVGYVQE------------VDGAIVAHFDKRDVVLFRQNLTPDVYMY 269 (945) Q Consensus 211 G---~pveL~pLdPs~Vtv~---~d~---dG~~~~~Yv~~------------~dG~~~~~~~a~DVIh~r~n~~~d~~~~ 269 (945) + .+..|.|+.+..+.+. .+. +-+.+..|... ..+.....+.++.++|+.....++. T Consensus 139 ~~~~~~~~l~~~~~~~i~~~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~--- 215 (461) T protein:vir:80 139 KTIKSIPYINTFNTQKVTQLYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGE--- 215 (461) T ss_pred ccccceeEEEeccccccchhhhcccCcCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCcc--- Confidence 1 2223334333333221 111 11223233322 1233456678888899866555543 Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccc Q lcl|Aclame:pro 270 GYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPI 349 (945) Q Consensus 270 GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~ 349 (945) .+|.|.++.+...+.....+.........+... .++.++. ...+..+....+.+.++...+ ..+.+ T Consensus 216 ~~G~S~le~~~~~l~~~~~~~~~~~~l~~~~~~---~v~k~~~--------l~~~~~~~~~~~~~~~~~~~~---~~g~~ 281 (461) T protein:vir:80 216 TKGRSIFESLYDIITVMDTSLWSVGQILYDFAF---KVYKTDD--------IDALNKDDKANLTAMLDFMFR---TEALA 281 (461) T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCC---Cceecch--------HHhhhchHHHHHHHHHHHhcC---CceEE Confidence 469999999999999988888888877765433 2444432 123344455555666665443 23356 Q ss_pred ccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHH-------HHHHHHHHHH Q lcl|Aclame:pro 350 LSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAK-------GLEPLMATIS 422 (945) Q Consensus 350 VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~-------tL~Pll~~IE 422 (945) +++.+-++..++.+..+.. +..+.....||++-+||..++.....+..++.+.....|+.. -+.|+++.+- T Consensus 282 ~~d~~e~~e~~~~~lsgl~--~~l~~~~~~iaa~s~iP~t~L~G~s~g~~asge~D~~~yyd~i~~~qe~~l~p~le~l~ 359 (461) T protein:vir:80 282 IIKGDEQLTKESTNVSGMK--DLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQYDVMNYYARVSSIQENRLRPQLEYLT 359 (461) T ss_pred EEcCCcceEEEecCcCCHH--HHHHHHHHHHhhhhcCCeeeeecccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 7788888888877666544 788889999999999999876444445566667666666543 3555555555 Q ss_pred HHHHHhhccc-----cccceeEEEeechhhcCHHHHH-------HHHHHHHhCCCcCHHHHHHHH-hCCCCC-Ccccccc Q lcl|Aclame:pro 423 KGFDEVVSEF-----RNEKDIKLWFKEDDLEKERDWW-------NIIQGQLNTGFRSINEARMEK-GLEPVP-WGDVPFS 488 (945) Q Consensus 423 qeLn~kL~~~-----~~~~g~~f~fd~~~l~D~kera-------e~~~~~v~~GimT~NEaRe~l-GlpPve-GGD~~l~ 488 (945) +.+-+..... .....+.+.|+....++.++++ +++++++++|++|++|+|+.+ +.-.++ .+.. T Consensus 360 ~~i~~s~~~~~~~~~p~~~~~~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l~~~~~~~~~~~~--- 436 (461) T protein:vir:80 360 RLLMWASDDCGPSIDPDSFEWAIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENSSKF--- 436 (461) T ss_pred HHHHHHhcccccccCccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCccC--- Confidence 5443322110 1123578889888877766654 558888999999999999866 221111 1100 Q ss_pred ccccccccccchhhccCCCCcccccccCCCCCCCCCC Q lcl|Aclame:pro 489 GLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGG 525 (945) Q Consensus 489 ~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~ 525 (945) ....++... ..... ......+.+++ T Consensus 437 --~~~~~~~~~-~~~~~---------~~~~~~e~~~g 461 (461) T protein:vir:80 437 --SGDSAEIDK-LAKLV---------YDAYAKKNADG 461 (461) T ss_pred --CCCCchhhh-hhhhc---------cccccccCCCC Confidence 000011000 00000 00000011111 No 118 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=99.79 E-value=7e-17 Score=109.15 Aligned_cols=466 Identities=12% Similarity=0.031 Sum_probs=238.4 Q ss_pred hhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeecccc----ccccccccCCCCCcccccCcccceeccccCCcc Q lcl|Aclame:pro 34 LSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKI----IVPYNHQEPPFKFNLFEYSPESLMYLPSISDPD 109 (945) Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~----i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~ 109 (945) .++| |+=.-.+-++.+.. ....+.+....+++. +..++..++ T Consensus 1 m~~~-------------------------i~~~~g~p~~~~~~~~~~~~~ia~~~~~~~~~~---------~~~~~~~~~ 46 (491) T protein:vir:10 1 MSKG-------------------------LWVSPTEFVTFGEPDKSLSSQIATRARSIDFFA---------LGMYLPNPD 46 (491) T ss_pred CCCc-------------------------eeCCCCCccCcccCChHHHHHHHhhhccccccc---------ccCCccchH Confidence 1111 11111110110000 000000000000000 000111111 Q ss_pred c-----chhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHH Q lcl|Aclame:pro 110 A-----FFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSW 184 (945) Q Consensus 110 ~-----~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFw 184 (945) . .....++++. ++.+.|.+|++.+...|.+++|.|.+...+. .....+...|++++ | T Consensus 47 ~iLr~~~~~~~~y~~m-~~D~~i~s~l~~Rk~av~~~~w~i~~~~~~~---------~~~e~v~e~l~~~~--------~ 108 (491) T protein:vir:10 47 PVLKALGKDIRVYREL-RADAHVGGCVRRRKAAVKALEWGLDRGKAKS---------RVAKSIADVFADLD--------L 108 (491) T ss_pred HHHHhcCCCHHHHHHH-hhChHHHHHHHHHHHHHhCCCcEEecCCCCH---------HHHHHHHHHHhcCC--------H Confidence 0 0113455554 4789999999999999999999996533221 11234566676653 4 Q ss_pred HHHHHHHHHHHhccCCeEEEEEecCCC---eEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeec Q lcl|Aclame:pro 185 EYLLGMVLDDILTIDRGAIVKIRDEQG---NLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQN 261 (945) Q Consensus 185 etli~~Lv~dlLl~Gna~i~iird~~G---~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n 261 (945) ..++..|+ +...+|.+..+++....| .|..+.+++|.++.+ +.+++..+. ...++.....+++...|+|++. T Consensus 109 ~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~--d~~~~l~~~--~~~~~~~g~~l~~~k~i~~~~~ 183 (491) T protein:vir:10 109 SRIVTEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFVY--DPENQLRFR--SKDHWMQGEELPARKFLVPRQE 183 (491) T ss_pred HHHHHHHH-HhhhhcceeEEEEEeecCCeeEEEEeeeecccceee--ccCCceEEe--cCCCCCCcceecCCCEEEEEec Confidence 55666665 567899999988776543 356899999988764 445554432 2222233345667777777765 Q ss_pred cCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 262 LTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMM 341 (945) Q Consensus 262 ~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~s 341 (945) ..++. ++|.+.+..+......-....++-..|..+.|+ |--+..+ +...++++++++.+.+.+..+ T Consensus 184 ~~~~~---p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~-P~~igky----------~~~a~~~ek~~l~~al~~~~~ 249 (491) T protein:vir:10 184 ATYLN---PYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGS-PMLVGKH----------PRSASDGEKNLLLDCLEDMVQ 249 (491) T ss_pred CCCCC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHcCC-CeEEEec----------CCCCCHHHHHHHHHHHHHHhc Confidence 55443 578888999999888888888888899888886 4444443 345688889888888887643 Q ss_pred CcccCcccccCCCceeeecc--CChhh-HHHHHHHHHHHHHHHHHhcCChhhcccc----cCCCcccHHHHHHHHHHHHH Q lcl|Aclame:pro 342 GDYTQVPILSGGKFTWIDFK--GKRRD-MQFKELAEFVARKICAVYQVSPQDVGIL----EGSNKATAEVMASLTKAKGL 414 (945) Q Consensus 342 G~Nagkp~VL~~G~k~~pLs--~sp~D-~QflE~rk~~~eeIA~aFGVPP~lLG~~----e~gT~SN~Eqq~~~F~~~tL 414 (945) +++ ++++.|+++.-+. .+... ..|.+..++..++|+.+. +|.+ .+++++..+. ........+ T Consensus 250 --~a~--~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i------LGqtlTt~~~gs~a~~~v-h~~v~~di~ 318 (491) T protein:vir:10 250 --DAV--AVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIAL------LGQNQTTEATSTRASAQA-GLEVTDDIR 318 (491) T ss_pred --CcE--EEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHH------hhhhcccCcccchhHHHH-HHHHHHHHH Confidence 333 4566666665543 22222 247788888888888763 3432 2334444333 333456677 Q ss_pred HHHHHHHHHHHHHhhcccc-----ccceeEEEeechhhcCHHHHHHHHHHHHhCCC-cCHHHHHHHHhCCCCCCcccccc Q lcl|Aclame:pro 415 EPLMATISKGFDEVVSEFR-----NEKDIKLWFKEDDLEKERDWWNIIQGQLNTGF-RSINEARMEKGLEPVPWGDVPFS 488 (945) Q Consensus 415 ~Pll~~IEqeLn~kL~~~~-----~~~g~~f~fd~~~l~D~kerae~~~~~v~~Gi-mT~NEaRe~lGlpPveGGD~~l~ 488 (945) .-.++.++..+|+++.+.. .....+|.|+... .+.+.+++.++++.+.|+ ++..++|+.+|+|+-+.++.+.. T Consensus 319 ~~D~~~i~~tln~li~~l~~~N~~~~~~p~f~~~~~~-e~~~~~a~~~~~L~~~G~~i~~~~i~e~~Gip~~~~~~~~~~ 397 (491) T protein:vir:10 319 DGDKAVVSEAMNMLIRWICDLNFDGADRPVFDMWEQE-QVDEIQAGRDQKLTQAGARFTPAYFKRAYNLQDGDLDERPLP 397 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEecCcC-chhHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCcCccccc Confidence 7788888888886442211 1223456665432 234678999999999987 78899999999987655443221 Q ss_pred ccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHhhhhhhhhHHHHHhhccCCc Q lcl|Aclame:pro 489 GLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAGLEVLRNLFKSLDANASENLKQVIELTND 568 (945) Q Consensus 489 ~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~ 568 (945) .... ...+....+.... .+....+...++. ..+.+....++- .+.+.+.++.... T Consensus 398 ~~~~-------------~~~~~~~~~~~~~---------~~~~~~d~~~~~~--~~~~~~~~~~~~-~~~i~~~l~~~~s 452 (491) T protein:vir:10 398 VSAV-------------DTVGAASFAEFEA---------PDQDALDAALNTL--SARDLNADAQAL-VAPLLKRIANGAS 452 (491) T ss_pred cCCC-------------CCcccccccccCC---------CCCCchHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHhcCC Confidence 1000 0000000000000 0000001100000 001111111111 1112222222111 Q ss_pred cccccchHHHHHHHHhhhhHHHHHhhhhhhhcccccCCCcc Q lcl|Aclame:pro 569 DNYLKEKELLTRVLKSVGLDSVSEFIENNSQTDVEVSAKDI 609 (945) Q Consensus 569 ~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (945) -+ ..++++.+...+...+.+.+.+..+-.+.-..++-+| T Consensus 453 ~~--e~~~~L~~l~~~~d~~~l~~~l~~a~~~A~l~G~~~a 491 (491) T protein:vir:10 453 AD--ELLGMLAELYPSLDADALQERLARAIFVANLWGRLHA 491 (491) T ss_pred HH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhccC Confidence 11 1122333333333334444433322223334455555 No 119 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.79 E-value=4.6e-19 Score=121.11 Aligned_cols=619 Identities=13% Similarity=0.097 Sum_probs=246.0 Q ss_pred hhhh----hcccCCC--------------Ccchh---h-hhhhhhccceeeeeeeeeecceeeeccccccccccccCCCC Q lcl|Aclame:pro 31 VDSL----SRGKDYP--------------GFKPL---L-TYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFK 88 (945) Q Consensus 31 ~~~~----~~~~~~~--------------~~~~~---~-~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~ 88 (945) .-.| .|.||-. ---|+ - +-+..+|.-.-.+.=++ ++=+.|+.|...+.... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~ds------ 73 (765) T protein:vir:96 1 MFKLSWIFGRKKDNAACSESAPEKVARIPQHDPLDPMIKLGKIRGWNVEPEKAPVI-RSVKDFLEPGLSVAMDS------ 73 (765) T ss_pred CceeeeecccccccccccccCchhhhhcCCCCCcccchhHHHHhhcccccccCCCC-CCCCcccCcccceeccc------ Confidence 1011 1111110 00000 0 00111222111111000 00000000000000000 Q ss_pred CcccccCcccceec-------------cccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccc Q lcl|Aclame:pro 89 FNLFEYSPESLMYL-------------PSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVN 155 (945) Q Consensus 89 f~L~~~s~~sl~~l-------------ps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee 155 (945) .. .++....+... ..|..+..+.+..++ ..+.++..++.+|+++|+++-+-++.|. .++.+. T Consensus 74 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gyql~-alY~~~~l~rkiVd~pAeDa~R~g~~I~---~~~~e~ 148 (765) T protein:vir:96 74 AY-GDGPTPAAKAAAGGQNPYVVPTMLQDWYNSQGFIGYQAC-AIISQHWLVDKACSMSGEDAARNGWELK---SDGRKL 148 (765) T ss_pred cc-cccccchHHHhhhccCccchhhHHHhhhcccCCccHHHH-HHHHhCchhhhhhhcchHHhhcCCceee---cCcccc Confidence 00 00000000000 001111122222333 4466889999999999999998888773 111111 Q ss_pred cccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCC---------------CeEEEEEEcC Q lcl|Aclame:pro 156 YYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQ---------------GNLVAITPVD 220 (945) Q Consensus 156 ~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~---------------G~pveL~pLd 220 (945) . .. ....+.+.+. ....|+.+...+.+..+.+|++.++.+...+ |.+.+|..++ T Consensus 149 ~-~~---~~~~l~~~~~-------rl~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~l~~PL~~~~I~kg~~kgl~vld 217 (765) T protein:vir:96 149 S-DE---QSALIARRDM-------EFRVKDNLVELNRFKNVFGVRIALFVVESDDPDYYEKPFNPDGIAPGSYKGISQID 217 (765) T ss_pred C-HH---HHHHHHHHHH-------HhhHHHHHHHHHHHhhhceeeEEEEEecccCcchhhccccccccccceeeEEEEec Confidence 0 00 0111222222 2345666666555555544444444433222 3456788888 Q ss_pred CceeEEEE----cCC--C---ceEEEEEEeeCCceeeeecccceeeeeeccCCCCc---cCcccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 221 GTTIKPIL----SED--T---GIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVY---MYGYSLPPIEILYKVILSDIF 288 (945) Q Consensus 221 Ps~Vtv~~----d~d--G---~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~---~~GyGlSPI~aa~~~I~~~~a 288 (945) |.++.+.. ..+ . +.+..|. ..|+ .+.++.+||+.....++.. ...+|.|-++.+...|..... T Consensus 218 p~~~~~~~v~e~~~Dp~sp~fg~P~~y~--i~g~---~IH~SRli~~~g~~lpd~lk~~~~~~G~Svlq~~yd~I~~~~~ 292 (765) T protein:vir:96 218 PYWAMPQLTAESTADPSAEHFYEPDFWI--ISGK---KYHRSHLVVVRGPQPPDILKPTYIFGGIPLTQRIYERVYAAER 292 (765) T ss_pred hhhcccccchhccccccccccCcceeee--ecCc---eeccceEEEecCCCchhhhccccCccCccHHHHHHHHHHHHHH Confidence 87766532 111 1 1111222 2232 3556667777544433321 223599999999999999999 Q ss_pred HHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHH Q lcl|Aclame:pro 289 IDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQ 368 (945) Q Consensus 289 aee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~Q 368 (945) +......++.++... ++.++.. ..+..+ +.+++.++......+..+.++++.+-+|..++.+..+.. T Consensus 293 t~~~~a~Ll~k~~~~---v~k~~~~--------~~l~~~--~~l~~r~~~~~~~r~n~g~~~id~ee~~e~~s~~lsgl~ 359 (765) T protein:vir:96 293 TANEAPLLAMSKRTS---TIHVDVE--------KAIANE--DAFNARLAFWIANRDNHGVKVIGIDETMEQFDTNLSDFD 359 (765) T ss_pred HHHHHHHHHHHhccc---eeeechH--------hhhccH--HHHHHHHHHHHHhcCCceeEEecCCcceeEEecccCCHH Confidence 998888888876543 4444211 111211 234444444444433344577888888988887766544 Q ss_pred HHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhccccccceeEE Q lcl|Aclame:pro 369 FKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKA-------KGLEPLMATISKGFDEVVSEFRNEKDIKL 440 (945) Q Consensus 369 flE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~-------~tL~Pll~~IEqeLn~kL~~~~~~~g~~f 440 (945) +......++||++.+||...| |....|..++.+.....||. ..+.|.++.+-+.+-+. .....++.+ T Consensus 360 --d~l~~~~~~iAaas~IP~t~LfGqsp~GlnATGe~D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s---~~i~~d~~i 434 (765) T protein:vir:96 360 --SVIMNQYQLVAAIAKTPATKLLGTSPKGFNATGEHETISYHEELESIQEHIFDPLLERHYLLLAKS---ESIDVQLEI 434 (765) T ss_pred --HHHHHHHHHHHhhhCCCeeeeccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCcceE Confidence 777888899999999998666 43435555666777777766 34455544444333221 112246889 Q ss_pred EeechhhcCHHHHH-------HHHHHHHhCCCcCHHHHHHHHhCCCCCCcccc-----ccccccccccccchhhcc---C Q lcl|Aclame:pro 441 WFKEDDLEKERDWW-------NIIQGQLNTGFRSINEARMEKGLEPVPWGDVP-----FSGLRNWKPEDEQAKAQQ---G 505 (945) Q Consensus 441 ~fd~~~l~D~kera-------e~~~~~v~~GimT~NEaRe~lGlpPveGGD~~-----l~~~n~~~ped~~a~~~~---~ 505 (945) +|+.+..++.++++ +++++++++|++++||+|+.++.+|.-|.+.+ .... ...+++....... . T Consensus 435 ~FnpL~~~sekEkAei~~k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~-~~~pe~~~~~~~~~~~~ 513 (765) T protein:vir:96 435 VWNPVDSTTSQQQAELNNKKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEP-GMSPENLAELEKAGAQS 513 (765) T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCcccccccc-CCCccccccccCCCccc Confidence 99988888766655 45788899999999999999876654322111 0000 0111111000000 0 Q ss_pred CCCcccccccCCCCCCCCCCC------C-------------CCccccchhHHHHHHHHHHHHhhhhhhhhHHHHHhhccC Q lcl|Aclame:pro 506 AMPPQLAQAMADQPSQQGGGV------D-------------ENSSVPSEQKNAGLEVLRNLFKSLDANASENLKQVIELT 566 (945) Q Consensus 506 a~~~~~~~~~~d~~~~~~g~~------d-------------d~e~~~se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~ 566 (945) +.........+.+++...+.. . .+++.+...+.... ...+.+.+...+.+.+.-... T Consensus 514 ~~~~~e~~~~~a~p~~~eg~~~~~~~~p~~~~p~~~~~~~~~g~~~~~p~~~~p~----~~~~~~~~~~~~~~~~~~~~a 589 (765) T protein:vir:96 514 AKAKGEAERAEAQAGAVEGAGDPVPAAPRGTKPLAKAAEEGAGEAATPPSRPNPR----AELRNLLSDLLSKLEALDDAQ 589 (765) T ss_pred ccccCccccccCCCCccCCCCcccccCCcccCCccccccccCccccCcccccccc----ccchhcccchhhhhhcccccc Confidence 000000000000000000000 0 00000000000000 001111111111111111110 Q ss_pred CccccccchHHHHHHHHhhhhHHHHHhhhhhhhcccccCCCcc-----cccchh--hH------HHHHHhhccchhhhhh Q lcl|Aclame:pro 567 NDDNYLKEKELLTRVLKSVGLDSVSEFIENNSQTDVEVSAKDI-----LSFKYN--SL------VEDETIYATEKDIVLR 633 (945) Q Consensus 567 n~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~------~~~~~~~~~~~~~~~~ 633 (945) ..+ +.. ..+. .+.+.-.+ ++ ++-+.++-++..+ +.=||- +. +.-|.-=.||. | T Consensus 590 ~~~-g~~----v~~~--~~~a~~~a--~~-ps~a~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~ie~p~g~~r----~ 655 (765) T protein:vir:96 590 APD-GVD----IEQD--DAPGLKRT--SK-PSVSGMEPSVFSSNRIVGPRDHSELQRIKVNGITTLIENPRGSIR----Q 655 (765) T ss_pred ccC-CCC----CCCC--ccchhhhh--hc-cccCCCCCcccCCCCCCCCcccccccceeecceEeeeeCccceee----e Confidence 000 000 0000 00000000 00 0001122222111 111221 00 00011111111 0 Q ss_pred -hhcccccchhhhhhhh-------hhccccccccceeeecCccceeEEec---------cccccchhhHHHHHHHHH--- Q lcl|Aclame:pro 634 -LLGKNSLDHRETFGLI-------ATHFDCHTVPKVEFYSDKDKRYVFAN---------LSVCSPINSVEKFTRLDE--- 693 (945) Q Consensus 634 -~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--- 693 (945) -=++-+.+.+-++|.| -.|.||-.-|.-+ ..+-||.-- --|.-- |...++ T Consensus 656 g~~~~w~~~~~~~yg~~~~~~g~d~~~~d~~~~~~~~----~~~~~~~~q~~~~~~fde~k~~~~------~~~~~~a~~ 725 (765) T protein:vir:96 656 GKDGSWRVQMKHHYGFIKGTKGADGDEVDCFVGPNLG----SKRVFVVNQVNKDGQFDEHKCMLG------FNNINDAKS 725 (765) T ss_pred cCCCccCcccccccceeeecccccCcccceeecCCCC----CceeEEEeeecCCCCcccceeeec------CCCHHHHHH Confidence 0012223333334443 5688888777654 123333211 011111 122222 Q ss_pred -HhhcccCCCcee--------eeeeehhhccCcccchhhhhhhhhhhhhhcCCcch Q lcl|Aclame:pro 694 -LLSCTTKKPTKL--------EIVFDWLEFKNFKDIDLLKYSQLGDSIKKKNYDSF 740 (945) Q Consensus 694 -~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (945) .|+|-+.--+-| +-.-.|+.+.+- .|-|..- T Consensus 726 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 765 (765) T protein:vir:96 726 GYLSCFRPGWDGLGSIHEVDLPAFRRWLANGDT----------------TKPFGGK 765 (765) T ss_pred HHHhccccccccCCCccccCHHHHHHHHhCCCc----------------cCCCCCC Confidence 255554432111 112223332221 1111000 No 120 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=99.78 E-value=5.3e-17 Score=109.83 Aligned_cols=484 Identities=7% Similarity=-0.048 Sum_probs=236.7 Q ss_pred eeeeeeecceeeeccccccccccccCCCCCccccc-----Ccccceec-cccCCcccchhhhhhHHhhhccHHHHHHHHH Q lcl|Aclame:pro 60 YSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEY-----SPESLMYL-PSISDPDAFFLINLFRKYRFNNDSKLIKVSE 133 (945) Q Consensus 60 ~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~-----s~~sl~~l-ps~s~p~~~~~~~v~~~~Am~nsaV~aCV~i 133 (945) -|-|+=.-.|-++.++...+...+.....-...++ +|..+..+ ..-..++-.....++.+.-++.+.|.+|++. T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L~~dm~~~D~hi~s~l~~ 80 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADLAFDMEEKDTHLFSELSK 80 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 22222222222222221111110000000000000 11111000 0000011111123344444578899999999 Q ss_pred HHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec---C Q lcl|Aclame:pro 134 IPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD---E 209 (945) Q Consensus 134 IA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird---~ 209 (945) +...|.+++|.|.+..+... ........+...|+ .|+ |..++..|+ +...+|-...+++.. . T Consensus 81 Rk~av~~~~w~I~p~~~~~~-----~~~~~a~~v~~~l~~~~~--------f~~~~~~ll-dA~~~G~s~~Ei~w~~~~g 146 (512) T protein:vir:19 81 RRLAIQALEWRIAPARDASA-----QEKKDADMLNEYLHDAAW--------FEDALFDAG-DAILKGYSMQEIEWGWLGK 146 (512) T ss_pred HHHHHhCCCceEecCCCCCH-----HHHHHHHHHHHHHhcCCC--------HHHHHHHHH-hhhhhcceeeeeEeeeeCC Confidence 99999999999975432211 11111223444554 343 445666665 567899999888664 3 Q ss_pred CCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 210 QGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFI 289 (945) Q Consensus 210 ~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aa 289 (945) ...|..+.+.+|.++.+..+ +....++.. ++.....+++...+.|++...++. ++|.+.+..+......-... T Consensus 147 ~~~~~~~~~r~~~~f~~~~~--~~~~lr~~~--~~~~G~~l~~~k~i~~~~~~~~g~---p~g~gLlr~~~w~~~fK~~~ 219 (512) T protein:vir:19 147 MRVPVALHHRDPALFCANPD--NLNELRLRD--ASYHGLELQPFGWFMHRAKSRTGY---VGTNGLVRTLIWPFIFKNYS 219 (512) T ss_pred ceeeeeeeeeccccceeccC--CCcEEEecC--CCCCceeecCCceEEEeccCCCCC---cccccHHHHHHHHHHHHHHH Confidence 34577899999988765443 333333322 222223456666666665554433 47888899999888888888 Q ss_pred HHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccC-ChhhHH Q lcl|Aclame:pro 290 DKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKG-KRRDMQ 368 (945) Q Consensus 290 ee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~-sp~D~Q 368 (945) .++-..|..+.|+ |--+-.+ +...++++++++.+.+.+..+ ++ .++++.|+++.-+.. +..... T Consensus 220 ~~~w~~f~E~yG~-P~~igky----------~~~a~~~ek~~L~~al~~~~~--~a--~~iiP~~~~ie~~ea~~~~~~~ 284 (512) T protein:vir:19 220 VRDFAEFLEIYGL-PMRVGKY----------PTGSTNREKATLMQAVMDIGR--RA--GGIIPMGMTLDFQSAADGQSDP 284 (512) T ss_pred HHHHHHHHHHcCC-CeeEEec----------CCCCCHHHHHHHHHHHHHHhh--Cc--EEEecCCceEEEeecCCCCHHH Confidence 8988899888885 4444333 345678888888888887643 33 345667766654443 223345 Q ss_pred HHHHHHHHHHHHHHHhcCChhhcccc------cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----cc-- Q lcl|Aclame:pro 369 FKELAEFVARKICAVYQVSPQDVGIL------EGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-----NE-- 435 (945) Q Consensus 369 flE~rk~~~eeIA~aFGVPP~lLG~~------e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-----~~-- 435 (945) |.+..++..++|+.+. +|.+ ..|+++.. +.........+...++.++..+|+.|.+.. +. T Consensus 285 y~~li~~~d~~Isk~i------LGqtlTs~~g~~Gs~a~~-~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~ 357 (512) T protein:vir:19 285 FMAMIGWAEKAISKAI------LGGTLTTEAGDKGARSLG-EVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTI 357 (512) T ss_pred HHHHHHHHHHHHHHHH------hhhhhcccccccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC Confidence 7888999999999873 4432 12233332 234445677888899999999997665432 10 Q ss_pred ---ceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccc Q lcl|Aclame:pro 436 ---KDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLA 512 (945) Q Consensus 436 ---~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~ 512 (945) ..-+|.|+.....|.+..++.+.++...--++..++|+.+|+|....++.........++.. ... T Consensus 358 ~~~~~p~~~f~~~e~eDl~~~a~~~~~l~~G~~i~~~~i~e~~Gip~~~~~e~~~~~~~~~~~~~------------~~~ 425 (512) T protein:vir:19 358 DINRLPGIVFDTSEAGDITALSDAIPKLAAGMRIPVSWIQEKLHIPQPVGDEAVFTIQPVVPDNG------------SQK 425 (512) T ss_pred CccccceEEecCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCCCCccccccCCCcccccc------------ccc Confidence 12357888888889999998888876555678899999999975544443322111100000 000 Q ss_pred cccCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHhhhhhhhhHHHHHhhccCCccccccc-hHHHHHHHHhhhhHHHH Q lcl|Aclame:pro 513 QAMADQPSQQGGGVDENSSVPSEQKNAGLEVLRNLFKSLDANASENLKQVIELTNDDNYLKE-KELLTRVLKSVGLDSVS 591 (945) Q Consensus 513 ~~~~d~~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~e-~~~~~~~~~~~~~~~~~ 591 (945) . .....+ ........+ ........+.+.+.....+.+. .+... .+.| ++++.+..-+...+.+. T Consensus 426 ~--~~~~~~----~~~~~~~~d----~~~~~~~~~~~~~~~~~~~i~~-~~~~~----s~ee~~~~L~~l~~~ld~~~l~ 490 (512) T protein:vir:19 426 E--AALSAE----DIPQEDDID----RMGVSPEDWQRSVDPLLKPVIF-SVLKD----GPEAAMNKAASLYPQMDDAELI 490 (512) T ss_pred c--cccccc----CCCchhhHh----HHhhhHHHHHHHHHHHHHHHHH-HHHhC----CHHHHHHHHHHHhccCCHHHHH Confidence 0 000000 000000000 0000001111111111111111 11110 1111 11111111111111111 Q ss_pred HhhhhhhhcccccCCCcccccchhhHHHHHHhhccchhhhhhhhcccccchhh Q lcl|Aclame:pro 592 EFIENNSQTDVEVSAKDILSFKYNSLVEDETIYATEKDIVLRLLGKNSLDHRE 644 (945) Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (945) +.+. ..=.+-+|+|..+..-.+ T Consensus 491 ~~l~-------------------------------~a~~~A~l~G~~~~~~e~ 512 (512) T protein:vir:19 491 DMLT-------------------------------RAIFVADIWGRLDAAADH 512 (512) T ss_pred HHHH-------------------------------HHHHHHHHhhhhhhhccC Confidence 1111 011223344433322111 No 121 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=99.76 E-value=3e-17 Score=111.13 Aligned_cols=458 Identities=13% Similarity=0.060 Sum_probs=232.3 Q ss_pred eeccccccccc--c--cc--CCCCCcccccCcccceeccccCC--cccchhhhhhHHhhhccHHHHHHHHHHHHhhccCc Q lcl|Aclame:pro 71 LKKEKIIVPYN--H--QE--PPFKFNLFEYSPESLMYLPSISD--PDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKE 142 (945) Q Consensus 71 ~kK~K~i~p~~--~--r~--pp~~f~L~~~s~~sl~~lps~s~--p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP 142 (945) .+||--..+.+ . +. .++..++. .|..+. ........++... +..+.|.+|++.+...|.+++ T Consensus 1 v~~~~l~~e~at~~~~~d~~~~~~~~l~---------~~~~~il~~a~~g~~~~y~~l-~~D~~i~s~l~~rk~av~~~~ 70 (488) T protein:vir:99 1 MEKPALGREIATSGDGRDITRPFISGLQ---------VPNDSILQRRGGNDLRVYEEI-LSDAQVKTVWGQRQLAVVSRE 70 (488) T ss_pred CCccchhHHHHHHHhhhhhhccccCCCC---------CCChHHHHhhccCCHHHHHHH-hhChHHHHHHHHHHHHHhcCC Confidence 23332111111 1 11 11111110 011000 0000112344443 468899999999999999999 Q ss_pred eEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCC-C--eEEEEEEc Q lcl|Aclame:pro 143 LEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQ-G--NLVAITPV 219 (945) Q Consensus 143 ~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~-G--~pveL~pL 219 (945) |.|.+...+.. + ......+...|++++ |..++..|+ +...+|....+++.... | .+..+.+. T Consensus 71 w~i~p~~~~~~----~--~~~ae~v~~~l~~~~--------~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r 135 (488) T protein:vir:99 71 WKVEAGGDRPI----D--QAAAEHLEQQLQRVG--------WDRVTSKML-FGVFYGYAVSELIYGRDDRYITLEAIKVR 135 (488) T ss_pred ceEEcCCCChH----H--HHHHHHHHHHHhCCC--------HHHHHHHHH-hhhhhcceeEEEEEeecCCeeeEeeeeee Confidence 99975432211 1 112234555666542 344566665 56789999998877543 3 35689999 Q ss_pred CCceeEEEEcCCCceEEEEEEeeCCceeeeeccc-ceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 220 DGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKR-DVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYR 298 (945) Q Consensus 220 dPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~-DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~ 298 (945) +|.++.+ +.+++..+.... +......++.. ..+.+++...++ .++|.+.+..+......-....++-..|.. T Consensus 136 ~~~~f~~--d~~~~l~~~~~~--~~~~g~~lp~~~~~i~~~~~~~~g---~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E 208 (488) T protein:vir:99 136 NRRRFRY--DQDGGLRLLTPN--NMFEGEPCPAPYFWHFSTGADNDD---EPYGLGLAHWLYWPVFFKRNGIKFWLIFLD 208 (488) T ss_pred cccceee--cCCCceEEeccC--CCCCccccccCceEEEEeecCCCC---CcccchHHHHHHHHHHHHHhhHHHHHHHHH Confidence 9987754 445554433222 21122333322 334444444333 357889999999988888888888889988 Q ss_pred hCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCC-hhhHHHHHHHHHHH Q lcl|Aclame:pro 299 KGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGK-RRDMQFKELAEFVA 377 (945) Q Consensus 299 nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~s-p~D~QflE~rk~~~ 377 (945) +.|+ |--+-.++ +...++++++++.+.+.+..+ +++ ++++.|+++.-+... .....|.+..++.. T Consensus 209 ~yG~-P~~igky~---------~~~a~~~ek~~l~~av~~~~~--~~~--~viP~~~~ie~~ea~~~~~~~~~~li~~~d 274 (488) T protein:vir:99 209 KFGM-PTAVGRYD---------DKTATPEDKAKLLAALHAIQT--DSA--IIMPAGMQAELLEAGRSGTADYKTLHDTMD 274 (488) T ss_pred HcCC-ceeeeecC---------CCCCCHHHHHHHHHHHHHHhc--CcE--EEecCCceeEEeecCCCChHHHHHHHHHHH Confidence 8886 43443332 124577888888888777643 222 455666655544322 22235788889999 Q ss_pred HHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----c-cceeEEEeechhhcCHH Q lcl|Aclame:pro 378 RKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-----N-EKDIKLWFKEDDLEKER 451 (945) Q Consensus 378 eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-----~-~~g~~f~fd~~~l~D~k 451 (945) ++|+.+.-= ..+-+....|+++..+.. .......+...++.+++.+|+.|.+.. . ...-++.|+.....|.+ T Consensus 275 ~~Isk~iLG-qtlts~~~~Gs~a~~~vh-~~v~~d~~~aDa~~i~~tln~~li~~l~~~N~~~~~~p~~~~~~~e~edl~ 352 (488) T protein:vir:99 275 ATIAKVGLG-QVASTQGTPGRLGNDDLQ-ADVRLDLVKADADLICESFNLGPARWLTEWNFPGAQPPRVYRVIEEPEDIT 352 (488) T ss_pred HHHHHHHhh-hhhcccccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcCCceeEecCCCcccHH Confidence 999887411 122222223344444333 344577888899999999997554321 1 11235778888888999 Q ss_pred HHHHHHHHHHhC-CC-cCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCC Q lcl|Aclame:pro 452 DWWNIIQGQLNT-GF-RSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDEN 529 (945) Q Consensus 452 erae~~~~~v~~-Gi-mT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~ 529 (945) +++++++++++. |+ ++..++|+.+|+|+-..++....+. +....+..+.+ .+.. T Consensus 353 ~~a~~~~~l~~~~G~~i~~~~i~e~~Gip~~~~~~~~~~~~------------------~~~~~~~~~~~------~~~~ 408 (488) T protein:vir:99 353 AKAERDEKVFRMSGFRPTRGYVQETYGVEVESTQAEATAPT------------------PSTEFAEGDQP------SDPA 408 (488) T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHcCCCCcccccccccCC------------------CcccCCCCCCC------CCch Confidence 999999999986 64 7888899999999765443321110 00000000000 0000 Q ss_pred ccccc----hhHHHHHHHHHHHHhhhhhhh--hHHHHHhhccCCccccccchHHHHHHHH---hhhhHHHHHhhhhhhhc Q lcl|Aclame:pro 530 SSVPS----EQKNAGLEVLRNLFKSLDANA--SENLKQVIELTNDDNYLKEKELLTRVLK---SVGLDSVSEFIENNSQT 600 (945) Q Consensus 530 e~~~s----e~k~a~~~~lr~~~k~l~a~~--~~~~~~~~dl~n~~~~l~e~~~~~~~~~---~~~~~~~~~~~~~~~~~ 600 (945) ....+ +.+.+....+..+.+.++..- .+....+.++-.+=..-+..+.|.+.|- =.|+..+.. +++... T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~a~s~ee~~~~L~~l~~~~d~~~l~~~l~~a~~~a~l~G~~~~~~--e~~~~~ 486 (488) T protein:vir:99 409 AAMAPQLAEAMQPVVGNWTTQLRTLIEQASSLEDLRERLLDLAPQLSLDQYAQAMAEGLEAAHLAGRNDVQE--ELDGRE 486 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhHhh--hhcccC Confidence 00001 111111122222222221100 0111111111100000011333333332 223333332 212222 Q ss_pred cc Q lcl|Aclame:pro 601 DV 602 (945) Q Consensus 601 ~~ 602 (945) .+ T Consensus 487 ~~ 488 (488) T protein:vir:99 487 QI 488 (488) T ss_pred CC Confidence 21 No 122 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.72 E-value=4.7e-17 Score=110.11 Aligned_cols=441 Identities=8% Similarity=-0.060 Sum_probs=215.8 Q ss_pred hhc-cceeeeeeeeeecceeeeccccccccccccCC-CCCcccccCccc--ceeccccCCcccch------hhhhhHHhh Q lcl|Aclame:pro 52 LAW-NSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPP-FKFNLFEYSPES--LMYLPSISDPDAFF------LINLFRKYR 121 (945) Q Consensus 52 ~~~-~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp-~~f~L~~~s~~s--l~~lps~s~p~~~~------~~~v~~~~A 121 (945) +.| +.++-| +. |+. .++|... ....-++....+ ....|....++... +..-.+..+ T Consensus 1 mn~~dr~i~~-~s----------P~~---~~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~~~~~~~~lr~RaRdl~ 66 (502) T protein:vir:79 1 MAILDDVIGV-FS----------PGW---KAARLRSRAVIQAYEAVKTTRTHKARRENRTADQLSQYGAVSLREQARYLD 66 (502) T ss_pred CchHhhHHhh-cC----------hHH---HHHHHhhHHHHhhccccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHH Confidence 222 222211 11 100 0000000 000111111111 11112211222221 223346667 Q ss_pred hccHHHHHHHHHHHHhhccC-ceEEEEec--cCcccccccchhhcccHHHHHHh--ccCccCChHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 122 FNNDSKLIKVSEIPKKLTSK-ELEIYKHI--EDKHVNYYLKRIRDARNILEFLE--RPDPYFSEVNSWEYLLGMVLDDIL 196 (945) Q Consensus 122 m~nsaV~aCV~iIA~~IAsL-P~~VyRrt--edg~ee~~~r~~a~dhpL~~LL~--rPNp~mT~~eFwetli~~Lv~dlL 196 (945) .+++.+.++|+.+...+-.. .+.+..+- .+... ...-...+..+++ .-|++.++...|..+...++..++ T Consensus 67 rNn~~a~~av~~~~~nvVG~ggi~~~~~~~~~~~~~-----~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~ 141 (502) T protein:vir:79 67 NNHDLVIGVFDKLEERVVGKNGIIVEPHPVLRNGAI-----ARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWL 141 (502) T ss_pred hcChHHHHHHHHHHHhhccCCceeeeeccCCCChhH-----HHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHH Confidence 89999999999877766543 44443221 11110 0111223333442 124444444444556667788888 Q ss_pred ccCCeEEEEEecCC-------CeEEEEEEcCCceeE------------EEEcCCCceEEEEEEeeC-----Cceeeeecc Q lcl|Aclame:pro 197 TIDRGAIVKIRDEQ-------GNLVAITPVDGTTIK------------PILSEDTGIVVGYVQEVD-----GAIVAHFDK 252 (945) Q Consensus 197 l~Gna~i~iird~~-------G~pveL~pLdPs~Vt------------v~~d~dG~~~~~Yv~~~d-----G~~~~~~~a 252 (945) ..|.+++.+.++.. +.+..|..|+|+++. |..|..|....++..... +.....+++ T Consensus 142 ~dGE~f~~~~~~~~~~~~~g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA 221 (502) T protein:vir:79 142 RDGEVFAQMVSGRINSLTPSAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDA 221 (502) T ss_pred hCCceEEEEeecccCccCCCcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEech Confidence 99999988766443 246789999998884 234444544433332211 234467899 Q ss_pred cceeeeeeccCCCCccCcccccHHHHHHHHHHH---HHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHH Q lcl|Aclame:pro 253 RDVVLFRQNLTPDVYMYGYSLPPIEILYKVILS---DIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQL 329 (945) Q Consensus 253 ~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~---~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~ 329 (945) ++|+|+.....++- . -|+|.+..++..+.. ...++...++. .+...++++.+.+.............+ T Consensus 222 ~~vlH~f~~~r~gQ-~--RGis~lapvl~~l~~l~~~~dael~~a~i----~A~~~~fi~~~~~~~~~~~~~~~~~~~-- 292 (502) T protein:vir:79 222 ERMLHLKFVRRLHQ-M--RGTSLLSGVLIRLSALKEYEDSELTAARI----AAALGMYIRKGDGQSYEPDGNGSKENE-- 292 (502) T ss_pred hheEEeecccCCcc-c--cCCchHHHHHHHHHHHhHHHHHHHHHHHH----hhhheeeeecCCCcccccccCCCCCcc-- Confidence 99999976655443 2 477777776655544 34444444433 234566776544322211111100000 Q ss_pred HHHHHHHHHHhcCcccCccc-ccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHH- Q lcl|Aclame:pro 330 ESIQRQLQAIMMGDYTQVPI-LSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMAS- 407 (945) Q Consensus 330 erlKe~we~~~sG~Nagkp~-VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~- 407 (945) ....-..|..+ .|..|.+++..+.+.....|.+..+.....||+.+|||-+.+-..-.+|||++.+... T Consensus 293 ---------~~~~l~pG~i~~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~nySs~R~~~~e 363 (502) T protein:vir:79 293 ---------RELTIQPGIIYDDLKPGEEIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARNYNGTYSAQRQELVE 363 (502) T ss_pred ---------ccccccCCccccccCCCceeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccccchHHHHHHHHHH Confidence 00001234333 5888999888877666678889999999999999999977774333458877654433 Q ss_pred ----------HHHHHHHHHHHHH-HHHHHHH-hhc-ccc--ccceeEEEeechhh--cCHHHHHHHHHHHHhCCCcCHHH Q lcl|Aclame:pro 408 ----------LTKAKGLEPLMAT-ISKGFDE-VVS-EFR--NEKDIKLWFKEDDL--EKERDWWNIIQGQLNTGFRSINE 470 (945) Q Consensus 408 ----------~F~~~tL~Pll~~-IEqeLn~-kL~-~~~--~~~g~~f~fd~~~l--~D~kerae~~~~~v~~GimT~NE 470 (945) .+...-++|+.+. ++.++-. .+. |.. ....+.+.|..... .|+...+++...++++|..|.-+ T Consensus 364 ~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~ 443 (502) T protein:vir:79 364 STDGYLILQDWFIGAVTRPMYRAWLKQAVASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESD 443 (502) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHH Confidence 3445566665443 4444432 221 111 11234566655554 48999999999999999999999 Q ss_pred HHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhHH Q lcl|Aclame:pro 471 ARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKN 538 (945) Q Consensus 471 aRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~ 538 (945) +-+..|.+|-+--++.. .+.......+...+..+...+...+.+..+.+..+. ..+.++ T Consensus 444 ~~a~~G~D~~~v~~q~a--------~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~e~~~~-~~~~e~ 502 (502) T protein:vir:79 444 WVRAGGRNPDDVKRRRK--------AEIDENRKLDLVFDTDPASDKGGSSAATKRQEPQHT-DDQSEE 502 (502) T ss_pred HHHHcCCCHHHHHHHHH--------HHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC Confidence 99999998753222111 000111111111100000000000000000000000 000000 No 123 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.72 E-value=2.8e-17 Score=111.32 Aligned_cols=444 Identities=8% Similarity=-0.052 Sum_probs=224.3 Q ss_pred eeccccccccccccCCCCCcccccCcccceeccccC----Ccccch------hhhhhHHhhhccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 71 LKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSIS----DPDAFF------LINLFRKYRFNNDSKLIKVSEIPKKLTS 140 (945) Q Consensus 71 ~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s----~p~~~~------~~~v~~~~Am~nsaV~aCV~iIA~~IAs 140 (945) .|.|-.+.|.++.........+...+.......+|. .++... +..-.+..+.+|+.+.+||+.+.+.+-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvVG 80 (530) T protein:vir:38 1 MKIPSLVGPDGKTSLREYAGYHGGGGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAANAVQLHQDHIVG 80 (530) T ss_pred CccceeecCccccchHHHhhhhcccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhC Confidence 566666666554443332222222221111122222 222221 2334566678999999999998888877 Q ss_pred CceEEEEecc------CcccccccchhhcccHHHHHH----hccCc--cCChHHHHHHHHHHHHHHHhccCCeEEEEEec Q lcl|Aclame:pro 141 KELEIYKHIE------DKHVNYYLKRIRDARNILEFL----ERPDP--YFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD 208 (945) Q Consensus 141 LP~~VyRrte------dg~ee~~~r~~a~dhpL~~LL----~rPNp--~mT~~eFwetli~~Lv~dlLl~Gna~i~iird 208 (945) ..|.+..+.. +++.. ..-...+..++ +.|+. +.++...|..+...++..++..|.+++.+.+. T Consensus 81 ~Gi~~~~~p~~~~l~~~~~~~-----~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~ 155 (530) T protein:vir:38 81 SFFRLSYRPSWRYLGINEEDS-----RAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQATWD 155 (530) T ss_pred CCceeeeccchhhcCCCHhHH-----HHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEeeec Confidence 7887654311 11110 11112233333 24543 33333334456667788888999999887765 Q ss_pred CC-Ce--EEEEEEcCCceeEE--------------EEcCCCceEEEEEEee--CCc---------eeeeecccceeeeee Q lcl|Aclame:pro 209 EQ-GN--LVAITPVDGTTIKP--------------ILSEDTGIVVGYVQEV--DGA---------IVAHFDKRDVVLFRQ 260 (945) Q Consensus 209 ~~-G~--pveL~pLdPs~Vtv--------------~~d~dG~~~~~Yv~~~--dG~---------~~~~~~a~DVIh~r~ 260 (945) .. |. ++.|..|+|+++.. ..|..|....+|.... .|. ....+++.+|||+.. T Consensus 156 ~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~vlH~f~ 235 (530) T protein:vir:38 156 SDSTRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRPSFIHVFE 235 (530) T ss_pred cCCCCccceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChhHeEeecc Confidence 43 32 56889999988742 2233443332233221 111 123355668999876 Q ss_pred ccCCCCccCcccccHHHHHHHHHHHH---HHHHHHHHHHHHhCCCCceEEEEeccccccccccc-hhccHHHHHHHHHHH Q lcl|Aclame:pro 261 NLTPDVYMYGYSLPPIEILYKVILSD---IFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIY-PQLSREQLESIQRQL 336 (945) Q Consensus 261 n~~~d~~~~GyGlSPI~aa~~~I~~~---~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~-~~LS~Eq~erlKe~w 336 (945) ...++. . -|+|.+..++..+... ..++...++. .+.-.++++.+.+........ +....++...+.... T Consensus 236 ~~r~gQ-~--RGis~lapvl~~l~~l~~y~dael~~a~i----~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (530) T protein:vir:38 236 PMEDGQ-T--RGANAFYSVMEQMKMLDTLQNTQLQSAIV----KAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWL 308 (530) T ss_pred ccCCCc-c--cCCchHHHHHHHHHHHhHHHHHHHHHHHH----hhhheeeeeccCCccccccccccCCcccccccccccc Confidence 554433 2 4777777666555443 3344333332 233456666544322111100 000111111111111 Q ss_pred HH---HhcC----cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHH- Q lcl|Aclame:pro 337 QA---IMMG----DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMAS- 407 (945) Q Consensus 337 e~---~~sG----~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~- 407 (945) .. .+.+ -..|.+..|..|.+++..+.+-...+|.+..+.....||+.+|||-+.| |...+.|||.+.+... T Consensus 309 ~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e 388 (530) T protein:vir:38 309 GEMAAYYSAAPVRLGGARVPHLLPGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANE 388 (530) T ss_pred hhhhhcccccceeccCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHH Confidence 11 0110 1245566788899988887776667888999999999999999998877 6667778886554433 Q ss_pred ----------HHHHHHHHHHHH-HHHHHHHHhhcc-cc-c--------cceeEEEeechhh--cCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 408 ----------LTKAKGLEPLMA-TISKGFDEVVSE-FR-N--------EKDIKLWFKEDDL--EKERDWWNIIQGQLNTG 464 (945) Q Consensus 408 ----------~F~~~tL~Pll~-~IEqeLn~kL~~-~~-~--------~~g~~f~fd~~~l--~D~kerae~~~~~v~~G 464 (945) .+...-+.|+.. ++++++..-..+ +. . .....+.|..... .|+...+++...++++| T Consensus 389 ~~r~~~~~q~~~~~~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G 468 (530) T protein:vir:38 389 SWAYFMGRRKFVASRQACQMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAG 468 (530) T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcC Confidence 334444455444 455555432221 10 0 0112345554444 48999999999999999 Q ss_pred CcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccc Q lcl|Aclame:pro 465 FRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPS 534 (945) Q Consensus 465 imT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~s 534 (945) ..|.-++-.+.|.+|-+--++.. .+.......+...+..+...+.....++....++....+ T Consensus 469 ~~s~~~~~a~~G~D~~~v~~q~a--------~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~d~~~~a 530 (530) T protein:vir:38 469 LSTYEKECAKRGDDYQEIFAQQV--------RESMERRAAGLNPPAWAAAAFEAGVKKSNEEEQDGARAA 530 (530) T ss_pred CCCHHHHHHHcCCCHHHHHHHHH--------HHHHHHHHcCCCCCCCcccccCCCCCCCCCCCCCCCCCC Confidence 99999999999988753222110 000111111111110000000000000000000000000 No 124 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=99.72 E-value=1.6e-16 Score=107.11 Aligned_cols=423 Identities=11% Similarity=-0.003 Sum_probs=224.7 Q ss_pred eeeecceeeeccccccccccccCCCCCcccccCcccceeccc----cCCcc----cchhhhhhHHhhhccHHHHHHHHHH Q lcl|Aclame:pro 63 IIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPS----ISDPD----AFFLINLFRKYRFNNDSKLIKVSEI 134 (945) Q Consensus 63 ~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps----~s~p~----~~~~~~v~~~~Am~nsaV~aCV~iI 134 (945) .+-|+|+ |+..+|......+..-+-..+....+...|+ ..... ......+++.. +..+.|.+|++.+ T Consensus 1 m~k~~~k----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~ly~~m-~~D~hi~s~l~~R 75 (448) T protein:vir:79 1 MAKRGRK----PKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLVYHKM-LSDGTVKNALNYI 75 (448) T ss_pred CCCCCCC----CccccCcccccccccchhhhhhhhhhcccccccccccchhHhhccccchHHHHHH-hhChHHHHHHHHH Confidence 2333333 5555555332222221111111111111111 00000 01123456554 3578999999999 Q ss_pred HHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec--CCCe Q lcl|Aclame:pro 135 PKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD--EQGN 212 (945) Q Consensus 135 A~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird--~~G~ 212 (945) ...|.+++|.|-+...+.. .......+...|..|+....... |..++..|+ +...+|-.+.+++.. .+|. T Consensus 76 k~av~~~~w~v~p~~~~~~------~~~~ae~v~~~l~~~~~~~~~~~-f~~~~~~~l-da~~~G~s~~Eivw~~~~~g~ 147 (448) T protein:vir:79 76 FGRIRSAKWYVEPASTDPE------DIAIAAFIHAQLGIDDASVGKYP-FGRLFAIYE-NAYIYGMAAGEIVLTLGADGK 147 (448) T ss_pred HHHHhcCCceEecCCCCHH------HHHHHHHHHHHhhhhhhhhccCC-HHHHHHHHH-HhhhhcceeEEEEeeecCCCc Confidence 9999999999965332221 11112233444544443222222 344555554 567899999988764 3564 Q ss_pred --EEEEEEcCCceeE-EEEcCCCceEEEEEEeeC-----CceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHH Q lcl|Aclame:pro 213 --LVAITPVDGTTIK-PILSEDTGIVVGYVQEVD-----GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVIL 284 (945) Q Consensus 213 --pveL~pLdPs~Vt-v~~d~dG~~~~~Yv~~~d-----G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~ 284 (945) +..|.+.++.++. +..+.+++..+....... +.....++..-++|+++ ..++ .++|.+.+..+..... T Consensus 148 ~~~~~l~~r~~~~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~-~~~g---~p~g~gLlr~~~w~~~ 223 (448) T protein:vir:79 148 LILDKIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLH-NDDG---SFTGQSALRAAVPHWL 223 (448) T ss_pred eecccccccCCccccceeeecCCceEEeecCCcccccccCCCccccccceEEEEec-CccC---CcccchhHHHHHHHHH Confidence 3467777776442 334445544432221111 11123345666777654 3332 3578888999999888 Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCCh Q lcl|Aclame:pro 285 SDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKR 364 (945) Q Consensus 285 ~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp 364 (945) .-....++-+.|....|+ |--|...+.+ .+.++++++.+.+...+...|.+++ ++++.|+++.-++... T Consensus 224 fK~~~~~~w~~f~E~yG~-P~~vgky~~g--------a~~~~~~~~~l~~av~~i~~g~~a~--~iiP~~~~ie~~ea~~ 292 (448) T protein:vir:79 224 AKRALILLINHGLERFMI-GVPTLTIPKS--------VRQGTKQWEAAKEIVKNFVQKPRHG--IILPDDWKFDTVDLKS 292 (448) T ss_pred HHHHHHHHHHHHHHHcCC-ceEEEecCCC--------CCcCHHHHHHHHHHHHHHhcCCceE--EEecCCceEEEEecCC Confidence 888888888888888886 4445554432 2334667777877777776665655 4567887766655444 Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----c-ccee Q lcl|Aclame:pro 365 RDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-----N-EKDI 438 (945) Q Consensus 365 ~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-----~-~~g~ 438 (945) ....+.+..++..++|+.+.-= ..+--....++++...+.......+.+.-.+++++..+|+.|++.. + ...+ T Consensus 293 ~~~~~~~~i~~~d~~Isk~iLG-qtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg~~~~~ 371 (448) T protein:vir:79 293 AMPDAIPYLTYHDAGIARALGI-DFNTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPSATRF 371 (448) T ss_pred CcccHHHHHHHHHHHHHHHHhh-hhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC Confidence 4455667888889999877632 1111111222333333333344566778889999999998665432 1 1223 Q ss_pred -EEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCC Q lcl|Aclame:pro 439 -KLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMAD 517 (945) Q Consensus 439 -~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d 517 (945) +|.|+.....|.+..++.+.+++..+-..-+-+|+.+|+|.-..++.+... + ..++. ... T Consensus 372 P~~~f~~~e~~Dl~~~a~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~a~---------------~-~~~~~---~~~ 432 (448) T protein:vir:79 372 PRLTFEMEERNDFSAAANLMGMLINAVKDSEDIPTELKALIDALPSKMRRAL---------------G-VVDEV---REA 432 (448) T ss_pred cEEEecCCChHHHHHHHHHhhhhhccchhhHHHHHHhhcCCCCCCCcccccc---------------C-CCCcc---ccc Confidence 678888888888889999999888765544456777777632111111000 0 00000 000 Q ss_pred CCCCCCCCCCCCccccchhHHHHHHHHHHHHh Q lcl|Aclame:pro 518 QPSQQGGGVDENSSVPSEQKNAGLEVLRNLFK 549 (945) Q Consensus 518 ~~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k 549 (945) .. .+...+-- +.+.-+ T Consensus 433 -~~-----------~~~~~~~~----~~~~~~ 448 (448) T protein:vir:79 433 -VR-----------QPADSRYL----YTRRRR 448 (448) T ss_pred -cc-----------CCccccch----hhcccC Confidence 00 00000000 000000 No 125 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=99.71 E-value=3.1e-16 Score=105.60 Aligned_cols=423 Identities=11% Similarity=-0.005 Sum_probs=225.6 Q ss_pred eeecceeeeccccccccccccCCCCCcccccCcccceeccc----cCCc----ccchhhhhhHHhhhccHHHHHHHHHHH Q lcl|Aclame:pro 64 IFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPS----ISDP----DAFFLINLFRKYRFNNDSKLIKVSEIP 135 (945) Q Consensus 64 ~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps----~s~p----~~~~~~~v~~~~Am~nsaV~aCV~iIA 135 (945) .=||++ |||..+|....-.+...+-..+....+...|+ ...+ .......++++.. ..+.|.+|++.+. T Consensus 1 m~kk~~---k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~ly~~m~-~D~hi~s~l~~Rk 76 (448) T protein:vir:77 1 MAKRGR---KPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLVYHKML-SDGTVKNALNYIF 76 (448) T ss_pred CCCCCC---CCcccCCcccccchhhhhhhccchhhhcccccccccccchhHhhccccchHHHHHHh-hChHHHHHHHHHH Confidence 334442 46555554443333222211111121111111 0000 0111245566554 5789999999999 Q ss_pred HhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec--CCCe- Q lcl|Aclame:pro 136 KKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD--EQGN- 212 (945) Q Consensus 136 ~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird--~~G~- 212 (945) ..|.+++|.|-+...+.. + ......+...|..+........ |..++..|+ +...+|-...+++.. .+|. T Consensus 77 ~av~~~~w~v~p~~~~~~----d--~~~ae~v~~~l~~~~~~~~~~~-f~~~i~~~l-da~~~G~s~~Eivw~~~~dg~~ 148 (448) T protein:vir:77 77 GRIRSAKWYVEPASTDPE----D--IAIAAFIHAQLGIDDASVGKYP-FGRLFAIYE-NAYIYGMAAGEIVLTLGADGKL 148 (448) T ss_pred HHHhcCCceEecCCCCHH----H--HHHHHHHHHHhhchhhhhccCC-HHHHHHHHH-HhhhhcceeEEEEEeecCCCce Confidence 999999999865332221 1 1122234444444332221122 345566664 678899999988764 3565 Q ss_pred -EEEEEEcCCceeE-EEEcCCCceEEEEEEee-----CCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHH Q lcl|Aclame:pro 213 -LVAITPVDGTTIK-PILSEDTGIVVGYVQEV-----DGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILS 285 (945) Q Consensus 213 -pveL~pLdPs~Vt-v~~d~dG~~~~~Yv~~~-----dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~ 285 (945) +..|.+.++..++ ...+.+++..+...... .+.....+|..-++|+++ ..++ .++|.+.+..+...... T Consensus 149 ~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~-~~~g---~p~g~gLlr~~~w~~~f 224 (448) T protein:vir:77 149 ILDKIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFLH-NDDG---SFTGQSALRAAVPHWLA 224 (448) T ss_pred eeccccccCCCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEEec-CCcC---CcccchHHHHHHHHHHH Confidence 3467777776542 33455555443322111 111123446667777754 3332 35788888888888888 Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChh Q lcl|Aclame:pro 286 DIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRR 365 (945) Q Consensus 286 ~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~ 365 (945) -....++-..|....|+ |--|...+.+ ...++++++.+.+...+...|.+++ ++++.|+++.-++.... T Consensus 225 K~~~~~~w~~f~E~yG~-P~~vgky~~g--------a~~~~~~~~~l~~av~~i~~g~~a~--~iiP~g~~ie~~ea~~~ 293 (448) T protein:vir:77 225 KRALILLINHGLERFMI-GVPTLTIPKS--------VRQGTKQWEAAKEIVKNFVQKPRHG--IILPDDWKFDTVDLKSA 293 (448) T ss_pred HHhhHHHHHHHHHHcCC-ceeEEecCCC--------CCCCHHHHHHHHHHHHHHhcCCceE--EEecCCceEEEEecCCC Confidence 88888888888888775 4445554332 2235567777877777766665554 45677777665554444 Q ss_pred hHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----c-ccee- Q lcl|Aclame:pro 366 DMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR-----N-EKDI- 438 (945) Q Consensus 366 D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~-----~-~~g~- 438 (945) ...+.+..++..++|+.+..-. .+--....++++...+.........+.-.++++++.+|+.|.+.. + ...+ T Consensus 294 ~~~~~~~i~~~d~~Isk~iLGq-tlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg~~~~~P 372 (448) T protein:vir:77 294 MPDAIPYLTYHDAGIARALGID-FNTVQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPGATRFP 372 (448) T ss_pred ccCHHHHHHHHHHHHHHHHhcc-ccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC Confidence 4456678888999998876432 221112223334443333345567778899999999998665432 1 1222 Q ss_pred EEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCC Q lcl|Aclame:pro 439 KLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQ 518 (945) Q Consensus 439 ~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~ 518 (945) +|.|+.....|.+..++.+.+++ +-+|+.+|+|.-.++... .. .. .+.+..+.+. T Consensus 373 ~~~f~~~e~eDl~~~a~~~~~l~-------~~~~~~~~ip~~~~~~~~---------~~----~~-----~~~~~~~~~~ 427 (448) T protein:vir:77 373 RLTFEMEERNDFSAAANLMGMLI-------NAVKDSEDIPTELKALID---------AL----PS-----KMRRALGVVD 427 (448) T ss_pred EEEecCCChhhHHHHHHHhHHHH-------HHHHHHhcCCccCCcCCC---------CC----ch-----hcccccCCCC Confidence 67888888889888898888776 458999998743221100 00 00 0000000000 Q ss_pred CCCCCCCCCCCccccchhHHHHHHHHHHHHhh Q lcl|Aclame:pro 519 PSQQGGGVDENSSVPSEQKNAGLEVLRNLFKS 550 (945) Q Consensus 519 ~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k~ 550 (945) + ..+....+...+....+. |+ T Consensus 428 ~------~~~~~~~~~~~~~~~~r~-----~~ 448 (448) T protein:vir:77 428 E------VREAVRQPADSRYLYTRR-----RR 448 (448) T ss_pred C------CCchhhcchhhHHHHhhh-----cC Confidence 0 001111111121111111 11 No 126 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.70 E-value=8.4e-17 Score=108.71 Aligned_cols=697 Identities=13% Similarity=0.091 Sum_probs=279.0 Q ss_pred hhhhHhhhheeccccccCccccccchhc----------hhhhhc-ccCC--------CCcchhhhhhhhhccceeeeeee Q lcl|Aclame:pro 3 SLENIIKGFIVNANEQKRPSFSSNIKAN----------VDSLSR-GKDY--------PGFKPLLTYRALAWNSTVVYSII 63 (945) Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 63 (945) -...+.|.|.+......-|. -+.+. ||++.+ ++.+ |.+++.-+|-+++-+--+.++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (862) T protein:vir:99 1 MFKKLFKRFLIRQEQSPEPT---PVEASIADEIPRHDPLDPLARTRQNWPVQKEKPNPIIRSVKDFPFVEISDSVNAKSV 77 (862) T ss_pred ChhHHHHHHhhhhhcCCCCc---cchhhhhhhccccCccchHHhhcccCCcccccCCCCCCcccccccccccccccchhh Confidence 34556677766432211111 12222 222221 1111 22222222222222222222211 Q ss_pred eeecceeeeccccccccccccCCCC-Ccccc----------cCcccce-eccccCCcccchhhhhhHHhhhccHHHHHHH Q lcl|Aclame:pro 64 IFRKNQVLKKEKIIVPYNHQEPPFK-FNLFE----------YSPESLM-YLPSISDPDAFFLINLFRKYRFNNDSKLIKV 131 (945) Q Consensus 64 ~~k~n~l~kK~K~i~p~~~r~pp~~-f~L~~----------~s~~sl~-~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV 131 (945) ...+.-.=... .+....-+.+. .++.. .++..+. .+..|..+..+....+ ...+.+++.++.+| T Consensus 78 ~~~~~a~~~a~---~~~~~~~~~~~~Dgl~n~~~~lG~~~~~s~y~~~~~~~~~~~~~~f~gyql-~alY~~~~larkiV 153 (862) T protein:vir:99 78 SGKNFAMDSAV---RSAIKAITGFAMDDGGGAPVPIGAEGKQSSYAVPEALQDWYLSQGFIGHQA-CALIAQHWLVDKAC 153 (862) T ss_pred hhhhhcchhhc---chhhhhhhhhhhhcchhhhhhccccccccccccchhccccccccCcccHHH-HHHHHhCchhhhhh Confidence 11000000000 00000000000 00000 0000000 0011122222223333 34567899999999 Q ss_pred HHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCC- Q lcl|Aclame:pro 132 SEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQ- 210 (945) Q Consensus 132 ~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~- 210 (945) +.+|+++-+-++.|.-. .++.+.. ......+.+.+.+ ...|+.+...+.+..+.+|.+.++.+...+ T Consensus 154 d~pAeDatR~g~~I~~~-~d~~e~~----~e~~~~ie~~~~r-------L~v~~~l~eair~~RLyGga~ililv~~~D~ 221 (862) T protein:vir:99 154 SLAGEDAIRNGWHLKSL-GEGEEID----EESLEKFKAIDVE-------FKVKENLIEFNRFKNVFGIRVAIFVVDSEDP 221 (862) T ss_pred hhhhHHHhhCCceEeec-CcccccC----HHHHHHHHHHHHH-------hhHHHHHHHHHHhcccccceEEEEEecCcCc Confidence 99999999999987521 1111110 0011123333322 234556666565555554444443433222 Q ss_pred --------------CeEEEEEEcCCceeEEEE----cCC--C---ceEEEEEEeeCCceeeeecccceeeeeeccCCCC- Q lcl|Aclame:pro 211 --------------GNLVAITPVDGTTIKPIL----SED--T---GIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDV- 266 (945) Q Consensus 211 --------------G~pveL~pLdPs~Vtv~~----d~d--G---~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~- 266 (945) |.+.+|.+|+|.++.+.. ..+ . +.+..|. ..|. .+.++-+|++.....++. T Consensus 222 ~~LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~--I~g~---~IH~SRliif~g~~vpd~l 296 (862) T protein:vir:99 222 DYYEKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWI--ISGQ---KYHRSHLIIARGPQPADIL 296 (862) T ss_pred hhhhcCcCcccccccceeEEEEechhhhcccccccccccccccccCCceeee--ecCe---eeccceeEEecCCCchhhh Confidence 455788889988876532 112 1 1122222 2332 355566666654433332 Q ss_pred --ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 267 --YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDY 344 (945) Q Consensus 267 --~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~N 344 (945) ...++|.|.++.+...|.....+.......+.+.... ++.++.. ..+..+ +.+.+.++....+.+ T Consensus 297 k~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~---v~ktd~l--------~~l~~e--d~l~~r~~~~~~~rd 363 (862) T protein:vir:99 297 KPTYIFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTT---AIHTDTA--------KAIANE--DKFIQRLMFWVRYRD 363 (862) T ss_pred hccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc---eeechhH--------hhhccH--HHHHHHHHHHHhccC Confidence 1223599999999999999999999888888765432 3443221 122222 234444444444433 Q ss_pred cCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhh-cccccCCCcccHHHHHHHHHH-------HHHHH Q lcl|Aclame:pro 345 TQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQD-VGILEGSNKATAEVMASLTKA-------KGLEP 416 (945) Q Consensus 345 agkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~l-LG~~e~gT~SN~Eqq~~~F~~-------~tL~P 416 (945) ..++++++.+-+|..++.+..+.. +......+.||++.+||..+ +|....|..++.+.....|+. .-|.| T Consensus 364 N~Gi~liD~eEe~e~ls~slSGL~--dll~~~~q~IAaas~IP~tiLfGqspaGlnATGE~D~~nYyD~I~s~QE~~L~P 441 (862) T protein:vir:99 364 NHAVKVLGTDETMEQFDTSLADFD--AVIMGQYQLVASIAKTPATKLLGTAPKGFNSTGEFETISYHEELESIQEHVYMP 441 (862) T ss_pred cceeEEecCCCceeEEecccCChH--HHHHHHHHHHHhhhCCCceeecccCcccccCchHHHHHHHHHHHHHHHHHHHHH Confidence 344678888888888877666554 67777788999999999995 455556666777777777765 45778 Q ss_pred HHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHH-------HHHHHHHhCCCcCHHHHHHHH------hCCCCCCc Q lcl|Aclame:pro 417 LMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWW-------NIIQGQLNTGFRSINEARMEK------GLEPVPWG 483 (945) Q Consensus 417 ll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kera-------e~~~~~v~~GimT~NEaRe~l------GlpPveGG 483 (945) .++++...+...+.. ..++.+.|+.+..++.++++ +++++++++|+++++|+|+++ |++.++.. T Consensus 442 ~LerL~~li~~~lg~---~~d~~ieFnpL~~~sekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~de 518 (862) T protein:vir:99 442 FLQRHYLISRLSLGI---QHEIDVVMEPVASMTAQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKE 518 (862) T ss_pred HHHHHHHHHHHhcCC---CCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCcc Confidence 888887766554421 24688999988888776665 457788999999999999986 44444332 Q ss_pred cccccc---ccc------------ccccccchhhccCCCCcccccc-----cCCCCCCCCCCCCCCc------ccc---- Q lcl|Aclame:pro 484 DVPFSG---LRN------------WKPEDEQAKAQQGAMPPQLAQA-----MADQPSQQGGGVDENS------SVP---- 533 (945) Q Consensus 484 D~~l~~---~n~------------~~ped~~a~~~~~a~~~~~~~~-----~~d~~~~~~g~~dd~e------~~~---- 533 (945) +....+ ..+ ..+.+....+. .+.+.+..+. ....+++..+.++... +.. T Consensus 519 d~E~d~~~~~e~~~~~e~~g~a~~~ap~de~~aga-~~~~~e~d~~~~p~~~~~~~g~~~~~t~~~~a~~p~~~~~~~~~ 597 (862) T protein:vir:99 519 DAEETPGASPENLAAYQKAGAAQETASAKETQAGA-AVTTAEGDQPNVQMVPSMKPGQMVGPEVGITAPMPEDDAPVAGV 597 (862) T ss_pred cccccCCCCcccccccccCCccccccccccccccc-CCccccCCcccccccCCCCCCCccccccccccCCCccccccCcc Confidence 211100 000 00110000000 0000000000 0000000000000000 000 Q ss_pred ----chhHH----HHHHHHHHHHhhhhhhhhHHHHHhhccCCccccccchHHHHHHHHhhhhHHHHHh---hhhhhhccc Q lcl|Aclame:pro 534 ----SEQKN----AGLEVLRNLFKSLDANASENLKQVIELTNDDNYLKEKELLTRVLKSVGLDSVSEF---IENNSQTDV 602 (945) Q Consensus 534 ----se~k~----a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 602 (945) .+.++ +..+++......+.+- +....+..+ +++++.-+.. .+..+.+-| T Consensus 598 ~~~~~e~~~~~~~~~~~v~~~~~~~~~~~------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 657 (862) T protein:vir:99 598 VAKLAELQQAQMGAVTGVLARLVEQLDRM------------------HDRTIAEGA--DIGQYDASGRTVKPGTIATIRP 657 (862) T ss_pred cccchhhhcCcchhhcchhhhhHHHHHhh------------------hhhhhhhhc--chhhhccccccccccccCCCCC Confidence 00000 0000100000000000 000000000 0000000000 001111122 Q ss_pred ccCCC---cccccchhhHH-HHHHhhccch--hhhhh---hhccc---cc-----chhhhhhhhhhccccccccceeeec Q lcl|Aclame:pro 603 EVSAK---DILSFKYNSLV-EDETIYATEK--DIVLR---LLGKN---SL-----DHRETFGLIATHFDCHTVPKVEFYS 665 (945) Q Consensus 603 ~~~~~---~~~~~~~~~~~-~~~~~~~~~~--~~~~~---~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (945) -.+.| .++.|+--++- .-+.+ .-|. .-+-| --|+. .+ --|.|-|.=-.|.||-.-|.-+ T Consensus 658 ~~~~~~~~~~~~~~~~~~~~~g~~~-~ie~~~g~~r~~~~~~~~~~~~~~~~~yg~~~~~~g~d~~~~d~~~~~~~~--- 733 (862) T protein:vir:99 658 SVSGNHVGEQPTYQLPKMKMNGRIL-RIENPRGTVRSGISQTGDAWSVNMPHHYGFISGVKGYDGDELDCFVGPNTA--- 733 (862) T ss_pred cccccccccCCccccceeEecceeE-EEECCCCceecccCCCCcccccccccccceeeeccccCCceeeEEecCCCC--- Confidence 23333 34433322110 00000 0000 00000 00110 11 1134455556788888777654 Q ss_pred CccceeEEecccccc-----------chhhHHHHHHHHHHhhcccCCCc--------eeeeeeehhhccCcccchhhhh- Q lcl|Aclame:pro 666 DKDKRYVFANLSVCS-----------PINSVEKFTRLDELLSCTTKKPT--------KLEIVFDWLEFKNFKDIDLLKY- 725 (945) Q Consensus 666 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~- 725 (945) ..+-||.- -+|. -.++.|. --.-.|+|-+.-=. .++-.-.|+.+-+-+.--+-.| T Consensus 734 -~~~~~vv~--q~~~~g~fdehk~~~g~~~~~~--a~~~y~~~~~~g~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 808 (862) T protein:vir:99 734 -SKKVFVVN--QKDKEGAFDEHKCMLGFDDFEQ--AKEAYNSAFRPGWDGFDSMFELDWTAFDSWMTSGNVCTGPYTNEW 808 (862) T ss_pred -CcceEEEe--eeCCCCCcccceeeecCCCHHH--HHHHHHhhcccccccCCCccccCHHHHHHHHhCCCccccccchhh Confidence 12223221 1221 1222221 11234555554322 1222223444433211111111 Q ss_pred hhhhhhhhhcCCcchhhHHHHH--HHhhcc--hHHHHHHHHHHHHhhhhchhHH---H-HHhhhcc Q lcl|Aclame:pro 726 SQLGDSIKKKNYDSFDYLDDVE--KLLVAP--YEELENLVNLLKKKFFVEGELF---S-LVDSYKA 783 (945) Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~ 783 (945) ++-- -.+-.+-+.+| +.+|.+ ++|+ -.-+|++. .|.-- | +.-.-|. T Consensus 809 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~ 862 (862) T protein:vir:99 809 VENM-------QGSPQMKDESENGDVEMQNQSREET---QTRLKKQV--GGDPNDPASPILPEKKE 862 (862) T ss_pred hhhh-------ccchhhhhcccccceeccCCchHHH---HHHHHHhc--CCCCCCcccccccccCC Confidence 0000 00001112221 122322 3333 33344431 11100 0 0000111 No 127 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.70 E-value=1.5e-16 Score=107.33 Aligned_cols=443 Identities=12% Similarity=0.045 Sum_probs=224.7 Q ss_pred ccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcc Q lcl|Aclame:pro 18 QKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPE 97 (945) Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~ 97 (945) -.|..+..| +.=|+.+|- +++++.-.+.. ...+...-...... T Consensus 1 ~~r~~~~~~--------------------~~dr~i~~~---------~~~~~~~~~~~--------~~~y~aa~~~r~~~ 43 (505) T protein:vir:96 1 MKRAEKKPS--------------------LAQRMVNWA---------WYRYVEPQKNA--------ARAFEAARRDRLGK 43 (505) T ss_pred CCCCccccc--------------------hhhcccchh---------hhhhHHHHHHh--------hhhcccccCCCccc Confidence 223333222 222332221 11111000000 00000000001111 Q ss_pred cceeccccCCcccch------hhhhhHHhhhccHHHHHHHHHHHHhhcc-CceEEEEeccCcccccccchhhcccHHHHH Q lcl|Aclame:pro 98 SLMYLPSISDPDAFF------LINLFRKYRFNNDSKLIKVSEIPKKLTS-KELEIYKHIEDKHVNYYLKRIRDARNILEF 170 (945) Q Consensus 98 sl~~lps~s~p~~~~------~~~v~~~~Am~nsaV~aCV~iIA~~IAs-LP~~VyRrtedg~ee~~~r~~a~dhpL~~L 170 (945) .|...|+...++... +..-.+..+.+|+.+..+|+.+.+++-. ..+.+..+........ + +.-...+..+ T Consensus 44 ~w~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~~~~nvVG~~Gi~~~~~~~~~~~~~-~--~~~~~~ie~~ 120 (505) T protein:vir:96 44 AWLRRASRLSADEEIYADLASLVQRAREQSINNPYAKRFYQLLKNNVIGPKGMTFQSRVKRRNGKP-D--DRANTLIEGN 120 (505) T ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCCCcceeeecCCcccccc-c--HHHHHHHHHH Confidence 222222222233222 2344567778999999999977776654 5676654322111000 0 0111122222 Q ss_pred ---H-hccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCC-eEEEEEEcCCceeEE----------------EEc Q lcl|Aclame:pro 171 ---L-ERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQG-NLVAITPVDGTTIKP----------------ILS 229 (945) Q Consensus 171 ---L-~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G-~pveL~pLdPs~Vtv----------------~~d 229 (945) + ++||.+.++...|..+...++..++..|.+++...+...+ .+..|..|+|+++.. ..+ T Consensus 121 w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d 200 (505) T protein:vir:96 121 WQQWIKKGNCDVTGRYHFVTLLHLWMETLARDGEVLVREHRGYPNKWGYALQILECDRLDLNYNADLQNGNRIRMSIELD 200 (505) T ss_pred HHHhcCCcCcceeccCCHHHHHHHHHHHHhhCCceEEEEeecCCCCcceEEEEechhhcCCCCCcccCCcCeEEeceEEC Confidence 3 3567666655555566777888888999988776654433 466889999988842 122 Q ss_pred CCCceEEEEEEeeC-----------CceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHH---HHHHHHHHHHH Q lcl|Aclame:pro 230 EDTGIVVGYVQEVD-----------GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVIL---SDIFIDKGNLD 295 (945) Q Consensus 230 ~dG~~~~~Yv~~~d-----------G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~---~~~aaee~~a~ 295 (945) ..|....+++.... +.....+++++|+|+.....++- . -|+|.+..++..+. ....++...++ T Consensus 201 ~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~rvpa~~vlH~f~~~r~gQ-~--RGis~lapvl~~l~~l~~y~dael~~a~ 277 (505) T protein:vir:96 201 AWERPVAYHLLVNHPGDNSYCYHYAGQTYERVPADEIIHTFVPWRPHQ-N--RGIPWTHASMVELHHIGEYRKSEMIAAE 277 (505) T ss_pred CCCceEEEEEeecCCCccccccccccccccccCHhHhhhhhcccCCcc-c--cCcchHHHHHHHHHHHhHHHHHHHHHHH Confidence 33333322222111 12344578889999876554433 2 37777766665444 44444444444 Q ss_pred HHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHH Q lcl|Aclame:pro 296 YYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEF 375 (945) Q Consensus 296 ~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~ 375 (945) .- +.-.++++.+.+.......+ .. ......-..|.+..|..|.+++..+.+-....|.+..+. T Consensus 278 i~----A~~a~fi~~~~~~~~~~~~~-----~~--------~~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~ 340 (505) T protein:vir:96 278 LG----AKKVGFYEQDPEAYDQPPED-----DQ--------GEIVEEVEAGTYQLLPYGIRFKEHKIDHPHTNFGAFVKS 340 (505) T ss_pred Hh----hhheeeeecCCccCCCcccc-----cc--------CccccccCCceeeecCCCCeeeeeCCCCCCCCHHHHHHH Confidence 32 33456776543322111100 00 000111134566778999999988877667789999999 Q ss_pred HHHHHHHHhcCChhhc-ccccCCCcccHHHHHH-----------HHHHHHHHHHHH-HHHHHHHH-hh-ccccc-cceeE Q lcl|Aclame:pro 376 VARKICAVYQVSPQDV-GILEGSNKATAEVMAS-----------LTKAKGLEPLMA-TISKGFDE-VV-SEFRN-EKDIK 439 (945) Q Consensus 376 ~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~-----------~F~~~tL~Pll~-~IEqeLn~-kL-~~~~~-~~g~~ 439 (945) ....||+.+|||-+.+ |...+.|||.+-+... .+....++|+.+ +++.++-. .+ .+... ..... T Consensus 341 ~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~ 420 (505) T protein:vir:96 341 SLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDERDLYKLLQFFVVTELLERVAGNLISMSLLTQALPLNMVDIDRLSQ 420 (505) T ss_pred HHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCccchhhce Confidence 9999999999998866 6666778877554433 345566777555 34444433 22 12111 12234 Q ss_pred EEeechhh--cCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccc--ccc Q lcl|Aclame:pro 440 LWFKEDDL--EKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLA--QAM 515 (945) Q Consensus 440 f~fd~~~l--~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~--~~~ 515 (945) +.|..... .|+...+++...++++|..|.-|+-+..|.+|-+--++.. .+.......+..+...+ ... T Consensus 421 ~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a--------~e~~~~~~~Gl~~~~~~~~~~~ 492 (505) T protein:vir:96 421 YAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAAGDDPEDVFDEIA--------WEEQLMRDKGVNPTPPEQESKD 492 (505) T ss_pred eeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHH--------HHHHHHHHcCCCCCCCCCCCCC Confidence 66665554 4999999999999999999999998889988754222111 01111111111111000 000 Q ss_pred CCCCCCCCCCCCC Q lcl|Aclame:pro 516 ADQPSQQGGGVDE 528 (945) Q Consensus 516 ~d~~~~~~g~~dd 528 (945) +..+.++....|+ T Consensus 493 ~~~~~~~~~~~d~ 505 (505) T protein:vir:96 493 ATTDEEDDSASDD 505 (505) T ss_pred CCCCCCCCCCCCC Confidence 0000000001111 No 128 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=99.64 E-value=3.8e-15 Score=99.64 Aligned_cols=378 Identities=12% Similarity=0.022 Sum_probs=212.5 Q ss_pred cccccccCCCCCccccc--CcccceeccccCCcccch---------hhhhhHHhhhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 78 VPYNHQEPPFKFNLFEY--SPESLMYLPSISDPDAFF---------LINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIY 146 (945) Q Consensus 78 ~p~~~r~pp~~f~L~~~--s~~sl~~lps~s~p~~~~---------~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~Vy 146 (945) .-..-+.+|.+--..+. ..+.+....++.+|+... -..++++...+.+.|.+|++.+...|.+++|.|- T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~D~~lr~~gg~~~~~~~l~~~m~e~D~~v~s~l~~Rk~av~~~~w~V~ 80 (446) T protein:vir:98 1 MNMEVRNAPTPAIRRRTIYAMEHLGLATSYLSEDGGYKRAGKPTYQQLSAWDEAAQTEPIIAQGLDSIALSVLNKVGPYQ 80 (446) T ss_pred CcccccCCCchhhhhhhhhccccchhhcccCCcchHhhhcCCChHHHHHHHHHHHhcchHHHHHHHHHHHHhhcCCceec Confidence 11112222222111111 111222222232332211 1245555555689999999999999999999985 Q ss_pred EeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCC-C-e--------EEEE Q lcl|Aclame:pro 147 KHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQ-G-N--------LVAI 216 (945) Q Consensus 147 Rrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~-G-~--------pveL 216 (945) +. .++. ..-+...|+... . +++...+.+.+.+|-.+.+++.... | . ++.+ T Consensus 81 p~---------~~~~--a~~v~~~l~~~~--~-------~~~~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~ 140 (446) T protein:vir:98 81 HG---------DKRI--KKFIDDQLRNRA--K-------TWISHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNY 140 (446) T ss_pred Cc---------cHHH--HHHHHHHHhhcC--c-------hhHHHHHHHHHhhCceeeeEEEeecccccccchhhcccccc Confidence 31 1111 223556665321 1 1333446688889999998877532 1 1 1233 Q ss_pred EEcCCceeEEEEcCCCceEEEEE------------------------EeeCCceeeeecccceeeeeeccCCCCccCccc Q lcl|Aclame:pro 217 TPVDGTTIKPILSEDTGIVVGYV------------------------QEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYS 272 (945) Q Consensus 217 ~pLdPs~Vtv~~d~dG~~~~~Yv------------------------~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyG 272 (945) .|+++. ...+.++....... .....+....+|....+++++...++. +|| T Consensus 141 ~~~~~r---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~~---p~G 214 (446) T protein:vir:98 141 HPLQVM---LIANDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGNN---PWG 214 (446) T ss_pred ccccce---eeeccCCccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCCC---ccc Confidence 444332 22222222110000 001112234467777788887765543 588 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHH-HHHhcCc-ccCcc-- Q lcl|Aclame:pro 273 LPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQL-QAIMMGD-YTQVP-- 348 (945) Q Consensus 273 lSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~w-e~~~sG~-Nagkp-- 348 (945) .+.+..+......-....++-+.|..+.|+ |--+...+.+.....+...+.++..+ ...+++ ++....+ .++.+ T Consensus 215 ~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~-P~~vGkyp~ga~~~~~~~~~~~~~~~-~~~~~L~~av~~~~~da~~ii~ 292 (446) T protein:vir:98 215 TSCLTSVLDYSIFKRAFRDMMLIALDRYGT-PLIYVIVPPGNTGVVEEAPDGTEITT-TIAEQAEDALRRLSTDSGLVLT 292 (446) T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHhHcCC-ceeEEeecCCCCcccccchhHHHHHH-HHHHHHHHHHHhccccceeeee Confidence 899999999999889999999999988885 56666665443222111111111122 222223 3332222 22222 Q ss_pred -cccCCCceeeeccCChh-hHHHHHHHHHHHHHHHHHhcCChhhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 349 -ILSGGKFTWIDFKGKRR-DMQFKELAEFVARKICAVYQVSPQDVGILEG--SNKATAEVMASLTKAKGLEPLMATISKG 424 (945) Q Consensus 349 -~VL~~G~k~~pLs~sp~-D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~--gT~SN~Eqq~~~F~~~tL~Pll~~IEqe 424 (945) +++++|+++.-++.... ...|.+..++..++|+.+.....-.+|..++ |+++-.+. ......+.+.-.++++++. T Consensus 293 ~~~~P~g~eie~~ea~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~v-h~~V~~d~~~aDa~~i~~t 371 (446) T protein:vir:98 293 QLSKEQPVQVGALTTGNNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEI-QLELFDGKINSIFDTVIHA 371 (446) T ss_pred cccCCCCceEEeeccccCChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHH-HHHHHHHHHHHHHHHHHHH Confidence 13488888876654322 2358888899999999998877655664433 33333333 3344566788899999999 Q ss_pred HHHhhccccc-----cce-------eEEEeechhhcCHHHHHHHHHHHHhCCCcCH---HHHHHHHhCCCCCCccc Q lcl|Aclame:pro 425 FDEVVSEFRN-----EKD-------IKLWFKEDDLEKERDWWNIIQGQLNTGFRSI---NEARMEKGLEPVPWGDV 485 (945) Q Consensus 425 Ln~kL~~~~~-----~~g-------~~f~fd~~~l~D~kerae~~~~~v~~GimT~---NEaRe~lGlpPveGGD~ 485 (945) +|+.|.+..- ... -++.|+.....|.+..+++++.+++.|..++ +.+|+.+|+|+-. .|. T Consensus 372 ln~~Li~~l~~lNf~~~~~~~~~~~~~~~~~~~e~eDl~~~a~~~~~L~~~G~~~p~~~~~ire~~giP~~~-~~~ 446 (446) T protein:vir:98 372 FTEQVIGNLIRLNFDPALYPLASNTGYITRLPGRATDLAALVEAIKQMHDMGFLVDGDKDHIRSITGLPDAI-SST 446 (446) T ss_pred HHHHHHHHHHHhCCCccccccccccccceeccCChhhHHHHHHHHHHHHhCCccccccHHHHHHHhCcCCCC-CCC Confidence 9976643321 000 1245666677788999999999999998764 4599999997542 222 No 129 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=99.62 E-value=3.4e-14 Score=94.43 Aligned_cols=419 Identities=11% Similarity=0.084 Sum_probs=206.2 Q ss_pred cccccCCCCCcccccCcccceecc----------ccCCccc----chhhhhhHHhhhccHHHHHHHHHHHHhhccCceEE Q lcl|Aclame:pro 80 YNHQEPPFKFNLFEYSPESLMYLP----------SISDPDA----FFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEI 145 (945) Q Consensus 80 ~~~r~pp~~f~L~~~s~~sl~~lp----------s~s~p~~----~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~V 145 (945) .+..+...+ .-.|.-+..+. .+..+.. .-...+++... ..+.|.+|++.+...|.+++|.| T Consensus 1 ~~~~~~~~~----gl~p~rl~~i~~~~~~~~~~~~~~~~~~~Lr~~~~~~ly~~m~-~D~hi~s~l~~Rk~av~~~~w~v 75 (488) T protein:vir:95 1 MADITETQE----SLPPFRMGEVGSLGLKVKNGRIYEEPRQALRFPESIKTFQLMM-RDPAVAASVNIIKMFVRKVNWRF 75 (488) T ss_pred CCCccccCC----CCCHHHHHHHHHHhhccccchhhccchhhhcccchHHHHHHHh-hChHHHHHHHHHHHHHhcCCceE Confidence 111110000 00111000000 0000100 01223555543 57899999999999999999999 Q ss_pred EEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC-------------CCe Q lcl|Aclame:pro 146 YKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE-------------QGN 212 (945) Q Consensus 146 yRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~-------------~G~ 212 (945) .+......+. +.......+...++.. .. .|+.++..|+ +...+|-+..+++... +|. T Consensus 76 ~p~~~~~~d~---~~~~~a~~v~~~l~~~--~~----~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~ 145 (488) T protein:vir:95 76 VPPKGKEQDP---KMLERADFFNSLMDDM--EH----DWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGL 145 (488) T ss_pred ecCCCCchhH---HHHHHHHHHHHHHhcc--Cc----cHHHHHHHHH-HhhcccceeeeeeeeccccccccccccccCCe Confidence 7543222111 1111122233334321 11 1455666665 5678899888887753 232 Q ss_pred --EEEEEEcCCcee-EEEEcCCCceEEEEEEeeCC-------------ceeeeecccceeeeeeccCCCCccCcccccHH Q lcl|Aclame:pro 213 --LVAITPVDGTTI-KPILSEDTGIVVGYVQEVDG-------------AIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPI 276 (945) Q Consensus 213 --pveL~pLdPs~V-tv~~d~dG~~~~~Yv~~~dG-------------~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI 276 (945) +..|.+.++... ....+.+++......+...+ .....+++...++|++...++. ++|.+.+ T Consensus 146 ~~~~~i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~~~g~---p~g~gLl 222 (488) T protein:vir:95 146 IGWAKLPIRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDDEYGN---PEGRSPL 222 (488) T ss_pred eeeeeeeecCcccccceeeccCCCceeecccccccccccccccccccccccccccccceEEEeecCCCCc---cchhhHH Confidence 456666666432 23344454443322221111 1123355566666666554433 5788888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHh----cCcccCcccccC Q lcl|Aclame:pro 277 EILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIM----MGDYTQVPILSG 352 (945) Q Consensus 277 ~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~----sG~Nagkp~VL~ 352 (945) ..+......-....++-..|..+.|. |--+...+.+ ..+..++++.+.+.+...+.. .+..+| ++++ T Consensus 223 r~~~w~~~fK~~~~~~w~~f~Er~g~-g~p~~~~p~~------~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag--~iiP 293 (488) T protein:vir:95 223 LNAYVPWKYKVQIEEYEAVGVSRDLV-GMPKIGLPPD------YLDENAEPEKKAFVQYCKTVVNDMIANDRAG--LIWP 293 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cceeEeeccC------CCCCcccHHHHHHHHHHHHHHHHhhccchhh--eeec Confidence 88888887777777777777666543 2222222211 122334455555444444332 222333 4556 Q ss_pred CCceee---------eccCC-hhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 353 GKFTWI---------DFKGK-RRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATIS 422 (945) Q Consensus 353 ~G~k~~---------pLs~s-p~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IE 422 (945) .|++.. -++.. ..-..|.+..++..++|+.+.--.---.+...+|+++..+ .........+.-.+++++ T Consensus 294 ~g~~~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~iLGqtLT~~~~~~Gs~Al~~-vh~ev~~~i~~aDa~~i~ 372 (488) T protein:vir:95 294 RYIDPDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAFMSDVLAMGQSKYGSFSLAD-SKTSLLAMSVDILLKQIK 372 (488) T ss_pred cccccccchhhhhhhccccccCCchhHHHHHHHHHHHHHHHHhccccccccCcchhhhHHH-HHHHHHHHHHHHHHHHHH Confidence 665422 12221 2223466777888888888763322111222223343322 344455677888999999 Q ss_pred HHHHHhhcccc-----cc-c-eeEEEeechhhcCHHHHHHHHHHHHhCCCcCH-----HHHHHHHhCCCCCCcccccccc Q lcl|Aclame:pro 423 KGFDEVVSEFR-----NE-K-DIKLWFKEDDLEKERDWWNIIQGQLNTGFRSI-----NEARMEKGLEPVPWGDVPFSGL 490 (945) Q Consensus 423 qeLn~kL~~~~-----~~-~-g~~f~fd~~~l~D~kerae~~~~~v~~GimT~-----NEaRe~lGlpPveGGD~~l~~~ 490 (945) +.+|+.|++.. +. . .-+|.|+.....|.++++++++++++.|..-+ +.+|+.+|+|+-+++.....+. T Consensus 373 ~tln~~li~~l~~~Nfg~~~~~P~~~~~~~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~gip~~~~~e~~~~~~ 452 (488) T protein:vir:95 373 NVINRDLVAQTYALNMWDDEEHVQITYDDIETPDLEAIGSYIQKTVAVGALEVDKELSNKLREHIGLPPADESQPVSEKL 452 (488) T ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEecCcChhhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCccccccC Confidence 99998665432 11 1 23688888888899999999999999998765 5699999999765544322211 Q ss_pred ccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHhh Q lcl|Aclame:pro 491 RNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAGLEVLRNLFKS 550 (945) Q Consensus 491 n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k~ 550 (945) ++.... .+... ... .++.....+.+... +.....+ + T Consensus 453 ---~~~~~~-----~~~~~------~~~----~~~~~~~~~~~~~~--~~a~~~~----~ 488 (488) T protein:vir:95 453 ---SPNSQS-----RSGDG------YKT----AGEGTAKTPSAKDP--STANKAN----K 488 (488) T ss_pred ---CCCCCC-----CCCcc------cCC----CcccCCcccccccc--hhhhhcc----C Confidence 111000 00000 000 00000000000000 0000000 0 No 130 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.61 E-value=1.8e-15 Score=101.46 Aligned_cols=447 Identities=10% Similarity=-0.031 Sum_probs=215.1 Q ss_pred cCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceec----cccCCcccch- Q lcl|Aclame:pro 38 KDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYL----PSISDPDAFF- 112 (945) Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~l----ps~s~p~~~~- 112 (945) -+-|++.-++--+++ +............+..-..+ |...+++... T Consensus 1 ~~~p~~~~~~~~~~~------------------------------~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~ 50 (533) T protein:vir:34 1 MKTPTIPTLLGPDGM------------------------------TSLREYAGYHGGGSGFGGQLRSWNPPSESVDAALL 50 (533) T ss_pred CCCchhhhhhccccc------------------------------chHHHHHhhhhccCCCCCcccccccCCCCHHHHHH Confidence 111111111000000 00000000111111100111 2222222211 Q ss_pred -----hhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCccccc-ccchhhcccHHHHHH----hccCc--cCCh Q lcl|Aclame:pro 113 -----LINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNY-YLKRIRDARNILEFL----ERPDP--YFSE 180 (945) Q Consensus 113 -----~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~-~~r~~a~dhpL~~LL----~rPNp--~mT~ 180 (945) +..-.+..+.+|+.+..||+.+...+-.-.|.+..+-....... ......-...+..++ +.|+. +.++ T Consensus 51 ~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g 130 (533) T protein:vir:34 51 PNFTRGNARADDLVRNNGYAANAIQLHQDHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVER 130 (533) T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceecccc Confidence 22344566789999999999888888666776654311000000 000011112233333 24543 3343 Q ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEecCC-C--eEEEEEEcCCceeEE--------------EEcCCCceEEEEEEe-e Q lcl|Aclame:pro 181 VNSWEYLLGMVLDDILTIDRGAIVKIRDEQ-G--NLVAITPVDGTTIKP--------------ILSEDTGIVVGYVQE-V 242 (945) Q Consensus 181 ~eFwetli~~Lv~dlLl~Gna~i~iird~~-G--~pveL~pLdPs~Vtv--------------~~d~dG~~~~~Yv~~-~ 242 (945) ...|..+...++..++..|.+++.+..... | .++.|..|+|+++.. ..+..|... .|... . T Consensus 131 ~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~-aY~i~~~ 209 (533) T protein:vir:34 131 KRTFTMMIREGVAMHAFNGELFVQATWDTSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAAL-GYYVSED 209 (533) T ss_pred ccCHHHHHHHHHHHHHhCCceEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeE-EEEEeec Confidence 333445667778888899999888765543 2 256888899988742 223333322 33321 1 Q ss_pred --CCc---------eeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHH---HHHHHHHHHHHHhCCCCceEEE Q lcl|Aclame:pro 243 --DGA---------IVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSD---IFIDKGNLDYYRKGGSIPEGIL 308 (945) Q Consensus 243 --dG~---------~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~---~aaee~~a~~F~nnGa~PsGIL 308 (945) .|. ....+++.+|||+.....++- . -|+|.+..++..+... ..++...++. .+.-.+++ T Consensus 210 ~~~~~~~~~~~~~~~~~~v~a~~VlH~f~~~r~gQ-~--RGis~lapvl~~l~~l~~y~dael~~a~i----~A~~a~fi 282 (533) T protein:vir:34 210 GYPGWMPQKWTWIPRELPGGRASFIHVFEPVEDGQ-T--RGANVFYSVMEQMKMLDTLQNTQLQSAIV----KAMYAATI 282 (533) T ss_pred CCCCccccccceeeeeeccChhHeeeeccccCCCc-c--cCCchHHHHHHHHHHHHHHHHHHHHHHHH----hhhheeee Confidence 111 122355678999876554443 2 4777777766655443 3344333332 23445666 Q ss_pred Eecccccccccc-chhccHHHHHHHHH---HHHHHhcCc----ccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 AIEPPSYKEGDI-YPQLSREQLESIQR---QLQAIMMGD----YTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKI 380 (945) Q Consensus 309 s~k~g~~~~~k~-~~~LS~Eq~erlKe---~we~~~sG~----Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeI 380 (945) +.+.+....... .+....++...+.. .-.....+. ..|.+..|..|.+++..+.+-....|.+..+.....| T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~i 362 (533) T protein:vir:34 283 ESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAPVRLGGAKVPHLMPGDSLNLQTAQDTDNGYSVFEQSLLRYI 362 (533) T ss_pred ecCCCcccccccccCCCcccccccccccchhhhhccCcceeeccCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHH Confidence 654332111100 00011111111111 111111111 2455667889999888887766778899999999999 Q ss_pred HHHhcCChhhc-ccccCCCcccHHHHH-----------HHHHHHHHHHHHHH-HHHHHHH-hhc-ccc------c--cce Q lcl|Aclame:pro 381 CAVYQVSPQDV-GILEGSNKATAEVMA-----------SLTKAKGLEPLMAT-ISKGFDE-VVS-EFR------N--EKD 437 (945) Q Consensus 381 A~aFGVPP~lL-G~~e~gT~SN~Eqq~-----------~~F~~~tL~Pll~~-IEqeLn~-kL~-~~~------~--~~g 437 (945) |+.+|||-+.| |...++|||.+.+.. ..+....++|+.+. +++++.. .+. +.. . ... T Consensus 363 AaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~ 442 (533) T protein:vir:34 363 AAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMGRRKFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAW 442 (533) T ss_pred HhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCccCCCchhhHHhh Confidence 99999998866 666677888764433 33444555665553 4444433 221 110 0 111 Q ss_pred eEEEeechhh--cCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCccccc-- Q lcl|Aclame:pro 438 IKLWFKEDDL--EKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQ-- 513 (945) Q Consensus 438 ~~f~fd~~~l--~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~-- 513 (945) ..+.|..... .|+...+++...++++|..|.-|+-+..|.+|-+--++.. .+.......+...+..+. T Consensus 443 ~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~ev~~q~a--------~e~~~~~~~gl~~~~~~~~~ 514 (533) T protein:vir:34 443 GNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIFAQQV--------RETMERRAAGLKPPAWAAAA 514 (533) T ss_pred hceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHH--------HHHHHHHhcCCCCCCCCCcC Confidence 2455555444 4899999999999999999999999999998754322211 011111111111111110 Q ss_pred --ccCCCCCCCCCCCCCCcc Q lcl|Aclame:pro 514 --AMADQPSQQGGGVDENSS 531 (945) Q Consensus 514 --~~~d~~~~~~g~~dd~e~ 531 (945) ++..++. +..+++...+ T Consensus 515 ~~s~~~~~~-~~~~~~~~~~ 533 (533) T protein:vir:34 515 FESGLRQST-EEEKSDSRAA 533 (533) T ss_pred ccCCCCCCC-CCCcccCCCC Confidence 0101100 0111111111 No 131 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=99.58 E-value=2.3e-14 Score=95.36 Aligned_cols=334 Identities=12% Similarity=-0.029 Sum_probs=177.1 Q ss_pred EEEEEecC-CC--eEEEEEEcCCceeE-EEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHH Q lcl|Aclame:pro 202 AIVKIRDE-QG--NLVAITPVDGTTIK-PILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIE 277 (945) Q Consensus 202 ~i~iird~-~G--~pveL~pLdPs~Vt-v~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~ 277 (945) ..+++... .| .|..|.+.+|.++. ...+++++..........|.....+++...|+|++...++. ++|.+.+. T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~g~~~~~lp~~kfi~~~~~~~~g~---p~G~gLlr 77 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGAN---WLGQSLLR 77 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEEecCCCCCCcceeccCCEEEEEeCCCCCC---ccchhhHH Confidence 44444443 34 36678889998664 44566665432222223444445677777787776655443 57889999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccc---cccchhccHHHHHHHHHHHHHHhcCcccCcccccCCC Q lcl|Aclame:pro 278 ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKE---GDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGK 354 (945) Q Consensus 278 aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~---~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G 354 (945) .+......-....++-+.|..+.|+. --+...+.+.... .+.....+.+.++.+.........|.+++ ++++.| T Consensus 78 ~~~w~~~fK~~~~~~w~~f~Er~g~g-~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~a~--~iip~g 154 (355) T protein:vir:78 78 QAYKNWLLKDRFLRIQALVGERNGLG-VPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAG--GYIPHG 154 (355) T ss_pred HHHHHHHHHHhhHHHHHHHHHHcCCC-ceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCccee--EeecCC Confidence 99998888888888888888776532 2233333221111 01112234455555555555555554443 457888 Q ss_pred ceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhccccc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 355 FTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILE-GSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR 433 (945) Q Consensus 355 ~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e-~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~~ 433 (945) +++.-+.......++.+..++..++|+.+..-.---.+..+ .++++-.+. ........+.-.++.+++.+|+.|++.. T Consensus 155 ~~ie~~ea~g~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~~gGS~Alg~v-h~~v~~~~~~aD~~~i~~~ln~~li~~l 233 (355) T protein:vir:78 155 ANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDT-FASFFTGSLNAVMKHIADVTQQHVVEDL 233 (355) T ss_pred ceEEEeecCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 88776655555566778889999999988754322221111 233333333 4455677888899999999997664431 Q ss_pred -----cc-c-eeEEEeechhhcCHHHHHHHHHHHHhCCCcCHH-----HHHHHHhCCCCCCccccccccccccccccchh Q lcl|Aclame:pro 434 -----NE-K-DIKLWFKEDDLEKERDWWNIIQGQLNTGFRSIN-----EARMEKGLEPVPWGDVPFSGLRNWKPEDEQAK 501 (945) Q Consensus 434 -----~~-~-g~~f~fd~~~l~D~kerae~~~~~v~~GimT~N-----EaRe~lGlpPveGGD~~l~~~n~~~ped~~a~ 501 (945) +. . .-+|.|+... .+.++.++.++.+++.|+.-++ .+|+.+|+|+-+.++....+.....+.. T Consensus 234 ~~lN~~~~~~~P~~~~~~~~-~~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~gip~p~~~~~~~~~~~~~~~~~---- 308 (355) T protein:vir:78 234 VDQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGR---- 308 (355) T ss_pred HHhcCCCCCCCCEEEecCcC-hhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCCcccCCcccccccc---- Confidence 11 1 1256676544 3556789999999999997664 4799999986554443322211100000 Q ss_pred hccCCCCcccccccCCCCCCCCCCCCCCc-cccchhHHHHHHHHHHHHhhhhhhhh Q lcl|Aclame:pro 502 AQQGAMPPQLAQAMADQPSQQGGGVDENS-SVPSEQKNAGLEVLRNLFKSLDANAS 556 (945) Q Consensus 502 ~~~~a~~~~~~~~~~d~~~~~~g~~dd~e-~~~se~k~a~~~~lr~~~k~l~a~~~ 556 (945) +..+.+........+.+...+ ..+.+...+..+.+. -+...-+.+. T Consensus 309 --------~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~ 355 (355) T protein:vir:78 309 --------RRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRH-PAHRRCAPDG 355 (355) T ss_pred --------ccccccCCccccccccccCCCCCChhhhHHHHHHhhc-cccCCCCCCC Confidence 000000000000000111111 111111111111111 1111111111 No 132 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.57 E-value=5.9e-15 Score=98.59 Aligned_cols=453 Identities=10% Similarity=-0.029 Sum_probs=211.5 Q ss_pred eeeccccccccccccCCC-----CCcccccCccc---ce-eccccCCcccch------hhhhhHHhhhccHHHHHHHHHH Q lcl|Aclame:pro 70 VLKKEKIIVPYNHQEPPF-----KFNLFEYSPES---LM-YLPSISDPDAFF------LINLFRKYRFNNDSKLIKVSEI 134 (945) Q Consensus 70 l~kK~K~i~p~~~r~pp~-----~f~L~~~s~~s---l~-~lps~s~p~~~~------~~~v~~~~Am~nsaV~aCV~iI 134 (945) +.+...+......+-.+. ...-+++.+.. +. ..|....++... +..-.+....+|+.+..+|+.+ T Consensus 1 m~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~a~~av~~~ 80 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADNDGFTNGAVGYQ 80 (553) T ss_pred CcchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH Confidence 212111111100000000 00111221110 11 012222222221 2334566678999999999988 Q ss_pred HHhhccCceEEEEeccCcccccccc--hhhcccHHHHHH----hccCc--cCChHHHHHHHHHHHHHHHhccCCeEEEEE Q lcl|Aclame:pro 135 PKKLTSKELEIYKHIEDKHVNYYLK--RIRDARNILEFL----ERPDP--YFSEVNSWEYLLGMVLDDILTIDRGAIVKI 206 (945) Q Consensus 135 A~~IAsLP~~VyRrtedg~ee~~~r--~~a~dhpL~~LL----~rPNp--~mT~~eFwetli~~Lv~dlLl~Gna~i~ii 206 (945) ..++-.-.|.+..+-........+. ...-...+.+++ +.||. +.++...|..+...++..++..|.+++... T Consensus 81 ~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~ 160 (553) T protein:vir:63 81 RDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLATAE 160 (553) T ss_pred HHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCCceEEEee Confidence 8877666777653311100000000 011112233333 24443 233333344566667788888999888765 Q ss_pred ecCC-C--eEEEEEEcCCceeEEE--------------EcCCCceEEEEEEeeC-Cc---------------eeeeeccc Q lcl|Aclame:pro 207 RDEQ-G--NLVAITPVDGTTIKPI--------------LSEDTGIVVGYVQEVD-GA---------------IVAHFDKR 253 (945) Q Consensus 207 rd~~-G--~pveL~pLdPs~Vtv~--------------~d~dG~~~~~Yv~~~d-G~---------------~~~~~~a~ 253 (945) .... | .+..|..|+|+++..- .|..|....+++.... |. ....+++. T Consensus 161 ~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r~~~~~~v~a~ 240 (553) T protein:vir:63 161 WDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKFVQQSKPWGRR 240 (553) T ss_pred eccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceeeeccccccChh Confidence 5432 3 2467889999888432 2233332222222111 10 12246788 Q ss_pred ceeeeeeccCCCCccCcccccHHHHHHHHHHH---HHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccH-H-H Q lcl|Aclame:pro 254 DVVLFRQNLTPDVYMYGYSLPPIEILYKVILS---DIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSR-E-Q 328 (945) Q Consensus 254 DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~---~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~-E-q 328 (945) +|||+.....++- . -|+|.+..++..+.. ...++...++. .+.-.++++.+.+...........++ . . T Consensus 241 ~vlH~f~~~r~gQ-~--RGis~lapvl~~l~~l~~y~daeL~~a~i----~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~ 313 (553) T protein:vir:63 241 QVIHILEPREPDQ-S--RGIADIVSGLKDMRMAKRFKEMSLQNAVI----NASYAAAIESELPPEFIHSQMSGGSPNADM 313 (553) T ss_pred HheecccccCCCc-c--cCCchHHHHHHHHHHHhHHHHHHHHHHHH----hhhheeeeecCCChhhhhhhcccccccccc Confidence 9999876655443 2 477777666655444 44444444443 23345666654321100000000000 0 0 Q ss_pred H---HHHHHHHHHHhcC-----cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCc Q lcl|Aclame:pro 329 L---ESIQRQLQAIMMG-----DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNK 399 (945) Q Consensus 329 ~---erlKe~we~~~sG-----~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~ 399 (945) . ....+.....+.| -..|.+..|..|.+++..+.+-...+|.+..+.....||+.+|||-+.| |..++.|| T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s~~nY 393 (553) T protein:vir:63 314 VGIFGKYMDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANY 393 (553) T ss_pred cccccccccccccccccccceeecCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccH Confidence 0 0000011111111 1245667788898888887775667889999999999999999998766 66677788 Q ss_pred ccHHHHHH-----------HHHHHHHHHHHHH-HHHHHHH-hh-ccccc-----------cceeEEEeechhh--cCHHH Q lcl|Aclame:pro 400 ATAEVMAS-----------LTKAKGLEPLMAT-ISKGFDE-VV-SEFRN-----------EKDIKLWFKEDDL--EKERD 452 (945) Q Consensus 400 SN~Eqq~~-----------~F~~~tL~Pll~~-IEqeLn~-kL-~~~~~-----------~~g~~f~fd~~~l--~D~ke 452 (945) |.+.+... .|....++|+.++ ++.++-. .+ .+... .....+.|..... .|+.. T Consensus 394 SS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~K 473 (553) T protein:vir:63 394 SSIQAGIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLK 473 (553) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCccccChHH Confidence 87644433 3445556665443 4444432 22 11110 0112345555544 49999 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCccccc-ccCC-CCCCCCCCCCCCc Q lcl|Aclame:pro 453 WWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQ-AMAD-QPSQQGGGVDENS 530 (945) Q Consensus 453 rae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~-~~~d-~~~~~~g~~dd~e 530 (945) .+++...++++|..|.-|+-++.|.+|-+--++..- +.......+...+..+. ..+. ...+++...+... T Consensus 474 e~~A~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~--------e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (553) T protein:vir:63 474 ETQAAVMRIDAGLSTYEREIARLGGDFRKSFAQRAR--------EDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAA 545 (553) T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHH--------HHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCC Confidence 999999999999999999999999887532221110 00000011110000000 0000 0000000000000 Q ss_pred cccc-hhH Q lcl|Aclame:pro 531 SVPS-EQK 537 (945) Q Consensus 531 ~~~s-e~k 537 (945) .+++ +++ T Consensus 546 ~~~~~~~e 553 (553) T protein:vir:63 546 AQTSQQGE 553 (553) T ss_pred CCcccccC Confidence 0000 011 No 133 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.51 E-value=6.2e-14 Score=93.01 Aligned_cols=427 Identities=12% Similarity=0.037 Sum_probs=207.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCc--ccceeccccCCcccch------hhhhhHHhhhccHHHHHHHHH Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSP--ESLMYLPSISDPDAFF------LINLFRKYRFNNDSKLIKVSE 133 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~--~sl~~lps~s~p~~~~------~~~v~~~~Am~nsaV~aCV~i 133 (945) .-++.++- +-+..+...+....-++... ..+...+.++ ++... +..-.+..+.+|+.+..||+. T Consensus 1 m~~~~~~~-------~a~~~~~~~~~~~~~y~aa~~~~~~~~~~~~s-~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~ 72 (495) T protein:vir:10 1 MNMTPSGY-------QSLASGLLVPVGASAYEGASGGHRWQDIGDYG-PDTAVASGIQTLRARSHHNVRNNPWATNAVAT 72 (495) T ss_pred CCcccccc-------cccchhhhhHHHhhhhhccccCcccCCCCCCC-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH Confidence 11111110 00000000000000111111 1122222222 22211 233456677899999999999 Q ss_pred HHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh--ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec--C Q lcl|Aclame:pro 134 IPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE--RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD--E 209 (945) Q Consensus 134 IA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~--rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird--~ 209 (945) +.+++-.-.|....+..+. .-...+..+++ .-|++-++...|..+...++..++..|.+++.+... . T Consensus 73 ~~~~vVG~Gi~p~~~~~~~---------~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~ 143 (495) T protein:vir:10 73 WVAAAVGNGLTPRWRMKEQ---------ELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLS 143 (495) T ss_pred HHHhhcCCCcccccCCchH---------HHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccC Confidence 8888855566543332221 11222333432 113333333334446666788888889988766543 2 Q ss_pred CC--eEEEEEEcCCceeEE-E----------------EcCCCceEEEEE-EeeC-C--------ceeeeecccceeeeee Q lcl|Aclame:pro 210 QG--NLVAITPVDGTTIKP-I----------------LSEDTGIVVGYV-QEVD-G--------AIVAHFDKRDVVLFRQ 260 (945) Q Consensus 210 ~G--~pveL~pLdPs~Vtv-~----------------~d~dG~~~~~Yv-~~~d-G--------~~~~~~~a~DVIh~r~ 260 (945) .| .+..|..|+|+++.. . .+..|. +..|. .... | .....+++++|+|+. T Consensus 144 ~g~~~~~~lqliepd~l~~~~~~~~~~~g~~i~~GIe~d~~Gr-~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f- 221 (495) T protein:vir:10 144 EGLSVPLQLQIIEPDMLASDIPDETLPSGGYVKGGIRFSNGGK-RKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVT- 221 (495) T ss_pred CCCccceEEEEechhhcCCCCCCCCCCCCCEEEeceEECCCCc-eEEEEEeecCCCcccccccccceeeechhheEecc- Confidence 33 467899999998842 1 112222 22232 1111 1 124558889999984 Q ss_pred ccCCCCccCcccccHHHHHH--HHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHH Q lcl|Aclame:pro 261 NLTPDVYMYGYSLPPIEILY--KVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQA 338 (945) Q Consensus 261 n~~~d~~~~GyGlSPI~aa~--~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~ 338 (945) ...+ +..+ |+|.+..+. +.++....++...++. .+...++++.+.+....+...+. +..+. -.. T Consensus 222 ~~r~-gQ~R--Gis~la~i~~l~~l~~y~dael~~a~i----~A~~~~fi~~~~~~~~~~~~~~~---~~~~~----~~~ 287 (495) T protein:vir:10 222 VLTV-RSDA--GAPWFQLLLRLNELDQYEDAELVRKKT----AALFAAFIQEATADSTGGPTIGQ---PKRSK----GGK 287 (495) T ss_pred ccCC-Cccc--CcchhHHHHHHHHhhHHHHHHHHHHHH----hhhheeeeecCCCccccccccCc---ccccc----Ccc Confidence 3333 2333 665443322 2333334444444443 23445676654332221111000 00000 000 Q ss_pred HhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHH-------- Q lcl|Aclame:pro 339 IMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLT-------- 409 (945) Q Consensus 339 ~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F-------- 409 (945) ...+-..|.+..|..|.+++..+.+..-..|.+..+.....||+.+|||-+.+ |...+.|||.+.+....+ T Consensus 288 ~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q 367 (495) T protein:vir:10 288 RITGLNPGTLQYLQPGQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQ 367 (495) T ss_pred cceecCCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHH Confidence 00111345667789999998888765667888999999999999999999877 677777888765544333 Q ss_pred ----HHHHHHHHHHH-HHHHHHH-hh-cccc-c--cceeEEEeechhh--cCHHHHHHHHHHHHhCCCcCHHHHHHHHhC Q lcl|Aclame:pro 410 ----KAKGLEPLMAT-ISKGFDE-VV-SEFR-N--EKDIKLWFKEDDL--EKERDWWNIIQGQLNTGFRSINEARMEKGL 477 (945) Q Consensus 410 ----~~~tL~Pll~~-IEqeLn~-kL-~~~~-~--~~g~~f~fd~~~l--~D~kerae~~~~~v~~GimT~NEaRe~lGl 477 (945) +...++|+.+. ++.++-. .+ +|.. . .....++|..... .|+...+++...++++|..|.-++-+..|. T Consensus 368 ~~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~G~ 447 (495) T protein:vir:10 368 HHMIIHQFCRPVGRWFMDFAVASGAVVIPDYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAERGY 447 (495) T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCC Confidence 33344454333 4434332 22 1211 1 0113445554443 499999999999999999999999999999 Q ss_pred CCCCCccccccccccccccccchhhccCCC----CcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 478 EPVPWGDVPFSGLRNWKPEDEQAKAQQGAM----PPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 478 pPveGGD~~l~~~n~~~ped~~a~~~~~a~----~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +|-+--++.. .+.......+.. +......++.+.+. .+..++++ T Consensus 448 D~~~v~~q~a--------~e~~~~~~~Gl~~~~~p~~~~~~~~~~~~~-~~~~~~~e 495 (495) T protein:vir:10 448 DMEELFDMIS--------DANQLIDEYDLRLDSDPRYVNGSGAEQKSV-MEAALNNE 495 (495) T ss_pred CHHHHHHHHH--------HHHHHHHHcCCCCCCCCCcCCCccCCCCCC-CCCCCCCC Confidence 8753222110 011111111111 11110111110000 00111111 No 134 >protein:vir:99088 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655692;genbank:gi:109521770;genbank:GeneID:4157810 Probab=99.49 E-value=1.3e-13 Score=91.30 Aligned_cols=521 Identities=12% Similarity=0.073 Sum_probs=250.8 Q ss_pred eeeecceeeecccccccccccc-C-CCCCcccccCccc---ceecc--ccCCcccchhhhhhHHhhhccHHHHHHHHHHH Q lcl|Aclame:pro 63 IIFRKNQVLKKEKIIVPYNHQE-P-PFKFNLFEYSPES---LMYLP--SISDPDAFFLINLFRKYRFNNDSKLIKVSEIP 135 (945) Q Consensus 63 ~~~k~n~l~kK~K~i~p~~~r~-p-p~~f~L~~~s~~s---l~~lp--s~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA 135 (945) .--..=|+.++||..-|...+- . .....+.+..... ++.-+ .|. ..+|. .+.-.+-++..|..|+ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ-~eAW~-------~~d~v~Elry~vgW~~ 72 (629) T protein:vir:99 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQ-DDAWK-------AYDAVGELRYYVGWRS 72 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhcccccchhhhhhcCCCchhhhh-HHHHH-------HHHhhhhHHHHhhhhh Confidence 1223346778888743332211 0 0011111111111 11100 111 11221 1223567788899999 Q ss_pred HhhccCceEEEEeccCccccccc-chhhccc-HHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeE Q lcl|Aclame:pro 136 KKLTSKELEIYKHIEDKHVNYYL-KRIRDAR-NILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNL 213 (945) Q Consensus 136 ~~IAsLP~~VyRrtedg~ee~~~-r~~a~dh-pL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~p 213 (945) ++++.+.+.+-+.+.++..+.+- .+....+ .+.++..++-....+ ...+++.+..++-+.|..|+++..-..|.. T Consensus 73 ~s~Sr~rL~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lg---qa~lLkr~~~~ltV~GE~wiv~~~~~~~~~ 149 (629) T protein:vir:99 73 SSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALG---QAQLIKRVVEQLTVAGETWVAILFTDKSRL 149 (629) T ss_pred hhhceeeeEeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhh---HHHHHHHHHhheecccceEEEEeecCCCcc Confidence 99999999888888666543322 1111111 333444444332222 235788888898899998887754333332 Q ss_pred -------EEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHH Q lcl|Aclame:pro 214 -------VAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSD 286 (945) Q Consensus 214 -------veL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~ 286 (945) .+++.+-++.|. ...++. -+...+|..-......|++.-..+++|. ..-+--||+.+++..+... T Consensus 150 d~~~~~~~eW~~vt~~ei~---~~~~~~---~i~lP~g~~~e~~~~~d~l~RiW~P~Pr--r~~e~DSpvra~l~~l~Ei 221 (629) T protein:vir:99 150 DSNGNPVPEWLALTPEEVR---ASEKKT---IIELPTGDKHEFRDGLDGMFRVWNPRAR--RAREPDSPVRANLDSLKEI 221 (629) T ss_pred CCCCcchhhheeechHHhh---hccCce---eEEcCCCCccceeCCCceEEEeeCCCcc--cccCCcchhHHHHHHHHHH Confidence 234445555443 122222 2334556666666666665333333333 3346779999999888776 Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecccccccccc-------c-----hhccHHHHHHHHHHHH----HHhcC---cccCc Q lcl|Aclame:pro 287 IFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDI-------Y-----PQLSREQLESIQRQLQ----AIMMG---DYTQV 347 (945) Q Consensus 287 ~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~-------~-----~~LS~Eq~erlKe~we----~~~sG---~Nagk 347 (945) ..+.+...+-. ++..+-.|||..+.+...+... + .-...-+.+.|.+.+. ..+.. ..+-. T Consensus 222 ~~lt~~i~aaa-kSRL~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~v 300 (629) T protein:vir:99 222 VRTTKTIANAS-KSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALI 300 (629) T ss_pred HHhhhHHHHHH-HHHHhhCceeEeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCcccee Confidence 66666554433 3455566776665544332200 0 1111123344444443 33332 23456 Q ss_pred ccccC------CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 348 PILSG------GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKAKGLEPLMAT 420 (945) Q Consensus 348 p~VL~------~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~~tL~Pll~~ 420 (945) |+++. ++++...+.. ..+.--+.+|+..+..+|....|||..| |.+.++|.-+.-|....-++-.|.|.+.. T Consensus 301 Piia~~P~E~i~~i~hlkf~~-ei~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ 379 (629) T protein:vir:99 301 PMFAAAPGELIKNVTHLKFDN-QVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEM 379 (629) T ss_pred eeeEeechHHhcCeeEEeecC-chhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchhHHH Confidence 66653 3455555553 3444567899999999999999999866 55567777666666666778889999999 Q ss_pred HHHHHHHhhc-cc---cc--cceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccc-------- Q lcl|Aclame:pro 421 ISKGFDEVVS-EF---RN--EKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVP-------- 486 (945) Q Consensus 421 IEqeLn~kL~-~~---~~--~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~-------- 486 (945) |+++|++.++ +. ++ -..|-+.||...+...-++.+-...+.+.|.+|-...|+.+|+.--.|-|.. T Consensus 380 ic~AlT~~~Lrp~Le~eGiDp~kYvvW~DaS~Lt~dPd~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~ 459 (629) T protein:vir:99 380 LCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQW 459 (629) T ss_pred HHHHHHhhHHHHHHHHhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhcCccccccCCCchHHHHHH Confidence 9999986443 22 22 2347899999988754445555557889999999999999999754444310 Q ss_pred ---ccc--cccc----c----ccccchhhccCCCCccccccc----------CCCCCCCCCCCCCC-ccccchhHHHHHH Q lcl|Aclame:pro 487 ---FSG--LRNW----K----PEDEQAKAQQGAMPPQLAQAM----------ADQPSQQGGGVDEN-SSVPSEQKNAGLE 542 (945) Q Consensus 487 ---l~~--~n~~----~----ped~~a~~~~~a~~~~~~~~~----------~d~~~~~~g~~dd~-e~~~se~k~a~~~ 542 (945) .+. .... + ..+.....+..+.++...+.+ .+++.++...+++. .+.......+..+ T Consensus 460 a~d~V~~~P~Li~~~a~l~~~~a~~~~P~~~~~~pp~~e~~~~dE~sga~~~~ep~te~d~~~~~a~~aa~~~~~~a~V~ 539 (629) T protein:vir:99 460 ARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVE 539 (629) T ss_pred HHHhhhhCcchhhhhhhhhhhhcccccCccCCCCCccccCCCcccccCCCcCCCCCCCCCCcccccCCCCCCCcHHHHHH Confidence 000 0000 0 000000000000000000000 00000000000000 0001111112222 Q ss_pred HHH-HHHhhhhhhhh-H--HHHHhhccCCcc--ccc-----cchHHH----HHHH-----Hhhh------hHHHHHhh-- Q lcl|Aclame:pro 543 VLR-NLFKSLDANAS-E--NLKQVIELTNDD--NYL-----KEKELL----TRVL-----KSVG------LDSVSEFI-- 594 (945) Q Consensus 543 ~lr-~~~k~l~a~~~-~--~~~~~~dl~n~~--~~l-----~e~~~~----~~~~-----~~~~------~~~~~~~~-- 594 (945) .+- +-+. +.++.. + .-.++-+.+.-+ ..+ +|-++. -.++ .+.| +.+|..|| T Consensus 540 llv~RALe-lAGkR~r~r~~~ar~r~v~~he~h~~l~Pv~~~~i~rli~gwd~~ld~~~~~~Lg~d~~~lr~~v~a~v~~ 618 (629) T protein:vir:99 540 ALVFRALE-LAGKRSRTRSLPYELRQLSDRELVRRLEPVRREHVADLIRGWDSMLEERAVQALNMNIPGIRAAVKRAVYG 618 (629) T ss_pred HHHHHHHH-hcCCcCCChhhHHHHhcCchhhceeecCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH Confidence 111 0000 111111 0 011111111111 000 111222 2221 2222 22333333 Q ss_pred hhhhhcccccC Q lcl|Aclame:pro 595 ENNSQTDVEVS 605 (945) Q Consensus 595 ~~~~~~~~~~~ 605 (945) ++-+-++.+|+ T Consensus 619 ~lt~~~~~ev~ 629 (629) T protein:vir:99 619 ELTKTIDGEVS 629 (629) T ss_pred HhhhhhccccC Confidence 33334566666 No 135 >protein:vir:8654 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Probab=99.47 E-value=2e-13 Score=90.22 Aligned_cols=521 Identities=12% Similarity=0.068 Sum_probs=251.1 Q ss_pred eeeecceeeecccccccccccc-C-CCCCcccccCccc---ceecc--ccCCcccchhhhhhHHhhhccHHHHHHHHHHH Q lcl|Aclame:pro 63 IIFRKNQVLKKEKIIVPYNHQE-P-PFKFNLFEYSPES---LMYLP--SISDPDAFFLINLFRKYRFNNDSKLIKVSEIP 135 (945) Q Consensus 63 ~~~k~n~l~kK~K~i~p~~~r~-p-p~~f~L~~~s~~s---l~~lp--s~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA 135 (945) .--..=|+.++||..-|...+- . .....+.+..... ++.-+ .|. ..+|. .+.-.+-++..|..|+ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ-~eAW~-------~~d~v~Elry~vgW~~ 72 (629) T protein:vir:86 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQ-EDAWK-------AYDAVGELRYYVGWRS 72 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhccccccchhhhhcCCCchhhhh-HHHHH-------HHHhhhhHHHHhhhhh Confidence 1223346778888743332211 0 0011111111111 11100 111 11121 1223567788899999 Q ss_pred HhhccCceEEEEeccCccccccc-chhhccc-HHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeE Q lcl|Aclame:pro 136 KKLTSKELEIYKHIEDKHVNYYL-KRIRDAR-NILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNL 213 (945) Q Consensus 136 ~~IAsLP~~VyRrtedg~ee~~~-r~~a~dh-pL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~p 213 (945) ++++.+.+.+-+.+.++..+.+- .+....+ .+.++..++-....+ ...+++.+..++-+.|..|+++..-..|.. T Consensus 73 ~s~Sr~rL~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lg---qa~lLkr~~~~ltV~GE~wiv~~~~~~~~~ 149 (629) T protein:vir:86 73 SSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALG---QAQLIKRVVEQLTVAGETWVAILFTDKSRL 149 (629) T ss_pred hhhceeeeEeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhh---HHHHHHHHHhheecccceEEEEeecCCCcc Confidence 99999999888888666543321 1111111 333444444332222 235788888898899998887754333332 Q ss_pred -------EEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHH Q lcl|Aclame:pro 214 -------VAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSD 286 (945) Q Consensus 214 -------veL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~ 286 (945) .+++.+-++.|. ...++. -+...+|..-......+++.-..+++|. ..-+--||+.+++..+... T Consensus 150 d~~~~~~~eW~~vt~~ei~---~~~~~~---~i~lP~g~~~e~~~~~d~l~RiW~P~Pr--r~~e~DSpvra~l~~l~Ei 221 (629) T protein:vir:86 150 DSNGNPVPEWLALTPEEVR---ASEKKT---IIELPTGDKHEFRDGLDGMFRVWNPRAR--RAREPDSPVRANLDSLKEI 221 (629) T ss_pred CCCCcchhhheeechHHhh---hccCce---eeEcCCCCcceeeCCCceEEEeeCCCcc--cccCCcchhHHHHHHHHHH Confidence 234445555443 222222 2344556666666666666333334333 3346779999999888776 Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecccccccccc-------c-----hhccHHHHHHHHHHHH----HHhcC---cccCc Q lcl|Aclame:pro 287 IFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDI-------Y-----PQLSREQLESIQRQLQ----AIMMG---DYTQV 347 (945) Q Consensus 287 ~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~-------~-----~~LS~Eq~erlKe~we----~~~sG---~Nagk 347 (945) ..+.+...+-. ++..+-.|||..+.+...+... + .-...-+.+.|.+.+. ..+.. ..+-. T Consensus 222 ~~lt~~i~aaa-kSRL~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~v 300 (629) T protein:vir:86 222 VRTTKTIANAS-KSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALI 300 (629) T ss_pred HHhhhHHHHHH-HHHHhhCceeeeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCcccee Confidence 66666554433 3455556776665544332200 0 1111123344444443 33432 23456 Q ss_pred ccccC------CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 348 PILSG------GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKAKGLEPLMAT 420 (945) Q Consensus 348 p~VL~------~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~~tL~Pll~~ 420 (945) |+++. ++++...+.. ..+.--+.+|+..+..+|....|||..| |.+.++|.-+.-|....-++-.|.|.+.. T Consensus 301 Piia~~P~E~i~~i~hlkf~~-ei~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ 379 (629) T protein:vir:86 301 PMFAAAPGELIKNVTHLKFDN-QVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEM 379 (629) T ss_pred eeeEeechHHhcCeeEEeecC-chhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHH Confidence 66653 3455555553 3444567899999999999999999866 55567777666666666778889999999 Q ss_pred HHHHHHHhhc-cc---cc--cceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccc-------- Q lcl|Aclame:pro 421 ISKGFDEVVS-EF---RN--EKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVP-------- 486 (945) Q Consensus 421 IEqeLn~kL~-~~---~~--~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~-------- 486 (945) |+++|++.++ +. ++ -..|-+.||...+...-++.+-...+.+.|.+|-...|+.+|+.--.|-|.. T Consensus 380 ic~AlT~~~Lrp~Le~eGiDp~kYvvW~DaS~Lt~dPd~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~ 459 (629) T protein:vir:86 380 LCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQW 459 (629) T ss_pred HHHHHHhhHHHHHHHHhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCcCHHHHHHHhcCccccccCCCchHHHHHH Confidence 9999986443 22 22 2347899999988754445555557889999999999999999754444310 Q ss_pred ---ccc--cccc----c----ccccchhhccCCCCccccccc----------CCCCCCCCCCCCCCc-cccchhHHHHHH Q lcl|Aclame:pro 487 ---FSG--LRNW----K----PEDEQAKAQQGAMPPQLAQAM----------ADQPSQQGGGVDENS-SVPSEQKNAGLE 542 (945) Q Consensus 487 ---l~~--~n~~----~----ped~~a~~~~~a~~~~~~~~~----------~d~~~~~~g~~dd~e-~~~se~k~a~~~ 542 (945) .+. .... + ..+.....+..+.++...+.+ .+++.++...+++.. +.......+..+ T Consensus 460 a~d~V~~~P~Li~~~a~l~~~~a~~~~P~~~~~~pp~~e~~~~dE~sga~~~~ep~te~d~~~~~a~~aa~~~~~~a~V~ 539 (629) T protein:vir:86 460 ARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVE 539 (629) T ss_pred HHHhhhhCcchhhhhhhhhhhhcccccCccCCCCCccccCCCcccccCCCcCCCCCCCCCCcccccCCCCCCCcHHHHHH Confidence 000 0000 0 000000000000000000000 000000000000000 001111112222 Q ss_pred HHH-HHHhhhhhhhh-H--HHHHhhccCCcccc-------ccchHHH----HHHH-----Hhhh------hHHHHHhh-- Q lcl|Aclame:pro 543 VLR-NLFKSLDANAS-E--NLKQVIELTNDDNY-------LKEKELL----TRVL-----KSVG------LDSVSEFI-- 594 (945) Q Consensus 543 ~lr-~~~k~l~a~~~-~--~~~~~~dl~n~~~~-------l~e~~~~----~~~~-----~~~~------~~~~~~~~-- 594 (945) .+- +-+. +.++.. + .-.++-+.+.-+.- .+|-++. -.++ .+.| +.+|..|| T Consensus 540 llv~RALe-lAGkR~r~r~~~a~~r~v~~he~h~~l~Pv~~~~v~rli~gwd~~ld~~~~~~Lg~d~~~lr~~v~a~v~~ 618 (629) T protein:vir:86 540 ALVFRALE-LAGKRSRTRSLPYELRQLSDRELVRRLEPVRREHVADLIRGWDSMLEERAVQALNMNIPGIRAAVKRAVYG 618 (629) T ss_pred HHHHHHHH-hcCCcCCChhhHHHHhccChhhcceecCCCChHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH Confidence 111 0000 111111 0 01111112211100 1122222 2222 2222 22333333 Q ss_pred hhhhhcccccC Q lcl|Aclame:pro 595 ENNSQTDVEVS 605 (945) Q Consensus 595 ~~~~~~~~~~~ 605 (945) ++.+-++.+|+ T Consensus 619 ~lt~~v~~ev~ 629 (629) T protein:vir:86 619 ELTKTIDGEVS 629 (629) T ss_pred HhhcccccccC Confidence 33444566666 No 136 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=99.42 E-value=3.1e-13 Score=89.12 Aligned_cols=410 Identities=12% Similarity=0.029 Sum_probs=169.5 Q ss_pred hhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchh Q lcl|Aclame:pro 34 LSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFL 113 (945) Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~ 113 (945) .| --|+ ||-|+.+- +..|.+-+-.|.-. .. .+...-+..+.... -|.. .. T Consensus 1 ~~---------~~~~---~~~~~~~~-~~~~~~~rd~l~~~---~~----------glg~~r~~~~~~~g---~~~~-~~ 50 (449) T protein:vir:10 1 MT---------DKLT---LAVNHALN-DARMARARMGLMVP---TM----------GLDNKRHSAWCEYG---FPEL-VT 50 (449) T ss_pred Cc---------hhhH---HHHhhhcc-hhHHHHHHHHHHHH---Hh----------cCCcccchhhhhcC---Cccc-CC Confidence 00 0000 11111110 00000000000000 00 00000000010000 0111 11 Q ss_pred hhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhc-ccHHHHHHhccCccCChHHHHHHHHHHHH Q lcl|Aclame:pro 114 INLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRD-ARNILEFLERPDPYFSEVNSWEYLLGMVL 192 (945) Q Consensus 114 ~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~-dhpL~~LL~rPNp~mT~~eFwetli~~Lv 192 (945) ..-+...+-.+..+..+|+.+++.+-.--..+. .|.+....+.+.. ...+.+|+. ..+|+.+....- T Consensus 51 ~~~l~~~Yr~~~ia~~iVd~~~d~~~~~~~~i~----~g~~~~~~~~~~~~e~~~~~l~~--------~~~~~~l~ea~~ 118 (449) T protein:vir:10 51 YENLYSLYRRGGIAHGAVEKLVGKCWQTNPEII----EGDDADDSEDETSWEKKSKQVFT--------NRLWRSFAEADR 118 (449) T ss_pred HHHHHHHHhcCchhHHHHHhhhhhhhhcCcccc----cCccccchhhhHHHHHHHHHHHH--------HHHHHHHHHHHH Confidence 233344445678888999999986621111111 1111111111110 111223322 245666555554 Q ss_pred HHHhccCCeEEEE-EecC---------CCeEEEEEEcCCceeEEEEc------CCCceEEEEEEe--eCCc--eeeeecc Q lcl|Aclame:pro 193 DDILTIDRGAIVK-IRDE---------QGNLVAITPVDGTTIKPILS------EDTGIVVGYVQE--VDGA--IVAHFDK 252 (945) Q Consensus 193 ~dlLl~Gna~i~i-ird~---------~G~pveL~pLdPs~Vtv~~d------~dG~~~~~Yv~~--~dG~--~~~~~~a 252 (945) +. .++|.+++++ +++. .|.+..|.|+....+++... ++-+.+..|... ..|+ ....+.+ T Consensus 119 ~~-rl~Gga~i~i~v~d~~~l~~Pl~~~~~i~~i~v~~~~~i~~~~~~~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~ 197 (449) T protein:vir:10 119 RR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHP 197 (449) T ss_pred hh-hccCcEEEEEEecCCCCCCcccccCcceeeEEeeccccCChhhhhcCCCCCCCCCceEEEEeeeccCCCccceeecc Confidence 43 4566555554 3332 23566777777665554321 111233333322 1221 2233455 Q ss_pred cceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCceEEEE-eccccccccccchhccHHHHH Q lcl|Aclame:pro 253 RDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFID-KGNLDYYRKGGSIPEGILA-IEPPSYKEGDIYPQLSREQLE 330 (945) Q Consensus 253 ~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aae-e~~a~~F~nnGa~PsGILs-~k~g~~~~~k~~~~LS~Eq~e 330 (945) +-++|+... .. -|.|-++.+.+.+.....+. -+...++.+ -.+-..+.. .+..........+.-.++..+ T Consensus 198 SRl~~~~~~-----~~--~g~~~L~~~yn~l~~~~~~~~~~a~~~l~~-~~rq~~~~~~~~~~~~~l~~~~~~~~e~~~~ 269 (449) T protein:vir:10 198 DRVFILGDY-----SE--DAIGFLEPAYNAFVSLEKVEGGSGESFLKN-AARQLNVNFEKEIDFTNLASLYGVSIDELQD 269 (449) T ss_pred ceeEeecCC-----CC--CChhHHHHHHHHhhhHHHhhhhHHHHHHHH-HHHHHhhhhhhhhhhhhhhHHhhCCchHHHH Confidence 555554211 11 26667777766543322222 112222211 100000000 000000000000111223334 Q ss_pred HHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHH Q lcl|Aclame:pro 331 SIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTK 410 (945) Q Consensus 331 rlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~ 410 (945) ++.+..+....|.+ .+.++.+-+|+.++.++.+.. +......++||++-|||...|-..+.+..+..+. ...|+ T Consensus 270 ~~~~~~~~~~~~~~---~~~i~~~~d~~~~~~~~sgl~--d~l~~~~q~iaaa~~IP~t~L~Gqsp~glnst~D-~~nyy 343 (449) T protein:vir:10 270 KFNEVAGEINRGND---VLMTTQGATVTPLVTSVADPT--ATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-QKYFN 343 (449) T ss_pred HHHHHHHHHhccch---heeecCCcceEEEecccCChh--HHHHHHHHHHHHHhCCCeeeeeccCccccccchh-HHHHH Confidence 44444444444432 234566667888777776654 5667778889999999987774433343333332 33343 Q ss_pred H------HHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHH-------HHHHHHhCC---CcCHHHHHHH Q lcl|Aclame:pro 411 A------KGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWN-------IIQGQLNTG---FRSINEARME 474 (945) Q Consensus 411 ~------~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae-------~~~~~v~~G---imT~NEaRe~ 474 (945) . .-|.|.++.+-+.|-+.-+-. ....+.|+|+.+..++.+++++ ++++++++| +++++|+|+. T Consensus 344 d~i~~~Q~~l~p~le~l~~~l~~s~~g~-~~~d~~i~f~pL~~~t~kEkAei~k~~A~a~~~~~~ag~~~~~~~~EiR~~ 422 (449) T protein:vir:10 344 ARCQSRRVDLSFEIEDFCDKLIELKIID-AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTA 422 (449) T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcCC-CCCceeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHccccCCcCHHHHHHH Confidence 2 235555555554443221111 1235899999998888777654 455566666 8999999999 Q ss_pred HhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCC Q lcl|Aclame:pro 475 KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPS 520 (945) Q Consensus 475 lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~ 520 (945) +|++|..+.+. +++...+. +.+++... T Consensus 423 ~~~~~~~~~~~---------~~e~~de~----------~~~~d~~a 449 (449) T protein:vir:10 423 AGYDNDDEEPL---------GEEDGDEE----------DKATDSAA 449 (449) T ss_pred hcccCCCCCCC---------CCCCCccc----------cccCCcCC Confidence 99998653211 11000000 00000000 No 137 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.41 E-value=1.3e-11 Score=80.22 Aligned_cols=471 Identities=10% Similarity=-0.034 Sum_probs=211.2 Q ss_pred hhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCccc--ceeccccCCc Q lcl|Aclame:pro 31 VDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPES--LMYLPSISDP 108 (945) Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~s--l~~lps~s~p 108 (945) ..-+-|-.-+ |-|-...+-.+.... ..-++....+ ....+....+ T Consensus 1 Mn~iDr~i~~--~sP~~a~~R~~ar~~-------------------------------~~~y~aa~~~r~~~~~~~~~s~ 47 (548) T protein:vir:95 1 MNLIDRLLEP--LAPELVARRLAAREA-------------------------------IQAYEAARPGRTHKAKRQPLGA 47 (548) T ss_pred CchHHhHhhh--cchHHHHHHHHhHHH-------------------------------hccccccCccccccccCCCCCh Confidence 1111111110 112111111111100 0001111110 0011111112 Q ss_pred ccc------hhhhhhHHhhhccHHHHHHHHHHHHhhc-cCceEEEEec--cCcccccccchhhcccHHHHHHh--ccCcc Q lcl|Aclame:pro 109 DAF------FLINLFRKYRFNNDSKLIKVSEIPKKLT-SKELEIYKHI--EDKHVNYYLKRIRDARNILEFLE--RPDPY 177 (945) Q Consensus 109 ~~~------~~~~v~~~~Am~nsaV~aCV~iIA~~IA-sLP~~VyRrt--edg~ee~~~r~~a~dhpL~~LL~--rPNp~ 177 (945) +.. .+..-.+..+.+|+.+..+|+.+.++|- +..+.+..+- .++... ..-...+..+++ .-+++ T Consensus 48 ~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~~~~nvVG~~G~~i~p~~l~~d~~~a-----~~l~~~ie~~w~~Wa~~~D 122 (548) T protein:vir:95 48 DTSLQKSAVSMREQCRKLDEDHDLVTGLLDRLEERVVGGSGIGVEPLPLRLDGSVH-----AELAMEIRSAWAEWSLSPE 122 (548) T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccCccccceeeeecCCCHHHH-----HHHHHHHHHHHHHhhcCcc Confidence 211 1233456677899999999998766554 3334443322 221110 011122233332 11333 Q ss_pred CChHHHHHHHHHHHHHHHhccCCeEEEEEecCC-------CeEEEEEEcCCceeEE-------------EEcCCCceEEE Q lcl|Aclame:pro 178 FSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQ-------GNLVAITPVDGTTIKP-------------ILSEDTGIVVG 237 (945) Q Consensus 178 mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~-------G~pveL~pLdPs~Vtv-------------~~d~dG~~~~~ 237 (945) .++...|..+...++..++..|.+++.+.+... ..+..|..|+|+++.. ..|..|....+ T Consensus 123 ~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~~~~~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY 202 (548) T protein:vir:95 123 TSGELTRPQVERLMCRTWLRDGEGLAQKLMGRVPNYTFATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAY 202 (548) T ss_pred ccccCCHHHHHHHHHHHHHhCCceEEEeeecccccccCCcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEE Confidence 333333344566677888889999887765432 2357889999988842 22333333222 Q ss_pred EEEeeC---------CceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCce Q lcl|Aclame:pro 238 YVQEVD---------GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVIL---SDIFIDKGNLDYYRKGGSIPE 305 (945) Q Consensus 238 Yv~~~d---------G~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~---~~~aaee~~a~~F~nnGa~Ps 305 (945) +..... ......+++++|+|+.....++. . -|+|.+..++..+. ....++...++. .+.-. T Consensus 203 ~i~~~hPgd~~~~~~~~~~~rvpA~~VlHif~~~r~gQ-~--RGvs~lapvl~~l~~l~~y~dael~~aki----~A~~a 275 (548) T protein:vir:95 203 HLLKDHPGNLQTLGGSLAVKRVEAERIIHIAYRKRIGQ-N--RGVPMLHAVLIRLADLKDYEESERVAARI----SAALA 275 (548) T ss_pred EEeecCCCcccccccccceeeechhHheecccccCCcc-c--cCcchHHHHHHHHHHHhHHHHHHHHHHHH----hhhhe Confidence 222211 12345689999999876544432 2 37777766665444 444444444443 23445 Q ss_pred EEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccc-ccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 306 GILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPI-LSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVY 384 (945) Q Consensus 306 GILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~-VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aF 384 (945) ++++.+.+....... .+... ... -.-..|..+ .|..|.+++..+.+.....|.+..+.....||+.+ T Consensus 276 ~fi~~~~~~~~~~~~----~~~~~-------~~~-~~~~pG~iv~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~IAagl 343 (548) T protein:vir:95 276 MYIKKGNPDSYTVEP----GKDRK-------NRT-IPIAPGMVFDDLEPGEDVGMIESNRPNPFLEGFRNGQLRMIGAGT 343 (548) T ss_pred eeeecCCCccccCCC----Ccccc-------ccc-ccccCCccccccCCCceeeecCCCCCCCCHHHHHHHHHHHHHhhc Confidence 666654332111100 00000 000 001123333 47888888887766566788999999999999999 Q ss_pred cCChhhcccccCCCcccHHHHHH-----------HHHHHHHHHHHH-HHHHHHHH-hhc-cc-cc-cceeEEEeechhh- Q lcl|Aclame:pro 385 QVSPQDVGILEGSNKATAEVMAS-----------LTKAKGLEPLMA-TISKGFDE-VVS-EF-RN-EKDIKLWFKEDDL- 447 (945) Q Consensus 385 GVPP~lLG~~e~gT~SN~Eqq~~-----------~F~~~tL~Pll~-~IEqeLn~-kL~-~~-~~-~~g~~f~fd~~~l- 447 (945) |||-+.+-..-.+|||++.+... .+...-++|+.+ +++.++-. .+. +. .. ...+.+.|..... T Consensus 344 GipYe~ltgD~s~nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~wle~a~l~G~i~lP~~~~~~~~~~~~W~~P~~~ 423 (548) T protein:vir:95 344 RSTYSSVSRAYDGTYSAQRQELVEGWLGYDLLQHEFIDYWCRPVYRSWLQMYLLARKERLPADVDHRTLYAAVYQGPVMP 423 (548) T ss_pred CCCHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCchhheeeeeecCCcc Confidence 99977774333458877544433 345556666444 34444433 221 11 11 1234566665554 Q ss_pred -cCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccc------ccccccccccc---cchhhc-cCCCCcccccccC Q lcl|Aclame:pro 448 -EKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVP------FSGLRNWKPED---EQAKAQ-QGAMPPQLAQAMA 516 (945) Q Consensus 448 -~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~------l~~~n~~~ped---~~a~~~-~~a~~~~~~~~~~ 516 (945) .|+...+++...++++|..|.-|+-++.|.+|-+--++. .--.+...+.+ ....+. ....+++....+. T Consensus 424 ~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~G~D~~ev~~q~a~E~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (548) T protein:vir:95 424 WINPMHEANAWELLVKAGFADEAEVARARGRDPRELKKSRETEIKANRAAGLVFSSDAYHQLVKSGMDPVEAVQKVYLGV 503 (548) T ss_pred ccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccCCCCchhhhcccc Confidence 489999999999999999999999888998874311110 00001000000 000000 0000000000000 Q ss_pred CCCCCCCCCCCCCccccchhHHHHHHHHHHHHhhhhhhh---hHHHHHhhccCCccc Q lcl|Aclame:pro 517 DQPSQQGGGVDENSSVPSEQKNAGLEVLRNLFKSLDANA---SENLKQVIELTNDDN 570 (945) Q Consensus 517 d~~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k~l~a~~---~~~~~~~~dl~n~~~ 570 (945) ..+ .++++.++. .. ...++..+ +.-+. ..+-..+.|-+|.+- T Consensus 504 ~~~-~~~~~~~~~--~~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 548 (548) T protein:vir:95 504 GKM-LTADEAREL--VN--RYGAGLPV-------PGPDFPNESNNGGADGQPSNPDP 548 (548) T ss_pred ccc-cccchhHHh--hc--cCCCCCcC-------CCCCCCcccccCCCCCCCCCCCC Confidence 000 000000000 00 00000000 00000 001112233333333 No 138 >protein:vir:102426 Length: 631 # NCBI annotation: gp11 # Family: family:all:2798 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655288;genbank:gi:109521851;genbank:GeneID:4157741 Probab=99.38 E-value=3.7e-12 Score=83.23 Aligned_cols=530 Identities=13% Similarity=0.077 Sum_probs=248.9 Q ss_pred eeeeecceeeeccccccccccccCCC-CCccccc--C-cccc--eeccccCCcccchhhhhhHHhhhccHHHHHHHHHHH Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPF-KFNLFEY--S-PESL--MYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIP 135 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~-~f~L~~~--s-~~sl--~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA 135 (945) .+--..=|+.+.||-..|...|.-.. ...+.+. + ..++ ..--.|. ..+| +.+...+-++..|..|+ T Consensus 1 ~~a~~~lr~~rrpkg~~~a~~r~L~aAs~~~~dpg~~~~~~~g~~~~~~WQ-~eAW-------~~~d~v~Elry~vgW~~ 72 (631) T protein:vir:10 1 MAATQSLRLVRRPKGGRPAPSRALTAASQPLPDPSQVFSKSTGISRNSDWQ-TDAW-------EAVDLVGELRYYVGWRA 72 (631) T ss_pred CCcccceeeeecCCCCCccchhhhhhhhccccchhhhhhhhcCCcccchhh-HHHH-------HHHHhhhhHHHHhhhhh Confidence 23334446667777555544442211 0111000 0 0000 0000111 1111 11223467788899999 Q ss_pred HhhccCceEEEEeccCcccc-cccchhhccc-HHHHHHh-ccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEe-cCCC Q lcl|Aclame:pro 136 KKLTSKELEIYKHIEDKHVN-YYLKRIRDAR-NILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIR-DEQG 211 (945) Q Consensus 136 ~~IAsLP~~VyRrtedg~ee-~~~r~~a~dh-pL~~LL~-rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iir-d~~G 211 (945) ++++.+.+.+-+.+.++... +...+...++ .+.++.. -+..-+...+ +++.+..++-..|..|+.+.. ...| T Consensus 73 ~s~sr~rL~as~idpDtg~ptg~iee~~~~~~~v~~~~~~i~gG~lgQ~~----llkrl~~~ltV~GE~wiv~l~~p~~~ 148 (631) T protein:vir:10 73 SSCSRCRLVASELDENTGLPTGGISEDNTEGERVREIVSKIADGTLGQAA----LTKRVVECLTVPGELWIVILTRPVKG 148 (631) T ss_pred hhhceeeeEeeeeccCCCCCccccccCCchhHHHHHHHHhcCCCcchHHH----HHHHHHhheecccceEEEEEeccCcC Confidence 99999999888877664332 2222222222 2344444 2444555444 667778887788887776522 2221 Q ss_pred ---e-------EEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHH Q lcl|Aclame:pro 212 ---N-------LVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYK 281 (945) Q Consensus 212 ---~-------pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~ 281 (945) + .-+++++....|...-..+|.. + ....|..-......|++.-..+++|.. .-+--||+.+++. T Consensus 149 ~~~~pd~~~r~~~~W~~vt~~ei~~~~~g~g~~---v-~lp~g~~h~~~~~~D~l~RiW~P~prr--~~e~dSpvra~l~ 222 (631) T protein:vir:10 149 APAQPDGSVRTRQEWYAVSKEEIKKSNKGSGTN---I-VLPTGEEHEFVKGTDIIFRVWIPKPRK--ASEPDSPVRAVLD 222 (631) T ss_pred CCCCcccccccccceeeccHHHHhcccCcccce---e-ecCCCCccceecCCceEEEeeCCCccc--ccCCcchhHHHHH Confidence 1 3356777777665433333321 1 123444444444455544333444433 3467799999998 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEecccccccccc-c----------hhccHHHHHHHHHHHH----HHhcC---c Q lcl|Aclame:pro 282 VILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDI-Y----------PQLSREQLESIQRQLQ----AIMMG---D 343 (945) Q Consensus 282 ~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~-~----------~~LS~Eq~erlKe~we----~~~sG---~ 343 (945) .+.....+.+...+-. ++..+-.|||..+.....+... + .-...-+..+|.+.+- ..+.. . T Consensus 223 ~l~Ei~~~t~~i~aaa-kSRl~gnGvlflP~els~P~~~~~~~~~~g~~v~~~~g~pa~~~l~~~l~q~a~tai~De~S~ 301 (631) T protein:vir:10 223 SIREIVRTTKTIANAS-KSRLIGNGVLFVPHEMSLPAAQGPVSEVEGEEIAPLVGEPAVQQLTDMLFQVAETAVEDEDSQ 301 (631) T ss_pred HHHHHHHhhhHHHHHH-HHHHhhCceeEeccccccCCCCCCCCCcCCccCCccccchhHHHHHHHHHHHHhhhhcCCCCc Confidence 8877766666655443 3455667788777655443111 1 1122224444444432 33322 2 Q ss_pred ccCcccccC------CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 344 YTQVPILSG------GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKAKGLEP 416 (945) Q Consensus 344 Nagkp~VL~------~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~~tL~P 416 (945) .+-.|+++. ++++...+.. ..+.--+.+|+..+..+|....|||..| |.+.++|.-+.-|....-++-.|.| T Consensus 302 aA~vPii~~~p~E~i~~i~hlkf~~-ei~e~aiktR~daI~RlA~glDi~pE~LLGlGsd~NHWsAWqI~dedVrlHI~P 380 (631) T protein:vir:10 302 AAFIPVIAGVPGEQIKDVKHIRFDN-EITEVAIKTRNDAIARLAMGLDVSPERLLGLGSQTNHWSAWQISDEDVQLHIAP 380 (631) T ss_pred cceeeeeEeechHHhcCeeEEeecC-chhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecch Confidence 345666653 3455555553 3444567899999999999999999866 5556777766666666677888999 Q ss_pred HHHHHHHHHHHhhc-cc---cc--cceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccc---- Q lcl|Aclame:pro 417 LMATISKGFDEVVS-EF---RN--EKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVP---- 486 (945) Q Consensus 417 ll~~IEqeLn~kL~-~~---~~--~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~---- 486 (945) .+..|+++|++.++ +. ++ -..|-+.||...+...-++.+-...+.+.|.+|-...|+.+|+.--.|-|.. T Consensus 381 ~l~lic~AlT~q~Lrp~Le~eGvDp~kYvvW~DaS~Lt~dPdr~deA~qa~drGAIt~eAlrk~lGf~eDd~yd~~t~e~ 460 (631) T protein:vir:10 381 VMEIFCQALTDQILRVTLAREGIDPSKYVVWYDPSQLTIDPDKSDEAKFAYENGAINGEALRKYLGLGDDAGYDFTTREG 460 (631) T ss_pred HHHHHHHHHHhhHHHHHHHHhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCcCHHHHHHHhcCchhcccCcCchHH Confidence 99999999986443 32 22 2348899999988754445555557889999999999999999765443310 Q ss_pred -------ccccccc-cc--cccchhhccCCCCccc------------ccccCCCCCCCCCCCCCCccccchhHHHHHHHH Q lcl|Aclame:pro 487 -------FSGLRNW-KP--EDEQAKAQQGAMPPQL------------AQAMADQPSQQGGGVDENSSVPSEQKNAGLEVL 544 (945) Q Consensus 487 -------l~~~n~~-~p--ed~~a~~~~~a~~~~~------------~~~~~d~~~~~~g~~dd~e~~~se~k~a~~~~l 544 (945) .++.... .| ....+..-++..++++ .....+...+.+++.++. +..+......++. T Consensus 461 ~~~~a~~av~~dpaLip~lApl~~~~~~~v~~P~~~a~~~~g~ed~~~~~~~~~g~~epdt~d~~--p~~~~a~~~~~iv 538 (631) T protein:vir:10 461 WVMWAQDAVSKDPTLIPMLAPLIAGVLKQIEFPQQQAIDSGGNEDTSDADDLDDGEQEPDTEDDD--DGTQKAGLETGIV 538 (631) T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhhhccCCCCCCCCCCCCCccccccccccCCCCCCCCCCC--CccccccchHHHH Confidence 0000000 00 0000000000000000 000011111111111111 1111111111222 Q ss_pred HHHHhhhhhhhhHH--------HHHhhccCCcc--cc-----ccchHHH----HHHHH-----hhhhHHHHHhhhhhhhc Q lcl|Aclame:pro 545 RNLFKSLDANASEN--------LKQVIELTNDD--NY-----LKEKELL----TRVLK-----SVGLDSVSEFIENNSQT 600 (945) Q Consensus 545 r~~~k~l~a~~~~~--------~~~~~dl~n~~--~~-----l~e~~~~----~~~~~-----~~~~~~~~~~~~~~~~~ 600 (945) +.+.-+.=..+.+. ..+..+.+.-+ +. -.|-++. -++++ +.|.+. T Consensus 539 ~llv~RALelAGkRl~~r~r~~~ar~~~v~~he~H~~~~Pv~~~ev~rli~gwd~~ld~~~~~~Lg~d~----------- 607 (631) T protein:vir:10 539 DLMVDRALELVGKRRRGRDRETLARLSGVRERDYHRYMDPVPESEVDRLMSGWDSALDDKILLRLGLDP----------- 607 (631) T ss_pred HHHHHHHHHhhcchhcCCcccchhHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCH----------- Confidence 21111110111111 11222222211 00 0122222 11121 111111 Q ss_pred ccccCCCcccccchhhHHHHHHhhccchhhhhhhhcccccchhh Q lcl|Aclame:pro 601 DVEVSAKDILSFKYNSLVEDETIYATEKDIVLRLLGKNSLDHRE 644 (945) Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (945) -.+-+.-+-| |+++|-+.-.|.-. T Consensus 608 --------------~~lr~~v~a~------v~~~lt~~~~~~~~ 631 (631) T protein:vir:10 608 --------------GTIRSAVRRK------VMAELTRPVIDVVA 631 (631) T ss_pred --------------HHHHHHHHHH------HHHHHHHHHHHhcC Confidence 0011111111 11111111111111 No 139 >protein:vir:107517 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943786;genbank:gi:38638411;genbank:GeneID:2657197 Probab=99.32 E-value=2.1e-11 Score=79.12 Aligned_cols=539 Identities=13% Similarity=0.061 Sum_probs=238.6 Q ss_pred hhccceeeeeeeeeecceeeeccccccccccccCCC--CCcccccCcccce---ec---cccCCcccchhhhhhHHhhhc Q lcl|Aclame:pro 52 LAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPF--KFNLFEYSPESLM---YL---PSISDPDAFFLINLFRKYRFN 123 (945) Q Consensus 52 ~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~--~f~L~~~s~~sl~---~l---ps~s~p~~~~~~~v~~~~Am~ 123 (945) +|- -.=|+.++||..-|...|..=. ...+. ..+..+. +- -.|. ..+| +.+.. T Consensus 1 ma~-----------~~lr~~rrpk~~p~~~rr~~ltaAsq~~~-~p~~~~kt~~~~~ar~~WQ-~eAW-------~~~d~ 60 (639) T protein:vir:10 1 MAA-----------TSLRVVRRPKGSAPAARRRSLTAASQLIT-DPQKQMKTSLMGTARNEWQ-SEAW-------DFSES 60 (639) T ss_pred CCc-----------cceeeeecCCCCCcchhhHHHhhhhhccC-Ccccchhhhccccchhhhh-hhhh-------hhhhh Confidence 111 1346778888776665552110 00000 0001110 00 0111 1122 22223 Q ss_pred cHHHHHHHHHHHHhhccCceEEEEeccCcccccc---cchhhcccHHHHHHhc-cCccCChHHHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 124 NDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYY---LKRIRDARNILEFLER-PDPYFSEVNSWEYLLGMVLDDILTID 199 (945) Q Consensus 124 nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~---~r~~a~dhpL~~LL~r-PNp~mT~~eFwetli~~Lv~dlLl~G 199 (945) .+-++..|..|+++++.+.+.+-+.+.++....+ +.+....+.+....++ -..-+... .+++.+..++-..| T Consensus 61 v~Elry~vgW~~~s~sr~rL~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa----~llkr~~~~ltV~G 136 (639) T protein:vir:10 61 IGELSYYVSWRANSCSRTTLIPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQA----ALIKRAVECMTVVG 136 (639) T ss_pred hhhHHHHhhhhhhhhceeeeEeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHH----HHHHHHHhheeccc Confidence 4667888999999999999988877766543311 1223334454444332 11222222 46778888888888 Q ss_pred CeEEEEE-ecCCCe------EE-EEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcc Q lcl|Aclame:pro 200 RGAIVKI-RDEQGN------LV-AITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGY 271 (945) Q Consensus 200 na~i~ii-rd~~G~------pv-eL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~Gy 271 (945) ..|+... +...+. +. .++.+....|. ...|+... ..-.+|.........|++.-..++.| ...-+ T Consensus 137 E~wi~~l~r~~k~~~~~~~~~~~~W~vvs~~Ei~---~~~~~~~~--i~lPdG~~he~~~~~d~l~RvW~P~p--rr~~e 209 (639) T protein:vir:10 137 EVWIAVLIRQEKDPVTGLAAPRARWYAVTREEIK---SKAGETAE--ISLPDGKTHEFNRDLDSLVRIWNPRP--RKASQ 209 (639) T ss_pred ceEEEEEEecCccccCcccccccceeeeeHHHhc---ccCCCeeE--eecCCCCCccccCCCceEEEEeCCCc--ccccC Confidence 8886543 333332 12 34444444443 22222111 22234443332233344432333333 33346 Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccc------------------hhc-cHHHHHHH Q lcl|Aclame:pro 272 SLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIY------------------PQL-SREQLESI 332 (945) Q Consensus 272 GlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~------------------~~L-S~Eq~erl 332 (945) --||+.+++..+.....+.+...+-. ++..+-.|||..+.......... +.. .++-..-| T Consensus 210 ~dSpvra~l~~l~Ei~~~t~~i~aaa-kSRl~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l 288 (639) T protein:vir:10 210 ATSPVRACLETLREIERTTRKIKNAA-KSRVMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMI 288 (639) T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHH-HHHHhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHH Confidence 77999999888877666666554433 34455567766654433322110 011 22222333 Q ss_pred HHHHHHHhcC---cccCcccccCC------CceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHH Q lcl|Aclame:pro 333 QRQLQAIMMG---DYTQVPILSGG------KFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAE 403 (945) Q Consensus 333 Ke~we~~~sG---~Nagkp~VL~~------G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~E 403 (945) .+.....+.. ..+-.|+++.. +++...+.. ..+.--+.+|+..+..+|....|||..|=...++|..+.- T Consensus 289 ~qaa~tai~De~S~aA~vPiia~~p~E~l~~ikhl~f~~-ei~e~aiktR~daI~RlA~glDi~pE~LLGl~d~NHWsAW 367 (639) T protein:vir:10 289 YQASVAAMEDENSQAAYIPLVASVAAEHLEKVQHIKFGN-EVTEVEIKTRIDAITRLAMGLDVSPERLLGMSKGNHWSAW 367 (639) T ss_pred HHHHHhhhcCCCCccceeeeeEeechHHhcCeeeeeecC-chhHHHHhhHHHHHHHHHhccCCchhheeecccccceEEE Confidence 3333344432 23456666543 344444443 3444567899999999999999999877544667776666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cc---cc--cceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhC Q lcl|Aclame:pro 404 VMASLTKAKGLEPLMATISKGFDEVVS-EF---RN--EKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGL 477 (945) Q Consensus 404 qq~~~F~~~tL~Pll~~IEqeLn~kL~-~~---~~--~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGl 477 (945) |....-++-.|.|.+..|+++|++.++ +. ++ -..|-+.||...+...-++.+-...+.+.|.+|-.-.|+.+|+ T Consensus 368 qI~dedvrlHI~P~l~~icdAlT~~~Lrp~Le~eGvDp~kYvvW~DaS~Lt~dPd~~deA~qa~drGAIt~eAlR~~lG~ 447 (639) T protein:vir:10 368 AIGDEDVQLHIKPVMDLICQAIYNDILTPLLAREGIDPTKYILWYDASGLTSDPDLSDEAVEAHDRGAITSAALRRLLNV 447 (639) T ss_pred EecccceeeecchhHHHHHHHHHhhHHHHHHHHhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhcc Confidence 666667788899999999999986543 22 22 2347899999988754445555557889999999999999999 Q ss_pred CCCCCccccccc-------------cccc---cccccchhhccCC-CCcccccccCCCCCCCCCCCCCCc---------- Q lcl|Aclame:pro 478 EPVPWGDVPFSG-------------LRNW---KPEDEQAKAQQGA-MPPQLAQAMADQPSQQGGGVDENS---------- 530 (945) Q Consensus 478 pPveGGD~~l~~-------------~n~~---~ped~~a~~~~~a-~~~~~~~~~~d~~~~~~g~~dd~e---------- 530 (945) .--+|-|..-.. .... .+......+..+- +++...+.+....+.+.+...++. T Consensus 448 ~edd~yd~~t~e~~~~~A~~~V~~~P~li~~~apl~~P~lq~~e~ptp~~a~~~a~~~~~~de~~ga~~~~ePdte~~~~ 527 (639) T protein:vir:10 448 GEDSGYDLTTLDGCREFAADVVTKNPELIAMYAPLLSSQLAGIEFPQPANAIESTREDEEDDEDSGARQQREPQTEDERS 527 (639) T ss_pred ccccCCCCCCcHHHHHHHHHHhcCCcchhhhhhhccCccceecccCCCCCCCCCCCCCCCcccccCCCCCcCCCcccccC Confidence 765544411100 0000 0000000000000 010000000000000000000000 Q ss_pred ---cccchhHHHHHHHHHHHH-hh--hhhhh------hHHHHHhhccCCccccc-------cchHHHHHHHHhhhhHHHH Q lcl|Aclame:pro 531 ---SVPSEQKNAGLEVLRNLF-KS--LDANA------SENLKQVIELTNDDNYL-------KEKELLTRVLKSVGLDSVS 591 (945) Q Consensus 531 ---~~~se~k~a~~~~lr~~~-k~--l~a~~------~~~~~~~~dl~n~~~~l-------~e~~~~~~~~~~~~~~~~~ 591 (945) .++-..+.....+.+.+. +. +.++. .+...++-+.+.-+.-. .|-++.... -+++- T Consensus 528 ~~~a~~~~~~a~~v~a~~llv~RALelAGkRr~~~~~r~~~a~~r~vp~he~H~~l~Pv~~~~~~rli~g-----wd~~l 602 (639) T protein:vir:10 528 TEEAASLNDRAAYLVAERLLVNRALDLAGKRRFKVNDAALKTKLRDVPAHEYHRVLPPVRSSEIPRLIAG-----WDTAL 602 (639) T ss_pred CccccCcCchhHHHHHHHHHHHHHHHhhcccccCCCChhhHHHhhcCChhHceeecCCCChHHHHHHHHH-----HHhHH Confidence 001001111111001111 11 11111 01111111111111100 112222111 11111 Q ss_pred HhhhhhhhcccccCCCcccccchhhHHHHHHhhccchhhhhhhhcccccchhhh Q lcl|Aclame:pro 592 EFIENNSQTDVEVSAKDILSFKYNSLVEDETIYATEKDIVLRLLGKNSLDHRET 645 (945) Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (945) +=+-+. ..-.| ... +-+.-+- -|+++|-+.-.|..-. T Consensus 603 d~~~~a-~lg~D-----~~~-----lr~~v~~------~v~~~lt~~~i~~ev~ 639 (639) T protein:vir:10 603 EDEVVA-SLGLD-----NEK-----LRNAVLA------TVRRQLTQPLIEGEVV 639 (639) T ss_pred HHHHHH-HhCCC-----HHH-----HHHHHHH------HHHHHHhhhhhccccC Confidence 100000 00000 000 0011111 1222222211111111 No 140 >protein:vir:97900 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655104;genbank:gi:109391854;genbank:GeneID:4157263 Probab=99.32 E-value=2.1e-11 Score=79.12 Aligned_cols=539 Identities=13% Similarity=0.061 Sum_probs=238.6 Q ss_pred hhccceeeeeeeeeecceeeeccccccccccccCCC--CCcccccCcccce---ec---cccCCcccchhhhhhHHhhhc Q lcl|Aclame:pro 52 LAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPF--KFNLFEYSPESLM---YL---PSISDPDAFFLINLFRKYRFN 123 (945) Q Consensus 52 ~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~--~f~L~~~s~~sl~---~l---ps~s~p~~~~~~~v~~~~Am~ 123 (945) +|- -.=|+.++||..-|...|..=. ...+. ..+..+. +- -.|. ..+| +.+.. T Consensus 1 ma~-----------~~lr~~rrpk~~p~~~rr~~ltaAsq~~~-~p~~~~kt~~~~~ar~~WQ-~eAW-------~~~d~ 60 (639) T protein:vir:97 1 MAA-----------TSLRVVRRPKGSAPAARRRSLTAASQLIT-DPQKQMKTSLMGTARNEWQ-SEAW-------DFSES 60 (639) T ss_pred CCc-----------cceeeeecCCCCCcchhhHHHhhhhhccC-Ccccchhhhccccchhhhh-hhhh-------hhhhh Confidence 111 1346778888776665552110 00000 0001110 00 0111 1122 22223 Q ss_pred cHHHHHHHHHHHHhhccCceEEEEeccCcccccc---cchhhcccHHHHHHhc-cCccCChHHHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 124 NDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYY---LKRIRDARNILEFLER-PDPYFSEVNSWEYLLGMVLDDILTID 199 (945) Q Consensus 124 nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~---~r~~a~dhpL~~LL~r-PNp~mT~~eFwetli~~Lv~dlLl~G 199 (945) .+-++..|..|+++++.+.+.+-+.+.++....+ +.+....+.+....++ -..-+... .+++.+..++-..| T Consensus 61 v~Elry~vgW~~~s~sr~rL~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa----~llkr~~~~ltV~G 136 (639) T protein:vir:97 61 IGELSYYVSWRANSCSRTTLIPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQA----ALIKRAVECMTVVG 136 (639) T ss_pred hhhHHHHhhhhhhhhceeeeEeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHH----HHHHHHHhheeccc Confidence 4667888999999999999988877766543311 1223334454444332 11222222 46778888888888 Q ss_pred CeEEEEE-ecCCCe------EE-EEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcc Q lcl|Aclame:pro 200 RGAIVKI-RDEQGN------LV-AITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGY 271 (945) Q Consensus 200 na~i~ii-rd~~G~------pv-eL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~Gy 271 (945) ..|+... +...+. +. .++.+....|. ...|+... ..-.+|.........|++.-..++.| ...-+ T Consensus 137 E~wi~~l~r~~k~~~~~~~~~~~~W~vvs~~Ei~---~~~~~~~~--i~lPdG~~he~~~~~d~l~RvW~P~p--rr~~e 209 (639) T protein:vir:97 137 EVWIAVLIRQEKDPVTGLAAPRARWYAVTREEIK---SKAGETAE--ISLPDGKTHEFNRDLDSLVRIWNPRP--RKASQ 209 (639) T ss_pred ceEEEEEEecCccccCcccccccceeeeeHHHhc---ccCCCeeE--eecCCCCCccccCCCceEEEEeCCCc--ccccC Confidence 8886543 333332 12 34444444443 22222111 22234443332233344432333333 33346 Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccc------------------hhc-cHHHHHHH Q lcl|Aclame:pro 272 SLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIY------------------PQL-SREQLESI 332 (945) Q Consensus 272 GlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~------------------~~L-S~Eq~erl 332 (945) --||+.+++..+.....+.+...+-. ++..+-.|||..+.......... +.. .++-..-| T Consensus 210 ~dSpvra~l~~l~Ei~~~t~~i~aaa-kSRl~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l 288 (639) T protein:vir:97 210 ATSPVRACLETLREIERTTRKIKNAA-KSRVMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMI 288 (639) T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHH-HHHHhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHH Confidence 77999999888877666666554433 34455567766654433322110 011 22222333 Q ss_pred HHHHHHHhcC---cccCcccccCC------CceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHH Q lcl|Aclame:pro 333 QRQLQAIMMG---DYTQVPILSGG------KFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAE 403 (945) Q Consensus 333 Ke~we~~~sG---~Nagkp~VL~~------G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~E 403 (945) .+.....+.. ..+-.|+++.. +++...+.. ..+.--+.+|+..+..+|....|||..|=...++|..+.- T Consensus 289 ~qaa~tai~De~S~aA~vPiia~~p~E~l~~ikhl~f~~-ei~e~aiktR~daI~RlA~glDi~pE~LLGl~d~NHWsAW 367 (639) T protein:vir:97 289 YQASVAAMEDENSQAAYIPLVASVAAEHLEKVQHIKFGN-EVTEVEIKTRIDAITRLAMGLDVSPERLLGMSKGNHWSAW 367 (639) T ss_pred HHHHHhhhcCCCCccceeeeeEeechHHhcCeeeeeecC-chhHHHHhhHHHHHHHHHhccCCchhheeecccccceEEE Confidence 3333344432 23456666543 344444443 3444567899999999999999999877544667776666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cc---cc--cceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhC Q lcl|Aclame:pro 404 VMASLTKAKGLEPLMATISKGFDEVVS-EF---RN--EKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGL 477 (945) Q Consensus 404 qq~~~F~~~tL~Pll~~IEqeLn~kL~-~~---~~--~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGl 477 (945) |....-++-.|.|.+..|+++|++.++ +. ++ -..|-+.||...+...-++.+-...+.+.|.+|-.-.|+.+|+ T Consensus 368 qI~dedvrlHI~P~l~~icdAlT~~~Lrp~Le~eGvDp~kYvvW~DaS~Lt~dPd~~deA~qa~drGAIt~eAlR~~lG~ 447 (639) T protein:vir:97 368 AIGDEDVQLHIKPVMDLICQAIYNDILTPLLAREGIDPTKYILWYDASGLTSDPDLSDEAVEAHDRGAITSAALRRLLNV 447 (639) T ss_pred EecccceeeecchhHHHHHHHHHhhHHHHHHHHhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhcc Confidence 666667788899999999999986543 22 22 2347899999988754445555557889999999999999999 Q ss_pred CCCCCccccccc-------------cccc---cccccchhhccCC-CCcccccccCCCCCCCCCCCCCCc---------- Q lcl|Aclame:pro 478 EPVPWGDVPFSG-------------LRNW---KPEDEQAKAQQGA-MPPQLAQAMADQPSQQGGGVDENS---------- 530 (945) Q Consensus 478 pPveGGD~~l~~-------------~n~~---~ped~~a~~~~~a-~~~~~~~~~~d~~~~~~g~~dd~e---------- 530 (945) .--+|-|..-.. .... .+......+..+- +++...+.+....+.+.+...++. T Consensus 448 ~edd~yd~~t~e~~~~~A~~~V~~~P~li~~~apl~~P~lq~~e~ptp~~a~~~a~~~~~~de~~ga~~~~ePdte~~~~ 527 (639) T protein:vir:97 448 GEDSGYDLTTLDGCREFAADVVTKNPELIAMYAPLLSSQLAGIEFPQPANAIESTREDEEDDEDSGARQQREPQTEDERS 527 (639) T ss_pred ccccCCCCCCcHHHHHHHHHHhcCCcchhhhhhhccCccceecccCCCCCCCCCCCCCCCcccccCCCCCcCCCcccccC Confidence 765544411100 0000 0000000000000 010000000000000000000000 Q ss_pred ---cccchhHHHHHHHHHHHH-hh--hhhhh------hHHHHHhhccCCccccc-------cchHHHHHHHHhhhhHHHH Q lcl|Aclame:pro 531 ---SVPSEQKNAGLEVLRNLF-KS--LDANA------SENLKQVIELTNDDNYL-------KEKELLTRVLKSVGLDSVS 591 (945) Q Consensus 531 ---~~~se~k~a~~~~lr~~~-k~--l~a~~------~~~~~~~~dl~n~~~~l-------~e~~~~~~~~~~~~~~~~~ 591 (945) .++-..+.....+.+.+. +. +.++. .+...++-+.+.-+.-. .|-++.... -+++- T Consensus 528 ~~~a~~~~~~a~~v~a~~llv~RALelAGkRr~~~~~r~~~a~~r~vp~he~H~~l~Pv~~~~~~rli~g-----wd~~l 602 (639) T protein:vir:97 528 TEEAASLNDRAAYLVAERLLVNRALDLAGKRRFKVNDAALKTKLRDVPAHEYHRVLPPVRSSEIPRLIAG-----WDTAL 602 (639) T ss_pred CccccCcCchhHHHHHHHHHHHHHHHhhcccccCCCChhhHHHhhcCChhHceeecCCCChHHHHHHHHH-----HHhHH Confidence 001001111111001111 11 11111 01111111111111100 112222111 11111 Q ss_pred HhhhhhhhcccccCCCcccccchhhHHHHHHhhccchhhhhhhhcccccchhhh Q lcl|Aclame:pro 592 EFIENNSQTDVEVSAKDILSFKYNSLVEDETIYATEKDIVLRLLGKNSLDHRET 645 (945) Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (945) +=+-+. ..-.| ... +-+.-+- -|+++|-+.-.|..-. T Consensus 603 d~~~~a-~lg~D-----~~~-----lr~~v~~------~v~~~lt~~~i~~ev~ 639 (639) T protein:vir:97 603 EDEVVA-SLGLD-----NEK-----LRNAVLA------TVRRQLTQPLIEGEVV 639 (639) T ss_pred HHHHHH-HhCCC-----HHH-----HHHHHHH------HHHHHHhhhhhccccC Confidence 100000 00000 000 0011111 1222222211111111 No 141 >protein:vir:106027 Length: 629 # NCBI annotation: gp9 # Family: family:all:2798 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654906;genbank:gi:109392362;genbank:GeneID:4157055 Probab=99.25 E-value=1.6e-10 Score=74.32 Aligned_cols=528 Identities=15% Similarity=0.057 Sum_probs=238.0 Q ss_pred eeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHH Q lcl|Aclame:pro 57 TVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPK 136 (945) Q Consensus 57 ~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~ 136 (945) ...-|.-+-++-+.=....++++..+-.+| ...+.-+--+.....+|. ..+|- .+.-.+-++..|..|++ T Consensus 1 ma~~~lrv~rrpk~~p~~r~l~aasqp~~P--~~~~~~~~~g~~~~~~WQ-~eAW~-------~~d~VgElryyvgW~~s 70 (629) T protein:vir:10 1 MAASTLRVSRRPKGSPARRSLTAASQPMEP--GRTPSRQVAGTVVRTSWQ-NEAWE-------CMDLVGELRYYVGWRAS 70 (629) T ss_pred CCccceeEEecCCCccceeeeccccCCCCc--chhhchhhhhhhhhhhhh-HHHHH-------HHHhhhhHHHHhhhhhh Confidence 122233334443332222333333332211 111000000000011222 11111 11234667778899999 Q ss_pred hhccCceEEEEeccCcccccccchhhcccHH-HHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCe--- Q lcl|Aclame:pro 137 KLTSKELEIYKHIEDKHVNYYLKRIRDARNI-LEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGN--- 212 (945) Q Consensus 137 ~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL-~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~--- 212 (945) +++.+.+..-+.+.++..+.+- +.++||- .++++.-+..-.+.---..+++.+..++-..|..|+++..-..+. T Consensus 71 s~Sr~rL~as~idpDtg~ptg~--i~ed~p~~~~v~~~v~~iagG~lGqaqLlkr~~~~ltV~GE~~i~il~~~~~~pd~ 148 (629) T protein:vir:10 71 SCSRVELIASELDPDTGKPTGG--IRDDDPDGLRFLEIVKTMAGGPLGQAQLQKRAAECLTVPGEHRICLLDQGDKNPDG 148 (629) T ss_pred hheeeeEEEeeecCCCCCCccc--cccCchhHHHHHHHHHHhcCccchHHHHHHHHHhheeccCceEEEEeecCCCCCCc Confidence 9999999888877666544332 1234442 333322121111111122467788888889999888866444443 Q ss_pred -EE-EEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 -LV-AITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFID 290 (945) Q Consensus 213 -pv-eL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aae 290 (945) +. .++.|....|. ...++.. . ..-.+|..-......|++.-..+++|. ..-.--||+.+++..+.....+. T Consensus 149 ~~r~~W~vVt~~Ei~---~kg~g~~-~-i~lpdg~~he~~~~~D~l~RvW~P~Pr--r~~e~DSpvra~l~~lrEi~r~t 221 (629) T protein:vir:10 149 SVRHNWYVVTNDEVK---NKGAGKT-D-IELPDGTIHEYSKGRDVMFRVWNPRPR--RAKEPDSPVRACLDSLREIIRTT 221 (629) T ss_pred ccccceeeecHHHhc---cccCcee-E-EEcCCCceeeeeCCCeeEEEeeCCCcc--cccCCcchhHHHHHHHHHHHHhh Confidence 22 34444444432 1111211 1 222333333333334444433334333 33467799999998887776666 Q ss_pred HHHHHHHHhCCCCceEEEEecccccccc-------ccc--------hhcc-HHHHHHHHHHHHHHhcC---cccCccccc Q lcl|Aclame:pro 291 KGNLDYYRKGGSIPEGILAIEPPSYKEG-------DIY--------PQLS-REQLESIQRQLQAIMMG---DYTQVPILS 351 (945) Q Consensus 291 e~~a~~F~nnGa~PsGILs~k~g~~~~~-------k~~--------~~LS-~Eq~erlKe~we~~~sG---~Nagkp~VL 351 (945) +...+-- ++..+-.|||..+.+..... ..+ +... ++-..-|.+.....+.. ..+-.|+++ T Consensus 222 k~i~~aa-kSRL~gnGvlflP~e~slp~~~ap~~~~~Pg~~~p~~~g~aa~d~l~~~l~q~a~aAi~De~S~aA~vPiia 300 (629) T protein:vir:10 222 KKIRNAS-KSRLIGNGVVFLPQELSLPRATAPVADNQPGAPVPIVDGVAAADELSNLLFQTAAAAVDDEDSQAALIPLLA 300 (629) T ss_pred hHhHHHH-HhHHhhCceeEeccCcccccccCCCCCCCCcccccccCCCcchHHHHHHHHHHHHhhhcCCCCccceeeeEE Confidence 6554433 34556667776665444331 111 1122 22223333333444432 234556665 Q ss_pred C------CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 352 G------GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKAKGLEPLMATISKG 424 (945) Q Consensus 352 ~------~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqe 424 (945) . ++++...+... .+.--+.+|+..+..+|....|||..| |.+.++|..+.-|....=++-.|.|.+..++++ T Consensus 301 ~vP~E~l~~ikhLkf~~e-ite~~iktR~daI~RlAmglDispErLLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~A 379 (629) T protein:vir:10 301 TVPGEHLQKIFHLKIGNE-ITEVEIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVQLHIKPVMEVLCAA 379 (629) T ss_pred eechHHhcCeeeeeecCc-hhHHHHhhHHHHHHHHHhccCCChhheeeccCCccceeeEEecccceeeecchHHHHHHHH Confidence 3 23444444433 334557899999999999999999866 555677776666666666788899999999999 Q ss_pred HHHhhc-cc---cc--cceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccc-cc------ Q lcl|Aclame:pro 425 FDEVVS-EF---RN--EKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSG-LR------ 491 (945) Q Consensus 425 Ln~kL~-~~---~~--~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~-~n------ 491 (945) +++.++ +. ++ ...|.+.||...+...-++.+-...+.+.|.+|-...|+.+|+.--+|-+.--.. .. T Consensus 380 it~~~Lrp~L~~eGiDp~~Yvvw~DaS~Lt~dPd~~deA~~a~drGaIt~eAlRr~lG~~~dd~y~~~t~~~~q~~A~~~ 459 (629) T protein:vir:10 380 IYREVLVATLRAEGIDPDRYVLWYDASGLTVDPDKTDEATAAKEQGAITHEAYRRYLGLADEDGYDLETLEGAQAWARDA 459 (629) T ss_pred HHhHHHHHHHHHhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhccccccCCCcCCcHHHHHHHHHH Confidence 986443 22 22 2358899999988744444555557889999999999999999765553311000 00 Q ss_pred ---cccccccch-h-----hccCCCCcccc---------cccCCCCCCCCCCCCCCcc-ccchhHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 492 ---NWKPEDEQA-K-----AQQGAMPPQLA---------QAMADQPSQQGGGVDENSS-VPSEQKNAGLEVLRNLFKSLD 552 (945) Q Consensus 492 ---~~~ped~~a-~-----~~~~a~~~~~~---------~~~~d~~~~~~g~~dd~e~-~~se~k~a~~~~lr~~~k~l~ 552 (945) ...+....+ . ++-+-.+++.+ ...++.+++.++..++.+. .......++..+.+.+.-+.= T Consensus 460 v~~~P~Li~~~apll~~~l~~i~~P~p~~a~~~~~~~~~~~E~~~~~~e~~~e~dA~~a~~~~~~aa~~~A~rllv~RAL 539 (629) T protein:vir:10 460 IVADPSLIKVLAPLLTDELAEIDWPEPPAALPPGEDDQADEEQDTTGSEPSTEDDAEAAARISSVADMVLAERLLTVRAL 539 (629) T ss_pred hcCCCchhhhhhhhcCCccccccccCCCCcCCCCCcccCccccCCCCCCcCCCcchhhcccCCchhhHHHHHHHHHHHHH Confidence 000000000 0 00000000000 0000001111111111111 111112222222221111100 Q ss_pred hhhhHH---------HHHhhccCCcc--ccc-----cchHH----HHHHHH-----hhhhHH------HHH-----hhhh Q lcl|Aclame:pro 553 ANASEN---------LKQVIELTNDD--NYL-----KEKEL----LTRVLK-----SVGLDS------VSE-----FIEN 596 (945) Q Consensus 553 a~~~~~---------~~~~~dl~n~~--~~l-----~e~~~----~~~~~~-----~~~~~~------~~~-----~~~~ 596 (945) ..+.+. ..++.+.+.-+ +.+ .|-++ |-+.|+ +.|.|. ++. +=++ T Consensus 540 elAGkRl~~~rdR~~~ar~~~vp~he~h~~l~Pv~~~~v~rli~gwd~~l~~~~~a~lg~D~~~~~~~~sav~~~v~~~l 619 (629) T protein:vir:10 540 GLAGKRRVNTNDRAQKARLAGIAPHDYHRVMGPVADADIPRLIAGWDEGLEEEALALLGVDSRRTEALRSAVRAQIRREL 619 (629) T ss_pred HHccccccCCCchhhHHHhhcCChhhceeecCCCChhHHHHHHHhhhhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHh Confidence 001111 11122221111 000 01111 111111 112211 000 0122 Q ss_pred hhhc-ccccC Q lcl|Aclame:pro 597 NSQT-DVEVS 605 (945) Q Consensus 597 ~~~~-~~~~~ 605 (945) -..| |.+|. T Consensus 620 t~~~~~~ev~ 629 (629) T protein:vir:10 620 TMPVVDAEVC 629 (629) T ss_pred hhhhhccccC Confidence 2233 55555 No 142 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=99.23 E-value=2e-10 Score=73.78 Aligned_cols=557 Identities=12% Similarity=0.084 Sum_probs=226.5 Q ss_pred Cch--h---hhHh---hhheeccccccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeee Q lcl|Aclame:pro 1 MKS--L---ENII---KGFIVNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLK 72 (945) Q Consensus 1 ~~~--~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~k 72 (945) .|. | ..|. ..--|.|.-.+|-.... +|. -|--.|--.-| |+ +.|. T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~-~~---------------~~~~ 74 (698) T protein:vir:10 22 AKAAALAAAATIATATAAQPVPADMGRRGALNA-----LDA------APVAEPSPSLR-LA---------------RQFE 74 (698) T ss_pred hhhhhhhhhhhhhhhccccccchhhcccccccc-----ccc------ccccCCCcccc-cc---------------ccce Confidence 111 0 0010 00111122122211110 000 01111110000 11 1111 Q ss_pred cccc-ccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 73 KEKI-IVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIED 151 (945) Q Consensus 73 K~K~-i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrted 151 (945) -.-. -+|+..+.-...+.......+++ +|....+|.++..+...+ +.+-+++|+..|++.+..- |.-. +.. T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~F~Gy~~la~la-Q~~eyr~~~~~ia~e~~R~-w~~~--~~~ 146 (698) T protein:vir:10 75 VDVSNYTPRERRAASYALDFNGTSMDAL----SFVTSSGFPGFPTLVLLA-QLPEYRAMHEVLADECIRT-WGEA--IGG 146 (698) T ss_pred eccccCCccccchhhhhhcccccccccc----hhhhccCcchHHHHHHHh-hccchhhHHHHHHHHhhcc-ccee--ccc Confidence 0111 12222211111111101111111 355555666777776654 8899999999999988654 4211 111 Q ss_pred cccc---------cccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC------------- Q lcl|Aclame:pro 152 KHVN---------YYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE------------- 209 (945) Q Consensus 152 g~ee---------~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~------------- 209 (945) ..+. ..+....+...+.+| +..+.....|..+...+.++.+.+|...++.+... T Consensus 147 ~~e~~~~~g~~~~~~~~~~~d~dqi~~L----~~e~erl~V~~~l~eai~~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~ 222 (698) T protein:vir:10 147 TKEKADTSGLAAGGNAASTSDGDQLKQI----NDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPY 222 (698) T ss_pred cchhhhhhcccccccccccccHHHHHHH----HHHHHHHHHHHHHHHHHHhcccccceEEEEEeecCccccccccccccc Confidence 0000 000010111122222 22344567777777777777776666655544331 Q ss_pred ---CCeEEEEEEcCCceeEEEEcC----CC---ceEEEEEEeeCCceeeeecccceeeeeeccCCCCccC---cccccHH Q lcl|Aclame:pro 210 ---QGNLVAITPVDGTTIKPILSE----DT---GIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMY---GYSLPPI 276 (945) Q Consensus 210 ---~G~pveL~pLdPs~Vtv~~d~----dG---~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~---GyGlSPI 276 (945) .|...+|.+++|.+|++.... -+ +.+..|. . .|+ .+.++-++.+...+.|+.... ..|+|-. T Consensus 223 ~I~kGslKGL~ViDp~~vtP~~~n~~dP~spdfgkP~~y~-V-~G~---~IH~SRL~~~vg~pvpd~LKp~y~f~G~Sv~ 297 (698) T protein:vir:10 223 TVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW-M-IGS---EVHATRLHTIVSRPVGDMLKPTYSFAGISMT 297 (698) T ss_pred cccCccceeeeeecccccccchhhhccchhhccCCCceEE-E-ecc---eecceeEEEecCCCchhhhcchhccCCccHH Confidence 345667999999999875321 11 1121222 2 232 233333433443333443222 2499999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHH--HHHHHhcCcccCcccccC-C Q lcl|Aclame:pro 277 EILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQR--QLQAIMMGDYTQVPILSG-G 353 (945) Q Consensus 277 ~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe--~we~~~sG~Nagkp~VL~-~ 353 (945) +.+.+.+.....+.......... ....++. +. ....++.....++.. ++-+.+. +|.|. .+++ + T Consensus 298 q~~~e~V~~~~rT~~~v~~Li~~--~~~~~l~-~d--------la~aL~~g~~~~l~~R~eli~~~R-sn~G~-~llDk~ 364 (698) T protein:vir:10 298 QLAMPYIDNWLRTRQSVSDIVKQ--FSVSGIL-MD--------LAQALTPGANVDLSMRAELINRYR-DNRNI-LFLDKA 364 (698) T ss_pred HHHHHHHHHHHHHhhhHHHHHHH--hhHHHHH-HH--------HHHhcCChhhHHHHHHHHHHHHhc-Cccce-EEEecC Confidence 99999988877776666655432 1212221 00 011112222222332 2223333 34444 4556 5 Q ss_pred CceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHH Q lcl|Aclame:pro 354 KFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKA-------KGLEPLMATISKGF 425 (945) Q Consensus 354 G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~-------~tL~Pll~~IEqeL 425 (945) +-+|.+.+.+....+ +......+.||.+-+||...| |.+..|-.++.|...+.||. .-|+|.++++-+.+ T Consensus 365 ~Eefeq~st~lSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii 442 (698) T protein:vir:10 365 TEEFFQFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMI 442 (698) T ss_pred CcceEEEecCcCCHH--HHHHHHHHHHHhhhcCchhhhhccCCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 678888776666555 566677789999999997766 55555545666666666654 35778777777666 Q ss_pred HHhhccccccceeEEEeechhhcCHHHHHHH-------HHHHHhCCCcCHHHHHHHHhCCCCC-------Cccccccccc Q lcl|Aclame:pro 426 DEVVSEFRNEKDIKLWFKEDDLEKERDWWNI-------IQGQLNTGFRSINEARMEKGLEPVP-------WGDVPFSGLR 491 (945) Q Consensus 426 n~kL~~~~~~~g~~f~fd~~~l~D~kerae~-------~~~~v~~GimT~NEaRe~lGlpPve-------GGD~~l~~~n 491 (945) -+..+... ...+.|+|+.+..++.+++|++ ...+++.|+++++|+|.++.-+|-. -.|.+..+.. T Consensus 443 ~rS~~G~i-dp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p~~~~~ 521 (698) T protein:vir:10 443 QLSLFGAV-DPSIKWQWNALRELDDLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGAPAD 521 (698) T ss_pred HHHhcCCC-CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccCCcccCCCCCC Confidence 55443332 2357889999888877666654 5557789999999999998776531 1122211111 Q ss_pred cccccccchhhccCCCCcccccccCCCCCCCCCCCCC--------Ccccc------------------------------ Q lcl|Aclame:pro 492 NWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDE--------NSSVP------------------------------ 533 (945) Q Consensus 492 ~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd--------~e~~~------------------------------ 533 (945) +..... ..+-+.+.........+.+.+.-.|.++. +..++ T Consensus 522 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~giv~~~g~~vLL~~r~~g 599 (698) T protein:vir:10 522 DDIDGV--LTYVQRMAEGGDTGAPTAPGGARAGATAPPAAANVNANANPREAGAQDAAMRAAGIVFRAGDKVLLMKRPAG 599 (698) T ss_pred CcchHH--HhhhcCCcCCCCcccccccccccCCCCCCcccccccCCCCccccCcccceeeEEEEEEEcCCeEEEEEecCC Confidence 110000 00000000000000000000000000000 00000 Q ss_pred ---------chhHHHHHHHHHHHHhhhhhhhhHHHHHhhccCCcccccc----chHHHHHHHHhhhhHHHHHhhhhhhhc Q lcl|Aclame:pro 534 ---------SEQKNAGLEVLRNLFKSLDANASENLKQVIELTNDDNYLK----EKELLTRVLKSVGLDSVSEFIENNSQT 600 (945) Q Consensus 534 ---------se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~----e~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (945) +.++.....+.|.+... .+-..+.+- ..+.+-+...+ +-.-..-.+.++ -+-.+||+ T Consensus 600 ~W~lPgG~ie~GEt~~~aa~RE~~EE-tG~~~~~~l--~~~g~~de~~~~f~ad~~p~~~~l~dE--h~~~~Wfd----- 669 (698) T protein:vir:10 600 DWGLPAGKVEDGETPEEAARRETLEE-TGHAGDYVL--APLGKYDEFFHAFVADVNPFDVELNDE--HTAFDWFD----- 669 (698) T ss_pred CcccCccccCCCCCHHHHHHHHHHhh-cccccchhh--hcccccceEEEEEEEEecCcceeeccc--cccccccC----- Confidence 01111111111111111 111110000 00000000000 000000000000 00001111 Q ss_pred ccccCCCcccccchhhHHHHHHhhccchhhhhhhhcccccchhhhh Q lcl|Aclame:pro 601 DVEVSAKDILSFKYNSLVEDETIYATEKDIVLRLLGKNSLDHRETF 646 (945) Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (945) +|- -+.-++-....+++ +|.- .|||+|.- T Consensus 670 -pde-LP~pL~~~~~~ii~----~A~k-----------ald~~~~~ 698 (698) T protein:vir:10 670 -PDE-LPHPLHRDTAAIVD----AACK-----------ALDRLERA 698 (698) T ss_pred -hHh-cccccCHHHHHHHH----HHHH-----------HHhhhcCC Confidence 110 11222222222221 1110 23333333 No 143 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=99.22 E-value=2.9e-10 Score=72.84 Aligned_cols=558 Identities=12% Similarity=0.075 Sum_probs=225.7 Q ss_pred CchhhhHhhhhe--------eccccccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeee Q lcl|Aclame:pro 1 MKSLENIIKGFI--------VNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLK 72 (945) Q Consensus 1 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~k 72 (945) .|.-.-....-| |.|.-.+|-.... +|. -|--.|--.-| |+ +.|. T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~-~~---------------~~~~ 74 (695) T protein:vir:78 22 AKAAALAAAATIATATAAQPVPADMGRRGALNA-----LDA------APVAEPSPSLR-LA---------------RQFE 74 (695) T ss_pred hhhhhhhhhhhhhhhccccccchhhcccccccc-----ccc------ccccCCCcccc-cc---------------eece Confidence 111000001111 1122122211110 000 11111111000 11 1111 Q ss_pred cccc-ccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 73 KEKI-IVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIED 151 (945) Q Consensus 73 K~K~-i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrted 151 (945) -.-. -+|+..+.....+.......+++ +|....+|.++..+...+ +.+-+++|+..|++.+..- |.-. +.. T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~F~Gy~~la~la-Q~~eyr~~~~~ia~e~~R~-w~~~--~~~ 146 (695) T protein:vir:78 75 VDVSNYTPRERRAASYALDFNGTSMDAL----SFVTSSGFPGFPTLVLLA-QLPEYRAMHEVLADECIRT-WGEA--IGG 146 (695) T ss_pred eccccCCccccchhhhhhcccccccccc----hhhhccCcchHHHHHHHh-hccchhhHHHHHHHHhhcc-ccee--ccc Confidence 1111 12222221111111101111111 355555667777776654 8899999999999988654 4211 111 Q ss_pred cccc---------cccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec-------------- Q lcl|Aclame:pro 152 KHVN---------YYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD-------------- 208 (945) Q Consensus 152 g~ee---------~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird-------------- 208 (945) ..+. ..+....+...+.+| +..+.....|+.+...+.++.+.+|...++.+.. T Consensus 147 ~~e~~~~~g~~~~~~~~~~~d~dqi~~L----~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~ 222 (695) T protein:vir:78 147 TKEKADTSGLAAGGNAASTSDGDQLKQI----NDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPY 222 (695) T ss_pred cchhhhhhcccccccccccccHHHHHHH----HHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCccccccccccccc Confidence 0000 000011111122222 2234456777777777777777666655554433 Q ss_pred --CCCeEEEEEEcCCceeEEEEcC----CC---ceEEEEEEeeCCceeeeecccceeeeeeccCCCCc---cCcccccHH Q lcl|Aclame:pro 209 --EQGNLVAITPVDGTTIKPILSE----DT---GIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVY---MYGYSLPPI 276 (945) Q Consensus 209 --~~G~pveL~pLdPs~Vtv~~d~----dG---~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~---~~GyGlSPI 276 (945) ..|...+|.+++|.+|++.... -+ +.+..|. . .|. .+.++-++.+...+.|+.. +...|+|-. T Consensus 223 ~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~-V-~G~---kIH~SRL~~f~g~plPd~LKp~y~~~GiSv~ 297 (695) T protein:vir:78 223 TVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW-M-IGT---EVHATRLHTIVSRPVGDMLKPTYSFAGISMT 297 (695) T ss_pred cccCcceeeeEeecccccccchhhhccchhhccCCCceEE-E-ece---EEeeeeEEEecCCCchhhhhcccccCcccHH Confidence 1345667999999999875421 11 1122222 2 232 2333334334433444332 123489999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHH--HHHHHhcCcccCcccccC-C Q lcl|Aclame:pro 277 EILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQR--QLQAIMMGDYTQVPILSG-G 353 (945) Q Consensus 277 ~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe--~we~~~sG~Nagkp~VL~-~ 353 (945) +.+.+.+.....+.......... ....++. +. ..+.+....-..+.. ++-+.+. +|.|. .+++ + T Consensus 298 q~~~e~V~~~~rT~~~v~~Li~~--~~v~~lk-~d--------la~~L~~g~~~~l~~R~eli~~~R-sn~G~-~llDk~ 364 (695) T protein:vir:78 298 QLAMPYIDNWLRTRQSVSDIVKQ--FSVSGIL-MD--------LAQALMPGANVDLSMRAELINRYR-DNRNI-LFLDKA 364 (695) T ss_pred HHHHHHHHHHHHHHhHHHHHHHh--hhhHHHH-HH--------HHHhhcChhHHHHHHHHHHHHHhc-Cccce-EEEecC Confidence 99998888877777666665532 2222221 10 001111112222222 2223333 34444 4556 4 Q ss_pred CceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHH Q lcl|Aclame:pro 354 KFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKA-------KGLEPLMATISKGF 425 (945) Q Consensus 354 G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~-------~tL~Pll~~IEqeL 425 (945) +-+|.+.+.+....+ +......+.||.+-+||...| |.+..|-.++.|...+.||. .-|+|.++.+-+.+ T Consensus 365 ~Eefeq~stslSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii 442 (695) T protein:vir:78 365 TEEFFQFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMI 442 (695) T ss_pred CcceEEEecccCCHH--HHHHHHHHHHHhhhcCchhhhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 678887776665554 555667788999999997766 55555545666666666654 45778777776666 Q ss_pred HHhhccccccceeEEEeechhhcCHHHHHHH-------HHHHHhCCCcCHHHHHHHHhCCCCC-------Cccccccccc Q lcl|Aclame:pro 426 DEVVSEFRNEKDIKLWFKEDDLEKERDWWNI-------IQGQLNTGFRSINEARMEKGLEPVP-------WGDVPFSGLR 491 (945) Q Consensus 426 n~kL~~~~~~~g~~f~fd~~~l~D~kerae~-------~~~~v~~GimT~NEaRe~lGlpPve-------GGD~~l~~~n 491 (945) -+..+... ...+.|+|+.+..++.+++|++ ...+++.|+++++|+|.++.-+|-. -.|.+-.+.. T Consensus 443 ~rS~~G~i-dpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~ 521 (695) T protein:vir:78 443 QLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPAD 521 (695) T ss_pred HHHhcCCC-CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCcc Confidence 55443332 2357889998888876666554 5567889999999999998876532 1222221111 Q ss_pred cc-----cccccchhhccCCCCcccccccCCCCCCCCC---CCCC--Ccccc---------------------------- Q lcl|Aclame:pro 492 NW-----KPEDEQAKAQQGAMPPQLAQAMADQPSQQGG---GVDE--NSSVP---------------------------- 533 (945) Q Consensus 492 ~~-----~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g---~~dd--~e~~~---------------------------- 533 (945) +. +..+....+ .+..++..+.++...++.... ..++ ...++ T Consensus 522 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ag~~~~~~~aag~v~~~~g~vLl~kr~~g~W~l 600 (695) T protein:vir:78 522 DDIDGVLTYVQRLAEG-GDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGL 600 (695) T ss_pred chhhhhHhhhcCcccc-cccCCCCCCCCCCCCCCceeeeeccccccccCCCCcccceeEEEEEeCCEEEEEEecCCCccC Confidence 10 000000000 001111111111111000000 0000 00000 Q ss_pred -----chhHHHHHHHHHHHHhhhhhhhhHHHHHhhccCCcccccc----chHHHHHHHHhhhhHHHHHhhhhhhhccccc Q lcl|Aclame:pro 534 -----SEQKNAGLEVLRNLFKSLDANASENLKQVIELTNDDNYLK----EKELLTRVLKSVGLDSVSEFIENNSQTDVEV 604 (945) Q Consensus 534 -----se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (945) +..+.....+.|.+.....-+.. .+...+...+-..+ .-+-.. ++-..-.+-+.|+. +|- T Consensus 601 PgG~vE~gEt~~~aa~RE~~EEtGl~~~---~el~~~g~~~~~~~~f~~~~e~~~--~~l~dEh~~~~Wf~------pde 669 (695) T protein:vir:78 601 PAGKVEGNETPEEAARRETREETGYDHD---GELVPLGKFDGFFHAFVAHLEPFD--VELNDEHTAFDWFN------PDE 669 (695) T ss_pred CccccCCCCCHHHHHHHHHHHHhCCccc---cceeeeeeecceEEEEEEeecccC--cccCchhhhcccCC------hhh Confidence 00000011111111111100000 00000000000000 000000 00000001111111 000 Q ss_pred CCCcccccchhhHHHHHHhhccchhhhhhhhcccccchhhhh Q lcl|Aclame:pro 605 SAKDILSFKYNSLVEDETIYATEKDIVLRLLGKNSLDHRETF 646 (945) Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (945) -|..|--..-.++ ++|+- .|||++.- T Consensus 670 -LP~pL~~~~aavl----~aA~k-----------~ld~~~~~ 695 (695) T protein:vir:78 670 -LPHPLHRDTAAIV----DAACK-----------ALDRLERA 695 (695) T ss_pred -cCcccchHHHHHH----HHHHH-----------HHHhhcCC Confidence 0011111122222 22221 23333333 No 144 >protein:vir:106491 Length: 646 # NCBI annotation: Pas4 # Family: family:all:2798 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024790;genbank:gi:48697405;genbank:GeneID:2846148 Probab=99.21 E-value=3.1e-10 Score=72.69 Aligned_cols=571 Identities=12% Similarity=0.039 Sum_probs=258.3 Q ss_pred ceeeeccccccccccccCCCCCc--------cc------ccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHH Q lcl|Aclame:pro 68 NQVLKKEKIIVPYNHQEPPFKFN--------LF------EYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSE 133 (945) Q Consensus 68 n~l~kK~K~i~p~~~r~pp~~f~--------L~------~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~i 133 (945) -- +-+||. +|+.+|. |. +.......- ++-.++.-. -.-.-+.+...+-++..|.. T Consensus 1 ~~-~~rPk~-------~p~~p~~~~~arrr~LtaAsa~l~~~~~~~~k--t~~~~~~~W-Q~eAW~~~d~vpELry~vgW 69 (646) T protein:vir:10 1 MA-LLKPKS-------APPEPFGAEVARRIALAGATAQVDLGASSSWK--TWKFGNKDW-QTEGWRLYDIIPEHHFLAGR 69 (646) T ss_pred Cc-ccCCCC-------CCCCcccccccchhhhhhccccccCCCcceee--cCCCcchhh-hHHHHHHHhhhhhHhhHhhh Confidence 11 223442 1222111 00 000000000 111111000 00001122234668888999 Q ss_pred HHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEE---EecCC Q lcl|Aclame:pro 134 IPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVK---IRDEQ 210 (945) Q Consensus 134 IA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~i---ird~~ 210 (945) |+++++++.+.+-+.+..|..... ..++++.++-..|=..... -..+++.+..++-+.|..|++. ..... T Consensus 70 ~~~a~SR~rL~aseiddtG~~tg~----v~~~~v~~iv~~~~Gg~~g---Q~qlLkr~~~~ltV~GE~wiv~~~~~~~~~ 142 (646) T protein:vir:10 70 IGDSVAQARLYVTEVDDTGEETGE----VQDERIKRLAAVPLGTGSQ---RDDNLRLAGLDLAVGGECWIVGEGAATSPE 142 (646) T ss_pred hhhhhceeeeeeeeecCCCCCcCc----cchHHHHHHhhhhccchhh---HHHHHHHHHhheecccceEEeeccccCCCC Confidence 999999999988887755554332 3345666665544332222 2357888888988888888863 11111 Q ss_pred CeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 211 GNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFID 290 (945) Q Consensus 211 G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aae 290 (945) +---.++++..+.|.. ..++...+-.....|.........|++.-..++ .....-+--||+.+++..+.....+. T Consensus 143 ~~~~~W~vvt~~Ev~~---tg~~~~i~~p~~~~g~~~v~~~~~d~lvRiW~P--~Prr~~epDSpvra~l~~l~Ei~~lt 217 (646) T protein:vir:10 143 AAEGSWFVVTGSAISR---TGDEIAVRRPQQRGGSKLVLVDGQDILIRCWRP--HPNDTDQADSFTRSAIVPLREIELLT 217 (646) T ss_pred CCccceeeecHHHhcc---CCCeeeeecCccCCCCCcceecCCceEEEEecC--CcccccCCcchhHHHHHHHHHHHHhh Confidence 1122466666666622 122222222222224455555666664423333 33334467799999998888777666 Q ss_pred HHHHHHHHhCCCCceEEEEeccccccccccchhccHHHH-HHHHHHHHHHhcC---cccCcccccCCC---c----eeee Q lcl|Aclame:pro 291 KGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQL-ESIQRQLQAIMMG---DYTQVPILSGGK---F----TWID 359 (945) Q Consensus 291 e~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~-erlKe~we~~~sG---~Nagkp~VL~~G---~----k~~p 359 (945) +...+-. ++..+-.|||.++.+.............+++ .-|.+.....+.. ..+-.|+++... + +.+. T Consensus 218 ~~I~aaa-kSRL~GnGvLfvP~e~s~p~~~~~~a~~~~l~~~l~qaa~tAi~De~S~aA~vPiia~~P~E~i~~~~~ik~ 296 (646) T protein:vir:10 218 KREFAEL-DSRLTGAGIMFLPEGVDFPRGEEDPAGLAGFMAYLQRAAAASMADQSRASAMVPIMATIPNEMMEHLDKIKP 296 (646) T ss_pred hHhHHHH-HHHHhcCceeeeccccccCCCCCCCcchhHHHHHHHHHHHhhhcCCCCccceeeeEEeeChHHHhhhhccee Confidence 6655543 4556667888888766555433332332222 2233333333332 234567766431 1 2232 Q ss_pred ccC-ChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc---cc Q lcl|Aclame:pro 360 FKG-KRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVS-EF---RN 434 (945) Q Consensus 360 Ls~-sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~-~~---~~ 434 (945) +.. +..+.--+.+|+..+..+|....|||..|=...++|..+.-|....-++ .|.|.+..|+++|++.++ +. ++ T Consensus 297 l~f~~eite~aiktR~daI~RlA~glDIppE~LLGlgd~NHWtAWqI~de~vr-HI~P~l~~ic~AlT~~~Lrp~Le~eG 375 (646) T protein:vir:10 297 LTFWSELSAEITPMKDKAIARLASSAEIPGEVLTGIGDANHWTAWLISDEGIR-WIRGYLGLIADALTRGFLRRALESMG 375 (646) T ss_pred eccCchhhHHHhhhHHHHHHHHHhccCCchhheeeccccceeeeeeeccccch-hhhhHHHHHHHHHHhhHHHHHHHHcC Confidence 332 3344456789999999999999999987744446776666565556667 699999999999986443 22 22 Q ss_pred c---ceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccc--cccc---------cccc--cccc- Q lcl|Aclame:pro 435 E---KDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDV--PFSG---------LRNW--KPED- 497 (945) Q Consensus 435 ~---~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~--~l~~---------~n~~--~ped- 497 (945) . ..|-+.||...+...-++.+-...+.+.|.+|-...|+.+|+.--++.+. .... .... ++.. T Consensus 376 i~dp~kyvvW~DaS~Lt~~pd~~deA~qa~drGAIt~eAlrk~~Gf~~dd~pt~~E~~~~~~~~~v~~~P~Lil~P~~qa 455 (646) T protein:vir:10 376 VTNPERYAFAFDTSTLASKPNRLDEAIQLHERNLIKDEEVVKAGAFSVDQMPTVQERAVQILLGLVKTQPDLILDPAIQA 455 (646) T ss_pred CCChhHeEEeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhcccccccCChHHHHHHHHHHHhcCCccccccchhhc Confidence 2 35789999998875445555555788999999999999999974433322 0000 0000 0000 Q ss_pred -cchhhccC-CCCccccc-ccC-CCCCCCCCCCCCCccccch---hHHHHHHHHHHHHhhhhhhhhHHHHHhhccCCcc- Q lcl|Aclame:pro 498 -EQAKAQQG-AMPPQLAQ-AMA-DQPSQQGGGVDENSSVPSE---QKNAGLEVLRNLFKSLDANASENLKQVIELTNDD- 569 (945) Q Consensus 498 -~~a~~~~~-a~~~~~~~-~~~-d~~~~~~g~~dd~e~~~se---~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~- 569 (945) .+..+.+. ..+++..+ ... +.+.+..+...+++++... +..+... .+....+...+...-++..+ T Consensus 456 ~~~~P~~~~~~lpp~~~~~~dg~~~~~e~~g~~~~~E~~~~pda~~~~a~~~-------~~~~r~~~~~~~~~~~~~p~a 528 (646) T protein:vir:10 456 ALGLPAVQSVGLPPTAAQRTDGDLDDDESEGAPNGGEAPDQPDADEARAITA-------ALDRRIALAARPVLALPSPEA 528 (646) T ss_pred cccCCCcCccccCCcccccccCCCCChhhcCCCCCCccCCCCCCCccccccc-------cccccchhhhhhhhccccchh Confidence 00000000 00000000 000 0011111111111111110 1111110 11111111111111122221 Q ss_pred -ccccchHHHHHHHHhhhhHHHHHhhhhhhhcc---cccCCCccc----ccchhhHHHHHHh-hccchhhhhhhhccccc Q lcl|Aclame:pro 570 -NYLKEKELLTRVLKSVGLDSVSEFIENNSQTD---VEVSAKDIL----SFKYNSLVEDETI-YATEKDIVLRLLGKNSL 640 (945) Q Consensus 570 -~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 640 (945) ...-.+-.+.+.|+--|.-..+ ++.+. .++.+-+.- -+.=++..+.+.- |=+... |+-.||-+.- T Consensus 529 ~~~aav~l~v~RAL~lAG~Rlrt-----~~~~~a~~r~vp~he~h~~l~Pv~~~~~~rl~~G~wd~~~~-v~~~lg~D~~ 602 (646) T protein:vir:10 529 VFNASAKLMILRALELAGGRLTT-----PAERRGRWSDVPRHELHHHVGPITPDKARRVTEGAWNHVAV-AAADLGVDAG 602 (646) T ss_pred HHHHHHHHHHHHHHHhccccccC-----chhhhHHhhcCChhhceeecCCCChhhHHHHHhcccccHHH-HHHhcCCChH Confidence 1112333444555444443321 11111 111111110 0111122222222 333333 3334454333 Q ss_pred chhhh-----hhhhhhccccccccceeeecCccceeEEeccccccch---hhHHHH Q lcl|Aclame:pro 641 DHRET-----FGLIATHFDCHTVPKVEFYSDKDKRYVFANLSVCSPI---NSVEKF 688 (945) Q Consensus 641 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 688 (945) --|++ .+++.--...|. -.+++.||.-..- -.||.- T Consensus 603 ~lr~~v~~~Vr~~lt~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 646 (646) T protein:vir:10 603 ELERVLSTYVLELLTRGLRHHD------------DMLYATLSMPNQGRGLLEVEAA 646 (646) T ss_pred HHHHHHHHHHHHHHhcCCCccc------------cceeeeecCcccCccceeeccC Confidence 33332 233332222221 1233444432110 011111 No 145 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=99.20 E-value=5.1e-10 Score=71.52 Aligned_cols=562 Identities=13% Similarity=0.068 Sum_probs=230.2 Q ss_pred chhhhHhhhheeccccccCcccccc------------------c-hhchhhhhcccCCCCcchhhhhhhhhccceeeeee Q lcl|Aclame:pro 2 KSLENIIKGFIVNANEQKRPSFSSN------------------I-KANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSI 62 (945) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (945) -|-.|.-|.- --|...+||..... | -+.+-+|..-+--|-..|.-+-| |+ T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------- 69 (694) T protein:vir:10 1 MSRRNAKKRT-QLARTGRRPEVAKAAALAAAATIATAAAQPVPADFARRGALNALDAAPVAEPSPSLR-LA--------- 69 (694) T ss_pred CCccchhhHH-HHhhcCCCcchhhhhhhhhhhhhhhcCCCcccCCccccccchhhcccccCCCCcchh-hh--------- Confidence 1111111110 01122234432110 0 01111222112222222221111 00 Q ss_pred eeeecceeeecccc-ccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 63 IIFRKNQVLKKEKI-IVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 63 ~~~k~n~l~kK~K~-i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) ++|.-.-. -+|+..+.....+.. .+.+-+ .-+|....+|.++..+...+ +.+-+++|+..|++.+..- T Consensus 70 ------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~l~~~~~~~F~Gy~~la~la-Q~~eyr~~~~~ia~e~~R~ 138 (694) T protein:vir:10 70 ------RQFEVDVSNYTPRERRAASYALDF-NGTSMD---ALSFVTSSGFPGFPTLVLLA-QLPEYRAMHEVLADECIRT 138 (694) T ss_pred ------hhccccccCCCccccchhhhhhcc-Cccccc---chhhhhccCcchHHHHHHHh-hccchhhHHHHHHHHhhcc Confidence 11110100 011111111111110 011111 11344455666777766654 8899999999999988654 Q ss_pred ceEEEEeccCcccc---------cccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC--- Q lcl|Aclame:pro 142 ELEIYKHIEDKHVN---------YYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE--- 209 (945) Q Consensus 142 P~~VyRrtedg~ee---------~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~--- 209 (945) |.-. +....+. ..+....+...+.+| +..+.....|+.+...+.++.+.+|...++.+... T Consensus 139 -w~~~--~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L----~~e~erl~V~~~l~eaik~aRlfGGa~~~i~I~gdd~~ 211 (694) T protein:vir:10 139 -WGEA--IGGTKEKADTSGLAAGGNAASTSDGDQLKQI----NDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQI 211 (694) T ss_pred -ccee--ccccchhhhhhcccccccccccccHHHHHHH----HHHHHHHHHHHHHHHHHHhhccccceEEEEEeecCccc Confidence 4211 1110000 000011111122222 22344567777777777777776666555544331 Q ss_pred -------------CCeEEEEEEcCCceeEEEEcC----CC---ceEEEEEEeeCCceeeeecccceeeeeeccCCCCc-- Q lcl|Aclame:pro 210 -------------QGNLVAITPVDGTTIKPILSE----DT---GIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVY-- 267 (945) Q Consensus 210 -------------~G~pveL~pLdPs~Vtv~~d~----dG---~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~-- 267 (945) .|...+|.+++|.+|++.... -+ +.+..|. . .|. .+.++-++.+...+.|+.. T Consensus 212 l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~-V-~G~---~IH~SRL~~f~g~plPd~LKp 286 (694) T protein:vir:10 212 MDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW-M-IGT---EVHATRLHTIVSRPVGDMLKP 286 (694) T ss_pred cccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEE-E-ece---EEeeeeEEEecCCCchhhhhc Confidence 345667999999999875421 11 1122222 2 232 2333334334433434332 Q ss_pred -cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHH--HHHHHhcCcc Q lcl|Aclame:pro 268 -MYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQR--QLQAIMMGDY 344 (945) Q Consensus 268 -~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe--~we~~~sG~N 344 (945) +...|+|-.+.+.+.+.....+.......... ....++. +. ..+.+....-..+.. ++-+.+. +| T Consensus 287 ~y~~~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~--~~v~~lk-~d--------la~~L~~g~~~~l~~R~eli~~~R-sn 354 (694) T protein:vir:10 287 TYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ--FSVSGIL-MD--------LAQALMPGANVDLSMRAELINRYR-DN 354 (694) T ss_pred ccccCcccHHHHHHHHHHHHHHHHhHHHHHHHh--hhhHHHH-HH--------HHHhhcChhHHHHHHHHHHHHHhc-Cc Confidence 12348999999998888877776666655532 2222221 10 001111112222222 2223333 34 Q ss_pred cCcccccC-CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHHHH-------HHHH Q lcl|Aclame:pro 345 TQVPILSG-GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKA-------KGLE 415 (945) Q Consensus 345 agkp~VL~-~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~-------~tL~ 415 (945) .|. .+++ ++-+|.+.+.+....+ +......+.||.+-|||...| |.+..|-.++.|...+.||. .-|+ T Consensus 355 ~G~-~llDk~~Eefeq~stslSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~ 431 (694) T protein:vir:10 355 RNI-LFLDKATEEFFQFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQ 431 (694) T ss_pred cce-EEEecCCcceEEEecccCCHH--HHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHH Confidence 444 4556 4678887776665554 555667788999999997766 55555545666666666654 4577 Q ss_pred HHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHH-------HHHHHHhCCCcCHHHHHHHHhCCCCC------- Q lcl|Aclame:pro 416 PLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWN-------IIQGQLNTGFRSINEARMEKGLEPVP------- 481 (945) Q Consensus 416 Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae-------~~~~~v~~GimT~NEaRe~lGlpPve------- 481 (945) |.++.+-+.+-+..+... ...+.|+|+.+..++.+++|+ ....+++.|+++++|+|.++.-+|-. T Consensus 432 p~L~rl~~ii~rS~~G~i-dp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D 510 (694) T protein:vir:10 432 QLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 510 (694) T ss_pred HHHHHHHHHHHHHhcCCC-CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccc Confidence 877777666655443332 235888999888887666655 45567889999999999998876532 Q ss_pred Cccccccccccc-----cccccchhhccCCCCcccccccCCCCCCCC---CCCCCCc--ccc------------------ Q lcl|Aclame:pro 482 WGDVPFSGLRNW-----KPEDEQAKAQQGAMPPQLAQAMADQPSQQG---GGVDENS--SVP------------------ 533 (945) Q Consensus 482 GGD~~l~~~n~~-----~ped~~a~~~~~a~~~~~~~~~~d~~~~~~---g~~dd~e--~~~------------------ 533 (945) -.|.+-.+..+. +..+....+ .+..++..+.++...++.-. ...++.+ .++ T Consensus 511 ~~d~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~ag~~~~~~~~ag~v~~~~g~vLl 589 (694) T protein:vir:10 511 ANDDPGVPADDDIDGVLTYVQRLAEG-GDTGAPGGARAGATAPPTVANVNANVNPREAGAQDAAMRAAGAVYVVDGKVLL 589 (694) T ss_pred cccCCCcCccchhhhhHhhhcCcccc-cccCCCCcccccccCCCcccccccccCccccCCCCccceeeEEEEEeCCEEEE Confidence 122222211110 000000000 00001111111110000000 0000000 000 Q ss_pred ---------------chhHHHHHHHHHHHHhhhhhhhhHHHHHhhccCCccccccchHHHHHHHHhhhhHHHHHhhhhhh Q lcl|Aclame:pro 534 ---------------SEQKNAGLEVLRNLFKSLDANASENLKQVIELTNDDNYLKEKELLTRVLKSVGLDSVSEFIENNS 598 (945) Q Consensus 534 ---------------se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945) +..+.....+.|.+.....-+.. .++..+...+. ....|+-.-. T Consensus 590 ~kr~~g~W~lPgG~vE~gEt~~~a~~RE~~EEtGl~~~---~el~~~~~~~~------------------~~h~f~~~~e 648 (694) T protein:vir:10 590 MKRPAGDWGLPAGKVEGNETPEEAARRETREETGYDHD---GELVPLGKFDG------------------FFHAFVAHLE 648 (694) T ss_pred EEecCCCccCCccccCCCCCHHHHHHHHHHHHhCCccc---cceeeeeeecc------------------eEEEEEEeec Confidence 00011111111111111110000 00000000000 0001110000 Q ss_pred hcccccC---------CCcccccchhhHHHHHHhhccchhhhhhhhcccccchhhhh Q lcl|Aclame:pro 599 QTDVEVS---------AKDILSFKYNSLVEDETIYATEKDIVLRLLGKNSLDHRETF 646 (945) Q Consensus 599 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (945) ..++..+ .+|.|----......+-++|+- .|||++.- T Consensus 649 ~~~v~l~dEh~~~~Wf~pdeLP~pL~~~ta~~L~aa~k-----------~l~~~~~~ 694 (694) T protein:vir:10 649 PFDVELNDEHTAFDWFNPDELPHPLHRDTAAIVDAACK-----------ALDRLERA 694 (694) T ss_pred ccCcccCchhhhcccCChhhcCccccHHHHHHHHHHHH-----------HHHhhccC Confidence 0011000 1111111111112222233332 24444444 No 146 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=99.18 E-value=7.8e-10 Score=70.53 Aligned_cols=563 Identities=12% Similarity=0.059 Sum_probs=226.2 Q ss_pred eeccccccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeee---eeee-ecc------------------- Q lcl|Aclame:pro 12 IVNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYS---IIIF-RKN------------------- 68 (945) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-k~n------------------- 68 (945) ....|..||. .|.|...-|....--|..|.|--.|..-. -+=| ++. T Consensus 1 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (695) T protein:vir:36 1 MSRRNAKKRA-----------QLARTGRRPEVAKAATLAAAATIATAAAAQPVPADFARRGALNALDAAPVVEPSPSLRL 69 (695) T ss_pred CCccchhhHH-----------HHhhcCCCcchhhhhhhhhhhhhhhhccccccchhhhhcccccccccccccCCCccccc Confidence 1112222221 12222222222222222111110000000 0000 111 Q ss_pred -eeeeccccc-cccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEE Q lcl|Aclame:pro 69 -QVLKKEKII-VPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIY 146 (945) Q Consensus 69 -~l~kK~K~i-~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~Vy 146 (945) +.|.-.-.. +|+..+.-. +.+-+. .. .+.--+|....+|.++..+...+ +.+-+++|+..|++.+..- |.-. T Consensus 70 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~-~~~~l~~~~~~~F~Gy~~la~la-Q~~eyr~~~~~ia~e~~R~-w~~~ 143 (695) T protein:vir:36 70 ARQFEVDVSNYTPRERRAAS--YALDFN-GT-SMDALSFVTSSGFPGFPTLVLLA-QLPEYRAMHEVLADECIRT-WGEA 143 (695) T ss_pred ceeceecccccCccccchhh--hhhccc-cc-ccccchhhhccCcchHHHHHHHh-hccchhhHHHHHHHHhhcc-ccee Confidence 111100000 111111111 111000 00 00011344445566666666544 8899999999999988654 4211 Q ss_pred EeccCcccc---------cccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec--------- Q lcl|Aclame:pro 147 KHIEDKHVN---------YYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD--------- 208 (945) Q Consensus 147 Rrtedg~ee---------~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird--------- 208 (945) +....+. ..+....+...+.+| +..+.....|+.+...+.++.+.+|...++.+.. T Consensus 144 --~~~~~e~~~~~g~~~~~~~~~~~d~dqik~L----~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL 217 (695) T protein:vir:36 144 --IGGTKEKADTSGLAAGGNAASTSDGDQLKQI----NDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPL 217 (695) T ss_pred --cccchhhhhhccccccccccccCchHHHHHH----HHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCcccccccc Confidence 1110000 000000011112222 2233456777777777777777666655554433 Q ss_pred -------CCCeEEEEEEcCCceeEEEEcC----CC---ceEEEEEEeeCCceeeeecccceeeeeeccCCCCc---cCcc Q lcl|Aclame:pro 209 -------EQGNLVAITPVDGTTIKPILSE----DT---GIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVY---MYGY 271 (945) Q Consensus 209 -------~~G~pveL~pLdPs~Vtv~~d~----dG---~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~~---~~Gy 271 (945) ..|...+|.+++|.+|++.... -+ +.+..|. . .|. .+.++-++.+...+.|+.. +... T Consensus 218 ~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~-V-~G~---kIH~SRL~~f~g~plPd~LKp~y~~~ 292 (695) T protein:vir:36 218 VPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW-M-IGT---EVHATRLHTIVSRPVGDMLKPTYSFA 292 (695) T ss_pred ccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEE-E-ece---EEeeeeEEEecCCCchhhhhcccccC Confidence 1345667999999999875421 11 1122222 2 232 2333334334433444332 1234 Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHH--HHHHHhcCcccCccc Q lcl|Aclame:pro 272 SLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQR--QLQAIMMGDYTQVPI 349 (945) Q Consensus 272 GlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe--~we~~~sG~Nagkp~ 349 (945) |+|-.+.+.+.+.....+.......... ....++. +. ..+.+....-..+.. ++-+.+. +|.|. . T Consensus 293 GiSv~q~~~e~V~~~~rT~~~v~~Li~~--~~v~~lk-~d--------la~aL~~g~~~~l~~R~eli~~~R-sn~G~-~ 359 (695) T protein:vir:36 293 GISMTQLAMPYIDNWLRTRQSVSDIVKQ--FSVSGIL-MD--------LAQALMPGANVDLSMRAELINRYR-DNRNI-L 359 (695) T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHh--hhHHHHH-HH--------HHHhhcChhHHHHHHHHHHHHHhc-Cccce-E Confidence 8999999998888877766666655432 1222221 10 001111111112222 2223333 34444 4 Q ss_pred ccC-CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc-ccccCCCcccHHHHHHHHHH-------HHHHHHHHH Q lcl|Aclame:pro 350 LSG-GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKA-------KGLEPLMAT 420 (945) Q Consensus 350 VL~-~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL-G~~e~gT~SN~Eqq~~~F~~-------~tL~Pll~~ 420 (945) +++ ++-+|.+.+.+....+ +......+.||.+-|||...| |.+..|-.++.|...+.||. .-|+|.++. T Consensus 360 llDk~~Eefeq~stslSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~r 437 (695) T protein:vir:36 360 FLDKATEEFFQFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMND 437 (695) T ss_pred EEecCCcceEEEecccCCHH--HHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH Confidence 556 4678887776665554 555667788999999997766 55555545666666666654 457787777 Q ss_pred HHHHHHHhhccccccceeEEEeechhhcCHHHHHHH-------HHHHHhCCCcCHHHHHHHHhCCCCC-------Ccccc Q lcl|Aclame:pro 421 ISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNI-------IQGQLNTGFRSINEARMEKGLEPVP-------WGDVP 486 (945) Q Consensus 421 IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~-------~~~~v~~GimT~NEaRe~lGlpPve-------GGD~~ 486 (945) +-+.+-+..+... ...+.|+|+.+..++.+++|++ ...+++.|+++++|+|.++.-+|-. -.|.+ T Consensus 438 l~~ii~rS~~G~i-dpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p 516 (695) T protein:vir:36 438 VIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDP 516 (695) T ss_pred HHHHHHHHhcCCC-CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCC Confidence 7666655443332 2358889998888876666554 5567889999999999998876532 12222 Q ss_pred ccccccc-----cccccchhhccCCCCcccccccCCCCCCCC---CCCCCCc--cc------------------------ Q lcl|Aclame:pro 487 FSGLRNW-----KPEDEQAKAQQGAMPPQLAQAMADQPSQQG---GGVDENS--SV------------------------ 532 (945) Q Consensus 487 l~~~n~~-----~ped~~a~~~~~a~~~~~~~~~~d~~~~~~---g~~dd~e--~~------------------------ 532 (945) -.+..+. +..+....+ .+..++..+.++...++.-. ...++.+ .+ T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~ag~~~~~~~aag~v~~~~g~vLl~kr~~ 595 (695) T protein:vir:36 517 GVPADDDIDGVLTYVQRLAEG-GDTGAPGGARAGATAPPTVANVNANVNPREAGAQDAAMRAAGAVYVVDGKVLLMKRPA 595 (695) T ss_pred CcCccchhhhhHhhhcCcccc-cccCCCCcccccccCCCcccccccccCccccCCCCccceeeEEEEEeCCEEEEEEecC Confidence 2211110 000000000 00001101111110000000 0000000 00 Q ss_pred ---------cchhHHHHHHHHHHHHhhhhhhhhHHHHHhhccCCcccccc----chHHHHHHHHhhhhHHHHHhhhhhhh Q lcl|Aclame:pro 533 ---------PSEQKNAGLEVLRNLFKSLDANASENLKQVIELTNDDNYLK----EKELLTRVLKSVGLDSVSEFIENNSQ 599 (945) Q Consensus 533 ---------~se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~~~l~----e~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (945) .+..+.....+.|.+.....-+.. .+...+...+-..+ .-+-.. ++-....+-+.|+. T Consensus 596 g~W~lPgG~vE~gEt~~~aa~RE~~EEtGl~~~---~el~~~g~~~~~~~~f~~~~e~~~--~~l~dEh~~~~Wf~---- 666 (695) T protein:vir:36 596 GDWGLPAGKVEGNETPEEAARRETREETGYDHD---GELVPLGKFDGFFHAFVAHLEPFD--VELNDEHTAFDWFN---- 666 (695) T ss_pred CCccCCccccCCCCCHHHHHHHHHHHHhCCccc---cceeeeeeecceEEEEEEeecccC--cccCchhhhcccCC---- Confidence 000111111111111111110000 00000000000000 000000 00000001111111 Q ss_pred cccccCCCcccccchhhHHHHHHhhccchhhhhhhhcccccchhhhh Q lcl|Aclame:pro 600 TDVEVSAKDILSFKYNSLVEDETIYATEKDIVLRLLGKNSLDHRETF 646 (945) Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (945) +|- -|..|--.+-++| .+|+- .|||++.- T Consensus 667 --pde-LP~pL~~~~a~vl----~aa~k-----------~l~~~~~~ 695 (695) T protein:vir:36 667 --PDE-LPHPLHRDTAAIV----DAACK-----------ALDRLERA 695 (695) T ss_pred --hhh-cCccccHHHHHHH----HHHHH-----------HHHhhccC Confidence 000 0111111122222 23322 24444444 No 147 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=99.08 E-value=2e-09 Score=68.27 Aligned_cols=463 Identities=10% Similarity=0.101 Sum_probs=204.2 Q ss_pred CCCcchhhhhhhhhcc---ceeeeeeeeeecceeeeccccccccccccCCCCCcccccCccc--ceeccccCCcccchhh Q lcl|Aclame:pro 40 YPGFKPLLTYRALAWN---STVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPES--LMYLPSISDPDAFFLI 114 (945) Q Consensus 40 ~~~~~~~~~~~~~~~~---~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~s--l~~lps~s~p~~~~~~ 114 (945) .|.||+.-.-+---.- ..-.+|+..=+.... . +.+| -++....+.. .++.-.....+.+.++ T Consensus 1 ~~~~~~w~~~de~~~~~~~~~~~~~~~~p~~~dG---~-s~i~---------~~~~~~~~~~~~~~~~~gg~~~n~~eLI 67 (533) T protein:vir:58 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGG---S-SMIP---------INMYHPFATAGYASRFYGGIEFNRFFLY 67 (533) T ss_pred CCCcchhhhhhHHHHHHHhhchhhcccCccCCCC---C-cccc---------CCCCcchhhhhhhhhhhccccccHHHHH Confidence 4555543322111000 001222221111110 0 1111 1111111110 0001111123456678 Q ss_pred hhhHHhhhccHHHHHHHHHHHHhhcc-----CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHH Q lcl|Aclame:pro 115 NLFRKYRFNNDSKLIKVSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLG 189 (945) Q Consensus 115 ~v~~~~Am~nsaV~aCV~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~ 189 (945) +.+++.++.+|.|.+||+.|.+.+.- -|..|-. ++.+...+.+ ..+..|| |-..++++ T Consensus 68 ~~YR~ma~~~pEVd~AideIvneaiv~d~~~~pV~v~l--~~~e~s~~iK-----~kI~~ll---df~~~~~~------- 130 (533) T protein:vir:58 68 DMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVT--KDIELAKAIL-----SYLDYVI---NIEKNAYP------- 130 (533) T ss_pred HHHHHhhccCcchhhHHHhhhceeeEecCCCceeEeec--ccccccHHHH-----HHHHHHh---cchhhhhH------- Confidence 89999999999999999999987752 2332221 1111111111 1233444 33344455 Q ss_pred HHHHHHhccCCeEEEEEe-cCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEee------CCceeeeecccceeeeeecc Q lcl|Aclame:pro 190 MVLDDILTIDRGAIVKIR-DEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEV------DGAIVAHFDKRDVVLFRQNL 262 (945) Q Consensus 190 ~Lv~dlLl~Gna~i~iir-d~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~------dG~~~~~~~a~DVIh~r~n~ 262 (945) +++.++..|..|+.++. +..+.+.+|++|+|..|+.++...++.. +|++.. .+......+.+.|+|+...- T Consensus 131 -~fR~WYVDGriy~Hkiik~~k~GI~elr~lDPr~i~~vr~~~t~~e-yyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl 208 (533) T protein:vir:58 131 -IIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDTW-YYVITDVYRNVVSGYFNEDIPEEDVIHFSHKI 208 (533) T ss_pred -HHHhhhhcceeEEEeccCCcccchhhheecCCeeeEEEEeeccceE-EEeecccccccccCccccccchhheeeeeecc Confidence 34556778888887754 3566788999999999998887755543 344332 23344567788888887553 Q ss_pred CCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 263 TPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG 342 (945) Q Consensus 263 ~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG 342 (945) ... ..++++|-+..|...+....-.+... -.++=..++-+-|+...-|.. |..-.++=.+.+...+++.+-= T Consensus 209 ~d~--~~~~iisyLhkAiKp~NQLkmiEDAl-VIYRisRAPeRRvFYIDVGNl-----pk~KAeqYl~~im~k~kNklvY 280 (533) T protein:vir:58 209 DTN--FFPYGRSYLESARAIWNQLRLMEDAL-MLYRVVRSVDRRVFYVDVGNV-----PPDKINEYLTNIAMQYKRDYWV 280 (533) T ss_pred ccC--CCCceehhhhHHHHHHHHHHHHHHHH-HHHhhcCChhheEEEEeecCC-----CccCHHHHHHHHHHhcccceEE Confidence 322 34567788888876666554444432 233334455555776654332 2222222233333343333211 Q ss_pred -cccCcc-----------cc----c-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCccc Q lcl|Aclame:pro 343 -DYTQVP-----------IL----S-----GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKAT 401 (945) Q Consensus 343 -~Nagkp-----------~V----L-----~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN 401 (945) ++.|.+ ++ | +.|.+++.+.-. . +.-++-.+|..+.+.++++||.+-++..++.+.++ T Consensus 281 Da~TGev~ddrk~m~~~sMlEDyWLpRReGgrgTEI~TLpGg-~-lgemeDV~YF~kkLy~ALnVP~sRl~~e~~fgr~~ 358 (533) T protein:vir:58 281 RNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-K-VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKN 358 (533) T ss_pred eccCCeEeeccchhhhhhhHhhhcccccCCCccceeeecCCC-C-CCcHHHHHHHHHHHHHHhCCCeeecCCCCCCccch Confidence 111111 11 0 236777776542 2 55556778899999999999999997654433322 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cccceeEEEeechhhc----C---HHHHHHHHHHHHh---C----- Q lcl|Aclame:pro 402 -AEVMASLTKAKGLEPLMATISKGFDEVVSEF--RNEKDIKLWFKEDDLE----K---ERDWWNIIQGQLN---T----- 463 (945) Q Consensus 402 -~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~--~~~~g~~f~fd~~~l~----D---~kerae~~~~~v~---~----- 463 (945) +.-...-| ...|.-+..++.+.|.+.|... .....|.++|..+..- + +..|+.+++.+-. . T Consensus 359 eItRDEiKF-~KFI~rLR~rF~~ll~~qLilk~iit~eew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k 437 (533) T protein:vir:58 359 TLATQDIKF-NNTIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYS 437 (533) T ss_pred hhhHHHHHH-HHHHHHHHHHHHHHHhcccccccCcchhheeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHH Confidence 21122223 5556777788888887655322 1123466777655432 2 2344444433211 0 Q ss_pred --CCcCHHHHH------HHHhCCCC---CCccccccccccccccccchhhccCC---CCcccccccCCCCCCCCCCCCCC Q lcl|Aclame:pro 464 --GFRSINEAR------MEKGLEPV---PWGDVPFSGLRNWKPEDEQAKAQQGA---MPPQLAQAMADQPSQQGGGVDEN 529 (945) Q Consensus 464 --GimT~NEaR------e~lGlpPv---eGGD~~l~~~n~~~ped~~a~~~~~a---~~~~~~~~~~d~~~~~~g~~dd~ 529 (945) =-|| +|+. +.++..|+ ++.+.-.. +.+........+ ..++..+.++.++...++..+.+ T Consensus 438 ~ILr~t-dei~~q~e~ie~E~~~~~~~~~~~~~e~~------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (533) T protein:vir:58 438 NILQIP-YDLKPQEEVAEAAGGGGLFDTGGFGEETT------PADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLG 510 (533) T ss_pred HHhcCC-hhhhHHHHHHHHhhcCCCCCCCCcccccC------CcccCccccCcccCCCChhhHhcccCCccccccccccc Confidence 0012 1222 12222221 11111010 110000000000 00011111111111111111111 Q ss_pred ccccchhHHHHHHHHHHHHhhhhhhhhHHHHHhhccCCcc Q lcl|Aclame:pro 530 SSVPSEQKNAGLEVLRNLFKSLDANASENLKQVIELTNDD 569 (945) Q Consensus 530 e~~~se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl~n~~ 569 (945) .+...+ ....+. ..+..+.++++ T Consensus 511 ~a~~~~-------------~~~~g~----~~~~~~~p~~~ 533 (533) T protein:vir:58 511 GAFEEF-------------EEETGG----GEEELPFPEEE 533 (533) T ss_pred ccchhh-------------hhhcCC----cccCCCCCCCC Confidence 111110 011111 11112222222 No 148 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=98.77 E-value=5e-08 Score=60.60 Aligned_cols=397 Identities=10% Similarity=0.076 Sum_probs=153.5 Q ss_pred CCCCCcccccCcc--cce-ec-cccCC--cc-----------cc---hhhh---hhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 85 PPFKFNLFEYSPE--SLM-YL-PSISD--PD-----------AF---FLIN---LFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 85 pp~~f~L~~~s~~--sl~-~l-ps~s~--p~-----------~~---~~~~---v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) ..-+.++..-... .+. .+ ..|.. +. .. .... -.+...........+|+..+..+--. T Consensus 1 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~ 80 (485) T protein:vir:10 1 MTAPLPGQEEIEDPAIARDEMVSAFEDSTQNLKTNTSYYEAERRPEAIGVTVPIQMQSLLAHVGYPRLYVDSIAERQAVE 80 (485) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCCChhhhhhhhhcCcHHHHHHHHHhhhccc Confidence 1111111110000 000 00 00000 00 00 0000 00010111122233444443333111 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCe-------EE Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGN-------LV 214 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~-------pv 214 (945) +| +..++. ..+..+.+++++ |. +......+..+.+.+|.+|..+.++..+. .. T Consensus 81 g~---~~~~~~---------~~~~~~~~i~~~-N~-------~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~ 140 (485) T protein:vir:10 81 GF---RFGDAD---------EADEELWQWWQA-NN-------LDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTP 140 (485) T ss_pred ce---ecCCCc---------hhHHHHHHHHHh-cC-------HhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCee Confidence 22 111110 011234444432 21 12234557778889999999988876532 23 Q ss_pred EEEEcCCceeEEEEcCCCc-eEE--EEEEeeCCce---eeeeccccee-------------------------eeeeccC Q lcl|Aclame:pro 215 AITPVDGTTIKPILSEDTG-IVV--GYVQEVDGAI---VAHFDKRDVV-------------------------LFRQNLT 263 (945) Q Consensus 215 eL~pLdPs~Vtv~~d~dG~-~~~--~Yv~~~dG~~---~~~~~a~DVI-------------------------h~r~n~~ 263 (945) .+.+++|..+.++.++..+ ... .+.+...++. ...+..+.++ ++..+.. T Consensus 141 ~i~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~ 220 (485) T protein:vir:10 141 IIRVEPPTRMYAEIDPRIGRVSKAIRVAYDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVPIPNRTR 220 (485) T ss_pred EEEEEccceeEEEEcCCCCceeEEEEEEEeeCCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEEeccccc Confidence 5788899999888765443 221 1112112211 1122222222 2221111 Q ss_pred CCCccCcccccHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHH Q lcl|Aclame:pro 264 PDVYMYGYSLPPIE----ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAI 339 (945) Q Consensus 264 ~d~~~~GyGlSPI~----aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~ 339 (945) . ...+|.|.+. .+.+.+.....-......+|. .|--++. +... .....+. ..-...|+.. T Consensus 221 ~---~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a----~p~~~i~--G~~~------~~~~~~~-~~~~~~~~~~ 284 (485) T protein:vir:10 221 L---SDLYGTSEITPELRSMTDAAARILMLMQATAELMG----VPQRLIF--GIKP------EEIGVDP-ETGQTLFDAY 284 (485) T ss_pred c---CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc----chHHHHh--cCCc------ccccccc-cccchhhhhc Confidence 1 1225666543 333444433333333334432 2322221 0000 0000000 0000112111 Q ss_pred hcCcccCccccc-CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHH----------- Q lcl|Aclame:pro 340 MMGDYTQVPILS-GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMAS----------- 407 (945) Q Consensus 340 ~sG~Nagkp~VL-~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~----------- 407 (945) .+....+ +++.++.++.....+ .+++..+..+.+|+..=++|++.+|.... |.++.++... T Consensus 285 -----~~~i~~~~~~d~k~~q~~~~~~~-~~~~~l~~~i~~~~~~~~~p~~~fg~~~~-n~~Sg~Al~~~~~~l~~k~~~ 357 (485) T protein:vir:10 285 -----LARILAFEDAEGKIQQFSAAELA-NFTNALDQIAKQVAAYTGLPPQYLSTAAD-NPASAEAIRAAESRLIKKVER 357 (485) T ss_pred -----ccceeccCCCCceEEeecccchH-HHHHHHHHHHHHHhcccCCCHHHhccccC-chhHHHHHHHHHHHHHHHHHH Confidence 1223333 356777766544332 47788888899999999999999975433 2222222211 Q ss_pred --HHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCC--CcCHHHHHHHHhCCCCCCc Q lcl|Aclame:pro 408 --LTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTG--FRSINEARMEKGLEPVPWG 483 (945) Q Consensus 408 --~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~G--imT~NEaRe~lGlpPveGG 483 (945) ..+...++..++.+.. +............+++.|......+..+.++++.+++++| +++...+++.+|+.+-+-. T Consensus 358 k~~~f~~~l~~~~~l~~~-~~~~~~~~~~~~~i~v~w~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~~lg~~~~~~~ 436 (485) T protein:vir:10 358 KNSIFGGAWEEAMRLAYR-MMKGGDVPPDMLRMETVWRDPSTPTYAAKADAASKLYNGGTGVIPRERARKDMGYSIAERE 436 (485) T ss_pred HHHHHHHHHHHHHHHHHH-HhCCCCCcccceeeeEEecCCCCCCHHHHHHHHHHHHhccccCCCHHHHHHhCCCCHhHHH Confidence 1122222222222111 1100000011235677887777888899999999999866 8888888988887543210 Q ss_pred cccccccccccccccc---hhhcc----CCCCcccccccCCCCCCCCCCCCCCccc Q lcl|Aclame:pro 484 DVPFSGLRNWKPEDEQ---AKAQQ----GAMPPQLAQAMADQPSQQGGGVDENSSV 532 (945) Q Consensus 484 D~~l~~~n~~~ped~~---a~~~~----~a~~~~~~~~~~d~~~~~~g~~dd~e~~ 532 (945) . .. ...+.. ..+.. +..+....+...++.+.++.+.+.++.. T Consensus 437 ~-----~~--~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (485) T protein:vir:10 437 E-----MR--RWDEEEAAMGLGLIGTMVDPNPTVPGSPSPAPAPKPAALESGGDAA 485 (485) T ss_pred H-----HH--HHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCcCCCCCCCCC Confidence 0 00 000000 00000 0000000000000011111111111111 No 149 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=98.63 E-value=1.7e-07 Score=57.66 Aligned_cols=431 Identities=10% Similarity=-0.007 Sum_probs=161.9 Q ss_pred cccccccccccCCCCCcccccCcccceec-cccCC--cc--------------cchhhhh---hHHhhhccHHHHHHHHH Q lcl|Aclame:pro 74 EKIIVPYNHQEPPFKFNLFEYSPESLMYL-PSISD--PD--------------AFFLINL---FRKYRFNNDSKLIKVSE 133 (945) Q Consensus 74 ~K~i~p~~~r~pp~~f~L~~~s~~sl~~l-ps~s~--p~--------------~~~~~~v---~~~~Am~nsaV~aCV~i 133 (945) -..+...+-.++.-...+.+....-+..+ ..|.. +. .....++ +++...-.....-+|+. T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~e~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~p~~~~~~~~v~n~~~~iVd~ 80 (504) T protein:vir:99 1 MTEETTSASKFTFRIPELNDDVVDKVNGLYQQLVDRTPRNLLRASFYDGKYAIRQIGNLIPPEYLRTATVLGWSAKAVDT 80 (504) T ss_pred CCccCCcccccccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccchhccccccHHHHHHhhccCcHHHHHHH Confidence 11111111112111111111100000000 00000 00 0000000 00111111222334444 Q ss_pred HHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeE Q lcl|Aclame:pro 134 IPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNL 213 (945) Q Consensus 134 IA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~p 213 (945) +++.+---.| +. .++. ..+..+.+++++ |... .....+..+.+.+|.+|+.+..+.+|++ T Consensus 81 ~a~rl~~~Gf---~~-~d~~--------~~~~~l~~i~~~-N~ld-------~~~~~~~~~a~iyG~af~~v~~~~d~~~ 140 (504) T protein:vir:99 81 LARRCNLESF---VW-PDGD--------YGSIGGPDVWDE-NFFA-------TKANNAMVSSLIHGPAFLINTEGGAGEP 140 (504) T ss_pred HHhhhcccee---eC-CCCC--------hhhHHHHHHHHh-cChh-------hHHHHHHHHHHhhCceeEEEecCCCCCc Confidence 4443321222 11 1111 112234455433 4322 2234567788899999999988888876 Q ss_pred E-EEEEcCCceeEEEEcCCCce-EEE--EE-EeeCCcee--eeecccceeeeeec----------------------cCC Q lcl|Aclame:pro 214 V-AITPVDGTTIKPILSEDTGI-VVG--YV-QEVDGAIV--AHFDKRDVVLFRQN----------------------LTP 264 (945) Q Consensus 214 v-eL~pLdPs~Vtv~~d~dG~~-~~~--Yv-~~~dG~~~--~~~~a~DVIh~r~n----------------------~~~ 264 (945) . .+.+++|.++.++.++..+. ... |+ ...+|... ..+.++.++.+... +++ T Consensus 141 ~~~I~~~sP~~~~~iyD~~~~~~~~a~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~~ 220 (504) T protein:vir:99 141 DSLIHVKSAMQATGEWNSRRNAMDSLLSITSRDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYKP 220 (504) T ss_pred eeEEEEeccceeEEEEeCCCCceeEEEEEEEecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEecccc Confidence 4 57889999998877754332 211 11 11222111 12233333222111 001 Q ss_pred CCccCcccccHH----HHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHh Q lcl|Aclame:pro 265 DVYMYGYSLPPI----EILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIM 340 (945) Q Consensus 265 d~~~~GyGlSPI----~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~ 340 (945) .. ...+|.|.| ..+.+.+.....-......||.. +-..|+=.. .... ..-+.+....++....... T Consensus 221 ~~-~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~---p~r~i~G~~----~~~~--~~~d~~~~~~~~~~~~~i~ 290 (504) T protein:vir:99 221 RE-DRPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSF---PQLILLGAD----AKNF--RNKDGSMKPAWQIALARVF 290 (504) T ss_pred cC-ccccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcc---hhhhhccCC----cccc--ccccccccchhhhhhhhhh Confidence 11 123565543 34444444433333344444431 222222110 0000 0000011122222222221 Q ss_pred cCc-ccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHH--HHHHHHHH Q lcl|Aclame:pro 341 MGD-YTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLT--KAKGLEPL 417 (945) Q Consensus 341 sG~-Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F--~~~tL~Pl 417 (945) .-. +....+.-..+.++.++....-+ .|++..+..+.+|+..=++|++.+|+....+.+..++..... +.....-. T Consensus 291 ~~~~~~~~~~~~~~~~~~~q~~~~~l~-~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n~sSa~Ai~~~~~~L~~ka~~k 369 (504) T protein:vir:99 291 ALPDDEDEPDAARARADVKQFPASSPQ-PHIEMLEQIAMMFSGETSIPVESLGFSNRANPTSADAYIASREDLIAEAEGA 369 (504) T ss_pred cCCCccccccccCccceeeecCCCChH-HHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHHHHHH Confidence 111 11110111234566555443222 488889999999999999999999977655444444432111 11122223 Q ss_pred HHHHHHHHHHhh---c---c-----ccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcC--H-HHHHHHHhCCCCCCc Q lcl|Aclame:pro 418 MATISKGFDEVV---S---E-----FRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRS--I-NEARMEKGLEPVPWG 483 (945) Q Consensus 418 l~~IEqeLn~kL---~---~-----~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT--~-NEaRe~lGlpPveGG 483 (945) .+.+.+.+.+.+ + . ......+++.|......+..++++++.++++.|.+. . .-+.+++|+.|-+-. T Consensus 370 ~~~f~~~l~~~~rla~~~~~~~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ag~~l~~~~~~l~~~lg~~~~ei~ 449 (504) T protein:vir:99 370 TDDWSPAFRRSMIRALAIKNGLDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLGAGPEWLKETEVGLELLGLTPQQAK 449 (504) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccceeEecCCCccCHHHHHHHHHHHHhhccccccchHHHHhhcCCCHHHHH Confidence 334444443321 0 0 111234567787777778889999999999988643 2 335566777543210 Q ss_pred c--ccccccccccccccchhhccCCCCcccccccCCCCCCCCCCC-CCCccccchhHH Q lcl|Aclame:pro 484 D--VPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGV-DENSSVPSEQKN 538 (945) Q Consensus 484 D--~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~-dd~e~~~se~k~ 538 (945) . ............+. ....+..+......+.++.+++.+.+ +.....|. ... T Consensus 450 r~~~e~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~e~a~~~~~~~~~~p~-~~~ 504 (504) T protein:vir:99 450 RALAERRRASSVSIIEA--LNRRQQEAATAGEDQDQGAGEPPANEPPAALGRPT-LVG 504 (504) T ss_pred HHHHHHHHHhhHHHHHH--HhcccCCCCCCCCCCCcCCCCCCCCCCCccCCCcc-cCC Confidence 0 00000000000000 00000000000000000000000000 00000000 000 No 150 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=98.62 E-value=5.2e-09 Score=66.00 Aligned_cols=185 Identities=10% Similarity=0.026 Sum_probs=92.4 Q ss_pred EEEeccccccccccchhccHHHHHHHHHHHHHHhcC-cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 307 ILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQ 385 (945) Q Consensus 307 ILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFG 385 (945) |+++++-. ..++. .-..+++.+...... ++.+..++..++-+|..++.+..... +......+.||++-| T Consensus 1 V~k~~~l~-------~~~~~-~~~~~~~r~~~~~~~~~~~~~~~ld~~~e~~e~~~~~lsGl~--d~l~~~~~~iaa~s~ 70 (201) T protein:vir:10 1 MWKAKGLA-------DLCDD-SDGAARLRLAQVDNNSGVGQAIGIDADSEEYNVLNSDIGGID--TFLSQKFDRIVALSG 70 (201) T ss_pred CccchHHH-------HHhcC-ChHHHHHHHHHHHHhhhhhhhheeecCCcceeeeecCcCChH--HHHHHHHHHHHhHhc Confidence 33222110 11111 112333333322211 22233344444456666665554433 566778899999999 Q ss_pred CChhhcccccCCC-cccHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHH---- Q lcl|Aclame:pro 386 VSPQDVGILEGSN-KATAEVMASLTKAK-------GLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDW---- 453 (945) Q Consensus 386 VPP~lLG~~e~gT-~SN~Eqq~~~F~~~-------tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~ker---- 453 (945) ||...|-....+. .++.+.....||.. -++|.+.++- .++.. ...|.|+|+....++.+++ T Consensus 71 iP~t~LfG~sp~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~----~~~~~---~~~~~~~f~pL~~~s~kekAei~ 143 (201) T protein:vir:10 71 IHEIILKGKNVGGVSASQNTALETFYGYVDRKRKAELLPLLEFLL----PFIVT---EQEWSVEFNPLSQVSDKDKSEIL 143 (201) T ss_pred CchhhhcCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcC---CCCceEeeCCCCCCCHHHHHHHH Confidence 9987774444333 34555566666553 3344433322 22222 2468899999988876555 Q ss_pred ---HHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCC Q lcl|Aclame:pro 454 ---WNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDE 528 (945) Q Consensus 454 ---ae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd 528 (945) ++++++++++|+++++|+|+.+.-.+..++ .+-+...+.... ....+++.. ..++ T Consensus 144 ~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~----~~~~~~~~~~~~-------------~e~~dp~~~---~~~~ 201 (201) T protein:vir:10 144 EKNVNSVAALIAAGIIDADEARDTLRAISTEVK----IGEGSIQTEVVI-------------NESEDPLDV---SANN 201 (201) T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHhcCCcCC----CCCCCCCccccc-------------cccCCCCCC---CCCC Confidence 456777889999999999999876554332 111111111000 000011100 0011 No 151 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=98.60 E-value=2.2e-07 Score=57.10 Aligned_cols=374 Identities=11% Similarity=0.034 Sum_probs=158.9 Q ss_pred eccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCCh Q lcl|Aclame:pro 101 YLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSE 180 (945) Q Consensus 101 ~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~ 180 (945) .+|. +.+..+ ....+.+ ......-+|+.+++.+---.|. ..++. .+..+.+++.+ |... T Consensus 1 ~l~~-~~~~~~---~~~~~~~-v~n~~~~ivd~~~~~l~~~gf~----~~d~~---------~~~~~~~i~~~-N~~d-- 59 (434) T protein:vir:98 1 MLPK-NAEQAF---LDFQRKA-RTNFCGLIANASVHRLLALGVT----GPDGE---------PDTRASRWWQA-NRLD-- 59 (434) T ss_pred CCCC-CccHHH---HHhhhhh-hccchHHHHHHHHhhhccCcee----cCCCc---------hHHHHHHHHHh-cChh-- Confidence 1221 111110 0111111 1224455667666644322332 12211 12234555543 4222 Q ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEecCCCeE------EEEEEcCCceeEEEEcCCCceE-E--EEEE-eeCCceee-e Q lcl|Aclame:pro 181 VNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNL------VAITPVDGTTIKPILSEDTGIV-V--GYVQ-EVDGAIVA-H 249 (945) Q Consensus 181 ~eFwetli~~Lv~dlLl~Gna~i~iird~~G~p------veL~pLdPs~Vtv~~d~dG~~~-~--~Yv~-~~dG~~~~-~ 249 (945) .....+..+.+.+|.+|+.+.++..|.. ..+.+++|.++.++.++..+.+ . .|+. ..++.... . T Consensus 60 -----~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~~~~ 134 (434) T protein:vir:98 60 -----SRQKLVWRMAMAQSAGYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGYARV 134 (434) T ss_pred -----HHHHHHHHHHhhcCceEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEeccCCceEEEE Confidence 2344567788999999999887765432 2377899999988776543221 1 1111 11111100 0 Q ss_pred eccc---------------------------------------ceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 250 FDKR---------------------------------------DVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFID 290 (945) Q Consensus 250 ~~a~---------------------------------------DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aae 290 (945) +..+ -++++..++ +. ...|.|.++.....++....+. T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~--~~--~~~g~sd~e~vi~liDa~~~~~ 210 (434) T protein:vir:98 135 FFDDTSFPYRTRERTGARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMP--DL--GEDPEPEFAGVLDIQDRVNLGI 210 (434) T ss_pred EEeCcEEEEEEeeccccccccccccceecccccccccCCCCccceEEeccCC--Cc--CcCCcchhhhHHHHHHHHHHHH Confidence 0000 022332221 11 1246666666665555544443 Q ss_pred HHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccC-CCceeeeccCChhhHHH Q lcl|Aclame:pro 291 KGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG-GKFTWIDFKGKRRDMQF 369 (945) Q Consensus 291 e~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~-~G~k~~pLs~sp~D~Qf 369 (945) -......... +.|--++. +.. . .....+. ......++-...+ .+...+++ ++.++.++.....+ .+ T Consensus 211 s~~~~~~~~~-a~p~~~i~--G~~-~-----~~~~~~~-~~~~~~~~~~~~~--~~~i~~~~~~~~~~~q~~~~~~~-~~ 277 (434) T protein:vir:98 211 LNRMAASRFS-GFRQKWIK--GHK-F-----AKRTDPA-TGMTVVDQPFVPS--PSAVWASEGENTQFGQLDATDLS-GF 277 (434) T ss_pred HHHHHHHHHh-cchhhhhc--CCC-c-----ccccccc-cccchhhhhhhcc--ccccccCCCCCceEEEecCcchH-HH Confidence 3322222111 22322321 100 0 0011111 1111122221111 12223333 46777776544332 47 Q ss_pred HHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHH--HHHHHHHHHHHHHHHHHHhh---cc----ccccceeEE Q lcl|Aclame:pro 370 KELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLT--KAKGLEPLMATISKGFDEVV---SE----FRNEKDIKL 440 (945) Q Consensus 370 lE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F--~~~tL~Pll~~IEqeLn~kL---~~----~~~~~g~~f 440 (945) ++..+..+..|+..=++|++.+|.. .++ ++.++....+ +.....-..+.+.+.+.+.+ .. ......+.+ T Consensus 278 ~~~l~~~i~~~~~~~~~p~~~~~~~-~~n-~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~~~~~~~v 355 (434) T protein:vir:98 278 LKEHASDVRDMLTISQTPTYLYATD-LVN-ISADTIGALDILHVAKVREHIASFSEGLESVLALAAAQAGVPEDYTEAEV 355 (434) T ss_pred HHHHHHHHHHHhcccCCCHHHhccc-cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhheeeeE Confidence 7888889999999999999999842 222 2222222111 11111112233333333221 11 112234677 Q ss_pred EeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCC Q lcl|Aclame:pro 441 WFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPS 520 (945) Q Consensus 441 ~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~ 520 (945) .|......+..+.++++.++.+.|+ +..-+++.+|+++-+ .- ...+........+ ....++.+.++.+ T Consensus 356 ~w~~~~~~s~~~~ada~~kl~~~g~-~~e~~~~~lg~~~~e---~~-------r~~~e~~~~~~~~-~~~~~~~~~~~~g 423 (434) T protein:vir:98 356 RWANPAHVTMAVKADAATKLKSIGY-PLDVIAEELDESPAR---VR-------RIVAGAASQALLA-ASLLPAPGAPSAG 423 (434) T ss_pred EecCCCCCCHHHHHHHHHHHHhcCC-cHHHHHHhCCCCHHH---HH-------HHHHHHHHHHHHH-HhhhccCCCCCCC Confidence 8888888889999999999998885 677778888775421 00 0000000000000 0000000011111 Q ss_pred CCCCCCCCCccccch Q lcl|Aclame:pro 521 QQGGGVDENSSVPSE 535 (945) Q Consensus 521 ~~~g~~dd~e~~~se 535 (945) ..++.. ..++. T Consensus 424 ~~~~~~----~~~dg 434 (434) T protein:vir:98 424 NVPDSG----GAVDG 434 (434) T ss_pred CCCccc----CCCCC Confidence 111111 11111 No 152 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=98.55 E-value=3e-07 Score=56.35 Aligned_cols=447 Identities=12% Similarity=0.087 Sum_probs=174.7 Q ss_pred CchhhhHhhhheeccccccCccccccchhchhhhhc---ccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccc Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIKANVDSLSR---GKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKII 77 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i 77 (945) |..+=..-++.|..++..+|++...+.....+.+.+ -..++-.+-+..| |. -++.+++++... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~Y----------Y~----g~~~i~~~~~~~ 66 (503) T protein:vir:59 1 MADIYPLGKTHTEELNEIIVESAKEIAEPDTTMIQKLIDEHNPEPLLKGVRY----------YM----CENDIEKKRRTY 66 (503) T ss_pred CcccccCChhhHHhHHHhhhhhhhhccchhHHHHHHHHHhhcHHHHHHHHHH----------hc----cccchhhccchh Confidence 444333334444444444444432222222222211 1111111111111 00 012222222211 Q ss_pred cccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccc Q lcl|Aclame:pro 78 VPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYY 157 (945) Q Consensus 78 ~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~ 157 (945) .....+.... . ..++. .+..+....+|+..+.-+-+-|+.+- .+.+ T Consensus 67 ~~~~~~~~~~-----~------------~~~~~----------ri~~n~~~~ivd~~~~yl~g~~~~~~---~~d~---- 112 (503) T protein:vir:59 67 YDAAGQQLVD-----D------------TKTNN----------RTSHAWHKLFVDQKTQYLVGEPVTFT---SDNK---- 112 (503) T ss_pred cccccccccc-----c------------ccccc----------eeecchHHHHHHHHHhhhhcCCeeec---cCcH---- Confidence 1110000000 0 00100 01123344566777777767676541 1110 Q ss_pred cchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC--CceE Q lcl|Aclame:pro 158 LKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED--TGIV 235 (945) Q Consensus 158 ~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d--G~~~ 235 (945) .....+..++ . |. | ......+..+.+.+|.+|..+..+.+|++ .+..++|..+.++.++. +... T Consensus 113 ----~~~~~l~~~~-~-n~------~-~~~~~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~~p~~~~~i~d~~~~~~~~ 178 (503) T protein:vir:59 113 ----TLLEYVNELA-D-DD------F-DDILNETVKNMSNKGIEYWHPFVDEEGEF-DYVIFPAEEMIVVYKDNTRRDIL 178 (503) T ss_pred ----HHHHHHHHHH-h-cC------H-HHHHHHHHHHHhhCCeEEEEEeecCCCce-EEEEEccceeEEEEeCCCCCceE Confidence 1111222222 2 32 1 12344567778899999999988888886 58899999998877653 2221 Q ss_pred --EEEEEeeCC--c---eeeeecccceeeeeecc-----------------------------CCC--CccCcccccHHH Q lcl|Aclame:pro 236 --VGYVQEVDG--A---IVAHFDKRDVVLFRQNL-----------------------------TPD--VYMYGYSLPPIE 277 (945) Q Consensus 236 --~~Yv~~~dG--~---~~~~~~a~DVIh~r~n~-----------------------------~~d--~~~~GyGlSPI~ 277 (945) ++|+...++ . ....+.+..+.++.... .|- ......|.|-+. T Consensus 179 ~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~~~nn~~~~sd~~ 258 (503) T protein:vir:59 179 FALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIGWGRVPIIPFKNNEEMVSDLK 258 (503) T ss_pred EEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceeccCCccceEEecCCCCCCcchh Confidence 112211111 1 11122233222221100 000 001123555555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCcee Q lcl|Aclame:pro 278 ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTW 357 (945) Q Consensus 278 aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~ 357 (945) .+...++....+.....+.+.. .+.|-.++. +... +..+.+...+. ..+.+.++++.+. T Consensus 259 ~~~~liDa~d~~~s~~~~~~~~-~~~~~~v~~--g~~~-----------~~~~~~~~~~~-------~~~~~~~~~~~~~ 317 (503) T protein:vir:59 259 FYKDLIDNYDSITSSTMDSFSD-FQQIVYVLK--NYDG-----------ENPKEFTANLR-------YHSVIKVSGDGGV 317 (503) T ss_pred hhHHHHHHHHHHHHHHHHHHHH-hcCCeeEee--cCCc-----------cccchhhhhhh-------cccceeccCCCcc Confidence 5555554433333333333332 234544442 1110 01111111111 1123344444444 Q ss_pred eeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHH------------HHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 358 IDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAE------------VMASLTKAKGLEPLMATISKGF 425 (945) Q Consensus 358 ~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~E------------qq~~~F~~~tL~Pll~~IEqeL 425 (945) ..+........+....+...+.|...-++|..-.+.. .++-|... +.....+...|+-+++.+...+ T Consensus 318 ~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~ 396 (503) T protein:vir:59 318 DTLRAEIPVDSAAKELERIQDELYKSAQAVDNSPETI-GGGATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEYL 396 (503) T ss_pred eeEeccCCHHHHHHHHHHHHHHHHHHhcccCCCcccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4444444445556677777777877777774322111 12222111 1122233444444444444333 Q ss_pred HHhhccc-cccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhcc Q lcl|Aclame:pro 426 DEVVSEF-RNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQ 504 (945) Q Consensus 426 n~kL~~~-~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~ 504 (945) ...-... .....+.+.|......|..+.++++.+++++|+++...+.++++. +++.+.-+-. ..-+......+. T Consensus 397 ~~~~~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~l~~--v~d~~~E~~r---i~~E~~~~~~~~ 471 (503) T protein:vir:59 397 RNTGKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVARNPF--VQDPEEELAR---IEEEMNQYAEMQ 471 (503) T ss_pred HhccCcccccccceeEEeCCCCCCCHHHHHHHHHHHHhCCCCchHHHHHhCCC--CCCHHHHHHH---HHHHHHHHHhhh Confidence 3211111 112347888988888999999999999999999998888877654 3221111100 000000000000 Q ss_pred CCCCcccccccCCCCCCCCCCCCCCccccchhHHHHHHH Q lcl|Aclame:pro 505 GAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAGLEV 543 (945) Q Consensus 505 ~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a~~~~ 543 (945) ....++ ..+.+...++.+...+ +++-.+++.. T Consensus 472 ~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~g~~~ 503 (503) T protein:vir:59 472 GNLLDD--EGGDDDLEEDDPNAGA-----AESGGAGQVS 503 (503) T ss_pred ccccCc--cCCCCCCCcCCCCCCc-----ccCCCCCCcC Confidence 000000 0000000000000000 0000000000 No 153 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=98.55 E-value=3.1e-07 Score=56.30 Aligned_cols=406 Identities=10% Similarity=0.013 Sum_probs=161.3 Q ss_pred hccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHH Q lcl|Aclame:pro 53 AWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVS 132 (945) Q Consensus 53 ~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~ 132 (945) --+.|-.= ++ ++|+++-..-.+-..+. ...+.+.. .+..++. ..|... -.. ...........+|+ T Consensus 1 ~~~~t~~~--~~---~~l~~~~~~~~~r~~~l----~~Yy~g~~-~i~~~~~-~~~~~~--~~~--~~~~~~n~~~~ivd 65 (456) T protein:vir:79 1 MTASTPAE--WL---PVLTKRIDDGMSRVRLL----ARYSNGDA-PLPELTR-NTSAAW--RSF--QREARTNWGLMVRD 65 (456) T ss_pred CCCCCHHH--HH---HHHHHHHHHHHHHHHHH----HHHHhccC-ChhhcCc-ccChhh--chh--hhhhhcchHHHHHH Confidence 00000000 00 00000000000000000 00011100 0000000 001000 000 00011234566777 Q ss_pred HHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCe Q lcl|Aclame:pro 133 EIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGN 212 (945) Q Consensus 133 iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~ 212 (945) ..++.+-.-|+.+- ...+.. ....+.+++.+ |. + ......+..+.+.+|.+|..+..+..|. T Consensus 66 ~~~~~l~~~g~~~~-~~~d~~---------~~~~~~~~~~~-n~-~------d~~~~~~~~~a~~~G~a~~~~~~~edg~ 127 (456) T protein:vir:79 66 SVADRIIPNGITVG-GSADSD---------LALRARRIWRD-NR-M------DSVCKQWVKYGLDFGESYLTCWRRDDGT 127 (456) T ss_pred HHHhhhccCCeecC-CCCCcc---------HHHHHHHHHHh-cC-h------hHHHHHHHHHHhhcCeeEEEEeeCCCCc Confidence 77777766677632 111110 11234455543 32 1 1234557778889999999888898998 Q ss_pred EEEEEEcCCceeEEEEcCCCce-E---EEEEEeeCCcee--eeeccccee------------------------------ Q lcl|Aclame:pro 213 LVAITPVDGTTIKPILSEDTGI-V---VGYVQEVDGAIV--AHFDKRDVV------------------------------ 256 (945) Q Consensus 213 pveL~pLdPs~Vtv~~d~dG~~-~---~~Yv~~~dG~~~--~~~~a~DVI------------------------------ 256 (945) + .+..++|..+.++.++.... . .+|+...++... ..+..+.+. T Consensus 128 ~-~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (456) T protein:vir:79 128 A-TITADSPETMVVSVDPLQPWRIRSAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDA 206 (456) T ss_pred e-EEEEeccceeEEEEcCCCCCceEEEEEEEEecCCceeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccc Confidence 7 58899999998877653221 1 112211111110 000000000 Q ss_pred eeeeccCCC-CccCcccccHHHHHHHHHHHHHHHHH---HHHHHHHhCCCCceEEEEecc-ccccccccchhccHHHHHH Q lcl|Aclame:pro 257 LFRQNLTPD-VYMYGYSLPPIEILYKVILSDIFIDK---GNLDYYRKGGSIPEGILAIEP-PSYKEGDIYPQLSREQLES 331 (945) Q Consensus 257 h~r~n~~~d-~~~~GyGlSPI~aa~~~I~~~~aaee---~~a~~F~nnGa~PsGILs~k~-g~~~~~k~~~~LS~Eq~er 331 (945) |+.....|- ......|+|.++.....++....+.. ....++. .|.-++.-.. ........+..++ T Consensus 207 ~~~~~~~pvv~~~N~~~~gd~e~v~~liD~~~~~~s~~~~~~~~~a----~~~~~~~G~~~~~~~~d~~g~~i~------ 276 (456) T protein:vir:79 207 VVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQA----FRQRALKSSEHRLPKVDENGNAID------ 276 (456) T ss_pred cCCCCceeEEEecCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHh----hHHHHHhcCCcccccccccccccc------ Confidence 100000000 00011355555554444433222211 1112221 1111111000 0000000011111 Q ss_pred HHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHH- Q lcl|Aclame:pro 332 IQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTK- 410 (945) Q Consensus 332 lKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~- 410 (945) ....|... .+....+++|.++.++...+. ..+.+..+..+.+|+..-++|++.+|.... |.| .++....+. T Consensus 277 ~~~~~~~~-----~~~~~~~~~~~~~~q~~~~~~-~~~~~~l~~~i~~i~~~t~~p~~~~~~~~~-N~S-g~Al~~~~~~ 348 (456) T protein:vir:79 277 YASIFEAA-----PGALWELPPGVDIWESQTNDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQS-AEGAHNIEKG 348 (456) T ss_pred hhhhhhhh-----ccccccCCCCcceeeecccCh-HHHHHHHHHHHHHHHhhcCCChhHhccccc-CcH-HHHHHHHHHH Confidence 11122221 123345678888876654333 347888899999999999999999985322 222 122211111 Q ss_pred -HHHHHHHHHHHHHHHHHhh---c---cccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCc Q lcl|Aclame:pro 411 -AKGLEPLMATISKGFDEVV---S---EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWG 483 (945) Q Consensus 411 -~~tL~Pll~~IEqeLn~kL---~---~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGG 483 (945) ..-..-..+.+...+.+.+ . .......+++.|......+..+.++++.++++.|+++...+++.+|+.+-+ T Consensus 349 l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~G~~~~~~~~~~lg~~~~~-- 426 (456) T protein:vir:79 349 FLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQ-- 426 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEeCCCCCcCHHHHHHHHHHHHhcCCChHHHHHhcCCCCHHH-- Confidence 1111111122222222211 1 111123567788777778889999999999999999988888888775421 Q ss_pred cccccccccccccccc-hhhccCCCCcccccccCCCCCCCCCCCC Q lcl|Aclame:pro 484 DVPFSGLRNWKPEDEQ-AKAQQGAMPPQLAQAMADQPSQQGGGVD 527 (945) Q Consensus 484 D~~l~~~n~~~ped~~-a~~~~~a~~~~~~~~~~d~~~~~~g~~d 527 (945) ... .+.. ...+.++......+. ++ ++++. T Consensus 427 -i~~--------~e~~r~~~e~~~~~~~~~~~-~~-----~~~~~ 456 (456) T protein:vir:79 427 -IKQ--------DDLDRAREQITLFAGNPVQR-PQ-----EDGSR 456 (456) T ss_pred -HHH--------HHHHHHHHHHHHHhhhHhhc-CC-----CCCCC Confidence 000 0000 001111100000000 00 00010 No 154 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=98.46 E-value=5.8e-07 Score=54.78 Aligned_cols=346 Identities=12% Similarity=0.060 Sum_probs=151.4 Q ss_pred cccCcccceecc-ccCCcccchhhhhhHHhhh-ccHH------HHHHHHHHHHhhccCceEEEEe-----ccCccccccc Q lcl|Aclame:pro 92 FEYSPESLMYLP-SISDPDAFFLINLFRKYRF-NNDS------KLIKVSEIPKKLTSKELEIYKH-----IEDKHVNYYL 158 (945) Q Consensus 92 ~~~s~~sl~~lp-s~s~p~~~~~~~v~~~~Am-~nsa------V~aCV~iIA~~IAsLP~~VyRr-----tedg~ee~~~ 158 (945) ++.. .+..+- .|.. .........+++. .++. +-.......+.+...|=.+... .-+|- T Consensus 1 ~~~~--~i~~L~~~~~~--~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf----- 71 (409) T protein:vir:94 1 MTEK--GIGYLRFKLSV--HKRRAEMRYDQYAMKYVDRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFREF----- 71 (409) T ss_pred CCHH--HHHHHHHHHHH--HhHHHHHHHHHhcccCchhhcChhhhHHHHHHHhhhcchhHHHHHHhHhhcccCcc----- Confidence 1110 000000 0000 0000001111111 1111 1111111111222111111100 00110 Q ss_pred chhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceEE-E Q lcl|Aclame:pro 159 KRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVV-G 237 (945) Q Consensus 159 r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~-~ 237 (945) ...+..+.+++++ |.. ......+..+.+.+|.+|+.+..+.+|.| .+.+++|.++.++.++..+.+. . T Consensus 72 --~~~d~~l~~i~~~-N~l-------d~~~~~~~~~aliyG~sf~~v~~~~dg~~-~i~~~sp~~~~~i~D~~~~~~~~a 140 (409) T protein:vir:94 72 --ENDDFTVNEIFEE-NNP-------DIFFDSAVLSSLIASCSFTYISKGENDAV-RLQVIEAVNATGIIDPITGLLTEG 140 (409) T ss_pred --cCCchHHHHHHHh-cCh-------hHHHHHHHHHHHHhcceeEEEecCCCCce-EEEEeccceEEEEEecCCCceeee Confidence 0011123333322 221 12334566778899999999999999986 6889999999888776543322 2 Q ss_pred EEEeeC--Cc-e--eeeecccce----------------------eeeeeccCCCCccCcccccH----HHHHHHHHHHH Q lcl|Aclame:pro 238 YVQEVD--GA-I--VAHFDKRDV----------------------VLFRQNLTPDVYMYGYSLPP----IEILYKVILSD 286 (945) Q Consensus 238 Yv~~~d--G~-~--~~~~~a~DV----------------------Ih~r~n~~~d~~~~GyGlSP----I~aa~~~I~~~ 286 (945) |....+ ++ . ...+.++.+ +++..+ ++. .+.+|.|. +..+.+.+... T Consensus 141 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~--~~~-~~~~G~s~I~e~v~~l~da~~r~ 217 (409) T protein:vir:94 141 YAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHR--PDA-VRPFGRSRITRSGMYWQSNAKRT 217 (409) T ss_pred EEEEEecCCCceEEEEEEecCcEEEEEecCceeEeeeCCCCCcceEEeccc--ccc-ccccCccccchhHHHHHHHHHHH Confidence 222111 11 1 011222222 222211 111 23467664 44555555555 Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhh Q lcl|Aclame:pro 287 IFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRD 366 (945) Q Consensus 287 ~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D 366 (945) ..-......||. .+-..++=. ..+ .+..+.++........-... --+++.++.++....-+ T Consensus 218 ~~~~~~~~e~~a---~pqr~i~G~----d~d--------~~~~~~~~~~~~~i~~~~~d----~dg~~~~v~q~~~~~l~ 278 (409) T protein:vir:94 218 LERADVTAEFYS---FPQKYVTGL----SDD--------AEPMETWKATVSSMLQFTKD----EDGDKPTLGQFTQPSMS 278 (409) T ss_pred HHHHHHHHHHhc---ChhheeEec----CCC--------CcccchhhhhHHHhhcCCCC----CCCCCceEEecCCCChh Confidence 544455556653 233333311 111 11122333332222211000 00134566555443322 Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHH--HHHHHHHHHHHHHHHHHHh----h--cc-----cc Q lcl|Aclame:pro 367 MQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLT--KAKGLEPLMATISKGFDEV----V--SE-----FR 433 (945) Q Consensus 367 ~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F--~~~tL~Pll~~IEqeLn~k----L--~~-----~~ 433 (945) .|++..+..+.++|..-++|++.+|.... |-+..++..... .....+-..+.+.+.+.+. + .. .. T Consensus 279 -~~~~~l~~~~~~~a~~t~lP~~~lg~~~~-NpsSa~Al~a~~~~L~~~a~~k~~~fg~~~~~~~rla~~i~~~~~~~~~ 356 (409) T protein:vir:94 279 -PFTEQLRTAAAGFAGETGLTLDDLGFVSD-NPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDAPYLRE 356 (409) T ss_pred -HHHHHHHHHHHHHhhhcCCCHHHhccccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc Confidence 58899999999999999999999987553 222222222111 1111111222233333221 1 11 01 Q ss_pred ccceeEEEeechhh---cCHHHHHHHHHHHHhCC--CcCHHHHHHHHhCCCCC Q lcl|Aclame:pro 434 NEKDIKLWFKEDDL---EKERDWWNIIQGQLNTG--FRSINEARMEKGLEPVP 481 (945) Q Consensus 434 ~~~g~~f~fd~~~l---~D~kerae~~~~~v~~G--imT~NEaRe~lGlpPve 481 (945) .....++.|..... ....+.++++.+++++| +...+-+++++|+..-+ T Consensus 357 ~~~~~~v~W~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~~~~~~~~~lG~~~~d 409 (409) T protein:vir:94 357 QFRKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIEGGE 409 (409) T ss_pred ccccceEEeccCCCcchHHHHHHHHHHHHHHHhcccccchhHHHHHcCCCCCC Confidence 12345667763322 23456778899999998 56668899999997655 No 155 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=98.45 E-value=6.2e-07 Score=54.63 Aligned_cols=414 Identities=10% Similarity=0.053 Sum_probs=150.7 Q ss_pred cccccccccccCCCCCcccccCcccce-ecccc------CCccc---chhhhh---hHHhhhccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 74 EKIIVPYNHQEPPFKFNLFEYSPESLM-YLPSI------SDPDA---FFLINL---FRKYRFNNDSKLIKVSEIPKKLTS 140 (945) Q Consensus 74 ~K~i~p~~~r~pp~~f~L~~~s~~sl~-~lps~------s~p~~---~~~~~v---~~~~Am~nsaV~aCV~iIA~~IAs 140 (945) =.-+.++..........+.+-. ..+. ..+.. ..... .....+ .+....-......+|+..++.+-- T Consensus 1 ~~~~i~~~~~~~~~~~~~~~L~-~~~~~~~~r~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~ 79 (485) T protein:vir:24 1 MTAPLPGQEEIADPAIARDEMV-SAFEDQNQNLRSNTSYYEAERRPEAIGVTVPVQMQSLLAHVGYPRLYVDSIAERQAV 79 (485) T ss_pred CCCCCCCCCcccchHHHHHHHH-HHHHHHHHHHHHHHHHHhccCchhhcCcccchhhhhhhhccchHHHHHHHHhhhhcc Confidence 0000000000000000000000 0000 00000 00000 000000 000001111222233333332222 Q ss_pred CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeE------- Q lcl|Aclame:pro 141 KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNL------- 213 (945) Q Consensus 141 LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~p------- 213 (945) -+|.+ . ++. ..+..+.+++++ |. +......+..+.+.+|.+|..+.++..+.. T Consensus 80 ~g~~~---~-~~~--------~~~~~l~~i~~~-N~-------~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~ 139 (485) T protein:vir:24 80 EGFRL---G-DAD--------EADEELWQWWQA-NN-------LDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNV 139 (485) T ss_pred Cceec---C-CCc--------hhHHHHHHHHHh-cC-------hhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCc Confidence 22221 1 100 011224445432 32 123455677888999999999888876532 Q ss_pred EEEEEcCCceeEEEEcCCCc-eEEEE--EEeeCCce---eeeecccce-------------------------eeeeecc Q lcl|Aclame:pro 214 VAITPVDGTTIKPILSEDTG-IVVGY--VQEVDGAI---VAHFDKRDV-------------------------VLFRQNL 262 (945) Q Consensus 214 veL~pLdPs~Vtv~~d~dG~-~~~~Y--v~~~dG~~---~~~~~a~DV-------------------------Ih~r~n~ 262 (945) ..+.+++|..+.++.++..+ ....| .+..+++. ...+..+.+ ++++.+. T Consensus 140 ~~i~~~~p~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~ 219 (485) T protein:vir:24 140 PLIRVEPPTRMYAEIDPRIGRPAKAIRVAYDAEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPNRT 219 (485) T ss_pred ceEEEeccceeEEEeeCCcCceeEEEEEEEeecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCcccEEEeccCc Confidence 25888999999887765432 22111 11111111 111222222 2222111 Q ss_pred CCCCccCcccccHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHH Q lcl|Aclame:pro 263 TPDVYMYGYSLPPIE----ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQA 338 (945) Q Consensus 263 ~~d~~~~GyGlSPI~----aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~ 338 (945) . ..+.+|.|.+. .+.+.+.....-......+|. .|--++. + ..... ........ ...|+. T Consensus 220 ~---~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a----~p~~~i~--G-~~~~~--~~~~~~~~----~~~~~~ 283 (485) T protein:vir:24 220 R---LSDLYGTSEITPELRSMTDAAARILMLMQATAELMG----VPQRLIF--G-IKPEE--IGVDPETG----QTLFDA 283 (485) T ss_pred c---cCCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhc----chhhhhc--c-CCccc--cccccccc----cchhhh Confidence 1 11235666544 233333333222222333332 2332322 1 00000 00000000 111221 Q ss_pred HhcCcccCccccc-CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHH----------- Q lcl|Aclame:pro 339 IMMGDYTQVPILS-GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMA----------- 406 (945) Q Consensus 339 ~~sG~Nagkp~VL-~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~----------- 406 (945) . .+....+ +++.++.++.....+ .+++..+..+.+++..=++|++.+|..... .++.++.. T Consensus 284 ~-----~~~i~~~~~~~~~~~q~~~~~~e-~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n-~~Sg~Al~~~~~~l~~ka~ 356 (485) T protein:vir:24 284 Y-----LARILAFEDAEGKIQQFSAAELA-NFTNALDQIAKQVAAYTGLPPQYLSTAADN-PASAEAIRAAESRLIKKVE 356 (485) T ss_pred c-----ccceeccCCCCceEEeecccchH-HHHHHHHHHHHHHhcccCCCHHHhccccCc-chHHHHHHHHHHHHHHHHH Confidence 1 1222333 457777666544333 477778888888888889999999754332 12222221 Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCC--CcCHHHHHHHHhCCCCCC Q lcl|Aclame:pro 407 --SLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTG--FRSINEARMEKGLEPVPW 482 (945) Q Consensus 407 --~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~G--imT~NEaRe~lGlpPveG 482 (945) ...+..+++-.++.+....+. .-......++++.|......+..+.++.+.+++++| +++..-+++.+|+.+-+- T Consensus 357 ~~~~~f~~~l~~~~~l~~~~~~~-~~~~~d~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l~~~~d~~ 435 (485) T protein:vir:24 357 RKNAIFGGAWEEAMRLAYRLMKG-GDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKDMGYSIAER 435 (485) T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCCccccceeeEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhhCCCCHhHH Confidence 111222233222222211110 000112235677887777778888999988888765 777777888877753221 Q ss_pred ccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhHHH Q lcl|Aclame:pro 483 GDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNA 539 (945) Q Consensus 483 GD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a 539 (945) .. +-....- ......+..++......+.+. .+.+++..+.++.++....| T Consensus 436 ~e--~~~~~ee--~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~a 485 (485) T protein:vir:24 436 EE--MRRWDEE--EAAMGLGLLGTMVDADPTVPG---SPNPTPAPKPQPAIEGGDSA 485 (485) T ss_pred HH--HHHHHHH--HhhhhhhHHHhhcccCCCCCC---CCCCCCCCCCccCCCCCCCC Confidence 10 0000000 000000000000000000000 00000000110001101111 No 156 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=98.36 E-value=1.1e-06 Score=53.25 Aligned_cols=427 Identities=11% Similarity=0.041 Sum_probs=175.3 Q ss_pred ccccchhchhhhhcccCC-CCcchhhhhhhhhccceeeeeeeeeecceeeecccccccccccc-CCCCCcccccCcccce Q lcl|Aclame:pro 23 FSSNIKANVDSLSRGKDY-PGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQE-PPFKFNLFEYSPESLM 100 (945) Q Consensus 23 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~-pp~~f~L~~~s~~sl~ 100 (945) .-.+|++-|...-|---+ ..++..+- ++++..+..... -..-..++.+....|. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~i~~~~~yy~g~~~~~~ 56 (496) T protein:vir:38 1 MINQIIAGVKGVMRRMGLLKALKDVKD------------------------HKKVNANDEDYKYIDMWKRLYQGHYAEWH 56 (496) T ss_pred ChhHHHHHHHHHHHHhccchhhHHHHh------------------------cCCCcCCHHHHHHHHHHHHHhcCCCchhh Confidence 223333333222221000 11111111 111111100000 0000011222211121 Q ss_pred eccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCCh Q lcl|Aclame:pro 101 YLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSE 180 (945) Q Consensus 101 ~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~ 180 (945) ..-....+. ......+........++..|+-+.+=|..+-- ++ ......+.+++.. | T Consensus 57 ~~~~~~~~~------~~~~~~~~~n~~k~i~~~~a~~l~~~p~~i~~---~d--------~~~~e~l~~~~~~-n----- 113 (496) T protein:vir:38 57 NLNYEHNGN------PVNRRQLSMNLPKVTAKYMSKLLFNEKVKINI---DD--------KAAEEFVLNVLKT-N----- 113 (496) T ss_pred cchhccCCC------ccccceeecchHHHHHHHHhhhhhCCcceEee---CC--------hHHHHHHHHHHhc-c----- Confidence 100000000 00001112233445666667666665655421 11 1111223444432 2 Q ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceE-EEEE--EeeCC------------- Q lcl|Aclame:pro 181 VNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIV-VGYV--QEVDG------------- 244 (945) Q Consensus 181 ~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~-~~Yv--~~~dG------------- 244 (945) .|++. ...++.+....|.+++.+..|.+|++ .+..++|..+.++..+.+... ..|+ +..+| T Consensus 114 -~f~~~-~~~~~~~a~~~G~~~~~~~~D~~~~~-~i~~v~~~~~~P~~~~~~~~~~~~f~~~~~~~~~~y~~le~h~~~~ 190 (496) T protein:vir:38 114 -GFTKN-MERYIEYGEAMGGFVIKVYHDGNKNV-KVSFATADCMYPLSNDSENVDECVIANSFHKNNKYYTLLEWNEWQG 190 (496) T ss_pred -CHHHH-HHHHHHHHhhhCcEEEEEEEcCCCcE-EEEEEcccceEEEEecCCcEEEEEEEEEEEeCCeEEEEEEEEEEeC Confidence 34443 44566777888999999888888876 578888888887666555431 0000 00000 Q ss_pred cee----eee---------------------------cccceeeeeeccCC----CCccCcccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 245 AIV----AHF---------------------------DKRDVVLFRQNLTP----DVYMYGYSLPPIEILYKVILSDIFI 289 (945) Q Consensus 245 ~~~----~~~---------------------------~a~DVIh~r~n~~~----d~~~~GyGlSPI~aa~~~I~~~~aa 289 (945) ... ..+ ..-+...|.+..++ .....++|+|.+..+...++....+ T Consensus 191 ~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~ 270 (496) T protein:vir:38 191 DVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLPDFTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLM 270 (496) T ss_pred ceEEEEEEEEecCCccccCccccccccccccccceeecCCCcceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHH Confidence 000 000 00011112111111 1122357999998888888776655 Q ss_pred HHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHH Q lcl|Aclame:pro 290 DKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQF 369 (945) Q Consensus 290 ee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~Qf 369 (945) .....+-|.. | ++..++ ............+. . ...+....+....+ ...-.+++..++..+.....-++ T Consensus 271 ~s~~~~~~~~-~-~~~i~v-~~~~l~~~~~~~g~-~---~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~i~~e~~ 339 (496) T protein:vir:38 271 FDSYYQEFKL-G-KKKVLV-PSSFVKTAVNLDGS-T---TQYFDSTDEAFFLY----QGDQDDNGKAIKDISVEIRSTEF 339 (496) T ss_pred HHHHHHHHhh-c-ccceec-chHHhhccCCCCCc-c---ccCCCCccceEEEe----ecCCCcccccceeeccccCHHHH Confidence 5555555543 3 222222 10000000000000 0 00000000000000 00111223345555555556678 Q ss_pred HHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhc-c--cc Q lcl|Aclame:pro 370 KELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLMATISKGFDEVVS-E--FR 433 (945) Q Consensus 370 lE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~~IEqeLn~kL~-~--~~ 433 (945) .+..+....+|+...|+||..+|....+.. ++.+. ....++.+|+.+++.+-+..+.... . .. T Consensus 340 ~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~-tAtei~~~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~g~~~ 418 (496) T protein:vir:38 340 IESINAMLRIYAMQVGLSAGTFTFDENGLK-TATEVVSEKSETYQTKNSHSQLIEQGIKEMIVSILEVGKFIEAYSGEVV 418 (496) T ss_pred HHHHHHHHHHHHHhhCCChhhcCCCccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC Confidence 888889999999999999999997654432 22222 1122233344443333322221111 1 11 Q ss_pred ccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCccccc Q lcl|Aclame:pro 434 NEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQ 513 (945) Q Consensus 434 ~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~ 513 (945) ....+.+.|+.....|.++.++...+++.+|+|+.-.+++.. +-+.+.+... -++....+.+... + T Consensus 419 ~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~~--~~~~d~ea~~------el~ri~~E~~~~~-~----- 484 (496) T protein:vir:38 419 ELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIALQRA--WNITEAEADE------WAEMLAKEKQAEM-P----- 484 (496) T ss_pred CccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhc--CCCChHHHHH------HHHHHHHhhhccC-c----- Confidence 223467888888888999999999999999999988776543 1111111000 0000000000000 0 Q ss_pred ccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 514 AMADQPSQQGGGVDENS 530 (945) Q Consensus 514 ~~~d~~~~~~g~~dd~e 530 (945) ..+..+. .+ +.+ T Consensus 485 -~~d~~~~-~~---~~e 496 (496) T protein:vir:38 485 -NNDMNGI-FG---EEE 496 (496) T ss_pred -cccccCC-CC---CCC Confidence 0000000 00 000 No 157 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=98.33 E-value=1.3e-06 Score=52.93 Aligned_cols=364 Identities=12% Similarity=0.052 Sum_probs=144.6 Q ss_pred ccccCcccceec-cccCCcccchhhhhhHHhh---------------------hccHHHHHHHHHHHHhhccCceEEEEe Q lcl|Aclame:pro 91 LFEYSPESLMYL-PSISDPDAFFLINLFRKYR---------------------FNNDSKLIKVSEIPKKLTSKELEIYKH 148 (945) Q Consensus 91 L~~~s~~sl~~l-ps~s~p~~~~~~~v~~~~A---------------------m~nsaV~aCV~iIA~~IAsLP~~VyRr 148 (945) +.+-...-+..+ ..+..-. .....+.+++ .-+....-+|+..++.+--.. ++ T Consensus 1 ~~~~~~~~i~~l~~~~~~~~--~r~~~l~~Yy~G~~~i~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~g---~~- 74 (441) T protein:vir:80 1 MNSDELALIEGMYDRIQRLS--SWHCCIEGYYEGSNRVRDLGVAIPPELQRVQTVVSWPGIAVDALEERLDWLG---WT- 74 (441) T ss_pred CCccHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCcchhcCcccchhhhhhhhhcchHHHHHHHHHhhhcccc---cc- Confidence 111100000000 0000000 0000000000 011111222222222210000 10 Q ss_pred ccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEE Q lcl|Aclame:pro 149 IEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPIL 228 (945) Q Consensus 149 tedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~ 228 (945) .. .+..+.+++.. |. +......+..+.+.+|.+|..+.++..|.+ .+.+++|..+.++. T Consensus 75 ~~------------d~~~l~~i~~~-n~-------~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~-~i~~~~p~~~~~i~ 133 (441) T protein:vir:80 75 NG------------DGYGLDGVYAA-NR-------LATASCDVHLDALIFGLSFVAIIPHGDGTV-SVRPQSPKNCTGKF 133 (441) T ss_pred CC------------ChHHHHHHHHh-cC-------HHHHHHHHHHHHhhcCeeEEEEEeCCCCce-EEEEEccceEEEEE Confidence 00 01123333322 21 123455677888999999999999999987 58899999998887 Q ss_pred cCCCc-eEEE---EEEeeCCce-eeeecccce--------------------------eeeeeccCCCCccCcccccHH- Q lcl|Aclame:pro 229 SEDTG-IVVG---YVQEVDGAI-VAHFDKRDV--------------------------VLFRQNLTPDVYMYGYSLPPI- 276 (945) Q Consensus 229 d~dG~-~~~~---Yv~~~dG~~-~~~~~a~DV--------------------------Ih~r~n~~~d~~~~GyGlSPI- 276 (945) ++..+ .... |....++.. ...+.++.+ +++..+.. ....+|.|.+ T Consensus 134 d~~~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~---~~~~~G~s~l~ 210 (441) T protein:vir:80 134 SADGSRLDAGLVVQQTCDPEVVEAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVNRRR---TSRIDGRSEIT 210 (441) T ss_pred eCCCCceeEEEEEEEEecCceEEEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEeecccc---CCccCCcccch Confidence 75432 2211 111111111 111222222 23221111 1123566644 Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccC- Q lcl|Aclame:pro 277 ---EILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG- 352 (945) Q Consensus 277 ---~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~- 352 (945) ..+.+.+.....-......+|. .|--++. +. .+++..... |+... +++..++ T Consensus 211 ~~v~~liDa~~~~~s~~~~~~~~~~----~~~~~i~--G~---------~~~~~~~~~----~~~~~-----~~i~~~~~ 266 (441) T protein:vir:80 211 RSIRAYTDEAVRTLLGQSVNRDFYA----YPQRWVT--GV---------SADEFSQPG----WVLSM-----ASVWAVDK 266 (441) T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc----Cceeeee--cC---------Cccccccch----hhhcc-----cccccCCC Confidence 3334444433333333344442 2333332 11 111111111 11111 1122222 Q ss_pred ----CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHH-------------HHHHHHHH Q lcl|Aclame:pro 353 ----GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMAS-------------LTKAKGLE 415 (945) Q Consensus 353 ----~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~-------------~F~~~tL~ 415 (945) .+.++..+..... ..+++..+..+..|+..-++|++.+|.....+.| .++... ..+..+|+ T Consensus 267 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~~~~S-g~Al~~~~~~l~~k~~~~~~~f~~~l~ 344 (441) T protein:vir:80 267 DDDGDTPNVGSFPVNSP-TPYSDQMRLLAQLTAGEAAVPERYFGFITSNPPS-GEALAAEESRLVKRAERRQTSFGQGWL 344 (441) T ss_pred CCCCCcceeEecCccch-HHHHHHHHHHHHHHhcccCCCHHHhccCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1345544443222 2467778888999999999999999865432222 222211 11122222 Q ss_pred HHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCH--HHHHHHHhCCCCCCccccccccccc Q lcl|Aclame:pro 416 PLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSI--NEARMEKGLEPVPWGDVPFSGLRNW 493 (945) Q Consensus 416 Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~--NEaRe~lGlpPveGGD~~l~~~n~~ 493 (945) -.++.+...++...........+.+.|......+..+.++++.++.++|++.. ..+++.+|+.+-+-. T Consensus 345 ~~~~l~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~~~~l~~~~~e~~---------- 414 (441) T protein:vir:80 345 SVGFLAAKALDSRVDEADFFGDVGLRWRDASTPTRAATADAVTKLVGAGILPADSRTVLEMLGLDDVQVE---------- 414 (441) T ss_pred HHHHHHHHHhcCCCcccccceeeeEEeCCCCCcCHHHHHHHHHHHHhcCcccccHHHHHHhCCCCHHHHH---------- Confidence 22222211111111111112346778888888899999999999999997643 346666665432110 Q ss_pred cccccchhhccCCCCcccccccCCCCCCCCCCC Q lcl|Aclame:pro 494 KPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGV 526 (945) Q Consensus 494 ~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~ 526 (945) .......+++ ++..+..+..+.+ +++- T Consensus 415 ~~~~e~~e~~-----~~~~~~~~~~~~~-~~~~ 441 (441) T protein:vir:80 415 AVMRHRAESS-----DPLAVLAGAISRQ-TNEV 441 (441) T ss_pred HHHHHHHHHH-----HHHHHHhhhhhcc-cccC Confidence 0010000000 0000000000000 0000 No 158 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=98.32 E-value=1.3e-06 Score=52.79 Aligned_cols=406 Identities=11% Similarity=0.102 Sum_probs=155.6 Q ss_pred cccccccccCCCCCcccccCccccee-----ccccC----------Ccccc---hhh---hhhHHhhhccHHHHHHHHHH Q lcl|Aclame:pro 76 IIVPYNHQEPPFKFNLFEYSPESLMY-----LPSIS----------DPDAF---FLI---NLFRKYRFNNDSKLIKVSEI 134 (945) Q Consensus 76 ~i~p~~~r~pp~~f~L~~~s~~sl~~-----lps~s----------~p~~~---~~~---~v~~~~Am~nsaV~aCV~iI 134 (945) ..++...-.+. .++.+.. +..+. ..... ... .-.+..........-+|+.. T Consensus 1 ~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~rl~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~ 72 (484) T protein:vir:77 1 MTSPLQKQENV--------DPEKAREEMLNLFTERTQDLGDNTAYYESERRPDAVGVTVPQQMQKLLAHVGYPRLYIDAI 72 (484) T ss_pred CCCcccccCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccccchhHHhhhhhcCcHHHHHHHH Confidence 11111110100 0000000 00000 00000 000 00011111112223344444 Q ss_pred HHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeE- Q lcl|Aclame:pro 135 PKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNL- 213 (945) Q Consensus 135 A~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~p- 213 (945) ++.+--.+|. .. ++. ..+..+.+++++ |.. ......+..+.+.+|.+|..+.++..|.+ T Consensus 73 ~~~l~~~g~~---~~-~~~--------~~~~~l~~i~~~-N~~-------d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~ 132 (484) T protein:vir:77 73 AARQELEGFR---LG-GAD--------KADEQLWDWWQA-NDL-------DIESTLGHTDSLVHGRSYITISKPDPNIDP 132 (484) T ss_pred HhhhccCcee---cC-Ccc--------hhHHHHHHHHHh-cCH-------hHHHHHHHHHHhhcCceEEEEecCCCCccc Confidence 4333222222 11 100 112234444432 321 23455677888999999999988888754 Q ss_pred ------EEEEEcCCceeEEEEcCCCce-EE--EEEEeeCCce---eeeecccce-------------------------e Q lcl|Aclame:pro 214 ------VAITPVDGTTIKPILSEDTGI-VV--GYVQEVDGAI---VAHFDKRDV-------------------------V 256 (945) Q Consensus 214 ------veL~pLdPs~Vtv~~d~dG~~-~~--~Yv~~~dG~~---~~~~~a~DV-------------------------I 256 (945) ..+.+++|..+.++.++..+. .. .|+...+++. ...+.++.+ + T Consensus 133 ~~~~~~~~i~~~~p~~~~~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv 212 (484) T protein:vir:77 133 GVDPEVPIIRVEPPTNLYAQIDPRTRQVMRAIRAIEDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVI 212 (484) T ss_pred ccccccceEEEeccceeEEEecCCCCceEEEEEEEEeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcceE Confidence 257888999998877654222 11 1111111111 011222222 3 Q ss_pred eeeeccCCCCccCcccccHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHH Q lcl|Aclame:pro 257 LFRQNLTPDVYMYGYSLPPIE----ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESI 332 (945) Q Consensus 257 h~r~n~~~d~~~~GyGlSPI~----aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erl 332 (945) ++..+. . .....|.|.+. .+.+.+.....-......+|. .|--++. +.. ......+.. +- T Consensus 213 ~f~N~~--~-~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~a----~p~~~i~--G~~------~~~~~~~~~-~~ 276 (484) T protein:vir:77 213 PIPNRT--R-LSDLYGTTEITPELRSVTDAAARTLMLMQATAELMG----VPQRLLF--GVK------GEELGVDPE-TG 276 (484) T ss_pred Eecccc--c-cCccCCcccchHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHh--CCC------cchhccccc-cc Confidence 332111 1 11224665443 333343333332233333332 2222221 000 000000000 00 Q ss_pred HHHHHHHhcCcccCcccccC-CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHH Q lcl|Aclame:pro 333 QRQLQAIMMGDYTQVPILSG-GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKA 411 (945) Q Consensus 333 Ke~we~~~sG~Nagkp~VL~-~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~ 411 (945) ...|+.. .+....++ ++.++.++....-+ .+++..+..+.+|+..-++|++.+|.... |.++.++....+.. T Consensus 277 ~~~~~~~-----~~~~~~~~~~~~~~~q~~~~~~e-~~~~~l~~~i~~~s~~~~~p~~~fg~~~~-n~~Sg~Al~~~~~~ 349 (484) T protein:vir:77 277 QTLFDAY-----LARILAFEDHESKAQQFSAAELR-NFVDALDALDRKAAAYTGLPPYYLSFSSE-NPASAEAIRSSESR 349 (484) T ss_pred chhhhhh-----hhhhcccCCCCceeEeecCCChH-HHHHHHHHHHHHHhcccCCCHHHhccccC-cchHHHHHHHHHHH Confidence 1112211 12233333 56787776654433 47788888899999999999999985433 22222332211110 Q ss_pred --HHHHHHHHHHHHHHHHhh------ccc----cccceeEEEeechhhcCHHHHHHHHHHHHhCC--CcCHHHHHHHHhC Q lcl|Aclame:pro 412 --KGLEPLMATISKGFDEVV------SEF----RNEKDIKLWFKEDDLEKERDWWNIIQGQLNTG--FRSINEARMEKGL 477 (945) Q Consensus 412 --~tL~Pll~~IEqeLn~kL------~~~----~~~~g~~f~fd~~~l~D~kerae~~~~~v~~G--imT~NEaRe~lGl 477 (945) ....-..+.+...+.+.+ ... .....+++.|......+..+.++.+.+++++| +++..-+++++|+ T Consensus 350 l~~ka~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~l~~ 429 (484) T protein:vir:77 350 LVKTVERKNKIFGGAWEQAMRVAYKVMNGGDIPPEYYRMESIWRDPSTPTYAAKADAATKLYNNGQGVIPKERARIDMGY 429 (484) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccceEEecCCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhcCCC Confidence 011111122222222111 000 11134677887777778889999999998875 8888888888887 Q ss_pred CCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhHHHHH Q lcl|Aclame:pro 478 EPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAGL 541 (945) Q Consensus 478 pPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a~~ 541 (945) -+-+-.. +-.... -+...+.+..+...+..++.++++ +..+..+..++..+.+.. T Consensus 430 ~~~~~~e--~~~~~~--ee~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 484 (484) T protein:vir:77 430 SITEREE--MRKWDE--EEQAQGLGLMGTMFGTDPSGGGNP-----DNPETPEPQPNPAEEAAA 484 (484) T ss_pred ChhHHHH--HHHHHH--HHHHHHHHHHhhhccccccCCCCC-----CCCCcccccCCCccccCC Confidence 4432110 000000 000000000000000000111111 111111111111111000 No 159 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=98.30 E-value=1.5e-06 Score=52.50 Aligned_cols=404 Identities=10% Similarity=0.019 Sum_probs=164.6 Q ss_pred hccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHH Q lcl|Aclame:pro 53 AWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVS 132 (945) Q Consensus 53 ~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~ 132 (945) -=+.|-. -++ ++|.++-..-.+-..+. ...+++.. .+..++. ..+.. +..... ...+.....+|+ T Consensus 1 ~~~~t~~-~~~----~~l~~~~~~~~~r~~~l----~~Yy~g~~-~i~~~~~-~~~~~--~~~~~~--k~~~n~~~~ivd 65 (456) T protein:vir:10 1 MTASTPA-EWL----PVLTKRIDDGMSRVRLL----ARYSNGDA-PLPELTR-NTSAA--WRSFQR--EARTNWGLMVRD 65 (456) T ss_pred CCCCCHH-HHH----HHHHHHHHHHHHHHHHH----HHHHhcCC-CchhcCc-ccChh--hhhhhh--hhhcchHHHHHH Confidence 0000000 000 00000000000000000 00011100 0000000 00000 000001 122345566777 Q ss_pred HHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCe Q lcl|Aclame:pro 133 EIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGN 212 (945) Q Consensus 133 iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~ 212 (945) ..++.+-.-|+.+- ...+.+ .+..+.+++.+ |.. . .....+..+.+.+|.+|..+..+..|. T Consensus 66 ~~~~~l~~~~~~~~-~~~d~~---------~~~~~~~i~~~-N~~-d------~~~~~~~~~a~i~G~ay~~v~~d~~g~ 127 (456) T protein:vir:10 66 SVADRIIPNGITVG-GSADSD---------LALRARRIWRD-NRM-D------SVCKQWVKYGLDFGESYLTCWRRDDGT 127 (456) T ss_pred HHHhhhccCCeecC-CCCCcc---------hHHHHHHHHHh-cCh-h------hHHHHHHHHHhhcCeeEEEEeeCCCCc Confidence 77777766677542 111110 11224455543 321 1 223456778889999999988899997 Q ss_pred EEEEEEcCCceeEEEEcCCCceE----EEEEEeeCCceee--eeccc------------------------ce------e Q lcl|Aclame:pro 213 LVAITPVDGTTIKPILSEDTGIV----VGYVQEVDGAIVA--HFDKR------------------------DV------V 256 (945) Q Consensus 213 pveL~pLdPs~Vtv~~d~dG~~~----~~Yv~~~dG~~~~--~~~a~------------------------DV------I 256 (945) + .+..++|..+.++.++..+.. .+|+...++.... .+... +. . T Consensus 128 ~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (456) T protein:vir:10 128 A-TITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDA 206 (456) T ss_pred e-EEEEEccceeEEEEcCCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeecccc Confidence 6 478889999988877554221 1122222221110 00000 00 0 Q ss_pred eeeeccCCC-CccCcccccHHHHHHHHHHHHHHHHHH---HHHHHHhCCCCceEEEEeccc-cccccccchhccHHHHHH Q lcl|Aclame:pro 257 LFRQNLTPD-VYMYGYSLPPIEILYKVILSDIFIDKG---NLDYYRKGGSIPEGILAIEPP-SYKEGDIYPQLSREQLES 331 (945) Q Consensus 257 h~r~n~~~d-~~~~GyGlSPI~aa~~~I~~~~aaee~---~a~~F~nnGa~PsGILs~k~g-~~~~~k~~~~LS~Eq~er 331 (945) |+.....|- ......|.|.++.....++....+.-. ...++. .|--++.-... ..........++ T Consensus 207 ~~~~~~~pvv~~~N~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a----~~~~~i~G~~~~~~~~d~~g~~~~------ 276 (456) T protein:vir:10 207 VVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQA----FRQRALKSTEHGLPNVDENGNAID------ 276 (456) T ss_pred CCCCCceeEEEecCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhh----hHhHhhhccCcccccccccccccc------ Confidence 000000000 001123666666655555443322221 122221 12112210000 000000000111 Q ss_pred HHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHH Q lcl|Aclame:pro 332 IQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKA 411 (945) Q Consensus 332 lKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~ 411 (945) ....|+.. .+..+.+++|.++..+..... ..+.+..+..+.+|++.=++|++.+|.... |.| .++.. +.. T Consensus 277 ~~~~~~~~-----~~~~~~~~~~~~~~q~~~~~~-~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~-N~S-g~Ai~--~~~ 346 (456) T protein:vir:10 277 YASIFEAA-----PGALWELPPGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQS-AEGAH--NIE 346 (456) T ss_pred hhhhhhhh-----ccccccCCCCcceEEecccCh-hHHHHHHHHHHHHHHhccCCChHHhccccc-ChH-HHHHH--HHH Confidence 11123221 123445678888877654332 248888999999999999999999975322 221 22211 111 Q ss_pred HHHHH----HHHHHHHHHHHhh---c---cccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCC Q lcl|Aclame:pro 412 KGLEP----LMATISKGFDEVV---S---EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVP 481 (945) Q Consensus 412 ~tL~P----ll~~IEqeLn~kL---~---~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPve 481 (945) ..+.- ..+.+...+.+.+ . .......+++.|......+..+.++++.++.+.|+++..-+++++|+.|-+ T Consensus 347 ~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~ 426 (456) T protein:vir:10 347 KGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQ 426 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHH Confidence 11111 2223333332211 1 111223567888887778889999999999999999988888888775421 Q ss_pred Cccccccccccccccccc-hhhccCCCCcccccccCCCCCCCCCC Q lcl|Aclame:pro 482 WGDVPFSGLRNWKPEDEQ-AKAQQGAMPPQLAQAMADQPSQQGGG 525 (945) Q Consensus 482 GGD~~l~~~n~~~ped~~-a~~~~~a~~~~~~~~~~d~~~~~~g~ 525 (945) ... .+.. ...+.++..... .+.+.+++.. T Consensus 427 ---i~~--------~e~er~~~e~~~~~~~~----~~~~~~~~~~ 456 (456) T protein:vir:10 427 ---IKQ--------DDLDRAREQITLFAGNP----VQRPQEDGSR 456 (456) T ss_pred ---HHH--------HHHHHHHHHHHHHhhhh----hhcCCCCCCC Confidence 000 0000 001111000000 0111111100 No 160 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=98.30 E-value=1.5e-06 Score=52.50 Aligned_cols=404 Identities=10% Similarity=0.019 Sum_probs=164.6 Q ss_pred hccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHH Q lcl|Aclame:pro 53 AWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVS 132 (945) Q Consensus 53 ~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~ 132 (945) -=+.|-. -++ ++|.++-..-.+-..+. ...+++.. .+..++. ..+.. +..... ...+.....+|+ T Consensus 1 ~~~~t~~-~~~----~~l~~~~~~~~~r~~~l----~~Yy~g~~-~i~~~~~-~~~~~--~~~~~~--k~~~n~~~~ivd 65 (456) T protein:vir:10 1 MTASTPA-EWL----PVLTKRIDDGMSRVRLL----ARYSNGDA-PLPELTR-NTSAA--WRSFQR--EARTNWGLMVRD 65 (456) T ss_pred CCCCCHH-HHH----HHHHHHHHHHHHHHHHH----HHHHhcCC-CchhcCc-ccChh--hhhhhh--hhhcchHHHHHH Confidence 0000000 000 00000000000000000 00011100 0000000 00000 000001 122345566777 Q ss_pred HHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCe Q lcl|Aclame:pro 133 EIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGN 212 (945) Q Consensus 133 iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~ 212 (945) ..++.+-.-|+.+- ...+.+ .+..+.+++.+ |.. . .....+..+.+.+|.+|..+..+..|. T Consensus 66 ~~~~~l~~~~~~~~-~~~d~~---------~~~~~~~i~~~-N~~-d------~~~~~~~~~a~i~G~ay~~v~~d~~g~ 127 (456) T protein:vir:10 66 SVADRIIPNGITVG-GSADSD---------LALRARRIWRD-NRM-D------SVCKQWVKYGLDFGESYLTCWRRDDGT 127 (456) T ss_pred HHHhhhccCCeecC-CCCCcc---------hHHHHHHHHHh-cCh-h------hHHHHHHHHHhhcCeeEEEEeeCCCCc Confidence 77777766677542 111110 11224455543 321 1 223456778889999999988899997 Q ss_pred EEEEEEcCCceeEEEEcCCCceE----EEEEEeeCCceee--eeccc------------------------ce------e Q lcl|Aclame:pro 213 LVAITPVDGTTIKPILSEDTGIV----VGYVQEVDGAIVA--HFDKR------------------------DV------V 256 (945) Q Consensus 213 pveL~pLdPs~Vtv~~d~dG~~~----~~Yv~~~dG~~~~--~~~a~------------------------DV------I 256 (945) + .+..++|..+.++.++..+.. .+|+...++.... .+... +. . T Consensus 128 ~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (456) T protein:vir:10 128 A-TITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDA 206 (456) T ss_pred e-EEEEEccceeEEEEcCCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeecccc Confidence 6 478889999988877554221 1122222221110 00000 00 0 Q ss_pred eeeeccCCC-CccCcccccHHHHHHHHHHHHHHHHHH---HHHHHHhCCCCceEEEEeccc-cccccccchhccHHHHHH Q lcl|Aclame:pro 257 LFRQNLTPD-VYMYGYSLPPIEILYKVILSDIFIDKG---NLDYYRKGGSIPEGILAIEPP-SYKEGDIYPQLSREQLES 331 (945) Q Consensus 257 h~r~n~~~d-~~~~GyGlSPI~aa~~~I~~~~aaee~---~a~~F~nnGa~PsGILs~k~g-~~~~~k~~~~LS~Eq~er 331 (945) |+.....|- ......|.|.++.....++....+.-. ...++. .|--++.-... ..........++ T Consensus 207 ~~~~~~~pvv~~~N~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a----~~~~~i~G~~~~~~~~d~~g~~~~------ 276 (456) T protein:vir:10 207 VVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQA----FRQRALKSTEHGLPNVDENGNAID------ 276 (456) T ss_pred CCCCCceeEEEecCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhh----hHhHhhhccCcccccccccccccc------ Confidence 000000000 001123666666655555443322221 122221 12112210000 000000000111 Q ss_pred HHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHH Q lcl|Aclame:pro 332 IQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKA 411 (945) Q Consensus 332 lKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~ 411 (945) ....|+.. .+..+.+++|.++..+..... ..+.+..+..+.+|++.=++|++.+|.... |.| .++.. +.. T Consensus 277 ~~~~~~~~-----~~~~~~~~~~~~~~q~~~~~~-~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~-N~S-g~Ai~--~~~ 346 (456) T protein:vir:10 277 YASIFEAA-----PGALWELPPGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQS-AEGAH--NIE 346 (456) T ss_pred hhhhhhhh-----ccccccCCCCcceEEecccCh-hHHHHHHHHHHHHHHhccCCChHHhccccc-ChH-HHHHH--HHH Confidence 11123221 123445678888877654332 248888999999999999999999975322 221 22211 111 Q ss_pred HHHHH----HHHHHHHHHHHhh---c---cccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCC Q lcl|Aclame:pro 412 KGLEP----LMATISKGFDEVV---S---EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVP 481 (945) Q Consensus 412 ~tL~P----ll~~IEqeLn~kL---~---~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPve 481 (945) ..+.- ..+.+...+.+.+ . .......+++.|......+..+.++++.++.+.|+++..-+++++|+.|-+ T Consensus 347 ~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~ 426 (456) T protein:vir:10 347 KGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQ 426 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHH Confidence 11111 2223333332211 1 111223567888887778889999999999999999988888888775421 Q ss_pred Cccccccccccccccccc-hhhccCCCCcccccccCCCCCCCCCC Q lcl|Aclame:pro 482 WGDVPFSGLRNWKPEDEQ-AKAQQGAMPPQLAQAMADQPSQQGGG 525 (945) Q Consensus 482 GGD~~l~~~n~~~ped~~-a~~~~~a~~~~~~~~~~d~~~~~~g~ 525 (945) ... .+.. ...+.++..... .+.+.+++.. T Consensus 427 ---i~~--------~e~er~~~e~~~~~~~~----~~~~~~~~~~ 456 (456) T protein:vir:10 427 ---IKQ--------DDLDRAREQITLFAGNP----VQRPQEDGSR 456 (456) T ss_pred ---HHH--------HHHHHHHHHHHHHhhhh----hhcCCCCCCC Confidence 000 0000 001111000000 0111111100 No 161 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=98.29 E-value=1.6e-06 Score=52.37 Aligned_cols=406 Identities=9% Similarity=0.072 Sum_probs=151.1 Q ss_pred CCCCCcccccCcccceec----cccCC--cc-----------c---chhhhh---hHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 85 PPFKFNLFEYSPESLMYL----PSISD--PD-----------A---FFLINL---FRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 85 pp~~f~L~~~s~~sl~~l----ps~s~--p~-----------~---~~~~~v---~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) .+++.++.+-......-+ ..|.. +. . .....+ .+..........-+|+.+++.+--. T Consensus 1 ~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~~~~~~~~~~v~n~~~~iVd~~~~~l~~~ 80 (486) T protein:vir:42 1 MTAPLPGMEEIEDPAVVREEMISAFEDASKDLASNTSYYDAERRPEAIGVTVPREMQQLLAHVGYPRLYVDSVAERQAVE 80 (486) T ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhcccccchhHhhhhhccchHHHHHHHHHhhhccc Confidence 111111111110000000 00000 00 0 000000 0000001122233344333333222 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeE-------E Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNL-------V 214 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~p-------v 214 (945) +|. .. ++ ...+..+.+++.+ |.. ......+..+.+.+|.+|..+.++..|.. . T Consensus 81 g~~---~~-~~--------~~~~~~~~~i~~~-N~~-------d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~ 140 (486) T protein:vir:42 81 GFR---LG-DA--------DEADEELWQWWQA-NNL-------DIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVP 140 (486) T ss_pred cee---cC-CC--------chhHHHHHHHHHh-cCh-------hHHHHHHHHHHhhcCceEEEEecCCcccccccCCCee Confidence 221 11 10 0011224444432 321 12345577888999999999887764432 3 Q ss_pred EEEEcCCceeEEEEcCCC-ceEEEE--EEeeCCce---eeeecccceeeeeec-----------------------cCCC Q lcl|Aclame:pro 215 AITPVDGTTIKPILSEDT-GIVVGY--VQEVDGAI---VAHFDKRDVVLFRQN-----------------------LTPD 265 (945) Q Consensus 215 eL~pLdPs~Vtv~~d~dG-~~~~~Y--v~~~dG~~---~~~~~a~DVIh~r~n-----------------------~~~d 265 (945) .+.+++|..+.++.++.. .....+ .+..+++. ...+.++.+++++.. +++. T Consensus 141 ~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~~~n~~~ 220 (486) T protein:vir:42 141 IIRVEPPTRMHAEIDPRINRVSKAIRVAYDKEGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPNRTR 220 (486) T ss_pred EEEEecccceEEEEeCCCCCeEEEEEEEEecCCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCceEEEeccccc Confidence 678899999988876432 222211 11111211 112222222222110 1111 Q ss_pred CccCcccccHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 266 VYMYGYSLPPIE----ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMM 341 (945) Q Consensus 266 ~~~~GyGlSPI~----aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~s 341 (945) ..+.+|.|.+. .+.+.+.....-......+|. .|--++. +.. . .....+. .+-...|+. T Consensus 221 -~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~e~~a----~p~~~i~--G~~-~-----~~~~~~~-~~~~~~~~~--- 283 (486) T protein:vir:42 221 -LSDLYGTSEITPELRSMTDAAARILMLMQATAELMG----VPQRLIF--GIK-P-----EEIGVDS-ETGQTLFDA--- 283 (486) T ss_pred -cCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhc----chHHHhh--cCC-c-----ccccccc-ccccchhhh--- Confidence 11225666443 333444433332222333332 2222221 000 0 0000000 000011221 Q ss_pred CcccCccccc-CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHH-------------H Q lcl|Aclame:pro 342 GDYTQVPILS-GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMA-------------S 407 (945) Q Consensus 342 G~Nagkp~VL-~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~-------------~ 407 (945) ..+....+ +++.++.++.....+ .+++..+..+.+++..=++|++.+|....+ .++.++.. . T Consensus 284 --~~~~~~~~~~~~~~~~q~~~~~~e-~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n-~~Sg~Al~~~~~~l~~ka~~~~ 359 (486) T protein:vir:42 284 --YLARILAFEDAEGKIQQFSAAELA-NFTNALDQIAKQVAAYTGLPPQYLSTAADN-PASAEAIRAAESRLIKKVERKN 359 (486) T ss_pred --hhchhcccCCCCceEEeecccCHH-HHHHHHHHHHHHHhcccCCCHHHhccccCc-hhHHHHHHHHHHHHHHHHHHHH Confidence 11223333 356777666543322 477888888899999999999999754432 12222221 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhC--CCcCHHHHHHHHhCCCCCCccc Q lcl|Aclame:pro 408 LTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNT--GFRSINEARMEKGLEPVPWGDV 485 (945) Q Consensus 408 ~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~--GimT~NEaRe~lGlpPveGGD~ 485 (945) ..+...+.-+++.+....+..-.+ .....+.+.|......+..+.++++.+++++ |+++..-+++.+|+-+-+-.. T Consensus 360 ~~f~~~l~~~~~l~~~~~~~~~~~-~d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~lg~~~d~~~e- 437 (486) T protein:vir:42 360 LMFGGAWEEAMRIAYRIMKGGDVP-PDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARIDMGYSVKEREE- 437 (486) T ss_pred HHHHHHHHHHHHHHHHHhcCCCcc-ccceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhcCCCChhHHHH- Confidence 122223332222221111100001 1123567788888788888999999998876 678877788887774322110 Q ss_pred cccccccccccc-cchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhHHHH Q lcl|Aclame:pro 486 PFSGLRNWKPED-EQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAG 540 (945) Q Consensus 486 ~l~~~n~~~ped-~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a~ 540 (945) +-.. .-+. .......++......+.+.+ +.+++.+.+++..+....++ T Consensus 438 -~~~~---~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 486 (486) T protein:vir:42 438 -MRRW---DEEEAAMGLGLLGTMVDADPTVPGS---PSPTAPPKPQPAIESSGGDA 486 (486) T ss_pred -HHHH---HHHHHHHHHHHHHHhhcCCCCCCCC---CCCCCCCCCCcccCCCCCCC Confidence 0000 0000 00000000000000000000 00000000000000000000 No 162 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=98.22 E-value=2.4e-06 Score=51.35 Aligned_cols=384 Identities=10% Similarity=0.030 Sum_probs=166.1 Q ss_pred cCcccceeccccCCcccc-------------------------------hhh---hhhHHhhhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 94 YSPESLMYLPSISDPDAF-------------------------------FLI---NLFRKYRFNNDSKLIKVSEIPKKLT 139 (945) Q Consensus 94 ~s~~sl~~lps~s~p~~~-------------------------------~~~---~v~~~~Am~nsaV~aCV~iIA~~IA 139 (945) .+|.+...+|+.+..... ... ..++....-.....-||+.+++.+- T Consensus 1 ~~~~~~~~~~gl~~~~~~~~~~L~~~~~~~~~~~~~~~~Yy~G~~~~~~~~~~~p~~~r~~~~v~nw~~~~Vd~~a~rl~ 80 (474) T protein:vir:81 1 MIQQQTVRIPSLSNDENALINGLLAQIENLRWKNLLRTSYYENKRTIQYVGTLIPPQYFNLGLVLGWTGKAVDALARRCN 80 (474) T ss_pred CcCCCcCcCCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHhccCCChhhccccccHHHHHHHhhcChHHHHHHHHHhhhc Confidence 111111111111111000 000 1111111223344456666666444 Q ss_pred cCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeE-EEEEE Q lcl|Aclame:pro 140 SKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNL-VAITP 218 (945) Q Consensus 140 sLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~p-veL~p 218 (945) --.|. . .++. ..+..+.+++++ |... .....+..+.+.+|.+|+.+..+.+|.+ ..+.+ T Consensus 81 ~~Gf~---~-~d~~--------~~~~~l~~iw~~-N~ld-------~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~ 140 (474) T protein:vir:81 81 LEGFV---W-PDGD--------LDSLGGTEVVDD-NHLL-------SEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHV 140 (474) T ss_pred ccceE---C-CCCC--------ccchHHHHHHHh-cChh-------HHHHHHHHHHHhhCceeEEEecCCCCCceeEEEE Confidence 33332 1 1111 112334455532 3321 1234456778899999999988877764 46789 Q ss_pred cCCceeEEEEcCCCceE-EEE---EEeeCCcee--eeecccce-------------------------eeeeeccCCCCc Q lcl|Aclame:pro 219 VDGTTIKPILSEDTGIV-VGY---VQEVDGAIV--AHFDKRDV-------------------------VLFRQNLTPDVY 267 (945) Q Consensus 219 LdPs~Vtv~~d~dG~~~-~~Y---v~~~dG~~~--~~~~a~DV-------------------------Ih~r~n~~~d~~ 267 (945) ++|.++....|+..+.. ..+ ....+|... ..|.++.+ +++..++. . T Consensus 141 ~sp~~~~~~~D~~~~~~~~al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~gvPvV~~~n~~~--~- 217 (474) T protein:vir:81 141 KDASEATGEWNRRRRGLNNLLSIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYGVPAQVLPYKPA--P- 217 (474) T ss_pred eccceEEEEEeCCCCcceeeeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCCcceEEeccccc--c- Confidence 99999988776544321 111 111122111 11222222 22222111 1 Q ss_pred cCcccccH----HHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhc-- Q lcl|Aclame:pro 268 MYGYSLPP----IEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMM-- 341 (945) Q Consensus 268 ~~GyGlSP----I~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~s-- 341 (945) .+.+|.|. +..+.+.+.....-......||. .+-+.++=.... .. ...+.+....++........ T Consensus 218 ~~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e~~a---~pqr~i~G~~~~----~~--~d~d~~~~~~~~~~~~~i~~~~ 288 (474) T protein:vir:81 218 KRPFGQSRITKPMMGLQDAGVRELARREGHMDVFS---YPEFWLLGADES----AL--KNADGTIKSVWEARLGRIKGLP 288 (474) T ss_pred cCcCCccccchhHHHHHHHHHHHHHHHHHHHHHhc---chhheeecCChh----hc--ccccccccchhhhhHHHHhcCC Confidence 12356664 44444555444444444555553 333444311100 00 00011112233333333321 Q ss_pred -CcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHH--HHHHHHHH Q lcl|Aclame:pro 342 -GDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTK--AKGLEPLM 418 (945) Q Consensus 342 -G~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~--~~tL~Pll 418 (945) ++++.. ....+.++-++....- ..|++..+..+..+|..-++|++.+|+....|-++.+....... ....+-.. T Consensus 289 ~d~d~~~--~~~~~~~~~q~~~a~l-~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~kae~k~ 365 (474) T protein:vir:81 289 DDADADI--PQLARADVKQFPAASP-DAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIAEAEGAV 365 (474) T ss_pred Ccccccc--cccccccccccCCCCh-hHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHHHHHHH Confidence 122211 1223556666554332 24888999999999999999999999765555444444332221 11122233 Q ss_pred HHHHHHHHHhhc------cc-------cccceeEEEeechhhcCHHHHHHHHHHHHhCCC--cCHHHHHHHHhCCCCCCc Q lcl|Aclame:pro 419 ATISKGFDEVVS------EF-------RNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGF--RSINEARMEKGLEPVPWG 483 (945) Q Consensus 419 ~~IEqeLn~kL~------~~-------~~~~g~~f~fd~~~l~D~kerae~~~~~v~~Gi--mT~NEaRe~lGlpPveGG 483 (945) +.+.+.+.+.+. .. .....+++.|......+..++++++.++.++|. ....-+++++|+.|-+-. T Consensus 366 ~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~t~~~i~ 445 (474) T protein:vir:81 366 DDFTPALRKAFIRALAMKNKVAIDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLAAVPWLAETEVGLELIGLTPQQAR 445 (474) T ss_pred HHHHHHHHHHHHHHHHHhCCCCccccchhhccceeEecCCCccCHHHHHHHHHHHHhcccCCCcHHHHHhhcCCCHHHHH Confidence 333333332211 10 012245677777777788899999999999874 333446777887643110 Q ss_pred cccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCC Q lcl|Aclame:pro 484 DVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVD 527 (945) Q Consensus 484 D~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~d 527 (945) . .......++....-+.....+ .+++.+. T Consensus 446 ~----------~~~~~~~~~~~~~~~~l~~~~-----~~~~~aq 474 (474) T protein:vir:81 446 R----------AMADKRRVQGRGTLQALIDRS-----NNGATAQ 474 (474) T ss_pred H----------HHHHHHHHhHHHHHHHHHhcC-----CCCCCCC Confidence 0 000000000000000000000 0000000 No 163 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=98.09 E-value=4.8e-06 Score=49.76 Aligned_cols=435 Identities=11% Similarity=0.002 Sum_probs=169.2 Q ss_pred ccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccC-CCCCcccccCcccceecc Q lcl|Aclame:pro 25 SNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEP-PFKFNLFEYSPESLMYLP 103 (945) Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~p-p~~f~L~~~s~~sl~~lp 103 (945) -|+..- .-.|-.-+++-+...-=++++.++++-+|...... ..-..++.+-+..+.. T Consensus 1 m~~~~~--------------------ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~~-- 58 (517) T protein:vir:98 1 MKVIQR--------------------IKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEY-- 58 (517) T ss_pred CchHHH--------------------HHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHHHhcCCCccccc-- Confidence 111111 11111111111110000222233333222110000 0000111111111100 Q ss_pred ccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHH Q lcl|Aclame:pro 104 SISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNS 183 (945) Q Consensus 104 s~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eF 183 (945) .+..+.. ..+..........+.+.+|+-+..=|..|.-.+.+..+............+.++++. | .| T Consensus 59 ~~~~~~~------~~~~~~sl~~~~~i~~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~-n------~f 125 (517) T protein:vir:98 59 INSQGKI------QERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQH-N------KF 125 (517) T ss_pred ccccccc------cccceeecCcHHHHHHHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHh-c------cH Confidence 0000000 000001111112233334433332233332112121111111112222334444432 1 24 Q ss_pred HHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceEE----------------EEE---EeeCC Q lcl|Aclame:pro 184 WEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVV----------------GYV---QEVDG 244 (945) Q Consensus 184 wetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~----------------~Yv---~~~dG 244 (945) +..+ ...+.+.+..|.+++-+..+. |.+ .+..++|+.+.+...+.+++.. .|+ ....+ T Consensus 126 ~~~~-~~~~e~a~a~G~~a~k~~~d~-~~~-~I~~v~ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~ 202 (517) T protein:vir:98 126 IKNL-SDYLEPTFALGGLTVRPYVDN-GEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWE 202 (517) T ss_pred HHHH-HHHHHHHhhhCCEEEEEEEeC-Cee-EEEEEcCCeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecC Confidence 4443 334455566677777665553 433 4677777777664333222210 010 00000 Q ss_pred c-------ee---------------eeec--------ccce----------eeeeeccCCC--CccCcccccHHHHHHHH Q lcl|Aclame:pro 245 A-------IV---------------AHFD--------KRDV----------VLFRQNLTPD--VYMYGYSLPPIEILYKV 282 (945) Q Consensus 245 ~-------~~---------------~~~~--------a~DV----------Ih~r~n~~~d--~~~~GyGlSPI~aa~~~ 282 (945) + -+ ..++ +.++ .|+ +++.++ ....++|+|.+..+... T Consensus 203 ~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~~~~e~l~~~~~~~g~~~Plf~y~-~~p~~N~~~~~splG~S~~~~a~~~ 281 (517) T protein:vir:98 203 KTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYL-KPSGFNNINPHSPLGLGITDNSVST 281 (517) T ss_pred ceeccCCcEEEEEEEEecCCCccccccccccccccCCCcceeECCCCcceEEEe-cCCcccccccCCCCCCchhhhhHHH Confidence 0 00 0000 0111 111 111111 11246799999988888 Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccH---HHHHHHHHHHHHHhcCcccCcccccCCCceeee Q lcl|Aclame:pro 283 ILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSR---EQLESIQRQLQAIMMGDYTQVPILSGGKFTWID 359 (945) Q Consensus 283 I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~---Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~p 359 (945) +.....+.....+-|.- |-+ + |.............++...+ +..+++ +... .++ +++-.++. T Consensus 282 ~d~lD~~~s~~~~e~~~-g~~-~-i~vp~~~l~~~~~~~g~~~~~~~d~~~~~---y~~~-~~~--------~~~~~i~~ 346 (517) T protein:vir:98 282 LKKINDTYDQFWWEIKM-GQR-T-VFVSDVMLRTVPDESGMPPPQVFDPDVNV---YKSI-RMG--------TDEEFVKD 346 (517) T ss_pred HHHHHHHHHHHHHHHHh-CCc-c-eecChhhhccccCCCCcccCCCCCcccce---eeec-cCC--------CCCCceee Confidence 88766666555555643 433 2 22111111000000000000 000000 0000 000 12223566 Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHH--HHHHHHHHHHHHHHHHHHHHhh-------- Q lcl|Aclame:pro 360 FKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMAS--LTKAKGLEPLMATISKGFDEVV-------- 429 (945) Q Consensus 360 Ls~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~--~F~~~tL~Pll~~IEqeLn~kL-------- 429 (945) .+....+-++.+..+...+.|+...|++|..+|...++. .++.+... .-.-.++.-+.+.++.+|..++ T Consensus 347 ~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~~~~~-kTATEi~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~ 425 (517) T protein:vir:98 347 VTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAK 425 (517) T ss_pred eccccchHHHHHHHHHHHHHHHHHhCCCccccccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 666777789999999999999999999999999876554 34433211 1111234444444444444321 Q ss_pred ----cccc--ccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHH-hCCCCCCccccccccccccccccchhh Q lcl|Aclame:pro 430 ----SEFR--NEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEK-GLEPVPWGDVPFSGLRNWKPEDEQAKA 502 (945) Q Consensus 430 ----~~~~--~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~l-GlpPveGGD~~l~~~n~~~ped~~a~~ 502 (945) .... ....+.+.|+.....|.++.++...+++.+|+|++-+++.++ |+. ..+.. ..++ ..... T Consensus 426 ~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~~~v~aG~ms~~~~i~~~~g~~---eeeA~----~e~~---~i~~E 495 (517) T protein:vir:98 426 TYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVP---KKTAE----QWLE---EIRKD 495 (517) T ss_pred HHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHhCCCC---hHHHH----HHHH---HHHHh Confidence 1111 123467888888899999999999999999999999987664 542 11110 0000 00001 Q ss_pred ccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 503 QQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 503 ~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) ...+.+.+ ....+.++...+.+ T Consensus 496 ~~~~~~~~------~~~~~~~~~~gd~e 517 (517) T protein:vir:98 496 QIELDPVT------ISQRAQKRMFGDEE 517 (517) T ss_pred ccccCCCC------ccccccCCCCCCCC Confidence 11111100 00011111111111 No 164 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=98.08 E-value=5.2e-06 Score=49.57 Aligned_cols=410 Identities=9% Similarity=0.006 Sum_probs=165.1 Q ss_pred eeeecceeeeccccccccccccCCCCCccc-ccCcc-----ccee--ccccCCcccchhhhhhHHhhhccHHHHHHHHHH Q lcl|Aclame:pro 63 IIFRKNQVLKKEKIIVPYNHQEPPFKFNLF-EYSPE-----SLMY--LPSISDPDAFFLINLFRKYRFNNDSKLIKVSEI 134 (945) Q Consensus 63 ~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~-~~s~~-----sl~~--lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iI 134 (945) .=..+|.+|+-|+--.........+ .... ...++ ..+. -+-...+... ..-....+..+.....|+.. T Consensus 1 ~~~~~~~~~~~p~d~~~~~~~l~~~-i~~~~~~~~r~~~~~~yy~g~~~i~~~~~~~---~~~~~~ki~~n~~~~ivd~~ 76 (453) T protein:vir:39 1 MKYKPPKLMTFPKDEPITNEVVTKF-MEKHRLEVARYEYLKNMYRGIMAIDAEPTKD---LWKPDNRLTVNFTKYIVDTF 76 (453) T ss_pred CeecCCcceEcCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHhhccCchhcCCCcc---ccCccceeecchHHHHHHHH Confidence 4456777777665321111100000 0000 00000 0000 0000000000 00000112233444555555 Q ss_pred HHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEE Q lcl|Aclame:pro 135 PKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLV 214 (945) Q Consensus 135 A~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pv 214 (945) +.-+-+-|+.+- .+. ......+.+++.. |... .....+..+.+.+|.+|..+..+..|.+ T Consensus 77 ~~~l~g~~~~~~---~~d--------~~~~~~l~~i~~~-N~~~-------~~~~~~~~~~~~~G~~~~~v~~d~~g~~- 136 (453) T protein:vir:39 77 TGYFNGIPVKKS---HSD--------KETLSKLQEFDNL-NDME-------DEESELAKMACIYGRAFELLYQNEETQT- 136 (453) T ss_pred hhhhcccCceec---cCC--------hHHHHHHHHHHHh-cChh-------HHHHHHHHHHhhcCeEEEEEEecCCCce- Confidence 555555555431 000 0112234455543 3221 2345567788899999999999998876 Q ss_pred EEEEcCCceeEEEEcCCC-ceEE---EEEEeeCCce-eeeecccceeeeeecc----------CCCC-------ccCccc Q lcl|Aclame:pro 215 AITPVDGTTIKPILSEDT-GIVV---GYVQEVDGAI-VAHFDKRDVVLFRQNL----------TPDV-------YMYGYS 272 (945) Q Consensus 215 eL~pLdPs~Vtv~~d~dG-~~~~---~Yv~~~dG~~-~~~~~a~DVIh~r~n~----------~~d~-------~~~GyG 272 (945) .+..++|..+.++.++.. .... +|....+... ...+.++.+.++.... ++.+ .....| T Consensus 137 ~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g 216 (453) T protein:vir:39 137 NVIYNTPENMFMVYDDTIKQEPLFAVRYGYDDDYKLYGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFYFNEER 216 (453) T ss_pred EEEEEcccceEEEecCCCCCeEEEEEEEEEeCCeEEEEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEecCCCCC Confidence 577789999988876533 2221 1111111100 1112222222221100 0000 011245 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccC Q lcl|Aclame:pro 273 LPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG 352 (945) Q Consensus 273 lSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~ 352 (945) .|-++.+...++....+.....+.... .+.|..++.- ..++++....++.. ....- ... ...+ T Consensus 217 ~sd~e~v~~liDa~~~~~s~~~~~~~~-~~~p~~~~~g-----------~~~~~~~~~~~~~~--~~~~~-~~~--~~~~ 279 (453) T protein:vir:39 217 MSIFESVISLVNAFNKAISEKANDVDY-FSDQYLTFLG-----------AAVEEEDLKNIRSN--RVINY-YGE--SSEA 279 (453) T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHH-hhCceeeeec-----------CCCCchhhhhhhhc--ceeee-cCC--CCCC Confidence 555655444444333322222222222 2345445431 12333333333221 00000 000 1112 Q ss_pred CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHHH Q lcl|Aclame:pro 353 GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLMA 419 (945) Q Consensus 353 ~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~ 419 (945) .+.++..++.......+.+..+...+.|+..-++|..-.+.. ++.|+ ++. ....+..+++..++ T Consensus 280 ~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--gn~Sg-~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~ 356 (453) T protein:vir:39 280 KNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANISDESF--GSSSG-VSLAYKLQAMSNLALSFQRKFQSSLNSRYK 356 (453) T ss_pred CCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccc--cCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 333333344444455667788888999999999985332211 22221 111 12233444444444 Q ss_pred HHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccc Q lcl|Aclame:pro 420 TISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQ 499 (945) Q Consensus 420 ~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~ 499 (945) .+...++..- .......+.+.|......|..+.++++.++ .|+++...+.+.+++ +++.+.-+- .... T Consensus 357 li~~~~~~~~-~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl--~g~is~et~l~~l~~--v~D~~~E~~-----ri~~-- 424 (453) T protein:vir:39 357 LYCELSTNVS-NKEAWKDIEYTFTRNEPKDIKEQAETANIL--MGITSQETALSVISV--IPDVQAEME-----KIKK-- 424 (453) T ss_pred HHHHHHhccC-CccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHH-----HHHH-- Confidence 4433322211 112234567889888888999999988877 578998778777654 222111110 0000 Q ss_pred hhhccCCCCcccccccCCCCCCCCCCCCCCccccchhH Q lcl|Aclame:pro 500 AKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQK 537 (945) Q Consensus 500 a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k 537 (945) +........ .....+ +..++++.++..++ T Consensus 425 -E~~~~~~~~--~~~~~~------~~~~~~~~~~~~~e 453 (453) T protein:vir:39 425 -EEASTAIFD--KDKQPS------EKGTDTVVPETNEE 453 (453) T ss_pred -HHHHHHHHH--HhccCC------CCCCCCCCCCcCCC Confidence 000000000 000000 00111111111111 No 165 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=98.05 E-value=5.8e-06 Score=49.29 Aligned_cols=357 Identities=13% Similarity=0.123 Sum_probs=161.1 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsL 141 (945) +..++ .|+ .+. ...+.+. ..+..++ ...|... -. ...+-.....-+|+.+++.+-=- T Consensus 1 l~~~~-~r~-----------~~~----~~yY~g~-~~~~~~~-~~~p~~~--~~---~~~~v~nw~~~~Vds~a~rl~~~ 57 (410) T protein:vir:95 1 MNLYQ-SRV-----------NLR----YKHYAMQ-HYEAPTG-ITIPAHI--RA---KYQAVLGWAAKGVDSLADRLIFR 57 (410) T ss_pred CCcch-hhH-----------HHH----HHHhcCC-CCccccc-hhccHHH--Hh---HHHhhcchhHHHHHHhHhhhccc Confidence 11110 000 000 0011111 0000000 0111110 00 01122334455666666644322 Q ss_pred ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCC Q lcl|Aclame:pro 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) Q Consensus 142 P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdP 221 (945) .| + . .+..+.+++++ |.... ....+..+.+.+|.+|+.+..+.+|.| .+.+++| T Consensus 58 Gf---~-~-------------~d~~l~~i~~~-N~ld~-------~~~~~~~~al~~G~sf~~v~~~~d~~~-~i~~~sP 111 (410) T protein:vir:95 58 AF---A-N-------------DDFNVTEIFDR-NNPDI-------FFDSAILSALIGSCSFVYISKGEDDEV-RLQVIES 111 (410) T ss_pred cc---c-C-------------CCchHHHHHhh-cChHH-------HHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcc Confidence 22 1 1 11235555543 43221 233466778899999999999888886 6889999 Q ss_pred ceeEEEEcCCCceEE-EE--EEeeCCce---eeeecccceeeeeec-------------------cCCCCccCccccc-- Q lcl|Aclame:pro 222 TTIKPILSEDTGIVV-GY--VQEVDGAI---VAHFDKRDVVLFRQN-------------------LTPDVYMYGYSLP-- 274 (945) Q Consensus 222 s~Vtv~~d~dG~~~~-~Y--v~~~dG~~---~~~~~a~DVIh~r~n-------------------~~~d~~~~GyGlS-- 274 (945) .++..+.|+..+.+. .+ .....++. ...+.++.++.+... +.++. ...+|.| T Consensus 112 ~~~~~i~Dp~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~l-~~~~G~s~I 190 (410) T protein:vir:95 112 SNATGVIDPITGLLVEGYAVLARDDYNRPTLEAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDA-VRPFGRSRI 190 (410) T ss_pred cceEEEEeCCCCceEEEEEEEEecCCCeEEEEEEEeCCcEEEEeeCCccccccCCCCCcceEEecccccC-CccCCcccc Confidence 999988876544332 22 11111111 122223333222111 11111 1235655 Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccC Q lcl|Aclame:pro 275 --PIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG 352 (945) Q Consensus 275 --PI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~ 352 (945) |+..+.+.+.....-......||. .+-..++= ...++ +..+. |+... ++.+.++ T Consensus 191 ~~~v~~l~da~~r~~~~~~~~~e~~a---~pqr~i~G----~d~d~--------~~~~~----~~~~~-----~~i~~~~ 246 (410) T protein:vir:95 191 TRAGMYYQKYAKRTLERADITAEFYS---WPQKYILG----LDPDA--------EPMEK----WKATV-----SSLLTIS 246 (410) T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhc---chhheeec----cCCCC--------CcCch----hhhhh-----hhheecc Confidence 455555555555555555666653 23333331 11111 11112 22211 1222332 Q ss_pred -----CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHH---HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 353 -----GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEV---MASLTKAKGLEPLMATISKG 424 (945) Q Consensus 353 -----~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eq---q~~~F~~~tL~Pll~~IEqe 424 (945) .+.++.++....-+ .|++..+.....||..=++|++.+|.... |-+..++ +...+ ....+--.+.+.+. T Consensus 247 ~~~~~~~~~v~q~~~~~l~-~~~~~l~~l~~~~a~~s~lP~~~lg~~~~-NpsSa~Al~a~~~~L-~~ka~~k~~~fg~~ 323 (410) T protein:vir:95 247 SSDKGVKPSVGQFTTASMS-PFTEQLRTAAAGFAGEMGLTLDDLGFVSD-NPSSVEAIKASHENL-RLAGRKAQRSLGAG 323 (410) T ss_pred CCCCCCcceEEecCCCChH-HHHHHHHHHHHHHhhhcCCCHHHhccccC-chhHHHHHHHHHHHH-HHHHHHHHHHHHHH Confidence 23566655443332 58999999999999999999999986543 2222222 11111 11222223333333 Q ss_pred HHHh----hc--cc-----cccceeEEEeec---hhhcCHHHHHHHHHHHHhC--CCcCHHHHHHHHhCCCCCCcccccc Q lcl|Aclame:pro 425 FDEV----VS--EF-----RNEKDIKLWFKE---DDLEKERDWWNIIQGQLNT--GFRSINEARMEKGLEPVPWGDVPFS 488 (945) Q Consensus 425 Ln~k----L~--~~-----~~~~g~~f~fd~---~~l~D~kerae~~~~~v~~--GimT~NEaRe~lGlpPveGGD~~l~ 488 (945) +.+. +. .. ......++.|.. ....+..++++++.++.++ |+....-+++++|+.+-+ ... T Consensus 324 l~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~d~~~~s~a~~aDa~~Kl~~a~~g~~~~~~~~~~lg~~~~~---~~~- 399 (410) T protein:vir:95 324 LLNVAYVAACLRDEFRYTRSQFVRTAVKWEPLFEADANTMTMIGDGVVKLNQALPGYINAETIRDLTGIAGDM---SAK- 399 (410) T ss_pred HHHHHHHHHHHhcCCCCcccccceeeEEeeecCCcchhhHHHHHHHHHHHHHhccCCccHHHHHHhcCCChHH---HHH- Confidence 3321 10 11 111234555652 3334567788888888887 787788899999986431 110 Q ss_pred ccccccccccchhhc Q lcl|Aclame:pro 489 GLRNWKPEDEQAKAQ 503 (945) Q Consensus 489 ~~n~~~ped~~a~~~ 503 (945) . ..++..+.++ T Consensus 400 ~----~~~e~~~~g~ 410 (410) T protein:vir:95 400 P----VVSEGGSNGE 410 (410) T ss_pred H----HHHHHHhCCC Confidence 0 0111111111 No 166 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=97.90 E-value=1.2e-05 Score=47.54 Aligned_cols=415 Identities=12% Similarity=0.053 Sum_probs=152.8 Q ss_pred cccccccCCCCCcccccCcccce-eccc------cCCccc---chhhhh---hHHhhhccHHHHHHHHHHHHhhccCceE Q lcl|Aclame:pro 78 VPYNHQEPPFKFNLFEYSPESLM-YLPS------ISDPDA---FFLINL---FRKYRFNNDSKLIKVSEIPKKLTSKELE 144 (945) Q Consensus 78 ~p~~~r~pp~~f~L~~~s~~sl~-~lps------~s~p~~---~~~~~v---~~~~Am~nsaV~aCV~iIA~~IAsLP~~ 144 (945) .+.+....+.. +...-...+. ..+. ...... .....+ .+...+.......+|+.+++.+---+|. T Consensus 1 ~~~~~~~d~~~--~i~~L~~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~a~~l~~~Gf~ 78 (488) T protein:vir:23 1 MAETESIDPEK--LRDQLLDAFENKQNELKSSKAYYDAERRPDAIGLAVPLDMRKYLAHVGYPRTYVDAIAERQELEGFR 78 (488) T ss_pred CCcccCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccchhhcCcccchhhhhhhhhcchHHHHHHHHHHhhhcccee Confidence 12111111110 0000000000 0000 000000 000000 0111112223334444444433222232 Q ss_pred EEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC--------CCeEEEE Q lcl|Aclame:pro 145 IYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE--------QGNLVAI 216 (945) Q Consensus 145 VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~--------~G~pveL 216 (945) +-...........+ ......+.+++.+ |.. ......+..+.+.+|.+|..+..+. .|.+ .+ T Consensus 79 ~~~~~~~~~~~~~d--~~~~~~l~~i~~~-N~~-------~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~~-~i 147 (488) T protein:vir:23 79 IPSANGEEPESGGE--NDPASELWDWWQA-NNL-------DIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEVP-LI 147 (488) T ss_pred ccCCcccccccccc--hhHHHHHHHHHHh-cCh-------hHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCcc-eE Confidence 21100000000000 1111234444431 211 2234556778889999998876543 2222 47 Q ss_pred EEcCCceeEEEEcCC-CceEE--EEEEeeCCce---eeeecccceee-------------------------eeeccCCC Q lcl|Aclame:pro 217 TPVDGTTIKPILSED-TGIVV--GYVQEVDGAI---VAHFDKRDVVL-------------------------FRQNLTPD 265 (945) Q Consensus 217 ~pLdPs~Vtv~~d~d-G~~~~--~Yv~~~dG~~---~~~~~a~DVIh-------------------------~r~n~~~d 265 (945) .+++|..+.+..++. +...+ .|++..+++. ...+.++.+.+ ++.+.. T Consensus 148 ~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~-- 225 (488) T protein:vir:23 148 RVEPPTALYAEVDPRTRKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEMVPVIPISNRTR-- 225 (488) T ss_pred EEeccceeEEEEecCCCceEEEEEEEEecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCCcceEEeccccc-- Confidence 788999888877643 22222 1222222221 11222333222 221111 Q ss_pred CccCcccccHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 266 VYMYGYSLPPIE----ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMM 341 (945) Q Consensus 266 ~~~~GyGlSPI~----aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~s 341 (945) ....+|.|.|. .+.+.+.....-......+|. .|--++. +. ..+ ....+.. .-...|+.. T Consensus 226 -~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a----~p~~~i~--G~-~~~-----~~~~~~~-~~~~~~~~~-- 289 (488) T protein:vir:23 226 -LSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMA----IPQRLIF--GA-KPE-----ELGINAE-TGQRMFDAY-- 289 (488) T ss_pred -cCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHh--CC-Ccc-----ccccccc-ccchhhhhh-- Confidence 11235666543 223333332222222333332 1221221 00 000 0000000 001112211 Q ss_pred CcccCcccccCCC--ceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHH----------- Q lcl|Aclame:pro 342 GDYTQVPILSGGK--FTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASL----------- 408 (945) Q Consensus 342 G~Nagkp~VL~~G--~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~----------- 408 (945) .+....+++| .++.++...+. -.+++..+-.+.+|+..=++|++.+|.... +.++.++.... T Consensus 290 ---~~~v~~~~~g~~~~~~q~~~~~~-~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~-n~~Sg~Al~~~~~~l~~k~~~~ 364 (488) T protein:vir:23 290 ---MARILAFEGGEGAHAEQFSAAEL-RNFVDALDALDRKAASYSGLPPQYLSSSSD-NPASAEAIKAAESRLVKKVERK 364 (488) T ss_pred ---hhhhccCCCCCCceeEecCCCCh-HHHHHHHHHHHHHHhcccCCCHHHhccccC-cchHHHHHHHHHHHHHHHHHHH Confidence 1233444444 56666554332 247788888899999999999999975443 22222222111 Q ss_pred --HHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCC--CcCHHHHHHHHhCCCCCCcc Q lcl|Aclame:pro 409 --TKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTG--FRSINEARMEKGLEPVPWGD 484 (945) Q Consensus 409 --F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~G--imT~NEaRe~lGlpPveGGD 484 (945) .+...|.-.++.+....+..-. ......+++.|......+..+.++++.+++++| +++..-+++++|+-+-+-.. T Consensus 365 ~~~f~~~l~~~~~l~~~~~~~~~~-~~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l~~~~d~~~~ 443 (488) T protein:vir:23 365 NKIFGGAWEQAMRLAYKMVKGGDI-PTEYYRMETVWRDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDMGYTIVEREQ 443 (488) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc-chhhccceEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhCCCCchHHHH Confidence 1122222222222111110000 011234677887777778888999999988865 78888888988874321100 Q ss_pred ccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccc Q lcl|Aclame:pro 485 VPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPS 534 (945) Q Consensus 485 ~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~s 534 (945) +-.... ....+.....++......+.+... ..+.++.++.++..+ T Consensus 444 --~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~a 488 (488) T protein:vir:23 444 --MRQWLE--QDQKQGLGLIGSLYGASTPEGKPG-EAPVGEPPAPEPDAA 488 (488) T ss_pred --HHHHHH--HHHHHHHHHHHHHhccCCCcccCC-CCCCCCCCCCCCCCC Confidence 000000 000000011111100000111111 111122222222222 No 167 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=97.89 E-value=1.3e-05 Score=47.46 Aligned_cols=355 Identities=12% Similarity=0.080 Sum_probs=150.1 Q ss_pred cccCcccceeccccCCcccchhhhhhHHhhh-ccH------HHHHHHHHHHHhhccCceEEEEe-----ccCcccccccc Q lcl|Aclame:pro 92 FEYSPESLMYLPSISDPDAFFLINLFRKYRF-NND------SKLIKVSEIPKKLTSKELEIYKH-----IEDKHVNYYLK 159 (945) Q Consensus 92 ~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am-~ns------aV~aCV~iIA~~IAsLP~~VyRr-----tedg~ee~~~r 159 (945) ++...-... +..|..- ........+++. .++ .+-.....+.+.+...|-.+... .-+|- T Consensus 1 m~~~~i~~L-~~~~~~~--~~r~~~~~~yy~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~Gf------ 71 (422) T protein:vir:97 1 MNYMGMGYL-RRKLALF--KTGVDKRYRYYAMDDRDDTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFREF------ 71 (422) T ss_pred CChHHHHHH-HHHHHHH--HHHHHHHHHHHhcCCChhhcCccccHHHHHHHHhhcchhHHHHHHHHhcccccee------ Confidence 222111000 0001100 000001111111 111 11111222222222222111100 00110 Q ss_pred hhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC-CCeEEEEEEcCCceeEEEEcCCCceE-EE Q lcl|Aclame:pro 160 RIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE-QGNLVAITPVDGTTIKPILSEDTGIV-VG 237 (945) Q Consensus 160 ~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~-~G~pveL~pLdPs~Vtv~~d~dG~~~-~~ 237 (945) ...+..+.+++++ |... .....+..+.+.+|.+|+.+..+. .|.| .+.+++|.++....|+..+.. .. T Consensus 72 -~~~d~~l~~~w~~-N~ld-------~~~~~~~~~al~~G~sf~~v~~~~~~~~p-~i~~~sp~~~~~i~D~~~~~~~~a 141 (422) T protein:vir:97 72 -TNDDFNAWEIFKA-NNPD-------IFFDTAIQSALIASCCFVYIMPGAEDGLP-KMQVIEASKATGILDPTTFLLTEG 141 (422) T ss_pred -eCCchhHHHHHHh-cChH-------HHHHHHHHHHHHhcceeEEEeeCCCCCee-EEEEechhhEEEEEeCCCCcceee Confidence 0111224444432 3221 123345677889999999998875 5665 688999999988877654332 11 Q ss_pred EE---EeeCCcee-eeecccc----------------------eeeeeeccCCCCccCcccccHH----HHHHHHHHHHH Q lcl|Aclame:pro 238 YV---QEVDGAIV-AHFDKRD----------------------VVLFRQNLTPDVYMYGYSLPPI----EILYKVILSDI 287 (945) Q Consensus 238 Yv---~~~dG~~~-~~~~a~D----------------------VIh~r~n~~~d~~~~GyGlSPI----~aa~~~I~~~~ 287 (945) +. ...+|... ..+..++ ++++..++.. ...+|.|.| ..+.+.+.... T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~---~~~~G~s~I~e~v~~l~da~~r~~ 218 (422) T protein:vir:97 142 YAILESDSNGNPTLEAYFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRPDA---VRPFGRSRITKAGMYHQKAAKRTL 218 (422) T ss_pred EEEEEecCCCcEEEEEEEcCceEEEEcCCCccccccCCCCCcceEEecccCCC---ccccCccccchhHHHHHHHHHHHH Confidence 11 11122211 1111111 2333322211 234676644 44445554444 Q ss_pred HHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccC-----CCceeeeccC Q lcl|Aclame:pro 288 FIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG-----GKFTWIDFKG 362 (945) Q Consensus 288 aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~-----~G~k~~pLs~ 362 (945) .-......||. .+-..++ |...++ ...+.++.... ..+.++ ++.++.++.. T Consensus 219 ~~~~~~~e~~a---~pqr~i~----G~d~d~--------~~~~~~~~~~~---------~i~~~~~de~~~~~~v~q~~~ 274 (422) T protein:vir:97 219 ERAEVTAEFYS---FPQKYVL----GMDPDA--------KPMEKWRATVS---------TLLEISKDEDGDKPTVGQFTT 274 (422) T ss_pred HHHHHHHHHhc---chhhhhc----ccCccc--------ccCchhhhhhh---------hhhccCCCCCCCcceeeecCC Confidence 44444555553 2333332 111111 11112222221 222222 2356665554 Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHH--HHHHHHHHHHHHHHHHHHHHHhh---c---cc-- Q lcl|Aclame:pro 363 KRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMA--SLTKAKGLEPLMATISKGFDEVV---S---EF-- 432 (945) Q Consensus 363 sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~--~~F~~~tL~Pll~~IEqeLn~kL---~---~~-- 432 (945) ..-+ .|++..+..+..++..=++|++.+|.... |-+..++.. ..-+....+--.+.+.+.+.+.+ . .. T Consensus 275 ~~l~-~~~~~l~~~~~~~a~~s~lP~~~lg~~~~-NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~ 352 (422) T protein:vir:97 275 ASMA-PFMEHLKMYASLFAGGSGLTLDDLGFPSD-NPSSVESIKAAHENLRAAGRKAQRSFSSGFLNVAYIAVCLRDEFP 352 (422) T ss_pred CChh-HHHHHHHHHHHHHhcccCCCHHHhccccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc Confidence 3333 58999999999999999999999997554 222222211 11111122222333333333211 1 10 Q ss_pred ---cccceeEEEeechhhcC---HHHHHHHHHHHHhC--CCcCHHHHHHHHhCCCCCCccccccccccccccccchhhcc Q lcl|Aclame:pro 433 ---RNEKDIKLWFKEDDLEK---ERDWWNIIQGQLNT--GFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQ 504 (945) Q Consensus 433 ---~~~~g~~f~fd~~~l~D---~kerae~~~~~v~~--GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~ 504 (945) ....++.+.|......+ ..+.++++.+++++ |++..+-+++++|+.+.+ .-.... +. .++ T Consensus 353 ~~~~~~~~~~~~w~p~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~~~~~---~~~~~~-----~~----~~~ 420 (422) T protein:vir:97 353 YLRNQFMDTVIKWEPLFEADANMLTLVGDGAIKLNQAIPGFMDADVIRDLTGVKGAD---KPIPAI-----TE----VTT 420 (422) T ss_pred ccchhhccceEEEccCCCCChHHHHHHHHHHHHHHhhccccccHHHHHHHcCCCchh---HHHHHH-----Hh----hhc Confidence 11223567776443334 45567777788777 788889999999985431 111000 00 011 Q ss_pred CC Q lcl|Aclame:pro 505 GA 506 (945) Q Consensus 505 ~a 506 (945) ++ T Consensus 421 d~ 422 (422) T protein:vir:97 421 DG 422 (422) T ss_pred cC Confidence 11 No 168 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=97.82 E-value=1.7e-05 Score=46.74 Aligned_cols=442 Identities=11% Similarity=0.038 Sum_probs=177.9 Q ss_pred CchhhhHhhhheeccccccCccccccc-----------hhchhhhhc------ccCCCCcchhhhhhhhhccceeeeeee Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNI-----------KANVDSLSR------GKDYPGFKPLLTYRALAWNSTVVYSII 63 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (945) |+.....=.++-+-.|+.+|=.--.|+ ..+.+-+.. .+.-|-++-+..|- . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~YY----------~-- 68 (512) T protein:vir:97 1 MLKANEFETDTDLRENRNYLFNDEANVVYTYDGTESDLLQNINEVSKYIEHHMDYQRPRLKVLSDYY----------E-- 68 (512) T ss_pred CccceeccCceeeeeCceeeeccccccccccCchhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHh----------c-- Confidence 555443322333334444442111121 111111110 01111111111110 0 Q ss_pred eeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 64 IFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKEL 143 (945) Q Consensus 64 ~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~ 143 (945) -++.++++++... .. +. ++.- +..+-....|+..+.-+-+-|+ T Consensus 69 --g~~~i~~~~~~~~-~~------------~~------------~~~k----------i~~n~~k~Ivd~~~~yl~g~p~ 111 (512) T protein:vir:97 69 --GKTKNLVELTRRK-EE------------YM------------ADNR----------VAHDYASYISDFINGYFLGNPI 111 (512) T ss_pred --ccCccccccCccc-cc------------cc------------Ccce----------eecchHHHHHHHHhhhhcccCc Confidence 0233333222100 00 00 0000 0011233345555555556666 Q ss_pred EEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCce Q lcl|Aclame:pro 144 EIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTT 223 (945) Q Consensus 144 ~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~ 223 (945) .+- ..+. .....+..++.. |... .....+..+.+.+|.+|..+.++.+|++ .+..++|.. T Consensus 112 ~~~--~~d~---------~~~~~l~~~~~~-n~~~-------~~~~~~~~~~~i~G~ay~~vy~ded~~~-~i~~~~p~~ 171 (512) T protein:vir:97 112 QCQ--DDDK---------DVLEAIEAFNDL-NDVE-------SHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMS 171 (512) T ss_pred eec--cCCh---------HHHHHHHHHHhh-cCHH-------HHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccc Confidence 542 1110 112234455433 3221 2344567788899999999999988876 688899999 Q ss_pred eEEEEcCCC--ceEE--EEEEe--eCCc------eeeeecccceeeeeeccCC--------------------CC--ccC Q lcl|Aclame:pro 224 IKPILSEDT--GIVV--GYVQE--VDGA------IVAHFDKRDVVLFRQNLTP--------------------DV--YMY 269 (945) Q Consensus 224 Vtv~~d~dG--~~~~--~Yv~~--~dG~------~~~~~~a~DVIh~r~n~~~--------------------d~--~~~ 269 (945) +.++.++.. .... +|+.. .++. ....+..+.+.++...... -. ... T Consensus 172 ~~~iyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn 251 (512) T protein:vir:97 172 TFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNN 251 (512) T ss_pred eEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceEeecCC Confidence 988877543 2211 22211 1111 0123334434333211100 00 001 Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcC---cccC Q lcl|Aclame:pro 270 GYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG---DYTQ 346 (945) Q Consensus 270 GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG---~Nag 346 (945) ..|.|-+..+...++....+..-.++.+.. .+.|-.++.-. . ..+.++....+....-.... .+.. T Consensus 252 ~~~~gd~e~v~~liDa~d~~~S~~~~~~~~-~~~~~lv~~G~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (512) T protein:vir:97 252 ERRKGDYEKVITLIDLYDNAESDTANYMSD-LNDAMLLIKGN--L--------NLDPVEVRKQKEANVLFLEPTVYENRD 320 (512) T ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHH-hcCceeeeecC--c--------cCCchhhhhhhhcccccccccchhhcc Confidence 235555665555555544433333333322 23344444211 1 11222222222111111110 0111 Q ss_pred cccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHH Q lcl|Aclame:pro 347 VPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKG 413 (945) Q Consensus 347 kp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~t 413 (945) ...-.++|.++..++.......+....+...+.|+..-++|..-.+... ++-|. ++. ....+..+ T Consensus 321 ~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~-gn~Sg-~Al~~~~~~l~~ka~~k~~~f~~~ 398 (512) T protein:vir:97 321 TGIETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQSG-EAMKYKLFGLEQRTKTKEGLFTKG 398 (512) T ss_pred cccCCCCCcceEEEeecCCHHHHHHHHHHHHHHHHHHhCCcccCccccc-ccchH-HHHHHHHHHHHHHHHHHHHHHHHH Confidence 1122345666666665555666678888899999999999976544322 22221 221 11222333 Q ss_pred HHHHHHHHHHHHHHhhc--cccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccc Q lcl|Aclame:pro 414 LEPLMATISKGFDEVVS--EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLR 491 (945) Q Consensus 414 L~Pll~~IEqeLn~kL~--~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n 491 (945) |+-.++.+...+...-. .......+.+.|+.....+..+.++++.++ .|+++...+.+++++ +++.+.-+- T Consensus 399 l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~~~~e~~~~~~kl--~giiS~et~~~~l~~--v~d~~~E~e--- 471 (512) T protein:vir:97 399 LRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSF--FQDPELEVK--- 471 (512) T ss_pred HHHHHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCchHHHHHhCCC--CCCHHHHHH--- Confidence 33333333332221110 111223567888888888888899988877 488998777777643 222111110 Q ss_pred cccccccchhhccCCCCcccccccCCCCCCCCCCCCC-CccccchhH Q lcl|Aclame:pro 492 NWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDE-NSSVPSEQK 537 (945) Q Consensus 492 ~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd-~e~~~se~k 537 (945) .+............. ..+.+..+...++.++ .+..+.+++ T Consensus 472 --ri~~E~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (512) T protein:vir:97 472 --KIEEDEKESIKKAQK----GIYKDPRDINDDEQDDDTKDTVDKKE 512 (512) T ss_pred --HHHHHHHHHHHHHhh----cccCCCCCCCCCCCCCCccccccccC Confidence 011111100000000 0111111111111111 111111111 No 169 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=97.80 E-value=1.8e-05 Score=46.54 Aligned_cols=418 Identities=11% Similarity=0.012 Sum_probs=167.5 Q ss_pred eeeeeeee------eecceeeeccccccccccc-------------cCCC--CCcccccCcccceeccccCCcccchhhh Q lcl|Aclame:pro 57 TVVYSIII------FRKNQVLKKEKIIVPYNHQ-------------EPPF--KFNLFEYSPESLMYLPSISDPDAFFLIN 115 (945) Q Consensus 57 ~~~~~~~~------~k~n~l~kK~K~i~p~~~r-------------~pp~--~f~L~~~s~~sl~~lps~s~p~~~~~~~ 115 (945) ..||.+.- ...|+.|.-++........ .+-. -...+.+....+. .......... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~yY~g~~~~i~-----~~~~~~~~~~ 75 (481) T protein:vir:10 1 MTVYTINNINTKFSPLANDDFVVSDLAELLKEENLRNFISRHQTEQVPRLEMLESYYLNRNTDIL-----AGERRLQKYG 75 (481) T ss_pred CeeEeeehhchhcccccCceeeeecchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-----cCcccccccc Confidence 34454332 2344444333321111000 0000 0000001000000 0000000000 Q ss_pred hhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHH Q lcl|Aclame:pro 116 LFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDI 195 (945) Q Consensus 116 v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dl 195 (945) -.....+..+.....|+..+.-+.+-|+.+-- .+ ......+..++.+ |.. ......+..+. T Consensus 76 ~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~--~d---------~~~~~~l~~~~~~-n~~-------~~~~~~~~~~~ 136 (481) T protein:vir:10 76 DKADHRAVHNYAKYVSRFIVGYLTGNPITITH--QD---------NQTNDKIIELNDL-NDA-------DEVNSDLALNL 136 (481) T ss_pred ccccceeecchHHHHHHHHHhhhccCCceEec--CC---------hhHHHHHHHHHHh-cCh-------hHHHHHHHHHH Confidence 00011123345556677777666666665321 11 1122345666654 322 12345567788 Q ss_pred hccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCc--eEE--EEEEeeCC-c----eeeeecccceeeeeecc---- Q lcl|Aclame:pro 196 LTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTG--IVV--GYVQEVDG-A----IVAHFDKRDVVLFRQNL---- 262 (945) Q Consensus 196 Ll~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~--~~~--~Yv~~~dG-~----~~~~~~a~DVIh~r~n~---- 262 (945) +.+|.+|+.+..+.+|++ .+..++|..+.++.++.+. ... +|+...++ + ....+..+.+.++.... T Consensus 137 ~~~G~~~~~~~~d~dg~~-~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~ 215 (481) T protein:vir:10 137 SIYGRAYEIVYRDFEDRD-TFKVLDPKSTFVVYDQTLDKKVVAGVRYFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTYH 215 (481) T ss_pred HhcCeEEEEEEeCCCCeE-EEEEEcccceEEEEcCCCCCceEEEEEEEEEeeCCCceEEEEEEEecCeEEEEEecCCcee Confidence 899999999888898987 5888999999888765432 211 11111111 1 11123333333332110 Q ss_pred ------CCCCc-------cCcccccHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccH Q lcl|Aclame:pro 263 ------TPDVY-------MYGYSLPPIEILYKVIL---SDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSR 326 (945) Q Consensus 263 ------~~d~~-------~~GyGlSPI~aa~~~I~---~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~ 326 (945) ++.+. ....|.|-+..+...++ ...........+| ..|..++. +... .+. T Consensus 216 ~~~~~~~~~g~vPvv~~~n~~~g~~~~~~v~~lida~~~~~s~~~~~~~~~----~~~~~~~~--g~~~--------~~~ 281 (481) T protein:vir:10 216 RVEEVEHYYNDVPIIEYLNDQFKQGDFENVIALIDLYDSAQSDTANYMTDL----NDAMLAII--GNVD--------LDS 281 (481) T ss_pred ecccccccCCceeEEEeecCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh----cCceeEee--cCcC--------CCc Confidence 00000 01235554444444443 3222222233333 23444432 1111 122 Q ss_pred HHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHH Q lcl|Aclame:pro 327 EQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMA 406 (945) Q Consensus 327 Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~ 406 (945) +..+.++..- ....... ......+++.++..++.......+.+..+...+.|+..-++|....+... ++-|. ++.. T Consensus 282 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~-~n~Sg-~Al~ 357 (481) T protein:vir:10 282 EDAKAFRDAN-MIHLEPG-TNANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYTNTPDLNDEQFS-GVQSG-ESMK 357 (481) T ss_pred cchhhhhhcc-ceecccc-ccccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc-cccHH-HHHH Confidence 2222222110 0000000 00011123334443444444566778888999999999999987665332 22222 2211 Q ss_pred HHH--HHHHHHHHHHHHHHHHHH-------hh----ccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHH Q lcl|Aclame:pro 407 SLT--KAKGLEPLMATISKGFDE-------VV----SEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARM 473 (945) Q Consensus 407 ~~F--~~~tL~Pll~~IEqeLn~-------kL----~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe 473 (945) ..+ ......-..+.+...+.+ .+ ........+.+.|......+..+.++++.++ .|+++...+.+ T Consensus 358 ~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~~~~~~~~a~~~~kl--~g~is~et~~~ 435 (481) T protein:vir:10 358 YKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGLKQHNYAELTITFTPNLPKSMMESINAFNAL--SGGVSESTRLS 435 (481) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccceeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHH Confidence 111 111111111222222221 11 1112223567888888888899999998877 47888877777 Q ss_pred HHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCcc Q lcl|Aclame:pro 474 EKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSS 531 (945) Q Consensus 474 ~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~ 531 (945) ++++ +++.+.-+ ...................+ ...++++..|+++. T Consensus 436 ~l~~--i~d~~~E~-----~ri~~E~~~~~~~~~~~~~~-----~~~~~~~~~dd~~g 481 (481) T protein:vir:10 436 LLDF--IDNPKEEL-----EKMQEEEAQREKQADKRGYG-----EAFENHLNVDDSNG 481 (481) T ss_pred hCCC--CCCHHHHH-----HHHHHHHHHHHhhhhhccCC-----ccCCCCCCCCCCCC Confidence 6644 22211110 00111111111111111111 11112222222222 No 170 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=97.77 E-value=2.1e-05 Score=46.28 Aligned_cols=400 Identities=10% Similarity=-0.010 Sum_probs=161.7 Q ss_pred eeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceec---cccCCcccchhhhhhHHhhhccHHHHHHHHHH Q lcl|Aclame:pro 58 VVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYL---PSISDPDAFFLINLFRKYRFNNDSKLIKVSEI 134 (945) Q Consensus 58 ~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~l---ps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iI 134 (945) .|.. |+..+ .++.....+. +.+....+... +....++. .+.++-....|+.. T Consensus 1 ~~~~---~~~~~----~~r~~~l~~y--------y~g~~~~~~~~~~~~~~~~~~~----------ki~~n~~~~ivd~~ 55 (440) T protein:vir:95 1 MLAA---FLGSQ----KQRLAILASY--------AQGDNFSILSGHRRLDDEKADY----------RVRHKWGGYISSFA 55 (440) T ss_pred Chhh---HHHHH----HHHHHHHHHH--------hccCCcccccccccccccCCcc----------eeecchHHHHHHhh Confidence 0000 00100 0000000000 00000000000 00000110 01123334455555 Q ss_pred HHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEE Q lcl|Aclame:pro 135 PKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLV 214 (945) Q Consensus 135 A~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pv 214 (945) +.-+-+-|.++- ....+. ......+.+++.+ |.. ......+..+.+.+|.+|..+..+.+|++ T Consensus 56 ~~~l~g~~~~~~-~~~~~~-------~~~~~~l~~~~~~-n~~-------~~~~~~~~~~~~~~G~a~~~~~~d~~~~~- 118 (440) T protein:vir:95 56 TGYVIGNPVSIG-VMEGGS-------ADQLSTIKDIEWQ-NDI-------NALNSDLAFDASVYGRAYEYHFRDKDKVD- 118 (440) T ss_pred hhheeccCceEe-eCCCcc-------HHHHHHHHHHHHh-cCH-------hHHHHHHHHHHhhcCeEEEEEEecCCCce- Confidence 555555565542 111111 0111234444432 211 12344567788899999999988998887 Q ss_pred EEEEcCCceeEEEEcCCCc--eEE--EEEEeeCCceeeeecccceeeeeecc-------------CCCC-------ccCc Q lcl|Aclame:pro 215 AITPVDGTTIKPILSEDTG--IVV--GYVQEVDGAIVAHFDKRDVVLFRQNL-------------TPDV-------YMYG 270 (945) Q Consensus 215 eL~pLdPs~Vtv~~d~dG~--~~~--~Yv~~~dG~~~~~~~a~DVIh~r~n~-------------~~d~-------~~~G 270 (945) .+..++|..+.++.++.+. ... +|....+......+..+.+.++.... ++.+ ...- T Consensus 119 ~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~ 198 (440) T protein:vir:95 119 RVVLISPLEMFVIRDLTVEQNIIAAVHLPIYADKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWNNR 198 (440) T ss_pred EEEEEcccceEEEEcCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeCCC Confidence 4778899999998876542 221 12111222122233333333322110 0000 0011 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccc Q lcl|Aclame:pro 271 YSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPIL 350 (945) Q Consensus 271 yGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~V 350 (945) .|.|-++.+...++....+.....+.... .+.|-.++.-.. .+...++++...+++.-.-........ .. T Consensus 199 ~g~sd~e~v~~lida~~~~~s~~~~~~~~-~~~~~~v~~g~~-------~~~~~~~e~~~~~~~~~~~~~~~~~~~--~~ 268 (440) T protein:vir:95 199 FRMGDYESEISLIDAYDAGQSDTANYMSD-LNDAMLLVKGDL-------DGIKLSPEDAAKMKDANMLFLKTGIST--TG 268 (440) T ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHH-hhcceeeeeccc-------ccCCCCccchhhhhhccceeccccccc--cc Confidence 34555554444444333332222222222 223444433110 012234444444433211111100011 11 Q ss_pred cCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHH Q lcl|Aclame:pro 351 SGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPL 417 (945) Q Consensus 351 L~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pl 417 (945) .+++.+...++.......+....+...+.|+..-++|..-.+... ++-|. ++. ....+...++.. T Consensus 269 ~~~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~-~n~Sg-~Al~~~~~~l~~k~~~k~~~~~~~l~~~ 346 (440) T protein:vir:95 269 QQTTADASYIYKQYDVNGTEAYKNRLANDIHRFSRIPNLDDDRFN-STSSG-IALLYKMIGLEQVRKDKETYFTKALRRR 346 (440) T ss_pred CCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 123333333333344455677888899999999999975543322 22221 111 123334444444 Q ss_pred HHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccc Q lcl|Aclame:pro 418 MATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPED 497 (945) Q Consensus 418 l~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped 497 (945) ++.+...++..-........+++.|......+..+.++++.++ .|+++...+.++++. ++..++. . T Consensus 347 ~~li~~~~~~~~~~~~~~~~v~i~f~~~~p~~~~~~ad~~~kl--~g~iS~et~~~~l~~--~d~~~E~---------~- 412 (440) T protein:vir:95 347 YELISNIHKAINGPVIEANKLTFTFHPNIPQDVWTEIKAYIEA--GGEISQETLMENASF--TDYKTEH---------S- 412 (440) T ss_pred HHHHHHHHhhcCCcccccccceEEeCCCCCCCHHHHHHHHHHH--hccCcHHHHHHhCCC--CCcHHHH---------H- Confidence 4444433332211222334578889888888999999998887 578887666666533 1110000 0 Q ss_pred cchhhccCCCCcccccccCCCCCCCCCCCCCC Q lcl|Aclame:pro 498 EQAKAQQGAMPPQLAQAMADQPSQQGGGVDEN 529 (945) Q Consensus 498 ~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~ 529 (945) .-..+......+..+. .+..++++.++. T Consensus 413 -ri~~E~~~~~~~~~~~---~~~~~~~~~~~e 440 (440) T protein:vir:95 413 -RILKQGGSSDLEIGQI---VGDADVGQADTE 440 (440) T ss_pred -HHHHHHHHhhhhHHhh---ccCCCCCCcCCC Confidence 0001111111111111 111111111111 No 171 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=97.77 E-value=2.1e-05 Score=46.25 Aligned_cols=440 Identities=12% Similarity=0.026 Sum_probs=177.4 Q ss_pred CchhhhHhhhheeccccccCccccccch---hchhhhhc------ccCCCCcchhhhhhhhhccceeeeeeeeeecceee Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIK---ANVDSLSR------GKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVL 71 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~ 71 (945) ..+.-|+=.-|=+.||. ++-|++-.. -+.+-+.+ .+.-|-++-+.-|-. . ++.++ T Consensus 11 ~~~~~~~~~~~~~~~n~--~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~-g-------------~~~i~ 74 (511) T protein:vir:96 11 TDLRGNINYLFNDEANV--VYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYE-G-------------KTKNL 74 (511) T ss_pred hhhhhhhhhhhhhhhCC--ccccchhhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhc-c-------------cCccc Confidence 33444544444444443 232332111 12111110 111111111111100 0 12222 Q ss_pred eccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 72 KKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIED 151 (945) Q Consensus 72 kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrted 151 (945) ++++.. +.. +. ++.- +..+.....|+..+.-+-+-|+.+- ..+ T Consensus 75 ~~~~~~-~~~------------~~------------~~~k----------i~~n~~k~Iv~~~~~yl~g~p~~~~--~~~ 117 (511) T protein:vir:96 75 VELTRR-KEE------------YM------------ADNR----------VAHDYASYISDFINGYFLGNPIQYQ--DDD 117 (511) T ss_pred cccCcC-ccc------------cc------------Ccce----------eecchHHHHHHHHHhhhccCCceee--cCc Confidence 222110 000 00 0000 0011222344555555556666642 111 Q ss_pred cccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC Q lcl|Aclame:pro 152 KHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED 231 (945) Q Consensus 152 g~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d 231 (945) . .....+.+++.. |... .....+..+.+.+|.+|..+.++.+|++ .+.+++|..+.++.++. T Consensus 118 ~---------~~~~~l~~~~~~-n~~~-------~~~~~~~~~~~i~G~a~~~vy~ded~~~-~i~~~~p~~~~~vydd~ 179 (511) T protein:vir:96 118 K---------DVLEAIEAFNDL-NDVE-------SHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNT 179 (511) T ss_pred h---------HHHHHHHHHHhh-cCHH-------HHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCC Confidence 0 112334555543 3211 2344567788899999999888888875 68889999999887654 Q ss_pred C--ceEE--EEEEee--CCc------eeeeecccceeeeeeccCC--------------------CC--ccCcccccHHH Q lcl|Aclame:pro 232 T--GIVV--GYVQEV--DGA------IVAHFDKRDVVLFRQNLTP--------------------DV--YMYGYSLPPIE 277 (945) Q Consensus 232 G--~~~~--~Yv~~~--dG~------~~~~~~a~DVIh~r~n~~~--------------------d~--~~~GyGlSPI~ 277 (945) . .... +|+... ++. ....+.+..+.++...... -. .....|.|-++ T Consensus 180 ~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~e 259 (511) T protein:vir:96 180 IERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYE 259 (511) T ss_pred CCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeEEecCCCCCCCchh Confidence 3 2211 222111 111 0112333333333211100 00 00123555566 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHh-cC-cccCcccccCCCc Q lcl|Aclame:pro 278 ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIM-MG-DYTQVPILSGGKF 355 (945) Q Consensus 278 aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~-sG-~Nagkp~VL~~G~ 355 (945) .+...++....+.....+.+.. ...|-.++.- .. ..+.++....++.---.. .. ...+...-.+++. T Consensus 260 ~v~~liDa~d~~~S~~~~~~~~-~~~~~lv~~g--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (511) T protein:vir:96 260 KVITLIDLYDNAESDTANYMSD-LNDAMLLIKG--NL--------NLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSV 328 (511) T ss_pred hhHHHHHHHHHHHHHHHHHHHH-hhCceeeeec--Cc--------cCCchhhcccccccceecccccccccccccCCCCc Confidence 5555555444333333333332 2334444321 11 011111111111000000 00 0001111234455 Q ss_pred eeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 356 TWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLMATIS 422 (945) Q Consensus 356 k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~~IE 422 (945) ++..++.......+....+...+.|...-++|..-.+... ++-|. .+. ....+..+++-.++.+. T Consensus 329 ~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~-~n~Sg-~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~ 406 (511) T protein:vir:96 329 DGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQSG-EAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLE 406 (511) T ss_pred ceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 5555555555666778888999999999999976543222 22222 111 12233334444444444 Q ss_pred HHHHHhhcc--ccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccch Q lcl|Aclame:pro 423 KGFDEVVSE--FRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQA 500 (945) Q Consensus 423 qeLn~kL~~--~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a 500 (945) ..+...-.. ......+.+.|+.....+..+.++++.++ .|+++...+.+++++ +++.+.-+- .+..... T Consensus 407 ~~~~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~G~iS~et~l~~l~~--v~D~~~E~~-----ri~~E~~ 477 (511) T protein:vir:96 407 TILKNTWSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSF--FQDPELEVK-----KIEEDEK 477 (511) T ss_pred HHHHhhcCcccccccccceEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHH-----HHHHHHH Confidence 333322111 11223578889888888999999988877 588998888777654 222111110 0111000 Q ss_pred hhccCCCCcccccccCCCCCCCCCCCCCCcc-ccchhH Q lcl|Aclame:pro 501 KAQQGAMPPQLAQAMADQPSQQGGGVDENSS-VPSEQK 537 (945) Q Consensus 501 ~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~-~~se~k 537 (945) .. ..........+..+...++.++.+. .+.+++ T Consensus 478 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:96 478 ES----IKKAQKGIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred HH----HHHHhhccccCCCCCCCCCCCCcccccccccC Confidence 00 0000001111111111111111111 111111 No 172 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=97.68 E-value=3e-05 Score=45.41 Aligned_cols=425 Identities=12% Similarity=0.076 Sum_probs=170.9 Q ss_pred CchhhhHhhhheeccccccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecc-eeeeccccccc Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKN-QVLKKEKIIVP 79 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n-~l~kK~K~i~p 79 (945) ...|-+-||+++--..- +.+ +.......+.. ..+-.--|...|-. .| +.+ ..+++++. T Consensus 2 ~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~i~-~~~~~~~~i~~~~~--~Y-----~g~~~~~~~~~~--- 60 (499) T protein:vir:80 2 INQIIAGVKGVMRRMGL--LKS--------LKDVTDHKKVN-ANDEDYKYIDMWKR--LY-----QGNYAEWHNLNY--- 60 (499) T ss_pred hhHHHHHHHHHHHHhcc--ccc--------hhhhhcCCCCc-CCHHHHHHHHHHHH--Hh-----cCCcchhhcccc--- Confidence 22233334444311100 000 00011011110 00000011111110 00 000 00111100 Q ss_pred cccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccc Q lcl|Aclame:pro 80 YNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLK 159 (945) Q Consensus 80 ~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r 159 (945) +..+ .+. +++. +........++..|+-+.+=|..+-- ++ T Consensus 61 ---~~~~-----------------~~~-~~~~----------~s~n~~~~iv~~~a~~l~~ep~~i~~---~d------- 99 (499) T protein:vir:80 61 ---EHNG-----------------NPV-NRRQ----------LSMNLPKVTAKYMSKLLFNEKVKINI---DD------- 99 (499) T ss_pred ---ccCC-----------------Ccc-ccce----------eecchHHHHHHHHHHhhhCCcceEee---CC------- Confidence 0000 000 0000 00111223445555555554554320 11 Q ss_pred hhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceEE-EE Q lcl|Aclame:pro 160 RIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVV-GY 238 (945) Q Consensus 160 ~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~-~Y 238 (945) ......+.+++. -| .|+.. +..++...+..|.+++.+..|.+|++ .+..++|..+.++..+.|.... .| T Consensus 100 -~~~~e~l~~~~~-~n------~f~~~-~~~~~~~a~~~G~~~~~~~~D~~~~~-~i~~v~a~~~~Pi~~d~~~~~~~~f 169 (499) T protein:vir:80 100 -ETAEEFVLNVLK-TN------GFTKN-MERYIEYGEAMGGFVIKVYHDGNKNV-KVSFATADCMYPLSNDSENVDECLI 169 (499) T ss_pred -HHHHHHHHHHHh-hc------cHHHH-HHHHHHHHhhcCcEEEEEEECCCCcE-EEEEEcCCceEEEEecCCCeEEEEE Confidence 111222333443 12 24433 45566677788999999888888876 5788899988876555554310 00 Q ss_pred E--EeeC-------------Cce--ee-----------------eeccc---------------c---eeeeeec-cCCC Q lcl|Aclame:pro 239 V--QEVD-------------GAI--VA-----------------HFDKR---------------D---VVLFRQN-LTPD 265 (945) Q Consensus 239 v--~~~d-------------G~~--~~-----------------~~~a~---------------D---VIh~r~n-~~~d 265 (945) + +..+ +.. .. .++.. + .++++.+ .+.- T Consensus 170 ~~~~~~~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~~~~~~~~~~~~p~f~~~~~~~~N~~ 249 (499) T protein:vir:80 170 ANSFHKNNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSLKLLFNDIEPVVPLPSLTRPTFIYIKPNIANNK 249 (499) T ss_pred EEEEeecCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccchhhhccCcCCceeecCCCccceEeecCCccccc Confidence 0 0000 000 00 00000 0 1122111 0110 Q ss_pred CccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 266 VYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYT 345 (945) Q Consensus 266 ~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Na 345 (945) ....++|+|.+..+...+.....+.....+-|.. |.. .|+.............+.... .+... ...+. T Consensus 250 ~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~--~i~v~~~~l~~~~~~~g~~~~----~~~~~-~~~~~---- 317 (499) T protein:vir:80 250 NLTSPLGISVYANALDTLKTLDLMFDSYYQEFKL-GKK--KVLVPSSFVKTAVNLDGSTTQ----YFDST-DEAFF---- 317 (499) T ss_pred cCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHh-ccc--ceecchhhhhccCCCCCCccc----CCCcc-cceee---- Confidence 1123568999988888888766666555555643 322 222211111000000000000 00000 00000 Q ss_pred Ccccc-cCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHH--HHHHHHHHHHHHH Q lcl|Aclame:pro 346 QVPIL-SGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLT--KAKGLEPLMATIS 422 (945) Q Consensus 346 gkp~V-L~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F--~~~tL~Pll~~IE 422 (945) ...+. -+++-.++.++....+-++.+..+...++|....|++|..+|....+.. ++.+..... ...++.-..+.++ T Consensus 318 ~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~~-TAtei~s~~~~l~~~~~~~~~~~~ 396 (499) T protein:vir:80 318 LYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLK-TATEVVSEKSETYQTKNSHSQLIE 396 (499) T ss_pred EeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccch-hHHHHHHHHHHHHHHHHHHHHHHH Confidence 00011 1222345666666666678888899999999999999999997655432 222221111 1112222333333 Q ss_pred HHHHHhh------------cc--ccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHH-hCCCCCCccccc Q lcl|Aclame:pro 423 KGFDEVV------------SE--FRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEK-GLEPVPWGDVPF 487 (945) Q Consensus 423 qeLn~kL------------~~--~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~l-GlpPveGGD~~l 487 (945) .+|..++ .. ......+.+.|+.....|.++.++...+++.+|+|+.-.++... |.+ ..+... T Consensus 397 ~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~et~l~~~~~~~---d~ea~~ 473 (499) T protein:vir:80 397 QGIKEMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPLKIALQRAWNIT---EAEADE 473 (499) T ss_pred HHHHHHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhcCCCC---hHHHHH Confidence 3333211 11 11123577888888889999999999999999999988876543 221 111000 Q ss_pred cccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 488 SGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 488 ~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) . +. .....+....+ ..+..+. ..+.+ T Consensus 474 ----e--l~-~i~~E~~~~~~------~~d~~g~----~ge~e 499 (499) T protein:vir:80 474 ----W--AE-MLAKEKQAEIP------NNDMTGI----FGEEE 499 (499) T ss_pred ----H--HH-HHHHHhhcCCC------CCCcccc----CCCCC Confidence 0 00 00011110000 0010000 00000 No 173 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=97.68 E-value=3e-05 Score=45.40 Aligned_cols=397 Identities=9% Similarity=-0.026 Sum_probs=158.2 Q ss_pred eeeeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchh--------------hhhhH--------- Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFL--------------INLFR--------- 118 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~--------------~~v~~--------- 118 (945) ..+--+|| . .........+|.-........ ..-+. T Consensus 1 ~~~~~~~~--------------~--------~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy~g~~~i 58 (470) T protein:vir:99 1 MKDINYGR--------------D--------KVTGNSSFIFPKGEKLTSNELLGFIAYNETVLKPRYRENMKLYLGKHKI 58 (470) T ss_pred CccccCCc--------------c--------cccCCceEEeCCCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc Confidence 11111111 1 111111111111000000000 00000 Q ss_pred ----------HhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHH Q lcl|Aclame:pro 119 ----------KYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLL 188 (945) Q Consensus 119 ----------~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli 188 (945) ...+.++-...+|+..+.-+-+-|+.+.- ..+. .....+.+++.+ |.. .... T Consensus 59 ~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~-~~d~---------~~~~~l~~~~~~-n~~-------~~~~ 120 (470) T protein:vir:99 59 LTAPEKETGADNRIVVNSAKYVVDVYNGYFCGIEPKLAL-LNDS---------SKIDEIARWNRQ-ENF-------FDTI 120 (470) T ss_pred ccCcccccCCcceeecchHHHHHHHHhhhhccCCeeEee-CCch---------hHHHHHHHHHHh-cCH-------hHHH Confidence 00111223334444444444444544321 1100 001123333332 211 1234 Q ss_pred HHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCce-E---EEEEEeeCCce----eeeecccceeeeee Q lcl|Aclame:pro 189 GMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGI-V---VGYVQEVDGAI----VAHFDKRDVVLFRQ 260 (945) Q Consensus 189 ~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~-~---~~Yv~~~dG~~----~~~~~a~DVIh~r~ 260 (945) ..+..+.+.+|.+|..+..+.+|++ .+..++|..+.++.++.+.. . ++|+....+.. ...+..+.+.++.. T Consensus 121 ~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (470) T protein:vir:99 121 NEISKQCDIFGRSIASIYQGEDARP-HLMYSSPNHAFIIYDDTVQRQPLAFVHYQIDNSNNWTDAYGVIQYADKFYKFKG 199 (470) T ss_pred HHHHHHHHhcCeeEEEEEeCCCCeE-EEEEEccceeEEEEcCCCCcceEEEEEEEEEecCCeeEEEEEEEecCeEEEEEe Confidence 5677788899999999888888887 58889999998888765431 1 11221111111 11122222222111 Q ss_pred c------------cC-----C--CCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccc Q lcl|Aclame:pro 261 N------------LT-----P--DVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIY 321 (945) Q Consensus 261 n------------~~-----~--d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~ 321 (945) . .+ | .......|.|-++.+...++....+.....+.+.. .+.|-.++. +... T Consensus 200 ~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~-~~~~~~~i~--g~~~------ 270 (470) T protein:vir:99 200 YDIEEDTNAAGYAINPYGLVPAVEFFENEERQGIFDSIKTLINALDKVISQKANQVEY-FDNAYMYMI--GFKL------ 270 (470) T ss_pred cccccccccccccccCCCccceEeecCCCCCCcchHhHHHHHHHHHHHHHHHHHHHHH-hcCceeeee--cCCc------ Confidence 0 00 0 01112346666666555555544433333333332 234444442 1111 Q ss_pred hhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCccc Q lcl|Aclame:pro 322 PQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKAT 401 (945) Q Consensus 322 ~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN 401 (945) .++...+....+...... . -...-.+++.++..++.......+....+...+.|+..-++|+.-.+.. .++-|. T Consensus 271 ---~~~~~g~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~n~Sg 344 (470) T protein:vir:99 271 ---PEDDEGNPKFDFKNNRVL-Y-VSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMMAMVPNIQDKNF-AGNSSG 344 (470) T ss_pred ---ccccccchhhhhhhccee-e-ecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCCcccccccc-ccCchH Confidence 111100111111111000 0 0000112344445555555555666778889999999999997644322 122222 Q ss_pred HHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCH Q lcl|Aclame:pro 402 AEVMA-------------SLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSI 468 (945) Q Consensus 402 ~Eqq~-------------~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~ 468 (945) ++.. ...+..+|+-.++.+...+...-........+.+.|......+..+.++++.++. |+++. T Consensus 345 -~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~--giis~ 421 (470) T protein:vir:99 345 -VALQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNNKQDQELWSELDFKFTRNLPEDMASAIDNAKNAE--GIVSK 421 (470) T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCH Confidence 2211 1223333443333333333222222223345788888888889999999888874 78988 Q ss_pred HHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCC Q lcl|Aclame:pro 469 NEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDE 528 (945) Q Consensus 469 NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd 528 (945) ..+++.++. ++ .+.-+ -.+..... ...... .......+....++++.++ T Consensus 422 et~l~~l~~--vd-~~~E~-----eri~~E~~-~~~~~~--~~~~~~~d~~~~d~~~ee~ 470 (470) T protein:vir:99 422 KTQLGMIPD--IE-PDAEM-----KQIAKEKA-DAIKQT--QQLSMPIDILKRDNNAEEE 470 (470) T ss_pred HHHHHhCCC--CC-HHHHH-----HHHHHHHH-HHHHHH--HhhcCCCCcCCCCCCccCC Confidence 777776543 11 11100 00000000 000000 0000000111111111111 No 174 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=97.64 E-value=3.4e-05 Score=45.10 Aligned_cols=442 Identities=11% Similarity=0.029 Sum_probs=177.6 Q ss_pred CchhhhHhhhheeccccccCccccc---cchhchhhhhc------ccCCCCcchhhhhhhhhccceeeeeeeeeecceee Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSS---NIKANVDSLSR------GKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVL 71 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~ 71 (945) ..+.-|+=+-|=+.||. ++-|++ +..-+++.+++ .+.-|-++-+..|- . -++.++ T Consensus 11 ~~~~~~~~~~~~~~~n~--~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy----------~----g~~~i~ 74 (511) T protein:vir:10 11 TDLRGNINYLFNDEANV--VYTYDGTESDLLQNVNEVSKCIEHHMDYQRPRLKVLSDYY----------E----GKTKNL 74 (511) T ss_pred hhhhhhhhhhhhhhhcC--CccCchhhhhcccCHHHHHHHHHHHHHhhHHHHHHHHHHh----------c----ccCccc Confidence 23334443333333332 222221 11111121111 00111111111110 0 012222 Q ss_pred eccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 72 KKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIED 151 (945) Q Consensus 72 kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrted 151 (945) +++... ++ ... ++.- +..+-....|+..+.-+-+-|+.+- ..+ T Consensus 75 ~~~~~~-------~~------~~~------------~~~k----------i~~n~~k~Iv~~~~~yl~g~p~~~~--~~d 117 (511) T protein:vir:10 75 VELTRR-------KE------EYM------------ADNR----------VAHDYASYISDFINGYFLGNPIQYQ--DDD 117 (511) T ss_pred cccCcc-------cc------ccc------------Ccce----------eecchHHHHHHHHhhhhcccCceee--cCc Confidence 222110 00 000 0000 0012223344555555556666642 111 Q ss_pred cccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC Q lcl|Aclame:pro 152 KHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED 231 (945) Q Consensus 152 g~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d 231 (945) ......+.+++.+ |... .....+..+.+.+|.+|..+.++.+|++ .+.+++|..+.++.++. T Consensus 118 ---------~~~~~~l~~~~~~-n~~~-------~~~~~~~~~~~i~G~ay~~vy~dedg~~-~i~~~~p~~~~~vydd~ 179 (511) T protein:vir:10 118 ---------KDVLEAIEAFNDL-NDVE-------SHNRSLGLDLSIYGKAYEIMIRNQDDET-RLYKSDAMSTFVIYDNT 179 (511) T ss_pred ---------hHHHHHHHHHHhh-cCHH-------HHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCC Confidence 1112345555543 3221 2344567788899999999888888875 68889999998887754 Q ss_pred C--ceEE--EEEEe--eCCc------eeeeecccceeeeeeccCC--------------------CC--ccCcccccHHH Q lcl|Aclame:pro 232 T--GIVV--GYVQE--VDGA------IVAHFDKRDVVLFRQNLTP--------------------DV--YMYGYSLPPIE 277 (945) Q Consensus 232 G--~~~~--~Yv~~--~dG~------~~~~~~a~DVIh~r~n~~~--------------------d~--~~~GyGlSPI~ 277 (945) . .... +|+.. .++. ....+.++.+.++...... -. .....|.|-++ T Consensus 180 ~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e 259 (511) T protein:vir:10 180 IERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYE 259 (511) T ss_pred CCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcceeEEEecCCCCCCCchh Confidence 3 2211 22111 1111 0112333333332211100 00 00113555555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHh-cCc-ccCcccccCCCc Q lcl|Aclame:pro 278 ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIM-MGD-YTQVPILSGGKF 355 (945) Q Consensus 278 aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~-sG~-Nagkp~VL~~G~ 355 (945) .+...++....+.....+.+... ..|-.++. +.. ..+.++....++.---.. .+. ..+...-.++|. T Consensus 260 ~v~~liDa~d~~~S~~~~~~~~~-~~~~lv~~--g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (511) T protein:vir:10 260 KVITLIDLYDNAESDTANYMSDL-NDAMLLIK--GNL--------NLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSV 328 (511) T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-hCceeeee--ccc--------cCCchhhccchhccceecccccccccccccCCCCc Confidence 55555554443333333333322 33444432 111 111222222111100000 000 011111234455 Q ss_pred eeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHH------------HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 356 TWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAE------------VMASLTKAKGLEPLMATISK 423 (945) Q Consensus 356 k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~E------------qq~~~F~~~tL~Pll~~IEq 423 (945) +...++....+..+....+...+.|+..-++|..-.+... ++-|... ......+..+|+-.++.+.. T Consensus 329 d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~ 407 (511) T protein:vir:10 329 DGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLET 407 (511) T ss_pred ceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 6665665556666778888899999999999875443221 2222211 11223334444444444433 Q ss_pred HHHHhhc--cccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchh Q lcl|Aclame:pro 424 GFDEVVS--EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAK 501 (945) Q Consensus 424 eLn~kL~--~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~ 501 (945) .+...-. .......+.+.|......+..+.++++.++. |+++...+.+++++ +++.+.-+- .+...... T Consensus 408 ~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~~~~~~~~kl~--G~iS~et~~~~l~~--v~d~~~E~~-----ri~~E~~~ 478 (511) T protein:vir:10 408 ILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSF--FQDPELEVK-----KIEEDEKE 478 (511) T ss_pred HHHhhCCcccccccceeeEEeCCCCCcCHHHHHHHHHHHh--ccCcHHHHHHhCCC--CCCHHHHHH-----HHHHHHHH Confidence 3332211 1122235788898888889999999988884 78988777777643 222111110 01111000 Q ss_pred hccCCCCcccccccCCCCCCCCCCCCCCccccchhHH Q lcl|Aclame:pro 502 AQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKN 538 (945) Q Consensus 502 ~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~ 538 (945) . .+........+..+...++.++.+...+.++. T Consensus 479 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:10 479 S----IKKAQKGIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred H----HHHHhhhcccCCCCCCCCCCCCcccCcccccC Confidence 0 00001111111112222222222211121111 No 175 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=97.60 E-value=3.9e-05 Score=44.75 Aligned_cols=341 Identities=12% Similarity=0.063 Sum_probs=149.6 Q ss_pred cccCcccceecc-ccCCcccchhhhhhHHhhh-ccH------HHHHHHHHHHHhhccCceEEEEe-----ccCccccccc Q lcl|Aclame:pro 92 FEYSPESLMYLP-SISDPDAFFLINLFRKYRF-NND------SKLIKVSEIPKKLTSKELEIYKH-----IEDKHVNYYL 158 (945) Q Consensus 92 ~~~s~~sl~~lp-s~s~p~~~~~~~v~~~~Am-~ns------aV~aCV~iIA~~IAsLP~~VyRr-----tedg~ee~~~ 158 (945) ++.. .+..+- .|.. .........+++. .++ .+-.......+.+...|=.+... .-+|- T Consensus 1 ~~~~--~i~~L~~~~~~--~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf----- 71 (409) T protein:vir:16 1 MTEK--GIGYLRFKLSV--HKRRAEMRYEQYAMKHVDRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFREF----- 71 (409) T ss_pred CCHH--HHHHHHHHHHH--HhHHHHHHHHHHhccCchhhcchhhhHHHHHHHhhhcChhHHHHHHhHhhcccccc----- Confidence 1110 000000 0000 0000001111111 111 11111111112222221111100 00110 Q ss_pred chhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceE-EE Q lcl|Aclame:pro 159 KRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIV-VG 237 (945) Q Consensus 159 r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~-~~ 237 (945) ...+..+.+++++ |... .....+..+.+.+|.+|+.+..+..|.| .+.+++|.++..+.++..+.+ .. T Consensus 72 --~~~d~~l~~i~~~-N~ld-------~~~~~~~~~al~yG~sf~~v~~~~dg~~-~i~~~sP~~~~~i~D~~~~~~~~a 140 (409) T protein:vir:16 72 --ENDDFTVNEIFEE-NNPD-------IFFDSTVLSALIASCSFTYISKGENDAV-RLQVIEATNATGIIDPITGLLTEG 140 (409) T ss_pred --cCcchHHHHHHHh-cChh-------HHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEeecccccceee Confidence 0011223344332 2211 2234566778899999999999988986 788999999988776643322 11 Q ss_pred EEE--ee-CCcee--eeecccce----------------------eeeeeccCCCCccCccccc----HHHHHHHHHHHH Q lcl|Aclame:pro 238 YVQ--EV-DGAIV--AHFDKRDV----------------------VLFRQNLTPDVYMYGYSLP----PIEILYKVILSD 286 (945) Q Consensus 238 Yv~--~~-dG~~~--~~~~a~DV----------------------Ih~r~n~~~d~~~~GyGlS----PI~aa~~~I~~~ 286 (945) |.. .. .|... ..+.++.+ ++|..+ ++. .+.+|.| |+..+.+.+... T Consensus 141 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~--~~~-~~~~G~seI~~~v~~l~da~~r~ 217 (409) T protein:vir:16 141 YAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHR--PDA-VRPFGRSRITRSGMYWQSNAKRT 217 (409) T ss_pred eEEEEecCCCceEEEEEEecCcEEEEEecCccccceecCCCCcceEEeccc--ccc-cccCCccccchhHHHHHHHHHHH Confidence 211 11 11110 11222222 222211 111 1346766 355555666555 Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccC-----CCceeeecc Q lcl|Aclame:pro 287 IFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG-----GKFTWIDFK 361 (945) Q Consensus 287 ~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~-----~G~k~~pLs 361 (945) ..-......||. .+-..++=. ..++ +..+.++..... .+.++ ++.++.++. T Consensus 218 ~~~~~~~~e~~a---~pqr~i~G~----d~d~--------~~~~~~~~~~~~---------i~~~~~d~~g~~~~v~q~~ 273 (409) T protein:vir:16 218 LERADVTAEFYS---FPQKYVTGL----SDDA--------EPMETWKATVSS---------MLQFTKDEDGDKPTLGQFT 273 (409) T ss_pred HHHHHHHHHHhc---ChhheeEec----CCCC--------CccchhhhhhhH---------hhccCCCCCCCCceEEecC Confidence 555555666653 233344311 1111 111122222111 22221 345666665 Q ss_pred CChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHH--HHHHHHHHHHHHHHHHHHHHHh----hc--cc- Q lcl|Aclame:pro 362 GKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMA--SLTKAKGLEPLMATISKGFDEV----VS--EF- 432 (945) Q Consensus 362 ~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~--~~F~~~tL~Pll~~IEqeLn~k----L~--~~- 432 (945) ...-+ .|++..+..+.++|..=++|++.+|.... |-+..++.. ..-+....+--.+.+.+.+.+. +. .. T Consensus 274 ~~~l~-~~~~~l~~~~~~~a~~s~lP~~~lg~~~~-NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~ 351 (409) T protein:vir:16 274 QPSMS-PFTEQLRTAAAGFAGETGLTLDDLGFVSD-NPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDV 351 (409) T ss_pred CCChh-HHHHHHHHHHHHHhhhcCCCHHHcccccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 43333 58999999999999999999999986543 222222221 1111111222222333333321 10 00 Q ss_pred ----cccceeEEEeechh---hcCHHHHHHHHHHHHhCC--CcCHHHHHHHHhCCCCC Q lcl|Aclame:pro 433 ----RNEKDIKLWFKEDD---LEKERDWWNIIQGQLNTG--FRSINEARMEKGLEPVP 481 (945) Q Consensus 433 ----~~~~g~~f~fd~~~---l~D~kerae~~~~~v~~G--imT~NEaRe~lGlpPve 481 (945) .....+++.|.... ..+..+.++++.+++++| .+..+-+++++|+..-+ T Consensus 352 ~~~~~~~~~~~v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v~~~~~g~~~~d 409 (409) T protein:vir:16 352 PYLREQFSKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIKGAE 409 (409) T ss_pred CccchhhccceEEecCCCCcchhhHHHHHHHHHHHHhhcccccchhHHHHhccCCCCC Confidence 11124566776332 334577888999999986 33346679999987554 No 176 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=97.59 E-value=4e-05 Score=44.67 Aligned_cols=440 Identities=12% Similarity=0.030 Sum_probs=169.4 Q ss_pred CchhhhHhhhheeccccccCccccccch---hchhhhh------cccCCCCcchhhhhhhhhccceeeeeeeeeecceee Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIK---ANVDSLS------RGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVL 71 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~ 71 (945) ..++-|+=.-|=+.+|- ++-|.+-.+ -+.+-+. ..+..|-++-+.-|-. . ++.++ T Consensus 11 ~~~~~~~~~~~~~~~n~--~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~-g-------------~~~i~ 74 (511) T protein:vir:99 11 TDLRGNINYLFNDEANV--VYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYE-G-------------KTKNL 74 (511) T ss_pred hhhhhhhhhhhhhhhCC--ccccchhhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhc-c-------------cCccc Confidence 33444444333333332 222221111 1111111 0111111111111100 0 12222 Q ss_pred eccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 72 KKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIED 151 (945) Q Consensus 72 kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrted 151 (945) ++++.. +.. .. ++.-. ..+-....|+..++-+-+-|..+- ..+ T Consensus 75 ~~~~~~-~~~------------~~------------~~~ki----------~~n~~k~Iv~~~~~yl~g~p~~~~--~~d 117 (511) T protein:vir:99 75 VELTRR-KEE------------YM------------ADNRV----------AHDYASYISDFINGYFLGNPIQYQ--DDD 117 (511) T ss_pred cccCcc-ccc------------cc------------Cccee----------ecchHHHHHHHHHhhhcccCceee--cCc Confidence 222110 000 00 00000 011122234444555555566541 111 Q ss_pred cccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC Q lcl|Aclame:pro 152 KHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED 231 (945) Q Consensus 152 g~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d 231 (945) ......+.+++++ |.. ......+..+.+.+|.+|..+.++.+|++ .+..++|..+.++.++. T Consensus 118 ---------~~~~~~l~~~~~~-n~~-------~~~~~~~~~~~~i~G~a~~~vy~ded~~~-~i~~~~p~~~~~vyd~~ 179 (511) T protein:vir:99 118 ---------KDVLEAIEAFNDL-NDV-------ESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNT 179 (511) T ss_pred ---------hHHHHHHHHHHhh-cCH-------hHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCC Confidence 0112344555543 321 12344567788899999999988888875 68889999998887754 Q ss_pred C--ceEE--EEEEe--eCCc------eeeeecccceeeeeeccCCC--------------------C--ccCcccccHHH Q lcl|Aclame:pro 232 T--GIVV--GYVQE--VDGA------IVAHFDKRDVVLFRQNLTPD--------------------V--YMYGYSLPPIE 277 (945) Q Consensus 232 G--~~~~--~Yv~~--~dG~------~~~~~~a~DVIh~r~n~~~d--------------------~--~~~GyGlSPI~ 277 (945) . .... +|+.. .++. ....+.++.+.+++...... . .....|.|.++ T Consensus 180 ~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e 259 (511) T protein:vir:99 180 IERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYE 259 (511) T ss_pred CCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceEEecCCCCCCCchh Confidence 2 2211 22111 1111 11233444443332211000 0 00113555555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHH---HHHHhcCcccCcccccCCC Q lcl|Aclame:pro 278 ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQ---LQAIMMGDYTQVPILSGGK 354 (945) Q Consensus 278 aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~---we~~~sG~Nagkp~VL~~G 354 (945) .+...++....+..-..+.+... ..|-.++. +.. ..+.++....++. +..... ...+...-.++| T Consensus 260 ~v~~liDa~d~~~S~~~~~~~~~-~~~~lv~~--G~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 327 (511) T protein:vir:99 260 KVITLIDLYDNAESDTANYMSDL-NDAMLLIK--GNL--------NLDPVEVRKQKEANVLFLEPTV-YADSEGRETEGS 327 (511) T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-hchhhhhc--cCc--------ccCchhhcccccccceeccccc-ccccccccCCCC Confidence 55444443333332222222221 12322321 110 1111122111111 000000 000111123445 Q ss_pred ceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHH-------------HHHHHHHHHHHHHHH Q lcl|Aclame:pro 355 FTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMA-------------SLTKAKGLEPLMATI 421 (945) Q Consensus 355 ~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~-------------~~F~~~tL~Pll~~I 421 (945) .+...++....+..+....+...+.|+..-++|..-.+... ++-|. .+.. ...+..+++-.++.+ T Consensus 328 ~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~-gn~Sg-~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li 405 (511) T protein:vir:99 328 VDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQSG-EAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLL 405 (511) T ss_pred cceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 55555555555666778888899999999999976543222 22222 1111 122222333333333 Q ss_pred HHHHHHhhc--cccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccc Q lcl|Aclame:pro 422 SKGFDEVVS--EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQ 499 (945) Q Consensus 422 EqeLn~kL~--~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~ 499 (945) ...+...-. .......+++.|......+..+.++++.++. |+++...+.++++. +++.+.-+- .+.... T Consensus 406 ~~~~~~~~~~~~~~~~~~i~i~f~~~~p~n~~e~~~~~~kl~--GiiS~et~l~~l~~--v~D~~~E~~-----ri~~E~ 476 (511) T protein:vir:99 406 ETILKNTRSIDVSKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSF--FQDPELEVK-----KIEEDE 476 (511) T ss_pred HHHHHhcCCcccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhCCC--CCCHHHHHH-----HHHHHH Confidence 322221111 1112235688898888889999999888774 88988878777643 322111110 011110 Q ss_pred hhhccCCCCcccccccCCCCCCCCCCCCCCccccchhH Q lcl|Aclame:pro 500 AKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQK 537 (945) Q Consensus 500 a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k 537 (945) .............+.......++++++.+. .++++ T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~e 511 (511) T protein:vir:99 477 KESIKKAQKNMYQDPRNINDDEQDDSTKDS---IDKKE 511 (511) T ss_pred HHHHHHHhhcccccCCCCCCCCCCCCCcCc---ccccC Confidence 000000000000011111111111111111 11111 No 177 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=97.58 E-value=4.3e-05 Score=44.54 Aligned_cols=420 Identities=12% Similarity=0.031 Sum_probs=165.1 Q ss_pred eeeeeeeeeecceeeeccccccccccccCCC------CCcccccCcccceeccccCCccc--c------hhhhhhHHhhh Q lcl|Aclame:pro 57 TVVYSIIIFRKNQVLKKEKIIVPYNHQEPPF------KFNLFEYSPESLMYLPSISDPDA--F------FLINLFRKYRF 122 (945) Q Consensus 57 ~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~------~f~L~~~s~~sl~~lps~s~p~~--~------~~~~v~~~~Am 122 (945) .-.|-.+=.=+++-+-++. +...-.+.... ....+.+...-...+.....+.. . .....-....+ T Consensus 1 ~~~~~~~~~~~~~~~~~e~-i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (474) T protein:vir:94 1 MTLYKLIDDIEAQGILPKH-IEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKL 79 (474) T ss_pred CchHHHHhhccccCCCHHH-HHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCccccc Confidence 1111111111111111000 00000000000 00000000000000000000000 0 00000000012 Q ss_pred ccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeE Q lcl|Aclame:pro 123 NNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGA 202 (945) Q Consensus 123 ~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~ 202 (945) .++-....|+..+.-+-+-|+.+- ...+... .+.....+.+++.+ |. | ......+..+.+.+|.+| T Consensus 80 ~~n~~~~ivd~~~~yl~g~pv~~~-~~~~~~~-----~e~~~~~l~~~~~~-n~------~-~~~~~~~~~~~~~~G~a~ 145 (474) T protein:vir:94 80 NNSFDSEIVDTRVGYLHGVPVTYD-LDENAEK-----NEKLKKFITNFAIR-NS------V-DDEDSEIGKMAAICGYGA 145 (474) T ss_pred ccchHHHHHHhHhhheeccceeEe-eCCCCcc-----hHHHHHHHHHHHhh-cC------H-hHHHHHHHHHHhhcCeEE Confidence 233444556666665555666542 1111100 01111122233322 21 1 123455677888999999 Q ss_pred EEEEecCCCeEEEEEEcCCceeEEEEcCCCceEE--EEEEeeC--Cce----eeeecccceeeeeecc-----------C Q lcl|Aclame:pro 203 IVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVV--GYVQEVD--GAI----VAHFDKRDVVLFRQNL-----------T 263 (945) Q Consensus 203 i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~--~Yv~~~d--G~~----~~~~~a~DVIh~r~n~-----------~ 263 (945) ..+..+..|++ .+..++|..+.++.++.+.... +|....+ ++. ...+....+.++.... + T Consensus 146 ~~~~~d~~~~~-~~~~i~p~~~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 224 (474) T protein:vir:94 146 RLAYIDTNGDI-RIKNIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEH 224 (474) T ss_pred EEEEeCCCCee-EEEEEcccceEEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccC Confidence 98888888875 6888999999888776654432 1111111 110 1111222222221100 0 Q ss_pred CCC-------ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHH Q lcl|Aclame:pro 264 PDV-------YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQL 336 (945) Q Consensus 264 ~d~-------~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~w 336 (945) +.+ .....|.|-+..+...++....+.....+.+... +.|-.++. + ...+++....++ T Consensus 225 ~~g~vPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~-~~~~l~i~--g---------~~~~~~~~~~~~--- 289 (474) T protein:vir:94 225 LFDYNPLFGVPNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQT-RLAYLVLR--G---------MGMSEEMIQETQ--- 289 (474) T ss_pred CCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhc--c---------CCCCchhhhhhh--- Confidence 000 0111354545544444443333222222222221 23433332 1 122232222221 Q ss_pred HHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHH------------H Q lcl|Aclame:pro 337 QAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAE------------V 404 (945) Q Consensus 337 e~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~E------------q 404 (945) ..+...+.+++.++..+.....+..+....+...+.|...-++|..-.+... ++-|... + T Consensus 290 -------~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~ 361 (474) T protein:vir:94 290 -------KSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFN-GNVPIIGMKLKLMALENKCM 361 (474) T ss_pred -------hcceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHH Confidence 1234445566666666665555666778888899999999999975543221 2222211 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--cccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCC Q lcl|Aclame:pro 405 MASLTKAKGLEPLMATISKGFDEVVS--EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPW 482 (945) Q Consensus 405 q~~~F~~~tL~Pll~~IEqeLn~kL~--~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveG 482 (945) .....+..+++-.++.+...++..-. .......+.+.|......|..+.++++.++ .|+++...+.+++++ +++ T Consensus 362 ~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~--v~d 437 (474) T protein:vir:94 362 TFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINL--KGQVSERTRLGQSQL--VDD 437 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCC--CCC Confidence 11223444444444444444433211 112234578889888888999999998887 488998888887654 222 Q ss_pred ccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccch Q lcl|Aclame:pro 483 GDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSE 535 (945) Q Consensus 483 GD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se 535 (945) .+.-+- ........ ..+..++ ......+..+ +..+ ++ T Consensus 438 ~~~E~e-----ri~~E~~e-~~~~~~~-~~~~~~~~~~-~~~~--------s~ 474 (474) T protein:vir:94 438 VDYELD-----EMEKESLE-FNDKLPD-IDEGDANDKS-QNNQ--------SE 474 (474) T ss_pred HHHHHH-----HHHHHHHH-HHhhccc-ccCCCcCCCC-cccc--------CC Confidence 111000 00000000 0000000 0000000000 0000 00 No 178 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=97.58 E-value=4.3e-05 Score=44.54 Aligned_cols=420 Identities=12% Similarity=0.031 Sum_probs=165.1 Q ss_pred eeeeeeeeeecceeeeccccccccccccCCC------CCcccccCcccceeccccCCccc--c------hhhhhhHHhhh Q lcl|Aclame:pro 57 TVVYSIIIFRKNQVLKKEKIIVPYNHQEPPF------KFNLFEYSPESLMYLPSISDPDA--F------FLINLFRKYRF 122 (945) Q Consensus 57 ~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~------~f~L~~~s~~sl~~lps~s~p~~--~------~~~~v~~~~Am 122 (945) .-.|-.+=.=+++-+-++. +...-.+.... ....+.+...-...+.....+.. . .....-....+ T Consensus 1 ~~~~~~~~~~~~~~~~~e~-i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (474) T protein:vir:10 1 MTLYKLIDDIEAQGILPKH-IEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKL 79 (474) T ss_pred CchHHHHhhccccCCCHHH-HHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCccccc Confidence 1111111111111111000 00000000000 00000000000000000000000 0 00000000012 Q ss_pred ccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeE Q lcl|Aclame:pro 123 NNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGA 202 (945) Q Consensus 123 ~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~ 202 (945) .++-....|+..+.-+-+-|+.+- ...+... .+.....+.+++.+ |. | ......+..+.+.+|.+| T Consensus 80 ~~n~~~~ivd~~~~yl~g~pv~~~-~~~~~~~-----~e~~~~~l~~~~~~-n~------~-~~~~~~~~~~~~~~G~a~ 145 (474) T protein:vir:10 80 NNSFDSEIVDTRVGYLHGVPVTYD-LDENAEK-----NEKLKKFITNFAIR-NS------V-DDEDSEIGKMAAICGYGA 145 (474) T ss_pred ccchHHHHHHhHhhheeccceeEe-eCCCCcc-----hHHHHHHHHHHHhh-cC------H-hHHHHHHHHHHhhcCeEE Confidence 233444556666665555666542 1111100 01111122233322 21 1 123455677888999999 Q ss_pred EEEEecCCCeEEEEEEcCCceeEEEEcCCCceEE--EEEEeeC--Cce----eeeecccceeeeeecc-----------C Q lcl|Aclame:pro 203 IVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVV--GYVQEVD--GAI----VAHFDKRDVVLFRQNL-----------T 263 (945) Q Consensus 203 i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~--~Yv~~~d--G~~----~~~~~a~DVIh~r~n~-----------~ 263 (945) ..+..+..|++ .+..++|..+.++.++.+.... +|....+ ++. ...+....+.++.... + T Consensus 146 ~~~~~d~~~~~-~~~~i~p~~~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 224 (474) T protein:vir:10 146 RLAYIDTNGDI-RIKNIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEH 224 (474) T ss_pred EEEEeCCCCee-EEEEEcccceEEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccC Confidence 98888888875 6888999999888776654432 1111111 110 1111222222221100 0 Q ss_pred CCC-------ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHH Q lcl|Aclame:pro 264 PDV-------YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQL 336 (945) Q Consensus 264 ~d~-------~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~w 336 (945) +.+ .....|.|-+..+...++....+.....+.+... +.|-.++. + ...+++....++ T Consensus 225 ~~g~vPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~-~~~~l~i~--g---------~~~~~~~~~~~~--- 289 (474) T protein:vir:10 225 LFDYNPLFGVPNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQT-RLAYLVLR--G---------MGMSEEMIQETQ--- 289 (474) T ss_pred CCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhc--c---------CCCCchhhhhhh--- Confidence 000 0111354545544444443333222222222221 23433332 1 122232222221 Q ss_pred HHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHH------------H Q lcl|Aclame:pro 337 QAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAE------------V 404 (945) Q Consensus 337 e~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~E------------q 404 (945) ..+...+.+++.++..+.....+..+....+...+.|...-++|..-.+... ++-|... + T Consensus 290 -------~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~ 361 (474) T protein:vir:10 290 -------KSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFN-GNVPIIGMKLKLMALENKCM 361 (474) T ss_pred -------hcceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHH Confidence 1234445566666666665555666778888899999999999975543221 2222211 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--cccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCC Q lcl|Aclame:pro 405 MASLTKAKGLEPLMATISKGFDEVVS--EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPW 482 (945) Q Consensus 405 q~~~F~~~tL~Pll~~IEqeLn~kL~--~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveG 482 (945) .....+..+++-.++.+...++..-. .......+.+.|......|..+.++++.++ .|+++...+.+++++ +++ T Consensus 362 ~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~--v~d 437 (474) T protein:vir:10 362 TFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINL--KGQVSERTRLGQSQL--VDD 437 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCC--CCC Confidence 11223444444444444444433211 112234578889888888999999998887 488998888887654 222 Q ss_pred ccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccch Q lcl|Aclame:pro 483 GDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSE 535 (945) Q Consensus 483 GD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se 535 (945) .+.-+- ........ ..+..++ ......+..+ +..+ ++ T Consensus 438 ~~~E~e-----ri~~E~~e-~~~~~~~-~~~~~~~~~~-~~~~--------s~ 474 (474) T protein:vir:10 438 VDYELD-----EMEKESLE-FNDKLPD-IDEGDANDKS-QNNQ--------SE 474 (474) T ss_pred HHHHHH-----HHHHHHHH-HHhhccc-ccCCCcCCCC-cccc--------CC Confidence 111000 00000000 0000000 0000000000 0000 00 No 179 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=97.43 E-value=6.8e-05 Score=43.43 Aligned_cols=428 Identities=14% Similarity=0.091 Sum_probs=164.3 Q ss_pred CchhhhHhhh------heeccccccCcccc-----ccchhchhhhhcc--cCCCCcchhhhhhhhhccceeeeeeeeeec Q lcl|Aclame:pro 1 MKSLENIIKG------FIVNANEQKRPSFS-----SNIKANVDSLSRG--KDYPGFKPLLTYRALAWNSTVVYSIIIFRK 67 (945) Q Consensus 1 ~~~~~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 67 (945) -.-...+||| |=-.+++.+.--|- ..+..-+..+-+. ..+|-.+-+..| |. -+ T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~Y----------Y~----g~ 73 (492) T protein:vir:94 8 SQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEY----------YE----QR 73 (492) T ss_pred HHHHHHHhcCCceeecCccchhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH----------hc----cc Confidence 1111223333 11122222111110 0111100000000 001111111110 00 01 Q ss_pred ceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEE Q lcl|Aclame:pro 68 NQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYK 147 (945) Q Consensus 68 n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyR 147 (945) +.+++++.+..... .+ .. ..++. .+..+....+|+..++-+-+-|+.+- T Consensus 74 ~~I~~~~~~~~~~~---~~----------~~-------~~~~~----------ri~~n~~k~Ivd~~~~yl~G~p~~~~- 122 (492) T protein:vir:94 74 PDIVKEPKPVDATG---AV----------DP-------LKPDD----------RMITNFHANLVDQKVSYIVGKPIAFK- 122 (492) T ss_pred cccccccccccccc---cc----------cc-------ccccc----------ccccchHHHHHHHHHhhhcccCceec- Confidence 22222221100000 00 00 00000 01123344456666666656666541 Q ss_pred eccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEE Q lcl|Aclame:pro 148 HIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPI 227 (945) Q Consensus 148 rtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~ 227 (945) .+.+ .....+..++. |. |.. ....+..+.+.+|.+|..+..+.+|++ .+..++|..+.++ T Consensus 123 --~~d~--------~~~~~l~~~~~--n~------~~~-~~~~~~~~a~~~G~a~~~v~~d~dg~~-~~~~~~p~~~~~v 182 (492) T protein:vir:94 123 --HTDD--------EVVKRIDEVLG--NR------FDD-KLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPI 182 (492) T ss_pred --cCch--------HHHHHHHHHHh--cc------HHH-HHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceEEE Confidence 1110 01122333332 31 212 234566778899999999988888886 5888999999887 Q ss_pred EcCC--CceEE--EEEEeeCCceeeeecccceeeeeecc--------------------CCCCc-------cCcccccHH Q lcl|Aclame:pro 228 LSED--TGIVV--GYVQEVDGAIVAHFDKRDVVLFRQNL--------------------TPDVY-------MYGYSLPPI 276 (945) Q Consensus 228 ~d~d--G~~~~--~Yv~~~dG~~~~~~~a~DVIh~r~n~--------------------~~d~~-------~~GyGlSPI 276 (945) .++. +.... +|+...+......+....+.++.... ++.+. ....|.|-+ T Consensus 183 ~d~~~~~~~~a~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~sd~ 262 (492) T protein:vir:94 183 WTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDI 262 (492) T ss_pred EcCCCCCceEEEEEEEeeccceeEEEEecCeEEEEEEecCeeeeccccccccccccccccCCCccceEEecCCCCCCCch Confidence 7532 22221 12111111111222222222221100 00000 012356666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCce Q lcl|Aclame:pro 277 EILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFT 356 (945) Q Consensus 277 ~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k 356 (945) +.....++....+....++.+.. .+.|-.++. +. +.+....++..+. ..+++.++++.+ T Consensus 263 e~v~~liDa~d~~~S~~~~~~~~-~~~p~lv~~--g~-----------~~~~~~~~~~~~~-------~~~~~~~~~~~~ 321 (492) T protein:vir:94 263 FMYKTLIDAYNRRLSDLSNTFKD-SNELTYVLK--NY-----------DDQELPEFKRLLR-------YYGAIKVSDNGG 321 (492) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCceeeee--cC-----------CcccchhhHHHHh-------hccceecCCCCc Confidence 66555555544444333333332 234544442 11 1111112222111 122233444444 Q ss_pred eeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHH-------------HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 357 WIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMA-------------SLTKAKGLEPLMATISK 423 (945) Q Consensus 357 ~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~-------------~~F~~~tL~Pll~~IEq 423 (945) ...+........+....+...+.|+..-++|..-.+.. .++-| .++.. ...+...++-.++.+.. T Consensus 322 ~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~~n~S-g~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~ 399 (492) T protein:vir:94 322 VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKF-GSAPS-GVALEFLYTNLNLKADKLARKAKVAIQELLWFVFE 399 (492) T ss_pred ceeEeccCCHHHHHHHHHHHHHHHHHHhCCcCCCcccc-ccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 44444444445566777888899999999985433211 12222 22221 11122222222222222 Q ss_pred HHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhc Q lcl|Aclame:pro 424 GFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQ 503 (945) Q Consensus 424 eLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~ 503 (945) .++ .......+.+.|+.....+..+.++++.++. |+++...++++++. +++.+.-+- .......... T Consensus 400 ~~~----~~~~~~~i~v~f~~~~p~~~~e~~~~~~kl~--giiS~et~~~~l~~--v~d~~~E~e-----ri~~E~~~~~ 466 (492) T protein:vir:94 400 HFD----IKGEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPF--VEDLQAELE-----RIEQEQMEYN 466 (492) T ss_pred Hhc----CCcccceeeEEecCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCC--CCCHHHHHH-----HHHHHHHHHH Confidence 111 1123345788898888889999999888874 78988888777654 222111100 0000000000 Q ss_pred cCCCCcccccccCCCCCCCCCCCCCCccccchhH Q lcl|Aclame:pro 504 QGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQK 537 (945) Q Consensus 504 ~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k 537 (945) .. .+..... ...++..++.+ ...+.+ T Consensus 467 ~~-----~~~~~~~--~~~~~~~~~~~-~~~e~e 492 (492) T protein:vir:94 467 KQ-----LPNLDDG--GADSAQQQERS-NNKESE 492 (492) T ss_pred hh-----ccccccc--cCCCCccccCC-ccccCC Confidence 00 0000000 00001111111 011111 No 180 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=97.42 E-value=7e-05 Score=43.36 Aligned_cols=390 Identities=12% Similarity=0.026 Sum_probs=150.4 Q ss_pred ccccCCCCCcccccCc---ccceec-cccCC--cc----------------cchhhhhhHHhhhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 81 NHQEPPFKFNLFEYSP---ESLMYL-PSISD--PD----------------AFFLINLFRKYRFNNDSKLIKVSEIPKKL 138 (945) Q Consensus 81 ~~r~pp~~f~L~~~s~---~sl~~l-ps~s~--p~----------------~~~~~~v~~~~Am~nsaV~aCV~iIA~~I 138 (945) -+..||.-|.++.... +.+..+ ..+.. +. .......-....+..+.....|+..+.-+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l 80 (452) T protein:vir:36 1 MKYKPPKLMTFSKDEPITVEVVTKFMEKHKLEVARYEYLKNMYLGIMAIDDEPAKDSWKPDNRLAVNFTKYIVDTFTGYF 80 (452) T ss_pred CcccCceeEEcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCccccccCccceeecchHHHHHHHHhhhh Confidence 1111221122211000 000000 00000 00 00000000000111123333334333333 Q ss_pred ccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEE Q lcl|Aclame:pro 139 TSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITP 218 (945) Q Consensus 139 AsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~p 218 (945) -+-|+.+-- .+ ......+.++++. |.. ......+..+.+.+|.+|..+..+.+|++ .+.. T Consensus 81 ~g~~~~~~~--~d---------~~~~~~l~~~~~~-n~~-------~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~ 140 (452) T protein:vir:36 81 NGIPVKKSH--SD---------KEILTKLQEFDNL-NDM-------EDEESELAKMACIYGRAFEFLYQDEDTQT-NVVY 140 (452) T ss_pred cccCceeec--CC---------hhHHHHHHHHHhh-cCh-------hHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEE Confidence 333433210 00 0011223333322 211 12344566778899999999888888886 5788 Q ss_pred cCCceeEEEEcCCCc-eEE---EEEEeeCCce-eeeecccceeeeeec----------cC-----CCC--ccCcccccHH Q lcl|Aclame:pro 219 VDGTTIKPILSEDTG-IVV---GYVQEVDGAI-VAHFDKRDVVLFRQN----------LT-----PDV--YMYGYSLPPI 276 (945) Q Consensus 219 LdPs~Vtv~~d~dG~-~~~---~Yv~~~dG~~-~~~~~a~DVIh~r~n----------~~-----~d~--~~~GyGlSPI 276 (945) ++|..+.++.++... .+. +|+...++.. ...+.++.+.++... ++ |-. .....|.|-+ T Consensus 141 ~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n~~~g~sd~ 220 (452) T protein:vir:36 141 NSPENMFMVYDDTVKQEPLFAVRYGVDEDKKLQGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFYFNEERMSIF 220 (452) T ss_pred EcccceEEEEcCCCCCceEEEEEEEEecCceEEEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEecCCCCCCcch Confidence 999999888765432 111 1221122211 112222222222110 00 000 0012355555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc----- Q lcl|Aclame:pro 277 EILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS----- 351 (945) Q Consensus 277 ~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL----- 351 (945) ......++....+.....+.+.. .+.|-.++. + ..++++....++.. +.+.+ T Consensus 221 e~v~~liDa~d~~~s~~~~~~~~-~~~p~~~~~--g---------~~~~~~~~~~~~~~-----------~~~~~~~~~~ 277 (452) T protein:vir:36 221 ESVISLVNAFNKAISEKANDVDY-FSDQYLTFL--G---------AAVEEEDLKNIRSN-----------RVINYYADGE 277 (452) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCceeEee--c---------CCcCchhhhhhhhc-----------ceEEecCCCC Confidence 54444444433333333332222 234544442 1 12233333332210 11111 Q ss_pred CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHH Q lcl|Aclame:pro 352 GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLM 418 (945) Q Consensus 352 ~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll 418 (945) +.+.++..+..+..+..+....+...+.|+..-++|..-.+ ..++-|+ ++. ....+..+++..+ T Consensus 278 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~--~~gn~Sg-~Al~~~~~~l~~k~~~~~~~~~~~l~~~~ 354 (452) T protein:vir:36 278 GKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANISDE--SFGSSSG-VSLAYKLQAMSNLALSFQRKFQSSLNSRY 354 (452) T ss_pred ccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCccccCcc--cccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11222333333344556677788899999999999854322 2222222 221 1223334444444 Q ss_pred HHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccccccccccccccc Q lcl|Aclame:pro 419 ATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDE 498 (945) Q Consensus 419 ~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~ 498 (945) +.+...+... ........+.+.|......|..+.++++.++ .|+++..-+.+.++. +++.+.-+- ..... T Consensus 355 ~li~~~~~~~-~~~~~~~~i~i~f~~~~p~d~~~~a~~~~k~--~g~iS~et~~~~~~~--~~d~~~E~~-----ri~~E 424 (452) T protein:vir:36 355 KLFCELSTNV-SNKDSWKDIEYTFTRNEPKDIKEQAETANIL--MGITSQETALSVISV--IPDVQAEME-----KIKKE 424 (452) T ss_pred HHHHHHHhcc-CCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHH-----HHHHH Confidence 4433322221 1112233567888888888999999988876 578988777776653 222111110 00000 Q ss_pred chhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 499 QAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 499 ~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) .... +...+ ...+.+...+...+.++.+ T Consensus 425 ~~~~---~~~~~-~~~~~~~~~~~~~~~~~~e 452 (452) T protein:vir:36 425 EAST---AIFDK-DKQPSEKGTDTVVSETNEE 452 (452) T ss_pred HHHH---HHHHh-hccCCCCcccccCccccCC Confidence 0000 00000 0000010010000111111 No 181 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=97.34 E-value=9e-05 Score=42.77 Aligned_cols=370 Identities=9% Similarity=-0.030 Sum_probs=147.6 Q ss_pred cCcccceeccccCCcccchhhhhhHH--------------------hhhccHHHHHHHHHHHHhhccCceEEEEeccCcc Q lcl|Aclame:pro 94 YSPESLMYLPSISDPDAFFLINLFRK--------------------YRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKH 153 (945) Q Consensus 94 ~s~~sl~~lps~s~p~~~~~~~v~~~--------------------~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ 153 (945) -.++-+..+-.--.... ....-+.+ ..+..+....+|+..+.-+-+-|+.+- . +. T Consensus 1 l~~~~l~~~i~~~~~~~-~r~~~l~~yy~g~~~il~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~-~--~~- 75 (429) T protein:vir:98 1 MTKDLLSELIQKHRSFN-LSYSAYKQLYEGDHAILQQKQKEQYKPDNRLVVNFAKYIVDTFNGYFIGVPVQTS-H--EN- 75 (429) T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHhccccccccccccccCCCcceeecchHHHHHHHHhhhhcccCceee-c--CC- Confidence 11111111100000000 00000000 012223334444444444444444321 0 00 Q ss_pred cccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCc Q lcl|Aclame:pro 154 VNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTG 233 (945) Q Consensus 154 ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~ 233 (945) ......+..++++ |.. ......+..+.+.+|.+|..+..+.+|++ .+..++|..+.++.++... T Consensus 76 -------~~~~~~l~~~~~~-n~~-------~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~~~~~~p~~~~~v~dd~~~ 139 (429) T protein:vir:98 76 -------KQVSNYLELLDGY-NDQ-------DDNNAELSKICSIYGHGYELVFNDENAEA-GITYLTPLEAFIVYDDSIR 139 (429) T ss_pred -------hHHHHHHHHHHhh-cCH-------hHHHHHHHHHHhhcCeEEEEEEecCCCcE-EEEEEcccceEEEEeCCCC Confidence 0011123333332 211 12345567788899999999889999986 5788999999887765432 Q ss_pred -eEE---EEEEeeCCceeeeecccceeeeee-----------ccCCCC-------ccCcccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 -IVV---GYVQEVDGAIVAHFDKRDVVLFRQ-----------NLTPDV-------YMYGYSLPPIEILYKVILSDIFIDK 291 (945) Q Consensus 234 -~~~---~Yv~~~dG~~~~~~~a~DVIh~r~-----------n~~~d~-------~~~GyGlSPI~aa~~~I~~~~aaee 291 (945) .+. +|....++.....+...+.++... .+++.+ .....|.|-+..+...++....+.. T Consensus 140 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liD~~d~~~s 219 (429) T protein:vir:98 140 QKPLFAVRYFYNKGGVLEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIEYVENEERQSLLASVVTLINAFNKAIS 219 (429) T ss_pred CceEEEEEEEEecCceEEEEEEeCceEEEEEecCCceEecccccccCCccceEEecCCCCCCCcHHHHHHHHHHHHHHHH Confidence 111 122222211111111111111100 000000 0112466666665555555444433 Q ss_pred HHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccC----CCceeeeccCChhhH Q lcl|Aclame:pro 292 GNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG----GKFTWIDFKGKRRDM 367 (945) Q Consensus 292 ~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~----~G~k~~pLs~sp~D~ 367 (945) ...+.... .+.|-.+++ + ...+++....++. ++.+.++ .+.+...+..+.... T Consensus 220 ~~~~~~~~-~~~p~~~i~--g---------~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (429) T protein:vir:98 220 EKANDVEY-FADAYLKIL--G---------AELDDETLKSLRD-----------TRIINLKDTDAQQLTVEFLQKPDADA 276 (429) T ss_pred HHHHHHHH-hcCceeeee--c---------CCCCcchhhhHhh-----------CceeeccCCCCCCcceeEEeecCCHH Confidence 33333322 234544443 1 1122222222211 1112221 122333333334444 Q ss_pred HHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 368 QFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMAS-------------LTKAKGLEPLMATISKGFDEVVSEFRN 434 (945) Q Consensus 368 QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~-------------~F~~~tL~Pll~~IEqeLn~kL~~~~~ 434 (945) .+....+...+.|+..-++|..-.+ ..++-| .++... ..+..+++-.++.+...++..- .... T Consensus 277 ~~~~~~~~l~~~i~~~s~~p~~~~~--~~gn~S-g~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~-~~~d 352 (429) T protein:vir:98 277 TQEHLLDRLENLIFRTAMVANISDE--SFGTAS-GIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKI-GPKD 352 (429) T ss_pred HHHHHHHHHHHHHHHHhCccccCcc--ccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-Cccc Confidence 5667788899999999999854322 212221 122111 1122222222222222221111 1112 Q ss_pred cceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccc Q lcl|Aclame:pro 435 EKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQA 514 (945) Q Consensus 435 ~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~ 514 (945) ..++.+.|......|..+.++++.++ +|+++...+.++++. +++.+.-+-. . .. .+......+.... T Consensus 353 ~~~i~v~f~~~~p~~~~~~a~~~~kl--~g~is~et~~~~l~~--v~d~~~E~~r-----i---~~-E~~~~~~~~~~~~ 419 (429) T protein:vir:98 353 WIGIKYKFTRNLPANLLEESQIAGNL--AGIVSEETQVGVLSI--VENPQKEIER-----K---NS-DKSTLISRQAGGL 419 (429) T ss_pred cccceEEeCCCCCcCHHHHHHHHHHH--hccCchHHHHHhCCC--CCCHHHHHHH-----H---HH-HHHHHHHHHHhhh Confidence 23467888888888999999988877 578988667766654 2221111100 0 00 0000000000000 Q ss_pred cCCCCCCCCCCCCCC Q lcl|Aclame:pro 515 MADQPSQQGGGVDEN 529 (945) Q Consensus 515 ~~d~~~~~~g~~dd~ 529 (945) ..+. + .++.+ T Consensus 420 ~~~~----~-~~~~~ 429 (429) T protein:vir:98 420 NGQN----T-TTILE 429 (429) T ss_pred cCCC----C-CCCCC Confidence 0110 0 01111 No 182 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=97.33 E-value=9.2e-05 Score=42.71 Aligned_cols=402 Identities=14% Similarity=0.051 Sum_probs=151.0 Q ss_pred cceeeeccccccccccccCCCCCcccccCcccceecc-ccCCcccchhhhhhHHhh------------------------ Q lcl|Aclame:pro 67 KNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLP-SISDPDAFFLINLFRKYR------------------------ 121 (945) Q Consensus 67 ~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lp-s~s~p~~~~~~~v~~~~A------------------------ 121 (945) --.+|+-|.-..-+.+...-. -+.....++-+..+- .+.. . ......+.+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~i~~~~~-~-~~~~~~~~~Yy~g~~~i~~r~~~~~~~~~~~~~~~ 77 (474) T protein:vir:95 1 MFNIIRMPWDKPYGEEVVEQL-KPQFETQEEMIIRLIDDHRK-Q-LDKITVGQRYYDKDNDIVKQMKKVDVYGNIDYDKP 77 (474) T ss_pred CcceeecCCCCchhhHHHHhh-hhccCChHHHHHHHHHHHHH-H-HHHHHHHHHHhcccCchhccccccccccccccccc Confidence 011122221100000000000 000000000000000 0000 0 00000000000 Q ss_pred ---hccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 122 ---FNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTI 198 (945) Q Consensus 122 ---m~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~ 198 (945) +..+-....|+..++-+-+-|+.+- ..+ ......+..++. |. +......+..+.+.+ T Consensus 78 ~~ki~~n~~~~Ivd~~~~~l~g~p~~~~--~~d---------~~~~~~l~~~~~--n~-------~~~~~~e~~~~~~~~ 137 (474) T protein:vir:95 78 DWRITTNFHQNLVDQKVSYVASKPVTYS--CED---------ESVLKIIHDVLD--TR-------WDNKLIDILTATSNK 137 (474) T ss_pred cceeccchHHHHHHHHHhhhccCCceec--cCc---------hHHHHHHHHHHh--cc-------HHHHHHHHHHHHhhc Confidence 0012222233333333333333321 000 000111222221 11 112344567788899 Q ss_pred CCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC--CceE--EEEEEeeCCceeeeecccceeeeeecc------------ Q lcl|Aclame:pro 199 DRGAIVKIRDEQGNLVAITPVDGTTIKPILSED--TGIV--VGYVQEVDGAIVAHFDKRDVVLFRQNL------------ 262 (945) Q Consensus 199 Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d--G~~~--~~Yv~~~dG~~~~~~~a~DVIh~r~n~------------ 262 (945) |.+|..+..+.+|++ .+..++|..+.++.++. +... .+|+...+......+....+.+++... T Consensus 138 G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 216 (474) T protein:vir:95 138 GIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGAN 216 (474) T ss_pred CcEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEEcCeeEEEEEeCCeEEEEEEcCCccccccccCcc Confidence 999998888888876 58889999998877643 2221 122221111222223333332222110 Q ss_pred --------CCCC-------ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHH Q lcl|Aclame:pro 263 --------TPDV-------YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSRE 327 (945) Q Consensus 263 --------~~d~-------~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~E 327 (945) ++.+ .....|.|-++.+...++....+.....+.+... +.|-.++ .+... + T Consensus 217 ~~~~~~~~~~~g~iPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~-~~p~lv~--~g~~~-----------~ 282 (474) T protein:vir:95 217 HIQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSLIDAIDKRLSDAQNMFDES-VELIYIL--KGYEG-----------Q 282 (474) T ss_pred cccccccccCCCccceEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh-cCceeee--ecCCc-----------c Confidence 0000 0012355656555555554333333333333322 3444343 22110 1 Q ss_pred HHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-- Q lcl|Aclame:pro 328 QLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-- 405 (945) Q Consensus 328 q~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-- 405 (945) ..+.+... ....+++.+++|.+...++.......+....+...+.|+..-++|..--+.. .++-|. .+. T Consensus 283 ~~~~~~~~-------~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~n~Sg-~Alk~ 353 (474) T protein:vir:95 283 DLEEFMRG-------LKYYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRAYIMEFGQGVDFQTDKF-GSAPSG-IALKF 353 (474) T ss_pred cchhhhhh-------hhccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccc-cccchH-HHHHH Confidence 11111111 1123345556655555555555666777888899999999999996432211 122221 111 Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHH Q lcl|Aclame:pro 406 -----------ASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARME 474 (945) Q Consensus 406 -----------~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~ 474 (945) ....+...++.+++.+.+. +-.......+.+.|+.....|..+.+++ +.+.|+++...+.+. T Consensus 354 ~~~~l~~k~~~k~~~~~~~l~~~~~li~~~----~g~~~d~~~i~v~f~~~~p~d~~e~a~~---~~~~g~iS~et~i~~ 426 (474) T protein:vir:95 354 LYGNLDLKANKLKNKATVAIQELIGFIIDF----NNLKMDVKDIEISFNFNRMMNDAEQSQI---IAQSQYLSRETLVKS 426 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCcccceeeEEeccCCCcCHHHHHHH---HHhcCCCchHHHHHh Confidence 1122233333333333222 1112233456788877777776666665 456799998888776 Q ss_pred HhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccc Q lcl|Aclame:pro 475 KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPS 534 (945) Q Consensus 475 lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~s 534 (945) +++ +++.+.-+- .............. .....+.+...+.....++. ++ T Consensus 427 l~~--v~d~~~E~~-----ri~~E~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~---~~ 474 (474) T protein:vir:95 427 SPL--VDDYKAELE-----RIEQEQMEYNKQLP--NLDDGGADGAQQQERSNDKE---SE 474 (474) T ss_pred CCC--CCCHHHHHH-----HHHHHHHHHHhccc--ccccccCCCCcCCCCCccCC---CC Confidence 643 222221110 01111110000000 01111111111111111111 11 No 183 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=97.32 E-value=9.5e-05 Score=42.64 Aligned_cols=462 Identities=13% Similarity=0.083 Sum_probs=179.5 Q ss_pred ceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceeccc---cCCcccchhhhhhHHhhhccHHHHHHHH Q lcl|Aclame:pro 56 STVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPS---ISDPDAFFLINLFRKYRFNNDSKLIKVS 132 (945) Q Consensus 56 ~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps---~s~p~~~~~~~v~~~~Am~nsaV~aCV~ 132 (945) -.-.+-..|-++.++.++..+++|.+....... .....+.+..- ....+.+.+++-+++. +.+|.|..||+ T Consensus 1 m~~lfgf~~~~~~~~~~~~~s~~~p~~ddg~~~-----~~~~g~~~~~~~~~~~~~~~~eLI~~YR~m-a~~pEvd~Av~ 74 (558) T protein:vir:10 1 MAKLFGFSIEETQKKSTSIISPVPKNNEDGVDN-----FISSGFYGQYVDIEGAYRSEYDLIRRYREM-ALHPEADGAIE 74 (558) T ss_pred CcchhcchhhhhhhhccCCccccCCCccccccc-----eeccceeeeeecccchhhhHHHHHHHHHHH-hhccchhhHHH Confidence 112223334344444333333322221111101 11111111100 0112345567777777 58899999999 Q ss_pred HHHHhhcc-----CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEe Q lcl|Aclame:pro 133 EIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIR 207 (945) Q Consensus 133 iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iir 207 (945) .|.+.+.- -|..|-= ++.....+.+. ........+++--|-..++++. ++.++..|..|+.++. T Consensus 75 eIVneaiv~d~~~~pV~i~L--d~~~~s~~iK~-kI~eEF~~Il~ll~F~~~~~e~--------fR~WYVDgRiyfHKii 143 (558) T protein:vir:10 75 DVVNEAIVSDLYDSPVEVEL--SNLNASNTLKK-KIREEFRYIKEMMDFDKKSHEI--------FRNWYVDGRVFYLKVI 143 (558) T ss_pred HhhcceeEecCCCceEEEEe--cccCcchHHHH-HHHHHHHHHHHHhccchhhhHH--------HhhheeeeEEEEEEEE Confidence 99987752 2222211 11111111111 1112223333322444455554 4555788999988876 Q ss_pred cCC---CeEEEEEEcCCceeEEEEcCC----------------C-----ceEEEEEEeeCC------------ceeeeec Q lcl|Aclame:pro 208 DEQ---GNLVAITPVDGTTIKPILSED----------------T-----GIVVGYVQEVDG------------AIVAHFD 251 (945) Q Consensus 208 d~~---G~pveL~pLdPs~Vtv~~d~d----------------G-----~~~~~Yv~~~dG------------~~~~~~~ 251 (945) |.. ..+.+|++|+|..++.++.-. + +....|.|...+ +....+ T Consensus 144 d~k~pk~GI~ELr~lDPr~i~~Vr~i~~~~~~~~~~~~~~~~~~~~~~~~~~eyy~Y~~~~~~~~~~~~~~~~~~~vkI- 222 (558) T protein:vir:10 144 DTKNPQEGIQDLRYIDPLKIKFIRQEKRKPGNQDPAIRVRSEQDVVPNPEFEEFYIYTPKVQHPTGMVGQMGGKNSIKI- 222 (558) T ss_pred eCCCccccceeeeeeCcccceeeeeeccccccccceeeeecccceeeccceeEeeeecCCcccccccceeecCCCceee- Confidence 533 358899999999997654320 1 111223333321 111222 Q ss_pred ccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHH Q lcl|Aclame:pro 252 KRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLES 331 (945) Q Consensus 252 a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~er 331 (945) +.+.|++..----+ ...++=+|-+..|...+....-++.. .-.++=..++-+-|+...-|.. |..-.++=... T Consensus 223 ~~dAI~y~hSGL~d-~~~~~i~syLhkAIKp~NQLkmlEDA-lVIYRitRAPERRvFYIDVGnL-----Pk~KAeqYlr~ 295 (558) T protein:vir:10 223 AKDSITMCTSGLVD-RNKNRVLSYLHKAIKALNQLRMIEDS-LVIYRLSRAPERRIFYIDVGNL-----PKVKAEQYLKE 295 (558) T ss_pred chhheeeeccccee-cCCCeeeecchHhhHhHHhhHHHHhh-HHHHhhhccccceEEEEecCCC-----CchhHHHHHHH Confidence 23444432210000 01222334566666666554444443 2233334566666766654322 11111111222 Q ss_pred HHHHHHHHh-----cC--ccc--Ccccc----c-----CCCceeeeccC--ChhhHHHHHHHHHHHHHHHHHhcCChhhc Q lcl|Aclame:pro 332 IQRQLQAIM-----MG--DYT--QVPIL----S-----GGKFTWIDFKG--KRRDMQFKELAEFVARKICAVYQVSPQDV 391 (945) Q Consensus 332 lKe~we~~~-----sG--~Na--gkp~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~~~eeIA~aFGVPP~lL 391 (945) +...+++.. .| .+. ...|+ | +.|.+.+.+.- +.-++ +-.+|..+...++++||.+-| T Consensus 296 iM~k~KNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnLgem---~DV~YF~kKLy~aLnVP~SRl 372 (558) T protein:vir:10 296 VMSRYRNKLVYDANTGEVRDDRKFMSMMEDFWLPRREGGRGTEITTLPGGQNLGEL---SDVDYFQKKLYRALGVPESRI 372 (558) T ss_pred HHHhccceEEEeccCceecccchhhhhHhhhcccccCCCCccceeeccccCCcchH---HHHHHHHHHHHHHhCCCcccc Confidence 222222211 12 111 11121 1 23566666543 33343 345678899999999999999 Q ss_pred ccccCCCcccH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeEEEeechhhcC------ Q lcl|Aclame:pro 392 GILEGSNKATA---EVMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIKLWFKEDDLEK------ 449 (945) Q Consensus 392 G~~e~gT~SN~---Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~f~fd~~~l~D------ 449 (945) +.-...+...+ .-.-..| ...+.-+..++...+...|... ++ ...+.++|..+..-. T Consensus 373 ~~e~~f~~Gr~~EItRDEiKF-~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~E 451 (558) T protein:vir:10 373 AAEGGFNLGRSSEILRDELKF-AKFVGRLRKRFAAMFNDMLKTQLVLKNIVTPEDWKTMEDHIQYDFLYDNQFAELKESE 451 (558) T ss_pred CCCCcccccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHH Confidence 75433332222 1112233 3345556666666655444222 22 234566666554432 Q ss_pred -HHHHHHHHHHHHh--CCCcCHHHHHH-HHhCCCCC--Cccccc---ccccccc-ccccchhhccCCCCcccccccCCCC Q lcl|Aclame:pro 450 -ERDWWNIIQGQLN--TGFRSINEARM-EKGLEPVP--WGDVPF---SGLRNWK-PEDEQAKAQQGAMPPQLAQAMADQP 519 (945) Q Consensus 450 -~kerae~~~~~v~--~GimT~NEaRe-~lGlpPve--GGD~~l---~~~n~~~-ped~~a~~~~~a~~~~~~~~~~d~~ 519 (945) +..|+.+++.+-. .-.++.+=+|+ .+.+.-.+ ..+... ..-+.++ |......+ .+..|.+ .+.. T Consensus 452 il~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeeI~~~~kqI~~E~k~~~~~~p~~~~~~~-~~~~~~~-----~~~~ 525 (558) T protein:vir:10 452 LMEGRLGMLATIEPYIGKYYSTEYVRKRVLRQTDMEIEEIDTQIEDEIQKGIIPDPSQIDPIT-GEPLPQE-----GDPA 525 (558) T ss_pred HHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCccccChhh-ccccCcc-----CCch Confidence 3345555554422 11334444433 23332110 000000 0000000 00000000 0000000 0000 Q ss_pred CCCCCCCCCCccccchhHHHHHHHHHHHHhhhhhhhhHHHHHhhcc Q lcl|Aclame:pro 520 SQQGGGVDENSSVPSEQKNAGLEVLRNLFKSLDANASENLKQVIEL 565 (945) Q Consensus 520 ~~~~g~~dd~e~~~se~k~a~~~~lr~~~k~l~a~~~~~~~~~~dl 565 (945) .+ +.+....++......+++ +|..... -..++| T Consensus 526 ~~-~~~~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~ 558 (558) T protein:vir:10 526 ME-GMGEQPVDPDLEAQAQAV-----------DAQYSKD-TKKAEL 558 (558) T ss_pred hc-cCCCCCcccccccchhhh-----------hhhhhhh-hhhhcC Confidence 00 000000000000000000 0000000 011111 No 184 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=97.30 E-value=0.0001 Score=42.47 Aligned_cols=403 Identities=13% Similarity=0.068 Sum_probs=163.1 Q ss_pred CchhhhHhhhheeccccccCccccccchhchhhhhcccC-CCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccc Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIKANVDSLSRGKD-YPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVP 79 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p 79 (945) +..-+.+++. |-....+.|+ ..+.+.++ |.|-.+. +.+++.... T Consensus 18 ~~~~~~~~~~-i~~~~~~~~~----------~~~~~~~~yy~g~~~i------------------------~~~~~~~~~ 62 (479) T protein:vir:79 18 KESTINLVKV-IEHYILKHRP----------EKYKQGEEYYYGNTDV------------------------NNKRRYYLL 62 (479) T ss_pred cCChhHHHHH-HHHHHhhhhH----------HHHHHHHHHhccCCcc------------------------ccccccccc Confidence 1111111111 1111112221 11222222 2232222 111111000 Q ss_pred cccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccc Q lcl|Aclame:pro 80 YNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLK 159 (945) Q Consensus 80 ~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r 159 (945) .-....+. ..++.- +.++-....|+..+.-+-+-|..+- .+.+ T Consensus 63 ~~~~~~~~------------------~~~~~k----------i~~~~~~~Ivd~~~~~l~g~p~~~~---~~~~------ 105 (479) T protein:vir:79 63 DGAKVDDF------------------TKVNNK----------AINNYHKLLVDQKVGYSVGNPIVFN---ADDD------ 105 (479) T ss_pred cccccccc------------------ccCcce----------eecchHHHHHHHHHhhhhcCCceec---cCCH------ Confidence 00000000 000000 0112233345555555555565541 1110 Q ss_pred hhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCC--ceE-- Q lcl|Aclame:pro 160 RIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDT--GIV-- 235 (945) Q Consensus 160 ~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG--~~~-- 235 (945) ....+.+.+.+ |. | ......+..+.+.+|.+|..+..+..|++ .+..++|..+.++.++.+ ... T Consensus 106 ---~~~~~~~~~~~-n~------~-~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ 173 (479) T protein:vir:79 106 ---NLTKLLNDLLG-EE------F-DDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAF 173 (479) T ss_pred ---HHHHHHHHHHh-cC------H-HHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEccceeEEEEeCCCCCceEEE Confidence 01112233322 32 1 12344566778899999998888888886 588899999988876542 211 Q ss_pred EEEEEe--eCCce---eeeecccceeeeeeccCCC------------------------------------CccCccccc Q lcl|Aclame:pro 236 VGYVQE--VDGAI---VAHFDKRDVVLFRQNLTPD------------------------------------VYMYGYSLP 274 (945) Q Consensus 236 ~~Yv~~--~dG~~---~~~~~a~DVIh~r~n~~~d------------------------------------~~~~GyGlS 274 (945) .+|+.. .++.. ...+....+.+++...... ......|.| T Consensus 174 ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~s 253 (479) T protein:vir:79 174 IRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVS 253 (479) T ss_pred EEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccEEEecCCCCCCc Confidence 111111 11211 1122233333322111000 000123556 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCC Q lcl|Aclame:pro 275 PIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGK 354 (945) Q Consensus 275 PI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G 354 (945) -+..+...++....+.....+.+.. .+.|-.++. +.. +...++....+ ..++.+.++++ T Consensus 254 d~~~v~~liDa~d~~~S~~~~~~~~-~~~~~~v~~--g~~-------~~~~~~~~~~~-----------~~~~~i~~~~~ 312 (479) T protein:vir:79 254 DLTFYKSLIDIYDNNISTLADNLDE-IQEVIYVLK--EYP-------GTSLQEFIDNI-----------RYYKSIKVDGG 312 (479) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHH-hhCceeeee--cCC-------ccccccchhhh-----------hhccceecCCC Confidence 6665555555444333333333332 234544442 111 11111111111 12233445555 Q ss_pred ceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 355 FTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLMATI 421 (945) Q Consensus 355 ~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~~I 421 (945) .++..++.+..+..+....+...+.|+..-++|..-.+. .++-|+ ++. ....+...++-.++.+ T Consensus 313 ~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~--~gn~Sg-~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li 389 (479) T protein:vir:79 313 GGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQN--TGDKSG-VALKFLYSLLDLKCSKTEKKFKKAIRELLWFV 389 (479) T ss_pred CcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccccccc--ccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 454444444455666778888899999999998654432 223222 111 2222333444444443 Q ss_pred HHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchh Q lcl|Aclame:pro 422 SKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAK 501 (945) Q Consensus 422 EqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~ 501 (945) ...++..-........+.+.|......+..+.++++.++ .|+++...+.++++. +++.+.-+ +....+ T Consensus 390 ~~~~~~~~~~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl--~g~iS~et~l~~l~~--v~d~~~E~--------~ri~~E 457 (479) T protein:vir:79 390 CEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPW--VEDVNDEL--------ERLKKQ 457 (479) T ss_pred HHHHhccCCCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCC--CCCHHHHH--------HHHHHH Confidence 333332211122234567888888888999999988777 488988877776543 22211100 000000 Q ss_pred hccCCCCcccccccCCCCCCCCCCCCCC Q lcl|Aclame:pro 502 AQQGAMPPQLAQAMADQPSQQGGGVDEN 529 (945) Q Consensus 502 ~~~~a~~~~~~~~~~d~~~~~~g~~dd~ 529 (945) ........ ....+..++..+++ T Consensus 458 ~~~~~~~~------~~~~~~~~~~~~e~ 479 (479) T protein:vir:79 458 EDTQKEYD------DLIPNNQDGVIDET 479 (479) T ss_pred HHHHHHHH------hccCcccCCCcCcC Confidence 00000000 00001111111111 No 185 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=97.30 E-value=0.0001 Score=42.47 Aligned_cols=432 Identities=15% Similarity=0.090 Sum_probs=164.2 Q ss_pred chhhhhccc--CCCCcchhhhhhhhhccceeeeeeeeeecce-eeecc-ccc-cccccccCCC--CCcccccCcccceec Q lcl|Aclame:pro 30 NVDSLSRGK--DYPGFKPLLTYRALAWNSTVVYSIIIFRKNQ-VLKKE-KII-VPYNHQEPPF--KFNLFEYSPESLMYL 102 (945) Q Consensus 30 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~-l~kK~-K~i-~p~~~r~pp~--~f~L~~~s~~sl~~l 102 (945) -...|-.|. -|| |.|.-| --||.+++ +..+. +..+. +.. .....+.+.. -...+.+... +..- T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~-----~~~~~e~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~-i~~~ 70 (483) T protein:vir:12 1 MAQALIKGGNILYP-SQPTQT---EIFDAIVR-----TNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPD-IVKE 70 (483) T ss_pred CccchhcCCceeec-Ccchhh---hhhhcccc-----cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccc Confidence 111122221 122 222222 11222211 11111 11000 000 0000000000 0011111100 0000 Q ss_pred cccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHH Q lcl|Aclame:pro 103 PSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVN 182 (945) Q Consensus 103 ps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~e 182 (945) +....... .....-....+..+-...+|+..++-+-+-|+.+- .+. . .....+..++. |. T Consensus 71 ~~~~~~~~-~~~~~~~~~ki~~n~~k~Ivd~~~~~l~G~p~~~~---~~d--~------~~~~~l~~~~~--n~------ 130 (483) T protein:vir:12 71 PKPVDATG-AVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK---HTD--D------EVVKRIDEVLG--NR------ 130 (483) T ss_pred cccccccc-cccccccccccccchHHHHHHHHhhhhcccCceec---cCC--h------HHHHHHHHHHh--cc------ Confidence 00000000 00000000112234455566666666655565541 110 0 01112333332 21 Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC--CceEE--EEEEeeCCceeeeecccceeee Q lcl|Aclame:pro 183 SWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED--TGIVV--GYVQEVDGAIVAHFDKRDVVLF 258 (945) Q Consensus 183 Fwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d--G~~~~--~Yv~~~dG~~~~~~~a~DVIh~ 258 (945) |. .....+..+.+.+|.+|..+..+.+|++ .+..++|..+.++.++. +.... +|+...+......+.+..+.++ T Consensus 131 ~~-~~~~~~~~~~~~~G~~y~~v~~d~d~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~y~~~~v~~~ 208 (483) T protein:vir:12 131 FD-DKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYY 208 (483) T ss_pred HH-HHHHHHHHHHhhCCeEEEEEEEcCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeecceEEEEEecCeEEEE Confidence 11 1234456778899999999989998886 58889999998887643 22221 1211111111222222222222 Q ss_pred eecc--------------------CCCCc-------cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEec Q lcl|Aclame:pro 259 RQNL--------------------TPDVY-------MYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIE 311 (945) Q Consensus 259 r~n~--------------------~~d~~-------~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k 311 (945) .... ++.+. ....|.|-++.....++....+.....+.+.. .+.|..++. T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~-~~~~~lv~~-- 285 (483) T protein:vir:12 209 VYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKD-SNELTYVLT-- 285 (483) T ss_pred EEeCCeeeecccccccccccccccCCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH-hcCceeeee-- Confidence 1000 00000 01135555655555554433333333333322 234544442 Q ss_pred cccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc Q lcl|Aclame:pro 312 PPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV 391 (945) Q Consensus 312 ~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lL 391 (945) +. +.+....++..+. ..+++.+++|.+...+.....+..+....+...+.|+..-++|..-. T Consensus 286 g~-----------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~ 347 (483) T protein:vir:12 286 NY-----------DDQELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS 347 (483) T ss_pred cC-----------CcccchhHHHhhh-------hccccccCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCc Confidence 11 1111112222111 11223344444444444445556677888888999999999986543 Q ss_pred ccccCCCcccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHH Q lcl|Aclame:pro 392 GILEGSNKATAEVM-------------ASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQ 458 (945) Q Consensus 392 G~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~ 458 (945) +... ++-| .++. ....+...++-.++.+...+. .......+.+.|+.....+..+.++++. T Consensus 348 ~~~~-~n~S-g~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~----~~~~~~~i~v~f~~~~p~~~~~~a~~~~ 421 (483) T protein:vir:12 348 DKFG-SAPS-GVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD----IKGEHKDVDISFNYNKVANTELQVQTAQ 421 (483) T ss_pred cccc-cCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCccceeeEEeCCCCCCCHHHHHHHHH Confidence 3211 2222 1221 112223333333333322221 1223346788898888889999999888 Q ss_pred HHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhH Q lcl|Aclame:pro 459 GQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQK 537 (945) Q Consensus 459 ~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k 537 (945) ++ .|+++...+.+.++. +++.+.-+- ........... .. ......+.+... .+.+....+++ T Consensus 422 kl--~GiiS~et~~~~~~~--v~d~~~E~~-----ri~~E~~~~~~-~~-~~~~~~~~d~~~------~~~~~~~~e~e 483 (483) T protein:vir:12 422 QS--MGIVSHETVLENHPF--VEDLQAELE-----RIEQEQMEYNK-QL-PNLDDGGADGAQ------QQERSNNKESE 483 (483) T ss_pred HH--hccCchHHHHHhCCC--CCCHHHHHH-----HHHHHHHHHHh-hc-ccccccccCCcc------cCCCCCcccCC Confidence 87 588998888777654 222111100 00110000000 00 000111111111 11111111111 No 186 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=97.28 E-value=0.00011 Score=42.34 Aligned_cols=391 Identities=13% Similarity=0.096 Sum_probs=144.8 Q ss_pred ccccc--ccccCCCCCcccccC--ccccee-----ccccCCcccchhhhhhHHhhh----------------c------- Q lcl|Aclame:pro 76 IIVPY--NHQEPPFKFNLFEYS--PESLMY-----LPSISDPDAFFLINLFRKYRF----------------N------- 123 (945) Q Consensus 76 ~i~p~--~~r~pp~~f~L~~~s--~~sl~~-----lps~s~p~~~~~~~v~~~~Am----------------~------- 123 (945) .-+|. -.++|+-...+++-. ++.... +..+.. .. -....+.+++. + T Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~~~~~~-~~-~rl~~l~~YY~G~~~~~~~~~~~~~~~~~~~~~~v 78 (501) T protein:vir:25 1 MTVPVDVIADAPAADVEFPEDSMSREQLGALVADMWRLHIS-ER-QWLDRIYEYTKGLRGRPEVPEGASDEVKELAKLSV 78 (501) T ss_pred CcccchhhhccCcccccCCcccCChHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHhcCCCchhccccCChhhhhhHhhhh Confidence 11111 113333222111111 000000 000000 00 00000011110 0 Q ss_pred cHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEE Q lcl|Aclame:pro 124 NDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAI 203 (945) Q Consensus 124 nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i 203 (945) +....-+|+..++.+--.+ |+ ..++. .+..+.+++.+ |.. ......+..+.+.+|.+|+ T Consensus 79 ~n~~~~ivd~~a~~l~~~g---f~-~~d~~---------~~~~l~~i~~~-N~~-------d~~~~~~~~~a~i~G~ay~ 137 (501) T protein:vir:25 79 KNVLSLVRDSFAQNLSVVG---YR-NALAK---------ENDPAWEMWQR-NRM-------DARQAEVHRPALTYGASYV 137 (501) T ss_pred cChHHHHHHHHHhhhcccc---ee-cCCcc---------chHHHHHHHHh-cCh-------hHHHHHHHHHHhhcCceEE Confidence 0111122222222111011 11 11111 12234444432 322 1234556778889999999 Q ss_pred EEEecCCCeEEEEEEcCCceeEEEEc-CCCc--eE--EEEEEeeC--Cc-ee-eeecccc-------------------- Q lcl|Aclame:pro 204 VKIRDEQGNLVAITPVDGTTIKPILS-EDTG--IV--VGYVQEVD--GA-IV-AHFDKRD-------------------- 254 (945) Q Consensus 204 ~iird~~G~pveL~pLdPs~Vtv~~d-~dG~--~~--~~Yv~~~d--G~-~~-~~~~a~D-------------------- 254 (945) .+.++..|. .+..++|..+.++.+ +..+ .. ++|..... +. .. ..+.+.. T Consensus 138 ~v~~de~~~--~i~~~sp~~~~~iy~D~~~~~~~~~ai~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 215 (501) T protein:vir:25 138 TVTPTDEGP--VFRTRSPRQILAVYADPSVDAWPQYALETWVAQKDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQAT 215 (501) T ss_pred EEecCCCCC--eEEEeccccEEEEEecCCCCcceeEEEEEEeeccccCcceeEEEecCeeEEEEecCceeeeeccccccc Confidence 998888884 466788998886653 2222 11 11111111 10 00 0011100 Q ss_pred --------------------------eeeeeeccCCCCccCcccccHHHHHH---HHHHHHHHHHHHHHHHHHhCCCCce Q lcl|Aclame:pro 255 --------------------------VVLFRQNLTPDVYMYGYSLPPIEILY---KVILSDIFIDKGNLDYYRKGGSIPE 305 (945) Q Consensus 255 --------------------------VIh~r~n~~~d~~~~GyGlSPI~aa~---~~I~~~~aaee~~a~~F~nnGa~Ps 305 (945) ++++. +... ..+.|.|.++... +.+.....-......+|. .+.. T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~---N~~~-~~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a---~p~~ 288 (501) T protein:vir:25 216 QQPVNVREVTDVIEHGATFEGKPVCPVVRFV---NGRD-ADDMIVGEVAPLILLQQAINSVNFDRLIVSRFGA---NPQR 288 (501) T ss_pred cccccccccccccccccccCCccceeeEecc---Cccc-cCccccchhhhhHHHHHHHHHHHHHHHHHHHhhc---cHHH Confidence 11111 1111 1235666554433 444433333333344332 1222 Q ss_pred EEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccC-CCceeeeccCChhhHH-HHHHHHHHHHHHHHH Q lcl|Aclame:pro 306 GILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG-GKFTWIDFKGKRRDMQ-FKELAEFVARKICAV 383 (945) Q Consensus 306 GILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~-~G~k~~pLs~sp~D~Q-flE~rk~~~eeIA~a 383 (945) .++ |. +.++... |+. ..+++++++ ++.++.++.. .+++ |++..+..+.+|++. T Consensus 289 ~i~----G~----------~~~~~~~----~~~-----~~~~i~~~~~~~~~~~q~~~--~~~~~~~~~l~~~i~~i~~~ 343 (501) T protein:vir:25 289 VIS----GW----------TGSKAEV----LKA-----SALRVWTFEDPEVKAQAFPP--ASVEPYNLILEEMLQHVAMV 343 (501) T ss_pred HHh----CC----------CCCccch----hhh-----cccceeccCCCCceEEEecc--cChHHHHHHHHHHHHHHHhh Confidence 221 10 1111111 211 112344444 4667665543 3333 888899999999999 Q ss_pred hcCChhhcccccCCCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHhh---cc------ccccceeEEEeechhhcCH Q lcl|Aclame:pro 384 YQVSPQDVGILEGSNKATAEVMASLTKAKGL----EPLMATISKGFDEVV---SE------FRNEKDIKLWFKEDDLEKE 450 (945) Q Consensus 384 FGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL----~Pll~~IEqeLn~kL---~~------~~~~~g~~f~fd~~~l~D~ 450 (945) -++|++.+|.... |- ..++. .+....| .-..+.+...+.+.+ .. ......+.+.|......+. T Consensus 344 s~~P~~~~~~~~~-N~-Sg~Al--~~~~~~l~~ka~~k~~~f~~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~ 419 (501) T protein:vir:25 344 AQISPAQVTGKMI-NV-SAEAL--AAAEANQQRKLAAKRESFGESWEQLLRLAAEMDDDPDTAADSGAEVLWRDTEARSF 419 (501) T ss_pred cCCChhhhccccC-Ch-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccceeeeEEecCCCCCCH Confidence 9999999985432 21 12222 1211112 222233333333211 10 0112346677877777889 Q ss_pred HHHHHHHHHHHhCCCcCHHHHHH-HHhCCCCCCccccccccccccccccchh--hccCCCCcccccccCCCC--CCCCCC Q lcl|Aclame:pro 451 RDWWNIIQGQLNTGFRSINEARM-EKGLEPVPWGDVPFSGLRNWKPEDEQAK--AQQGAMPPQLAQAMADQP--SQQGGG 525 (945) Q Consensus 451 kerae~~~~~v~~GimT~NEaRe-~lGlpPveGGD~~l~~~n~~~ped~~a~--~~~~a~~~~~~~~~~d~~--~~~~g~ 525 (945) .+.++++.++.+.|+ +.-.+.. +.|+.+-+- +. .... ...++.... ......+.+.....++.. +.+.++ T Consensus 420 ~~~ada~~kl~~~gi-s~et~~~~~~g~~~~~i-e~-~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (501) T protein:vir:25 420 GAVVDGITKLASAGI-PIEHLLSMVPGMTQQTI-QA-IKDS--LRGGEVKSLVDKLLSNEPAPVPPPPPQAAAQALNEGG 494 (501) T ss_pred HHHHHHHHHHHhcCC-CHHHHHHHcCCCCHHHH-HH-HHHH--HHHHhHHHHHHHhhccCcCCCCCCCCCCCcccccccc Confidence 999999999998885 4444333 346543110 00 0000 000000000 000000000101111100 111111 Q ss_pred CCCCccc Q lcl|Aclame:pro 526 VDENSSV 532 (945) Q Consensus 526 ~dd~e~~ 532 (945) .++.... T Consensus 495 ~~~~~g~ 501 (501) T protein:vir:25 495 VNGNGGA 501 (501) T ss_pred CCCCCCC Confidence 1111110 No 187 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=97.23 E-value=0.00012 Score=42.01 Aligned_cols=438 Identities=12% Similarity=0.026 Sum_probs=171.7 Q ss_pred CchhhhHhhhheeccccccCccccccch---hchhhhh------cccCCCCcchhhhhhhhhccceeeeeeeeeecceee Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIK---ANVDSLS------RGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVL 71 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~ 71 (945) ...+.|+=.-|=++||. +.-|.+-.. -+.+-+. +.+..|-++-+.-|-. . ++.++ T Consensus 11 ~~~~~~~~~~~~~~~n~--~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~-g-------------~~~il 74 (511) T protein:vir:78 11 TDLRGNINYLFNDEANV--VYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYE-G-------------KTKNL 74 (511) T ss_pred hhhhhhhhhhhhhhhCC--cccccchhhhhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhh-c-------------cCccc Confidence 22333444434444443 222322111 1111111 1122222222221110 0 12222 Q ss_pred eccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 72 KKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIED 151 (945) Q Consensus 72 kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrted 151 (945) +++... +. . .. ++.- +..+...-.|+..++-+-+-|+.+- ..+ T Consensus 75 ~~~~~~-~~-----~-------~~------------~~~k----------i~~n~~k~Iv~~~~~yl~g~p~~~~--~~d 117 (511) T protein:vir:78 75 VELTRR-KE-----E-------YM------------ADNR----------VAHDYASYISDFINGYFLGNPIQYQ--DDD 117 (511) T ss_pred cccCcc-cc-----c-------cc------------Ccce----------eecchHHHHHHHHhhhhcccCceee--cCc Confidence 222110 00 0 00 0000 0011222344455555555666542 111 Q ss_pred cccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC Q lcl|Aclame:pro 152 KHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED 231 (945) Q Consensus 152 g~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d 231 (945) ......+.+++.. |... .....+..+.+.+|.+|..+.++.+|++ .+..++|..+.++.++. T Consensus 118 ---------~~~~~~l~~~~~~-n~~~-------~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~ 179 (511) T protein:vir:78 118 ---------KDVLEAIEAFNDL-NDVE-------SHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNT 179 (511) T ss_pred ---------hHHHHHHHHHHhh-cChh-------HHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCC Confidence 1112345555543 3221 2334566778899999999888888876 68889999998887754 Q ss_pred C--ceEE--EEEEe--eCCc------eeeeecccceeeeeeccCC--------------------CC--ccCcccccHHH Q lcl|Aclame:pro 232 T--GIVV--GYVQE--VDGA------IVAHFDKRDVVLFRQNLTP--------------------DV--YMYGYSLPPIE 277 (945) Q Consensus 232 G--~~~~--~Yv~~--~dG~------~~~~~~a~DVIh~r~n~~~--------------------d~--~~~GyGlSPI~ 277 (945) . .... +|+.. .++. ....+.++.+.++...... -. .....|.|-++ T Consensus 180 ~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e 259 (511) T protein:vir:78 180 VERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYE 259 (511) T ss_pred CCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchh Confidence 3 2221 22211 1111 1123344444433221110 00 00123555555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHh-cC---cccCcccccCC Q lcl|Aclame:pro 278 ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIM-MG---DYTQVPILSGG 353 (945) Q Consensus 278 aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~-sG---~Nagkp~VL~~ 353 (945) .+...++....+..-..+.+... +.|-.++.- .. ..+.++.+..++..--.. .+ ...+. -.++ T Consensus 260 ~v~~liDa~~~~~S~~~~~~~~~-~~~~lv~~G--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 326 (511) T protein:vir:78 260 KVITLIDLYDNAESDTANYMSDL-NDAMLLIKG--NL--------NLDPVEVRKQKEANVLFLEPTVYVDAEGR--ETEG 326 (511) T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-hcchhheec--Cc--------cCCchhhcccccccceeccccceeccccc--cCCC Confidence 55555554333332222222221 233333321 10 111222221111100000 00 00011 1223 Q ss_pred CceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHHHH Q lcl|Aclame:pro 354 KFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLMAT 420 (945) Q Consensus 354 G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~~ 420 (945) +.+...++.......+....+...+.|+..-++|..-.+... ++-|. ++. ....+..+++-.++. T Consensus 327 ~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~-~n~Sg-~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l 404 (511) T protein:vir:78 327 SVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQSG-EAMKYKLFGLEQRTKTKEGLFTKGLRRRAKL 404 (511) T ss_pred CcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc-cccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 334444444445566678888899999999999976543322 22221 111 122233334433333 Q ss_pred HHHHHHHhhc--cccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccccccccccccccc Q lcl|Aclame:pro 421 ISKGFDEVVS--EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDE 498 (945) Q Consensus 421 IEqeLn~kL~--~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~ 498 (945) +...+...-. .......+++.|......+..+.++++.++. |+++...+.+++++ +++.+.-+- .+... T Consensus 405 i~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~--v~d~~~El~-----ri~~E 475 (511) T protein:vir:78 405 LETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSF--FQDPELEVK-----KIEED 475 (511) T ss_pred HHHHHHhcCCCccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCC--CCCHHHHHH-----HHHHH Confidence 3333322111 1112235788898888889999999988884 78988777766533 322111110 01111 Q ss_pred chhhccCCCCcccccccCCCCCCCCCCCC-CCccccchhH Q lcl|Aclame:pro 499 QAKAQQGAMPPQLAQAMADQPSQQGGGVD-ENSSVPSEQK 537 (945) Q Consensus 499 ~a~~~~~a~~~~~~~~~~d~~~~~~g~~d-d~e~~~se~k 537 (945) ..... +......+.+..+.+.++.+ +.+..+.+++ T Consensus 476 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:78 476 EKESI----KKAQKGIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred HHHHH----HHHhhccccCCCCCCCCCCCCCccCcccccC Confidence 00000 00000011111111111111 1111111111 No 188 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=97.23 E-value=0.00012 Score=42.01 Aligned_cols=438 Identities=12% Similarity=0.026 Sum_probs=171.7 Q ss_pred CchhhhHhhhheeccccccCccccccch---hchhhhh------cccCCCCcchhhhhhhhhccceeeeeeeeeecceee Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIK---ANVDSLS------RGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVL 71 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~ 71 (945) ...+.|+=.-|=++||. +.-|.+-.. -+.+-+. +.+..|-++-+.-|-. . ++.++ T Consensus 11 ~~~~~~~~~~~~~~~n~--~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~-g-------------~~~il 74 (511) T protein:vir:96 11 TDLRGNINYLFNDEANV--VYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYE-G-------------KTKNL 74 (511) T ss_pred hhhhhhhhhhhhhhhCC--cccccchhhhhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhh-c-------------cCccc Confidence 22333444434444443 222322111 1111111 1122222222221110 0 12222 Q ss_pred eccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 72 KKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIED 151 (945) Q Consensus 72 kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrted 151 (945) +++... +. . .. ++.- +..+...-.|+..++-+-+-|+.+- ..+ T Consensus 75 ~~~~~~-~~-----~-------~~------------~~~k----------i~~n~~k~Iv~~~~~yl~g~p~~~~--~~d 117 (511) T protein:vir:96 75 VELTRR-KE-----E-------YM------------ADNR----------VAHDYASYISDFINGYFLGNPIQYQ--DDD 117 (511) T ss_pred cccCcc-cc-----c-------cc------------Ccce----------eecchHHHHHHHHhhhhcccCceee--cCc Confidence 222110 00 0 00 0000 0011222344455555555666542 111 Q ss_pred cccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC Q lcl|Aclame:pro 152 KHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED 231 (945) Q Consensus 152 g~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d 231 (945) ......+.+++.. |... .....+..+.+.+|.+|..+.++.+|++ .+..++|..+.++.++. T Consensus 118 ---------~~~~~~l~~~~~~-n~~~-------~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~ 179 (511) T protein:vir:96 118 ---------KDVLEAIEAFNDL-NDVE-------SHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNT 179 (511) T ss_pred ---------hHHHHHHHHHHhh-cChh-------HHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCC Confidence 1112345555543 3221 2334566778899999999888888876 68889999998887754 Q ss_pred C--ceEE--EEEEe--eCCc------eeeeecccceeeeeeccCC--------------------CC--ccCcccccHHH Q lcl|Aclame:pro 232 T--GIVV--GYVQE--VDGA------IVAHFDKRDVVLFRQNLTP--------------------DV--YMYGYSLPPIE 277 (945) Q Consensus 232 G--~~~~--~Yv~~--~dG~------~~~~~~a~DVIh~r~n~~~--------------------d~--~~~GyGlSPI~ 277 (945) . .... +|+.. .++. ....+.++.+.++...... -. .....|.|-++ T Consensus 180 ~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e 259 (511) T protein:vir:96 180 VERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYE 259 (511) T ss_pred CCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchh Confidence 3 2221 22211 1111 1123344444433221110 00 00123555555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHh-cC---cccCcccccCC Q lcl|Aclame:pro 278 ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIM-MG---DYTQVPILSGG 353 (945) Q Consensus 278 aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~-sG---~Nagkp~VL~~ 353 (945) .+...++....+..-..+.+... +.|-.++.- .. ..+.++.+..++..--.. .+ ...+. -.++ T Consensus 260 ~v~~liDa~~~~~S~~~~~~~~~-~~~~lv~~G--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 326 (511) T protein:vir:96 260 KVITLIDLYDNAESDTANYMSDL-NDAMLLIKG--NL--------NLDPVEVRKQKEANVLFLEPTVYVDAEGR--ETEG 326 (511) T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-hcchhheec--Cc--------cCCchhhcccccccceeccccceeccccc--cCCC Confidence 55555554333332222222221 233333321 10 111222221111100000 00 00011 1223 Q ss_pred CceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHHHH Q lcl|Aclame:pro 354 KFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLMAT 420 (945) Q Consensus 354 G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~~ 420 (945) +.+...++.......+....+...+.|+..-++|..-.+... ++-|. ++. ....+..+++-.++. T Consensus 327 ~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~-~n~Sg-~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l 404 (511) T protein:vir:96 327 SVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQSG-EAMKYKLFGLEQRTKTKEGLFTKGLRRRAKL 404 (511) T ss_pred CcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc-cccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 334444444445566678888899999999999976543322 22221 111 122233334433333 Q ss_pred HHHHHHHhhc--cccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccccccccccccccc Q lcl|Aclame:pro 421 ISKGFDEVVS--EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDE 498 (945) Q Consensus 421 IEqeLn~kL~--~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~ 498 (945) +...+...-. .......+++.|......+..+.++++.++. |+++...+.+++++ +++.+.-+- .+... T Consensus 405 i~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~--v~d~~~El~-----ri~~E 475 (511) T protein:vir:96 405 LETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSF--FQDPELEVK-----KIEED 475 (511) T ss_pred HHHHHHhcCCCccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCC--CCCHHHHHH-----HHHHH Confidence 3333322111 1112235788898888889999999988884 78988777766533 322111110 01111 Q ss_pred chhhccCCCCcccccccCCCCCCCCCCCC-CCccccchhH Q lcl|Aclame:pro 499 QAKAQQGAMPPQLAQAMADQPSQQGGGVD-ENSSVPSEQK 537 (945) Q Consensus 499 ~a~~~~~a~~~~~~~~~~d~~~~~~g~~d-d~e~~~se~k 537 (945) ..... +......+.+..+.+.++.+ +.+..+.+++ T Consensus 476 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:96 476 EKESI----KKAQKGIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred HHHHH----HHHhhccccCCCCCCCCCCCCCccCcccccC Confidence 00000 00000011111111111111 1111111111 No 189 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=97.23 E-value=0.00012 Score=42.01 Aligned_cols=404 Identities=11% Similarity=0.041 Sum_probs=145.0 Q ss_pred cccccccccCCCCCcccccCccccee------ccccCCcccchhhhhhHHhhhccH-----------H---------HHH Q lcl|Aclame:pro 76 IIVPYNHQEPPFKFNLFEYSPESLMY------LPSISDPDAFFLINLFRKYRFNND-----------S---------KLI 129 (945) Q Consensus 76 ~i~p~~~r~pp~~f~L~~~s~~sl~~------lps~s~p~~~~~~~v~~~~Am~ns-----------a---------V~a 129 (945) .| ..|.. ++ .++.+.- ++.+.. .........+++.... . |-. T Consensus 1 ~~-----~~p~~--~l---~~~~~~~~~~~~l~~~~~~--~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~n 68 (479) T protein:vir:99 1 MI-----DLPDE--DL---SSEGLAKYLETKVFPKMNT--ECERLDDFEAWTKNGQEVPDLATRHKNKEREVLQQLSRKP 68 (479) T ss_pred Cc-----cCCcc--cC---ChhHHHHHHHHHHHHHHHH--HhHHHHHHHHHHhcCCcccccccccCChhHHHHHHHhhcC Confidence 00 01110 00 0000000 000000 0000000111111110 0 101 Q ss_pred HHHHHHHhhccC-ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEe- Q lcl|Aclame:pro 130 KVSEIPKKLTSK-ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIR- 207 (945) Q Consensus 130 CV~iIA~~IAsL-P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iir- 207 (945) -...|.+..+.. -+.-+... + ...+..+.+++.. |.. ......+..+.+.+|.+|.++.. T Consensus 69 ~~~~iVd~~~~~l~~~gf~~~-d---------~~~~~~~~~i~~~-N~~-------d~~~~~~~~~a~~~G~af~~v~~~ 130 (479) T protein:vir:99 69 WMGLMVNSFAQQLIVDGYRKT-G---------TNENAKGWDTWRL-NQM-------DKQQFWLNRAVLTFGYAFIKVTSG 130 (479) T ss_pred cHHHHHHHHHhhcccccccCC-C---------chhhHHHHHHHHh-cCh-------hHHHHHHHHHHhhcCceEEEEecC Confidence 112333333321 01101100 0 0012234444432 211 12344567788899998887764 Q ss_pred ----cCCCeEEEEEEcCCceeEEEEcCCC-ceEEEEEEeeCCc-eeeeecc-----------------------cc--ee Q lcl|Aclame:pro 208 ----DEQGNLVAITPVDGTTIKPILSEDT-GIVVGYVQEVDGA-IVAHFDK-----------------------RD--VV 256 (945) Q Consensus 208 ----d~~G~pveL~pLdPs~Vtv~~d~dG-~~~~~Yv~~~dG~-~~~~~~a-----------------------~D--VI 256 (945) +..|.+ .+..++|..+.++.++.. +....|....++. ....+.. .. ++ T Consensus 131 ~~~~d~~g~~-~i~~~~p~~~~~iydd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv 209 (479) T protein:vir:99 131 ISPLDGTTVA-RIKCIDPRDAFAIWEDPYWDEWPKYLLERQPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGHIPFV 209 (479) T ss_pred CCCcCCCCce-EEEEechhheEEEecCCcccceeeEEEeecCceeEEEEecceEEEEEecCCceeeccccccCCCCcceE Confidence 344554 577889999887764432 1111111111111 1111110 01 23 Q ss_pred eeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHH Q lcl|Aclame:pro 257 LFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQL 336 (945) Q Consensus 257 h~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~w 336 (945) ++..++.. ...|.|.++.....++....+.......... .+.|-.++. +..... ...... ..| T Consensus 210 ~f~n~~~~----~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~-~a~p~~~i~--G~~~~~----~~~~~~------~~~ 272 (479) T protein:vir:99 210 RYVNVMDL----RGVCYGDVEPLVTVAKAIDKTGLDILLVQHH-QSFQIRWAT--GLMLPE----GANADQ------EKM 272 (479) T ss_pred EeecCCCc----CcCCcchhHHHHHHHHHHHHHHHHHHHHHHH-hhchhhhhc--CCCccc----ccccch------hcc Confidence 33322221 1257776666555555543333322222221 123333332 110000 000000 011 Q ss_pred HHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 337 QAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEP 416 (945) Q Consensus 337 e~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~P 416 (945) ... ..+..+..+++.++.++..... ..+++..+..+.+|+..=++|++.+|....+ +.++.. +....+.- T Consensus 273 ~~~----~~~i~~~~~~~~~~~q~~~~~~-~~~~~~l~~~i~~i~~~t~~p~~~~g~~~n~---Sg~Al~--~~~~~l~~ 342 (479) T protein:vir:99 273 RFA----QESMLISQNEKASFGAIPAAPL-DGLLNAYKESLLEFLALAQLPPHIAGQIVNV---AADALA--AGTRQTMQ 342 (479) T ss_pred ccc----cccceeecCCCceEEEecccch-HHHHHHHHHHHHHHhccCCCCHHHcccccch---HHHHHH--HHHHHHHH Confidence 111 1122233466777766653222 3467777888889999999999999864321 222221 11111111 Q ss_pred H----HHHHHHHHHHhh------cc---ccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHH-hCCCCCC Q lcl|Aclame:pro 417 L----MATISKGFDEVV------SE---FRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEK-GLEPVPW 482 (945) Q Consensus 417 l----l~~IEqeLn~kL------~~---~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~l-GlpPveG 482 (945) . .+.+...|.+.+ .. ......+.+.|......+..+.++++.+++++|+++...+.+++ |+.+. T Consensus 343 ka~~~~~~f~~al~~~~~l~~~~~~~~~~~~~~~i~~~w~~~~~~s~~~~ad~~~kl~~ag~is~et~l~~l~gv~~~-- 420 (479) T protein:vir:99 343 KLFEKQATWKASHNQTMRLVNKIEGRTEEATDLDFTITWQDVTIQSLAQFADAWAKMVESLKIPAEGVWDMIPNLDQS-- 420 (479) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCHH-- Confidence 1 112222222111 01 01112355666666666788899999999999999888777766 55431 Q ss_pred ccccccc-c-ccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 483 GDVPFSG-L-RNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAGLEVLRNLFKSLDA 553 (945) Q Consensus 483 GD~~l~~-~-n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k~l~a 553 (945) +.-... . ......+... ......+++..+ +. ..++.++..++.+.+++-+. ++ +-.+ T Consensus 421 -~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~---~~----~~~~ 479 (479) T protein:vir:99 421 -TVNGWKEIYDREGDFGKYM-RKLQNGPDPAEQ---RG--GPNGATNMQQANNKTGEPAS---LN----KSGA 479 (479) T ss_pred -HHHHHHHHHHHHHHHHHHH-HHHhcccCcccc---cC--CCCCCCCCCCCCCCCcchhc---cC----CCCC Confidence 100000 0 0000000000 000000000000 00 00011111111111111000 00 0000 No 190 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=97.23 E-value=0.00012 Score=42.00 Aligned_cols=440 Identities=11% Similarity=0.016 Sum_probs=176.0 Q ss_pred CchhhhHhhhheeccccccCccccccchh---chhhhh------cccCCCCcchhhhhhhhhccceeeeeeeeeecceee Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIKA---NVDSLS------RGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVL 71 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~ 71 (945) ..+.-|+=.-|=+.||. ++-|++-... +.+-++ +.+.-|.++-+-.|-. . ++.++ T Consensus 11 ~~~~~~~~~~~~~~~n~--~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~-g-------------~~~il 74 (511) T protein:vir:93 11 TDLRGNINYLFNDEANV--VYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYE-G-------------KTKNL 74 (511) T ss_pred hhhhhhhhhhhhhhhCC--cccccchhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhc-c-------------cCccc Confidence 33444444434444442 2223221111 111111 0111122211111100 0 22332 Q ss_pred eccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 72 KKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIED 151 (945) Q Consensus 72 kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrted 151 (945) ++++.. +...+ ++.- +..+-....|+..++-+-+-|+.+- ..+ T Consensus 75 ~~~~~~-~~~~~------------------------~~~k----------i~~n~~k~Iv~~~~~yl~g~p~~~~--~~d 117 (511) T protein:vir:93 75 VELTRR-KEEYM------------------------ADNR----------VAHDYASYISDFINGYFLGNPIQYQ--DDD 117 (511) T ss_pred cccCcC-ccccc------------------------Ccce----------eecchHHHHHHHHhhhhcccCeeec--cCC Confidence 222210 00000 0000 0011222344455555555666541 111 Q ss_pred cccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC Q lcl|Aclame:pro 152 KHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED 231 (945) Q Consensus 152 g~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d 231 (945) ......+.+++.. |.. ......+..+.+.+|.+|..+.++.+|++ .+..++|..+.++.++. T Consensus 118 ---------~~~~~~l~~~~~~-n~~-------~~~~~~~~~~~~~~G~ay~~vy~de~~~~-~i~~~~p~~~~~vydd~ 179 (511) T protein:vir:93 118 ---------KDVLEVIEAFNDL-NDV-------ESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNT 179 (511) T ss_pred ---------hHHHHHHHHHHhh-cCH-------hHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCC Confidence 0111234444432 321 12345567788899999999999888876 58889999998887754 Q ss_pred C--ceEE--EEEEe--eCCc------eeeeecccceeeeeeccCC--------------------CC--ccCcccccHHH Q lcl|Aclame:pro 232 T--GIVV--GYVQE--VDGA------IVAHFDKRDVVLFRQNLTP--------------------DV--YMYGYSLPPIE 277 (945) Q Consensus 232 G--~~~~--~Yv~~--~dG~------~~~~~~a~DVIh~r~n~~~--------------------d~--~~~GyGlSPI~ 277 (945) . .... +|... .++. ....+.++.+.+++..... -. .....|.|-++ T Consensus 180 ~~~~~~~~vr~~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~e 259 (511) T protein:vir:93 180 IERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYE 259 (511) T ss_pred CCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccccccccccccccCCCccceEEecCCCCCCCchh Confidence 2 2221 22211 1111 0112333333333211100 00 00123555565 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHh-cC-cccCcccccCCCc Q lcl|Aclame:pro 278 ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIM-MG-DYTQVPILSGGKF 355 (945) Q Consensus 278 aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~-sG-~Nagkp~VL~~G~ 355 (945) .+...++....+..-.++.+... +.|-.++. +.. ..+.++....++...-.. .+ ...+...-.++|. T Consensus 260 ~v~~liDa~d~~~S~~~~~~~~~-~~~~lv~~--G~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (511) T protein:vir:93 260 KVITLIDLYDNAESDTANYMSDL-NDAMLLIK--GNL--------NLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSV 328 (511) T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-hCcceeee--cCc--------ccCchhhcccccccceecccccccccccccCCCCc Confidence 55555554443333333333322 23433432 111 111122221111100000 00 0001112234455 Q ss_pred eeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 356 TWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLMATIS 422 (945) Q Consensus 356 k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~~IE 422 (945) +...++....+..+....+...+.|+..-++|..-.+... ++-|. ++. ....+..+|+-.++.+. T Consensus 329 ~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~P~~~~~~~~-~n~Sg-~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~ 406 (511) T protein:vir:93 329 DGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQSG-EAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLE 406 (511) T ss_pred ceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 5555555555566678888899999999999976443222 22222 111 12233444444444444 Q ss_pred HHHHHhhcc--ccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccch Q lcl|Aclame:pro 423 KGFDEVVSE--FRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQA 500 (945) Q Consensus 423 qeLn~kL~~--~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a 500 (945) ..+...-.. ......+++.|+.....+..+.++++.++ .|+++...+++++++ +++.+.-+- .+..... T Consensus 407 ~~l~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~--v~d~~~E~~-----ri~~E~~ 477 (511) T protein:vir:93 407 TILKNTWSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSF--FQDPELEVK-----KIEEDEK 477 (511) T ss_pred HHHHhccCcccccccccceEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCC--CCCHHHHHH-----HHHHHHH Confidence 333322111 11223568888888888999999988887 578988777777643 222211110 0111000 Q ss_pred hhccCCCCcccccccCCCCCCCCCCCCC-CccccchhH Q lcl|Aclame:pro 501 KAQQGAMPPQLAQAMADQPSQQGGGVDE-NSSVPSEQK 537 (945) Q Consensus 501 ~~~~~a~~~~~~~~~~d~~~~~~g~~dd-~e~~~se~k 537 (945) .. ... .......+..+...++.++ .+..+.+++ T Consensus 478 ~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:93 478 ES-IKK---AQKGIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred HH-HHH---HhhhcccCCCCCCCCCCCCcccccccccC Confidence 00 000 0000111111111111111 111111111 No 191 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=97.21 E-value=0.00013 Score=41.90 Aligned_cols=427 Identities=11% Similarity=-0.001 Sum_probs=169.3 Q ss_pred ccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccce Q lcl|Aclame:pro 21 PSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLM 100 (945) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~ 100 (945) -..-++||.-+.+.-||+.= +- -..++++.+..-+.++..-+.. .+...-|. T Consensus 1 ~~~~~~~~~~i~~w~~~~~~-~~-----------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~w~ 52 (518) T protein:vir:78 1 MGVWSVMTRFIKGWLNGKPN-GS-----------------------EPELIPKYLPLVPDNQKEWSKD----SYLTSLWA 52 (518) T ss_pred CcchhhHHHHHHHhhcCCCC-cc-----------------------chhccHHHhhhcccchhhhhhh----hhhhhhcc Confidence 22233444444444444321 00 0001111111111111000000 00000011 Q ss_pred eccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCCh Q lcl|Aclame:pro 101 YLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSE 180 (945) Q Consensus 101 ~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~ 180 (945) ..++... ....+..+.-..+++.+|+-+..=|..|-=...+... .+.....+.+++.. T Consensus 53 ~~~~~~~----------~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~d-----~e~~~~~l~~il~~------- 110 (518) T protein:vir:78 53 QGYVPTV----------HDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSK-----DENLTKQLKEALRI------- 110 (518) T ss_pred cCCCCcc----------ccccccCChHHHHHHHHHHhhcCCCceEEecCccccC-----cHHHHHHHHHHHHh------- Confidence 1010000 0001112223345666666665544433111111000 01112233444432 Q ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCce----------------EEEE-EEe-- Q lcl|Aclame:pro 181 VNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGI----------------VVGY-VQE-- 241 (945) Q Consensus 181 ~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~----------------~~~Y-v~~-- 241 (945) -.|+..+.. .+...+..|..++-+..+ +|++ .+..++|..+.+... +|.. +|+. .+. T Consensus 111 n~f~~~~~~-~~e~a~a~G~~~~k~~~d-~~~~-~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~k~~~y~~lE~he~ 186 (518) T protein:vir:78 111 DNFDSKSVK-IVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREI 186 (518) T ss_pred ccHHHHHHH-HHHHhhccCceEEEEEEE-CCee-EEEEEcCCeeEEEee-cCcEEEEEEEEEeecCCcceeEEEEEeecc Confidence 134444433 445556666666655444 4664 577788887776542 2221 1100 000 Q ss_pred ---------------------eCCceeee-------------eccc------------ce--eeeeeccCCCC--ccCcc Q lcl|Aclame:pro 242 ---------------------VDGAIVAH-------------FDKR------------DV--VLFRQNLTPDV--YMYGY 271 (945) Q Consensus 242 ---------------------~dG~~~~~-------------~~a~------------DV--Ih~r~n~~~d~--~~~Gy 271 (945) .+++.... .... .. +.+..+..++. ...++ T Consensus 187 ~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~~~~~~~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~spl 266 (518) T protein:vir:78 187 KQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNL 266 (518) T ss_pred ccccceeecccceeEEEEEeeecCcccccccccccccccccccccccCccceeeccCCccceEEeeccccccccccCCCc Confidence 00000000 0000 01 12222222221 22357 Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc Q lcl|Aclame:pro 272 SLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS 351 (945) Q Consensus 272 GlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL 351 (945) |+|.+..+...+...........+-|.. |- +...+ ...........++. . ....+... .+.+.+ ...-. T Consensus 267 G~S~~~~~~~~id~lD~~~s~~~~e~~~-g~-~~i~v-~~~~l~~~~~~~~~-~--~~~~fd~~-~~~y~~----i~~~~ 335 (518) T protein:vir:78 267 GESDLSQCTNYLFAVDYFFTVYMREGEK-TK-TKIAA-SERMFRKKVNKSTD-K--EEWSMNVD-EDYFMQ----FKGTL 335 (518) T ss_pred CcchHhhhhHHHHHHHHHHHHHHHHHHh-CC-ceeee-chhHhccCCCCCCC-c--cccccCCC-CceEEE----ecCcC Confidence 9999999999888877777666666753 43 23222 11110000000000 0 00000000 000100 00001 Q ss_pred CCCc----eeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH------------HHHHHHHHHH Q lcl|Aclame:pro 352 GGKF----TWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM------------ASLTKAKGLE 415 (945) Q Consensus 352 ~~G~----k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq------------~~~F~~~tL~ 415 (945) ++|. .++.++....+.++.+..+...++|....|++|..+|..... .+..|-. ....++.+|. T Consensus 336 ~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~~~~~-~TATei~s~~~~~~~t~~~~~~~~e~al~ 414 (518) T protein:vir:78 336 DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIWSLQDATVRKIEKKKRLIQNVYE 414 (518) T ss_pred CCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhhcCccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1222 255666667788899999999999999999999999864322 2222111 1122222332 Q ss_pred HHHHHHHHHHHHhhcc-----ccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccccccc Q lcl|Aclame:pro 416 PLMATISKGFDEVVSE-----FRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGL 490 (945) Q Consensus 416 Pll~~IEqeLn~kL~~-----~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~ 490 (945) -++..+.+.+...... ......+.|+|+.....|.+++++...+++.+|+|++.++-+++... ..+.+..- T Consensus 415 ~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~~~~~~v~aGimS~e~~i~~~~~~-~~deea~~--- 490 (518) T protein:vir:78 415 QMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPK-WEDEEIQA--- 490 (518) T ss_pred HHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHhCCC-CCHHHHHH--- Confidence 2222222222211100 00112467888888889999999999999999999999865554321 22111100 Q ss_pred ccccccccchhhccCCC-CcccccccCCCCCCCCCC Q lcl|Aclame:pro 491 RNWKPEDEQAKAQQGAM-PPQLAQAMADQPSQQGGG 525 (945) Q Consensus 491 n~~~ped~~a~~~~~a~-~~~~~~~~~d~~~~~~g~ 525 (945) . .. .....+..+. +++.+-.+.++ .++ T Consensus 491 -e--~~-ri~~E~~~~~~~~p~~~~g~~~----~~g 518 (518) T protein:vir:78 491 -E--VK-RIYLENAIGEVPDPEAIGGMET----KGG 518 (518) T ss_pred -H--HH-HHHHHhcccCCCCCccccCCCC----CCC Confidence 0 00 0001111111 11111111111 111 No 192 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=97.21 E-value=0.00013 Score=41.87 Aligned_cols=399 Identities=13% Similarity=0.104 Sum_probs=146.9 Q ss_pred ccCcccce-ecc-ccCC--cc-----cc---------hhhhhh---HHhhhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 93 EYSPESLM-YLP-SISD--PD-----AF---------FLINLF---RKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIED 151 (945) Q Consensus 93 ~~s~~sl~-~lp-s~s~--p~-----~~---------~~~~v~---~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrted 151 (945) =.+...+. .+- .+.. +. .+ ....+- +...........+|+..++.+--.+|. ...+ T Consensus 1 ~~t~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~---~~~d 77 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGFR---ISED 77 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHhhhhhhcchHHHHHHHHHhhhccCcee---cCCC Confidence 00111110 000 0000 00 00 000000 000011122233334333333211221 1111 Q ss_pred cccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec------CCCeEEEEEEcCCceeE Q lcl|Aclame:pro 152 KHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD------EQGNLVAITPVDGTTIK 225 (945) Q Consensus 152 g~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird------~~G~pveL~pLdPs~Vt 225 (945) ......+.+++++ |.. ......+..+.+.+|.+|..+.++ ..|.+ .+.+++|..+. T Consensus 78 ---------~~~~~~l~~i~~~-N~~-------d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~-~i~~~~p~~~~ 139 (480) T protein:vir:78 78 ---------SEGLEELWNWWQA-NDL-------DEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIP-LIRVESPLYMY 139 (480) T ss_pred ---------chhHHHHHHHHHh-cCH-------HHHHHHHHHHHhhcCceEEEEecCccccCCCCCee-EEEEEcccceE Confidence 0112344455532 221 123455778889999999887653 35555 47889999998 Q ss_pred EEEcCC--CceEE--EEEEeeCC-c-e--eeeecccceeeeeec---------------------------cCCCCccCc Q lcl|Aclame:pro 226 PILSED--TGIVV--GYVQEVDG-A-I--VAHFDKRDVVLFRQN---------------------------LTPDVYMYG 270 (945) Q Consensus 226 v~~d~d--G~~~~--~Yv~~~dG-~-~--~~~~~a~DVIh~r~n---------------------------~~~d~~~~G 270 (945) ++.++. +.... .|+...++ + . ...+.++.+++++.. +++.. ... T Consensus 140 ~~~D~~~~~~~~~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~-~~~ 218 (480) T protein:vir:78 140 AELDPRNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRL-GNR 218 (480) T ss_pred EEEcCCCccceEEEEEEEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceEEeeccccc-CCc Confidence 888753 22221 11111111 1 0 112222222222111 01111 112 Q ss_pred ccccHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccC Q lcl|Aclame:pro 271 YSLPPIE----ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQ 346 (945) Q Consensus 271 yGlSPI~----aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nag 346 (945) +|.|.+. .+.+.+.....-......+|. .|--++. +.. .....++.. ...|.... + T Consensus 219 ~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a----~p~~~i~--G~~------~~~~~~~~~---~~~~~~~~-----~ 278 (480) T protein:vir:78 219 YGRSEISPELRKVTDAASRTLMNLQSASQILG----TPLRVIS--GVT------TDELTNDGE---NTTLDIYY-----G 278 (480) T ss_pred cCcccchhhHHHHHHHHHHHHHHHHHHHHhhc----chhhhhh--cCC------ccccccccc---cchhhhhh-----h Confidence 5665443 333333333332223333332 2322321 110 001111100 01122111 1 Q ss_pred ccccc-CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHH--HHHHHHHHHHHHH Q lcl|Aclame:pro 347 VPILS-GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTK--AKGLEPLMATISK 423 (945) Q Consensus 347 kp~VL-~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~--~~tL~Pll~~IEq 423 (945) ....+ +++.++.++.....+ .+++..+..+.+|+..=++|+..+|.... +.++.++....+. ..-..-..+.+.. T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~~~~~~p~~~~g~~~~-n~~Sg~Alk~~~~~l~~ka~~~~~~f~~ 356 (480) T protein:vir:78 279 RILTLASEAAKISEFKAAELR-NFAEEMEVFRKEAASITGLPPQYLSSSSE-NPASAEAIIATDSRIVKMAERKGRIFGG 356 (480) T ss_pred hhccCCCCCceEEecCccCHH-HHHHHHHHHHHHHhcccCCChHHhccccC-cchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11222 456777766643332 36777888899999999999999986433 2222233222111 1111112222222 Q ss_pred HHHHhh---c---cc---cccceeEEEeechhhcCHHHHHHHHHHHHhCC--CcCHHHHHHHHhCCCCCCcccccccccc Q lcl|Aclame:pro 424 GFDEVV---S---EF---RNEKDIKLWFKEDDLEKERDWWNIIQGQLNTG--FRSINEARMEKGLEPVPWGDVPFSGLRN 492 (945) Q Consensus 424 eLn~kL---~---~~---~~~~g~~f~fd~~~l~D~kerae~~~~~v~~G--imT~NEaRe~lGlpPveGGD~~l~~~n~ 492 (945) .|.+.+ . .. .....+.+.|......+..+.++.+.+++++| +++..-+++.+|+.+-+- .-+-... T Consensus 357 ~l~~~~~l~~~~~g~~~~~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~--~~~~~~~- 433 (480) T protein:vir:78 357 AWERAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQR--EQMRDWD- 433 (480) T ss_pred HHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcCCCCHhHH--HHHHHHH- Confidence 332211 1 11 11234566776666677788888888888765 677777788887754211 0000000 Q ss_pred ccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccc-hhHHHHHH Q lcl|Aclame:pro 493 WKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPS-EQKNAGLE 542 (945) Q Consensus 493 ~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~s-e~k~a~~~ 542 (945) ............+..++.++..+. ++.++...+++..++ ..+. ..+ T Consensus 434 -~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~ 480 (480) T protein:vir:78 434 -KQETEDMIDTLYSTTKAQADATPK--PTVTETKTETQTSPSGFNRT-KTR 480 (480) T ss_pred -HHHHHHHHHHhhccccccCCCCCC--CCCCCCCCccccccCCCCcc-cCC Confidence 000000000000000000000000 000000000100000 0000 000 No 193 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=97.17 E-value=0.00014 Score=41.64 Aligned_cols=413 Identities=10% Similarity=0.002 Sum_probs=160.0 Q ss_pred ccceeeeeeeeeecceeeecccccccc-ccccCCCC----CcccccCcccceeccccCCcccchhhhhhHHhhhccHHHH Q lcl|Aclame:pro 54 WNSTVVYSIIIFRKNQVLKKEKIIVPY-NHQEPPFK----FNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKL 128 (945) Q Consensus 54 ~~~~~~~~~~~~k~n~l~kK~K~i~p~-~~r~pp~~----f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~ 128 (945) -| ..--.+++|.+.+-+.+..+..-. .+...-.. ...+.+.- .+...+. ..+. .....+..+... T Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~yy~g~~-~i~~~~~-~~~~-------~~~~ki~~n~~~ 70 (453) T protein:vir:73 1 MN-LKPIKLMTYSRDEEITDKVVNDFMKKHQEEVERYEYLGNMYKGIM-EISSQKA-KDSW-------KPDNRLTNNFAK 70 (453) T ss_pred Cc-cccceeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-chhcCCC-CCcc-------CccceeecchHH Confidence 00 001112222222211111110000 00000000 00000000 0000000 0000 000011123333 Q ss_pred HHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec Q lcl|Aclame:pro 129 IKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD 208 (945) Q Consensus 129 aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird 208 (945) ..|+..+.-+-+-|+.+- .+. ......+..++.. |. | ......+..+.+.+|.+|..+..+ T Consensus 71 ~ivd~~~~~l~g~~~~~~---~~d--------~~~~~~l~~~~~~-n~------~-~~~~~~~~~~~~~~G~~~~~v~~d 131 (453) T protein:vir:73 71 YIVDTFVGYFNGIPIKKT---HDD--------KSVLEAMQLFDNL-ND------M-EDEESELAKIACVYGRAYELMYQN 131 (453) T ss_pred HHHHHhhhhhcccCceee---cCC--------hHHHHHHHHHHHh-cC------h-hHHHHHHHHHHHhcCeEEEEEEeC Confidence 444444444433444321 000 0111223333322 21 1 123445677889999999999899 Q ss_pred CCCeEEEEEEcCCceeEEEEcCCC-ceEE---EEEEeeCCce-eeeecccceeeeeecc----------CCC-------C Q lcl|Aclame:pro 209 EQGNLVAITPVDGTTIKPILSEDT-GIVV---GYVQEVDGAI-VAHFDKRDVVLFRQNL----------TPD-------V 266 (945) Q Consensus 209 ~~G~pveL~pLdPs~Vtv~~d~dG-~~~~---~Yv~~~dG~~-~~~~~a~DVIh~r~n~----------~~d-------~ 266 (945) .+|.+ .+..++|..+.++.++.. ..+. +|+...+|.. ...+....++++.... ++. . T Consensus 132 ~~~~~-~i~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~ 210 (453) T protein:vir:73 132 ESTES-EVIYCSPLNVFMVYDDSIKQKPLFAVYYGFDEEGNLSGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVEY 210 (453) T ss_pred CCCce-EEEEEcccceEEEEeCCCCceeEEEEEEEEecCceEEEEEEeCCeEEEEEecCCceEEccceeccCCceeEEEe Confidence 88887 577789999988776543 2221 2222233322 1222333333322110 000 0 Q ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccC Q lcl|Aclame:pro 267 YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQ 346 (945) Q Consensus 267 ~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nag 346 (945) .....|.|-+..+...++....+.....+..... +.|..++. + ..+.++....++..--....+...+ T Consensus 211 ~n~~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~-~~~~l~~~--g---------~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (453) T protein:vir:73 211 NFNEERQSIFEPVHSLINSYNKVTSEKANDVEYF-SDQYLVFL--G---------AEVDEEDAKNIKDNRLINFFDKNSN 278 (453) T ss_pred cCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh-ccceeeee--c---------CCCCchhhhcccccccccccccccc Confidence 0112455556555555544333333333322222 33544442 1 1223333333322100000111112 Q ss_pred cccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHH Q lcl|Aclame:pro 347 VPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKG 413 (945) Q Consensus 347 kp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~t 413 (945) .....+.+.++..++....+..+....+...+.|+..-++|..-- ...++-| .++. ....+... T Consensus 279 ~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~--~~~gn~S-g~Al~~~~~~l~~ka~~~~~~~~~~ 355 (453) T protein:vir:73 279 GQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAANISD--ENFGNSS-GVALAYKLQAMSNLALSFQRKFQSA 355 (453) T ss_pred cccccccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCcccCc--ccccCcc-HHHHHHHHHHHHHHHHHHHHHHHHH Confidence 222334455555555555566667788889999999999985322 2212222 1221 11223334 Q ss_pred HHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccc Q lcl|Aclame:pro 414 LEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNW 493 (945) Q Consensus 414 L~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~ 493 (945) ++..++.+...++..- .......+.+.|+.....+..+.++++.++. |+++..-+.+.+++ +++.+.-+-. T Consensus 356 l~~~~~li~~~~~~~~-~~~~~~~i~v~f~~~~p~~~~~~a~~~~k~~--giis~et~~~~~~~--~~d~~~E~~r---- 426 (453) T protein:vir:73 356 LNRRYSLWSSLSTNAS-NKDAWKDIEYTFTRNEPKDIKEQAETANILK--GITSEETALSVISV--IPDVQAEMEK---- 426 (453) T ss_pred HHHHHHHHHHHHhccC-CccccccceEEeCCCCCCCHHHHHHHHHHHh--ccCcHHHHHHhCCC--CCCHHHHHHH---- Confidence 4443333332222111 1112345688898888889999999988875 78887767666644 2221111000 Q ss_pred cccccchhhccCCCCcccccccCCCCCCCCCCC Q lcl|Aclame:pro 494 KPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGV 526 (945) Q Consensus 494 ~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~ 526 (945) +.. +....... +......++ .+..+.- T Consensus 427 -i~~---E~~~~~~~-~~~~~~~~~-~~~~~~~ 453 (453) T protein:vir:73 427 -IKK---KKLLQLSL-TRTSNLVRM-KQMRGNL 453 (453) T ss_pred -HHH---HHHHHHHH-HHhccCCcc-hhhhcCC Confidence 000 00000000 000000000 0000000 No 194 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=97.14 E-value=0.00016 Score=41.45 Aligned_cols=442 Identities=14% Similarity=0.138 Sum_probs=175.0 Q ss_pred ceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceec----cc-cCCcccchhhhhhHHhhhccHHHHHH Q lcl|Aclame:pro 56 STVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYL----PS-ISDPDAFFLINLFRKYRFNNDSKLIK 130 (945) Q Consensus 56 ~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~l----ps-~s~p~~~~~~~v~~~~Am~nsaV~aC 130 (945) -.-.+-..|.++.. ++-.+.+|.+. ..+.+. ......+. .+ ....+.+.+++-+++. +.+|.|..| T Consensus 1 m~~lfgf~i~~~~~--~~~~S~vpp~~-~~~~~~-----i~~g~~g~~v~~~g~~~~~n~~eLI~~YR~m-a~~pEVd~A 71 (564) T protein:vir:10 1 MSQLFGFLINEKEG--QKGQSPVPPND-EASVST-----VAGGYFGTYVDTSGGQNSRNEYELIRRYRDM-SLHPEVDSA 71 (564) T ss_pred Ccchhcceeeeecc--CCCCCcccCCc-CCChhh-----hhccccceeeecccccchhhHHHHHHHHHHH-hhccchhhH Confidence 11122233344322 11112232222 111110 11111110 10 0112345577777877 588999999 Q ss_pred HHHHHHhhcc-----CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEE Q lcl|Aclame:pro 131 VSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVK 205 (945) Q Consensus 131 V~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~i 205 (945) |+.|.+.+.- -|+.|- .++.+...+.++. .......+++--|-..++++. ++.++..|..|+.+ T Consensus 72 v~eIVneaIv~d~~~~pV~vd--L~~~~~s~siK~k-I~eEF~~Il~ll~F~~~~~e~--------fR~WYVDgRi~fHk 140 (564) T protein:vir:10 72 IDEIVNEFVVNDGDDKPVEVD--LQNLEIGSGVKKK-IRDEFNRILRMMNFNVNAHEI--------IRNWYVDGRSHYHK 140 (564) T ss_pred HHHhhcceeEecCCCceEEEE--ecccCcchHHHHH-HHHHHHHHHHHhccchhhhHH--------HhhhhhcceEEEEE Confidence 9999987542 122221 1111111121111 112222333322444455554 44557788889887 Q ss_pred EecCC---CeEEEEEEcCCceeEEEEcC------CCce--------------EEEEEEeeCC----------------ce Q lcl|Aclame:pro 206 IRDEQ---GNLVAITPVDGTTIKPILSE------DTGI--------------VVGYVQEVDG----------------AI 246 (945) Q Consensus 206 ird~~---G~pveL~pLdPs~Vtv~~d~------dG~~--------------~~~Yv~~~dG----------------~~ 246 (945) +.|.. ..+.+|++|+|..++.++.. .+.. ..+|.+.+.+ +. T Consensus 141 iid~~~pk~GI~eLr~lDPr~i~~vr~i~~~~~~~~~~v~k~~~~~~~y~~~~Eyy~Ynp~~~~g~~~~~~~~~~~~~~~ 220 (564) T protein:vir:10 141 VIDLDNPKKGILELRYIDSLKIRKVRQKLKDVDPNRKEIEKGTALQYDYGDFIEYYIYNPKGFAGNIPMVTGSMDWSNQE 220 (564) T ss_pred EeeCCChhhhhhhhhhhcccceeeeeeeccccccccceeeeeeeeeccccccccceeeccccccCccccccccccccccc Confidence 66522 24889999999988765521 1111 0123333221 11 Q ss_pred eeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccH Q lcl|Aclame:pro 247 VAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSR 326 (945) Q Consensus 247 ~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~ 326 (945) ...++.+.+.|.+..--+. ..++=+|-+..|...+....-++.. .-.++=..++-+-|+...-|.. |..-.+ T Consensus 221 ~ikI~~daI~y~hSGL~d~--~~~~i~gyLhkAIKp~NQLkmlEDA-lVIYRitRAPeRRvFYIDVGnL-----Pk~KAe 292 (564) T protein:vir:10 221 GIKIASDAIAQSTSGLMDL--NKKMTLSFLHKAIKSLNQLRMIEDS-LVIYRLSRAPERRIFYIDVGNL-----PKVKAE 292 (564) T ss_pred ceeechhhcceecccceeC--CCCceeccchhhhHhHHhhHHHHhh-HHHHhhhccccceEEEEecCCC-----CchhHH Confidence 2344455555543221111 1122234466666666554444442 2233334566666766654322 111111 Q ss_pred HHHHHHHHHHHHHh-----cC--cc--cCcccc----c-----CCCceeeeccC--ChhhHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 327 EQLESIQRQLQAIM-----MG--DY--TQVPIL----S-----GGKFTWIDFKG--KRRDMQFKELAEFVARKICAVYQV 386 (945) Q Consensus 327 Eq~erlKe~we~~~-----sG--~N--agkp~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~~~eeIA~aFGV 386 (945) +=+..+...+++.. .| .+ ....|+ | +.|.+++.+.- +.-+++ -.+|..+...++++| T Consensus 293 qYlr~iM~k~KNklVYDa~TGevrddrk~msMlEDyWLPRReGgrgTEItTLpGgqnLgem~---DV~YF~kKLY~aLnV 369 (564) T protein:vir:10 293 QYLRDVMSRYRNKLVYDGQTGEIRDDKKHMSMLEDFWLPRREGGRGTEITTLPGGQNLGELK---DVEYFKKKLYNSLNL 369 (564) T ss_pred HHHHHHHHhcCceEEEeccCceecccchhhhhHhhhcccccCCCcccceeeccccCCcchHH---HHHHHHHHHHHHhCC Confidence 11222222222211 12 11 111121 1 23566666543 333433 456788999999999 Q ss_pred ChhhcccccC-CCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeEEEeechhhcC Q lcl|Aclame:pro 387 SPQDVGILEG-SNK---ATAEVMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIKLWFKEDDLEK 449 (945) Q Consensus 387 PP~lLG~~e~-gT~---SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~f~fd~~~l~D 449 (945) |.+-++.-.. .+. +-+.-.-..| ...|.-+..++...+...|... ++ ...+.++|..+..-. T Consensus 370 P~SRl~~e~~~f~~Gr~~EItRDEiKF-~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ 448 (564) T protein:vir:10 370 PPSRLTDDNKAFNLGKSTEILRDELKF-TKFIGRLRKRFAQLFHDILKTQLILKGIITPEDWDDMEEHIQYDFLFDNHFN 448 (564) T ss_pred CcccccCCCceeecccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHH Confidence 9999975321 121 1122222233 3345556666666655444222 22 234566666554321 Q ss_pred -------HHHHHHHHHHHHh--CCC------------cCHHHHHHHH---------hC--CCC--CCccccccccccccc Q lcl|Aclame:pro 450 -------ERDWWNIIQGQLN--TGF------------RSINEARMEK---------GL--EPV--PWGDVPFSGLRNWKP 495 (945) Q Consensus 450 -------~kerae~~~~~v~--~Gi------------mT~NEaRe~l---------Gl--pPv--eGGD~~l~~~n~~~p 495 (945) +..|+.+++.+-. .-. +|-+|+-+.. |+ +|. +.||..-.+.....| T Consensus 449 ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~P~e~~~~~~~~~~~~~~~p 528 (564) T protein:vir:10 449 ELKEQEMQLQRVNLATQMDPFVGKYFSTEYIRRKILMQTENEFKEIDKQMKSDIESGLAIDPIQVNMLDDMEKQNQAFAP 528 (564) T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCchhhhcCCCccCCCCcCCc Confidence 3345555544311 112 2333332211 11 111 112211111111112 Q ss_pred cccchhhccCCCCccccc--ccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 496 EDEQAKAQQGAMPPQLAQ--AMADQPSQQGGGVDENS 530 (945) Q Consensus 496 ed~~a~~~~~a~~~~~~~--~~~d~~~~~~g~~dd~e 530 (945) ++....+...+.+...+. +...++++ .+..+.+. T Consensus 529 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~ 564 (564) T protein:vir:10 529 ELQAAQDDLAAEREIKKLNSAPKPPPSQ-QSKSQSNK 564 (564) T ss_pred chhhhccccccccChhhhccCCCCCCCC-CCcCcCCC Confidence 221111111111110000 00000000 00000000 No 195 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=97.09 E-value=0.00017 Score=41.20 Aligned_cols=433 Identities=11% Similarity=-0.000 Sum_probs=165.9 Q ss_pred ccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCC--CcccccCccc Q lcl|Aclame:pro 21 PSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFK--FNLFEYSPES 98 (945) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~--f~L~~~s~~s 98 (945) =++..-|| .|=.-+.|-+.++--+.+--.+++.. ...+..-.. ..++.+.+.. T Consensus 1 m~~~~~~k------------------------~~~~k~~~~~~~~~~~~i~~~~~i~~-~~~~~~~i~~~~~~y~g~~~~ 55 (522) T protein:vir:47 1 MSLFQKVK------------------------DFFSRGRYYMQTSNLNSILEHPKIAV-TQEEYDRIKRNLVYYQSKWDD 55 (522) T ss_pred CchHHHHH------------------------HHHHHHHHHhhcccchhccccCCCCC-CHHHHHHHHHHHHHhcCCccc Confidence 00000000 01000011111100000000000000 000000000 0001000000 Q ss_pred ceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccC Q lcl|Aclame:pro 99 LMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYF 178 (945) Q Consensus 99 l~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~m 178 (945) +.-+... .....+.......-..+++..|+-+..=|..+- -++ ......+.+++.. | T Consensus 56 ---~~~~~~~-----~~~~~~~~~slnl~~~i~~~~A~lv~~e~~~i~---v~d--------~~~~~~l~~~l~~-n--- 112 (522) T protein:vir:47 56 ---VQYKNTD-----GDIKSRPMNHLPIARTASKKIASLVYNEQATIT---TKN--------EILQKFLDDMLTN-D--- 112 (522) T ss_pred ---ccccccC-----cchhcccceecchHHHHHHHHhhhhcCCcceee---cCC--------hHHHHHHHHHHhh-c--- Confidence 0000000 011111122222333444555555544333221 000 1122234455532 2 Q ss_pred ChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceE-----E-----------EEE--- Q lcl|Aclame:pro 179 SEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIV-----V-----------GYV--- 239 (945) Q Consensus 179 T~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~-----~-----------~Yv--- 239 (945) .|+.. +...+...+..|..++-+..+. |. +.+..+++..+.|...+.++.. . .|. T Consensus 113 ---~f~~~-~~~~~e~a~a~G~~a~k~~~d~-~~-~~i~~v~ad~~~P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE 186 (522) T protein:vir:47 113 ---RFNKN-FERYLESCLALGGLAMRPYIDG-DK-VRVAFIQAPVFFPLESNTQDVSSAAILTKTIKSEGRKNVYYTLVE 186 (522) T ss_pred ---chHHH-HHHHHHHhhccCCEEEEEEEcC-Cc-eEEEEEcCCceEEEEEcCCceEEEEEEEEEEeecccceeEEEEEE Confidence 23333 3445555666777777666653 43 3566677776666433222110 0 011 Q ss_pred Eee-------------CCceee----eec----------------------ccc----------eeeeeec-cCCCCccC Q lcl|Aclame:pro 240 QEV-------------DGAIVA----HFD----------------------KRD----------VVLFRQN-LTPDVYMY 269 (945) Q Consensus 240 ~~~-------------dG~~~~----~~~----------------------a~D----------VIh~r~n-~~~d~~~~ 269 (945) +.. .++... .|. +.+ .+|++.+ ++.-.... T Consensus 187 ~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~~~~~Plf~y~~~~~~N~~~~~s 266 (522) T protein:vir:47 187 FHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLSELDKYKNLEPVTVFENLSRPLFTYLKTPGMNNKDINS 266 (522) T ss_pred EeeecccccccccccccCCceEEEEEEeecCCCcccCccccccccccccCCCCceEeCCCCcceEEEecCCcccccccCC Confidence 000 000000 000 000 1122111 01111123 Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccccccc-chh-ccHHHHHHHHHHHHHHhcCcccCc Q lcl|Aclame:pro 270 GYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDI-YPQ-LSREQLESIQRQLQAIMMGDYTQV 347 (945) Q Consensus 270 GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~-~~~-LS~Eq~erlKe~we~~~sG~Nagk 347 (945) ++|+|.+..+...+......-....+-|. .|... |+.........+.. ++. ......+.- +..+.+-+ T Consensus 267 plG~S~~~~~~~~id~lD~~~s~~~~e~~-~g~~~--i~v~~~~l~~~~~~~~g~~~~~~~fd~~----~~~f~~~~--- 336 (522) T protein:vir:47 267 PLGLSIFDNAKTTIDFINRSYDEFMWEVR-MGQRR--VIVPEHLTQRQYQRPDGTIDFRPRFDVE----QNVYMQIG--- 336 (522) T ss_pred CcCCchhhhhHHHHHHHHHHHHHHHHHHH-hccce--eecchHHhccCCCCCCcccccccccCcc----cceEeecC--- Confidence 57999999888888776655555555554 34321 22211110000000 000 000000000 11111100 Q ss_pred ccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHH Q lcl|Aclame:pro 348 PILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGL 414 (945) Q Consensus 348 p~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL 414 (945) .-.+++-+++.++....+-++.+..+...+.|+...|++|..+|....+. .++.+. .+..++.+| T Consensus 337 -~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~~~~~-kTAtEi~s~~~~~~~t~~~~~~~~~~al 414 (522) T protein:vir:47 337 -GSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFDGQGM-KTATEIVSENSDTYQMRSSIVALVEQSI 414 (522) T ss_pred -CCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCcccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 01123334666777778889999999999999999999999998765543 333333 223334444 Q ss_pred HHHHHHHHHHHHH-hhc--cccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccc Q lcl|Aclame:pro 415 EPLMATISKGFDE-VVS--EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLR 491 (945) Q Consensus 415 ~Pll~~IEqeLn~-kL~--~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n 491 (945) ..++..+.+..+. .+. .......+.+.|+.....|.++.++...+++.+|+|+.-+++... +++...+..- T Consensus 415 ~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~~~~~~~~~~v~aG~~s~e~~i~~~--~g~~eeea~~---- 488 (522) T protein:vir:47 415 KELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRHAELDYWAKMVAAGFSTKKRAIGKT--LNISGVEAEK---- 488 (522) T ss_pred HHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhc--CCCChHHHHH---- Confidence 4444444332221 111 111223466788888888999999999999999999999987653 2333222100 Q ss_pred cccccccchhhccCCCCcccccccCCCCCCCCCCCCCC Q lcl|Aclame:pro 492 NWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDEN 529 (945) Q Consensus 492 ~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~ 529 (945) .+ .. ....+..+.+.+ ....+....+...+..++ T Consensus 489 el--~r-i~~E~~~~~~~~-~~~~~~~~~~~~~~d~~~ 522 (522) T protein:vir:47 489 EL--NA-INSELLPMNDAE-LAIYGMHDQNEEKADDKG 522 (522) T ss_pred HH--HH-HHHhhccCCCCC-CCCCCCCCcccccCCCCC Confidence 00 00 000111111111 111110001111111111 No 196 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=97.00 E-value=0.00021 Score=40.70 Aligned_cols=428 Identities=15% Similarity=0.098 Sum_probs=164.5 Q ss_pred Cc----hhh------hHhhhheeccccccCccccc-----cchhchhhhhcc--cCCCCcchhhhhhhhhccceeeeeee Q lcl|Aclame:pro 1 MK----SLE------NIIKGFIVNANEQKRPSFSS-----NIKANVDSLSRG--KDYPGFKPLLTYRALAWNSTVVYSII 63 (945) Q Consensus 1 ~~----~~~------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (945) +. -.. |||+-|--.++++..--|-. ..+.-+..+-+. ..+|-.+-+..| |. T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~Y----------Y~-- 71 (492) T protein:vir:97 4 IQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEY----------YE-- 71 (492) T ss_pred HHHHHHHHHHHhcCCceeeccchhhhhHhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH----------hc-- Confidence 10 011 22222222222221111100 000000000000 001111111110 00 Q ss_pred eeecceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 64 IFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKEL 143 (945) Q Consensus 64 ~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~ 143 (945) -++.+++++...-.. .+..+ . .++. .+..+....+|+..++-+-+-|+ T Consensus 72 --g~~~i~~~~~~~~~~-~~~~~-----------------~--~~~~----------ri~~n~~k~Ivd~~~~yl~g~p~ 119 (492) T protein:vir:97 72 --QRPDIVKEPKPVDAT-GAVDP-----------------L--KPDD----------RMITNFHANLVDQKVSYIVGKPI 119 (492) T ss_pred --ccCcccccccccccc-ccccc-----------------c--cccc----------ccccchHHHHHHHHhhhhcccCc Confidence 012222222110000 00000 0 0000 01122334456666665555666 Q ss_pred EEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCce Q lcl|Aclame:pro 144 EIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTT 223 (945) Q Consensus 144 ~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~ 223 (945) .+- ..+. .....+..++. |.. . .....+..+.+.+|.+|..+..+..|++ .+..++|.. T Consensus 120 ~~~--~~d~---------~~~~~l~~~~~--n~~-~------~~~~~~~~~~~~~G~a~~~v~~d~dg~~-~~~~~~p~~ 178 (492) T protein:vir:97 120 AFK--HTDD---------EVVKRIDEVLG--NRF-D------DKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQ 178 (492) T ss_pred eec--cCch---------HHHHHHHHHHh--ccH-H------HHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccc Confidence 531 1110 01122333332 321 1 1234466778899999999888888886 588899999 Q ss_pred eEEEEcCC--CceEE--EEEEeeCCceeeeecccceeeeeecc--------------------CCCCc-------cCccc Q lcl|Aclame:pro 224 IKPILSED--TGIVV--GYVQEVDGAIVAHFDKRDVVLFRQNL--------------------TPDVY-------MYGYS 272 (945) Q Consensus 224 Vtv~~d~d--G~~~~--~Yv~~~dG~~~~~~~a~DVIh~r~n~--------------------~~d~~-------~~GyG 272 (945) +.++.++. +.... +|+...+......+....+.++.... ++.+. ....| T Consensus 179 ~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g 258 (492) T protein:vir:97 179 GIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLE 258 (492) T ss_pred eEEEEcCCCCCceEEEEEEEeeccceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecCCCCC Confidence 98887643 22221 12111111112222222222221100 00000 01235 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccC Q lcl|Aclame:pro 273 LPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG 352 (945) Q Consensus 273 lSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~ 352 (945) .|-++.....++....+.....+.+.. .+.|-.++. +. ..+....++..... .+++.++ T Consensus 259 ~sd~e~v~~liDa~d~~~S~~~~~~~~-~~~~~l~~~--g~-----------~~~~~~~~~~~~~~-------~~~~~~~ 317 (492) T protein:vir:97 259 ISDIFMYKTLIDAYNRRLSDLSNTFKD-SNELTYVLK--NY-----------DDQELPEFKRLLRY-------YGAIKVS 317 (492) T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHH-hccceeeee--cC-----------CcccchhHHHHHhh-------ccceecC Confidence 666666555555544433333333332 234444432 11 11111222221111 1233444 Q ss_pred CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHH-------------HHHHHHHHHHHHH Q lcl|Aclame:pro 353 GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMA-------------SLTKAKGLEPLMA 419 (945) Q Consensus 353 ~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~-------------~~F~~~tL~Pll~ 419 (945) ++.+...+.....+..+....+...+.|+..-++|..-.+... ++-| .++.. ...+...++..++ T Consensus 318 ~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~~-~n~S-g~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~ 395 (492) T protein:vir:97 318 DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPS-GVALEFLYTNLNLKADKLARKAKVAIQELLW 395 (492) T ss_pred CCCcceeEeccCCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4444444544455667778888899999999999865432211 2222 12211 1122223333333 Q ss_pred HHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccc Q lcl|Aclame:pro 420 TISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQ 499 (945) Q Consensus 420 ~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~ 499 (945) .+...++ .......+.+.|+.....+..+.++++.++ .|+++...+.+.++. +++.+.-+ ....... T Consensus 396 li~~~~~----~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl--~G~iS~et~l~~l~~--v~d~~~El-----eri~~E~ 462 (492) T protein:vir:97 396 FVFEHFD----IKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAEL-----ERIEQEQ 462 (492) T ss_pred HHHHHhc----CCcccceeeEEecCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCC--CCCHHHHH-----HHHHHHH Confidence 3322211 122334577888888888999999988887 588988777777654 22211100 0000000 Q ss_pred hhhccCCCCcccccccCCCCCCCCCCCCCCccccchhH Q lcl|Aclame:pro 500 AKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQK 537 (945) Q Consensus 500 a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k 537 (945) ....... + .....+.+ .+..++.+. .++++ T Consensus 463 ~~~~~~~-~-~~~~~~~~-----~~~~~~~~~-~~~~e 492 (492) T protein:vir:97 463 TEYNKQL-P-NLDDGGAD-----SAQQQERSN-NKESE 492 (492) T ss_pred HHHHHhh-h-ccccCCCC-----CCccccccc-ccccC Confidence 0000000 0 00000000 011111110 01111 No 197 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=97.00 E-value=0.00022 Score=40.67 Aligned_cols=398 Identities=13% Similarity=0.096 Sum_probs=149.1 Q ss_pred cccCcccce-ecc-ccCCcccchhhhhhHHhh---------------------hccHHHHHHHHHHHHhhccCceEEEEe Q lcl|Aclame:pro 92 FEYSPESLM-YLP-SISDPDAFFLINLFRKYR---------------------FNNDSKLIKVSEIPKKLTSKELEIYKH 148 (945) Q Consensus 92 ~~~s~~sl~-~lp-s~s~p~~~~~~~v~~~~A---------------------m~nsaV~aCV~iIA~~IAsLP~~VyRr 148 (945) +. +...+. .+- .+.. .......+.+++ .......-+|+..++.+--.+|. . T Consensus 1 ~~-t~~d~i~~L~~~~~~--~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~---~ 74 (480) T protein:vir:78 1 MT-TYHEHVERLQGLLAR--DLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGFR---I 74 (480) T ss_pred CC-CHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccchhcccccchhhhhhhhhcchHHHHHHHHHhhhccCcee---c Confidence 00 000100 000 0000 000000000000 11112223333333332111221 1 Q ss_pred ccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEec------CCCeEEEEEEcCCc Q lcl|Aclame:pro 149 IEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRD------EQGNLVAITPVDGT 222 (945) Q Consensus 149 tedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird------~~G~pveL~pLdPs 222 (945) .++ ......+.+++++ |.. ......+..+.+.+|.+|..+.++ ..|.+ .+.+++|. T Consensus 75 ~~d---------~~~~~~l~~i~~~-N~~-------~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~-~i~~~~p~ 136 (480) T protein:vir:78 75 SED---------SEGLEELWNWWQA-NDL-------DEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIP-LIRVESPL 136 (480) T ss_pred CCC---------chhHHHHHHHHHh-cCH-------HHHHHHHHHHHhhcCceEEEeecCccccCCCCCee-EEEEEccc Confidence 111 0112345555543 321 223455778889999999887653 45555 58889999 Q ss_pred eeEEEEcCCC--ceEE--EEEEeeCC-c---eeeeecccceeeeeecc--------------------------CCCCcc Q lcl|Aclame:pro 223 TIKPILSEDT--GIVV--GYVQEVDG-A---IVAHFDKRDVVLFRQNL--------------------------TPDVYM 268 (945) Q Consensus 223 ~Vtv~~d~dG--~~~~--~Yv~~~dG-~---~~~~~~a~DVIh~r~n~--------------------------~~d~~~ 268 (945) .+.++.++.. ...+ +|....++ + ....+.++.+++++... +..... T Consensus 137 ~~~~i~D~~~~~~~~~~i~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~ 216 (480) T protein:vir:78 137 YMYAELDPRNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLG 216 (480) T ss_pred ceEEEEcCCCccceEEEEEEEEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceEEeecccccC Confidence 9998887542 2221 12111111 1 11222233333322110 000011 Q ss_pred CcccccHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 269 YGYSLPPIE----ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDY 344 (945) Q Consensus 269 ~GyGlSPI~----aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~N 344 (945) ..+|.|.+. .+.+.+.....-......+|. .|--++. +.. ......+.. ...|... T Consensus 217 ~~~G~sdi~~~i~~l~Da~~~~~s~~~~~~~~~a----~p~~~i~--G~~------~~~~~~~~~---~~~~~~~----- 276 (480) T protein:vir:78 217 NRYGRSEISPELRKVTDAASRTLMNLQSASQILG----TPLRVIS--GVT------TDELTNDGE---NTTLDIY----- 276 (480) T ss_pred CccCccchhHHHHHHHHHHHHHHHHHHHHHHhhc----chhhhhh--CCC------ccccccccc---cchhhhh----- Confidence 124665443 333444433333333333332 2322221 110 000011100 0111111 Q ss_pred cCccccc-CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHH--HHHHHHHHHHH Q lcl|Aclame:pro 345 TQVPILS-GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTK--AKGLEPLMATI 421 (945) Q Consensus 345 agkp~VL-~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~--~~tL~Pll~~I 421 (945) .+....+ +++.++..+.....+ .+++..+..+.+|+..=++|++.+|.... +.++.++....+. ..-..-..+.+ T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~~~~~~p~~~fg~~~~-n~~Sg~Al~~~~~~l~~k~~~~~~~f 354 (480) T protein:vir:78 277 YGRILTLASEAAKISEFKAAELR-NFAEEMEVFRKEAASITGLPPQYLSSSSE-NPASAEAIIATDSRIVKMAERKGRIF 354 (480) T ss_pred hhhhccCCCCCceEEecCccCHH-HHHHHHHHHHHHHhcccCCCHHHhccccC-chhHHHHHHHHHHHHHHHHHHHHHHH Confidence 1222233 345777666554333 47788889999999999999999985332 2122222211111 11111112222 Q ss_pred HHHHHHhh------ccc---cccceeEEEeechhhcCHHHHHHHHHHHHhCC--CcCHHHHHHHHhCCCCCCcccccccc Q lcl|Aclame:pro 422 SKGFDEVV------SEF---RNEKDIKLWFKEDDLEKERDWWNIIQGQLNTG--FRSINEARMEKGLEPVPWGDVPFSGL 490 (945) Q Consensus 422 EqeLn~kL------~~~---~~~~g~~f~fd~~~l~D~kerae~~~~~v~~G--imT~NEaRe~lGlpPveGGD~~l~~~ 490 (945) ...|.+.+ ... .....+.+.|......+..+.++.+.+++.+| +++..-+++++|+.+-+-.. +-.. T Consensus 355 ~~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~e--~~~~ 432 (480) T protein:vir:78 355 GGAWERAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQ--MRDW 432 (480) T ss_pred HHHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhcCCCCHhHHHH--HHHH Confidence 22222111 111 11224567777667778888888888888765 67776778888875432100 0000 Q ss_pred ccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccch-hHHHHHHHHHHHHhh Q lcl|Aclame:pro 491 RNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSE-QKNAGLEVLRNLFKS 550 (945) Q Consensus 491 n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se-~k~a~~~~lr~~~k~ 550 (945) .- ........+..+... +++..++.+..++..++.+..++. ++.. .+ T Consensus 433 ~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 480 (480) T protein:vir:78 433 DK--QETEDMIDTLYSTTK--AQADATPKPTVTETKTETQTSPSGFNRTK---------TR 480 (480) T ss_pred HH--HHHHHHHHHhhcccc--CCCccccCCCCCCCCCccCCCcccCCCcC---------CC Confidence 00 000000000000000 000011111111111111111111 1100 00 No 198 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=96.96 E-value=0.00024 Score=40.46 Aligned_cols=423 Identities=13% Similarity=0.052 Sum_probs=177.0 Q ss_pred CchhhhH-------hhhheeccccccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeec Q lcl|Aclame:pro 1 MKSLENI-------IKGFIVNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKK 73 (945) Q Consensus 1 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK 73 (945) +.+++++ ++.+|-.-...++| .+.+.++| |.+- -..++++ T Consensus 31 ~~~~~~~~~~~~~~i~~~i~~h~~~~~~-----------rl~~l~~y--------Y~g~--------------~~~i~~~ 77 (502) T protein:vir:48 31 ADNLEELMVNNWELLKNFINHHKLRQAP-----------RIQELLDY--------ARGE--------------NHDVLKS 77 (502) T ss_pred ccchhhhccccHHHHHHHHHHHHHHHHH-----------HHHHHHHH--------hcCC--------------Ccccccc Confidence 5555543 55555432222222 22222222 1110 0111111 Q ss_pred cccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcc Q lcl|Aclame:pro 74 EKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKH 153 (945) Q Consensus 74 ~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ 153 (945) +.. .+. .. ++.- ...+.....|+..+.-+-+-|+.+--. ++. T Consensus 78 ~~~--------~~~------~~------------~~~k----------i~~n~~k~Ivd~~~~yl~g~p~~~~~~--d~~ 119 (502) T protein:vir:48 78 GRR--------KDN------EM------------ADKR----------AVHNYGRMISKFKTGYLAGNPIRVEYD--DNE 119 (502) T ss_pred ccc--------ccc------cc------------ccce----------eecchHHHHHHHHhhhhcccCeeEecC--Ccc Confidence 110 000 00 0000 001223335566666666677765311 110 Q ss_pred cccccchhhcccHHHHHHhcc---CccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcC Q lcl|Aclame:pro 154 VNYYLKRIRDARNILEFLERP---DPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSE 230 (945) Q Consensus 154 ee~~~r~~a~dhpL~~LL~rP---Np~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~ 230 (945) .++++..+|++. |.. ......+..+.+.+|.+|+.+.++..|.+ .+..++|..+.++.++ T Consensus 120 ---------~~~~~~~~l~~~~~~N~~-------~~~~~~~~~~~~~~G~a~~~v~~dedg~~-~i~~~~p~~~~~vydd 182 (502) T protein:vir:48 120 ---------DNSQNDDAIKRIGRINDI-------DTHNRNLIRDLSQTGRAYEVIYRSEYDET-RIKRLSPLETFVIYDN 182 (502) T ss_pred ---------chhHHHHHHHHHHhhcCH-------hHHHHHHHHHHhhcCeEEEEEEeCCCCce-EEEEEcccceEEEEcC Confidence 112333333322 321 23455677888999999999999988876 5788999999888765 Q ss_pred C--CceEE--EEEEe-eC-Cc--eeeeecccceeeeeec---------cCCCC-------ccCcccccHHHHHHHHHHHH Q lcl|Aclame:pro 231 D--TGIVV--GYVQE-VD-GA--IVAHFDKRDVVLFRQN---------LTPDV-------YMYGYSLPPIEILYKVILSD 286 (945) Q Consensus 231 d--G~~~~--~Yv~~-~d-G~--~~~~~~a~DVIh~r~n---------~~~d~-------~~~GyGlSPI~aa~~~I~~~ 286 (945) . +.... +|+.. .. ++ ....+..+.+.++... +++.+ .....|.|.++.+...++.. T Consensus 183 ~~~~~~~~~ir~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~ 262 (502) T protein:vir:48 183 SLEDNSIAAVRYYNRGTLQNAKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPITEFLNNADGIGDYETELYLIDLY 262 (502) T ss_pred CCCCceEEEEEEEEEeecCCcEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceEEecCCCCCCCchhhhHHHHHHH Confidence 3 22221 22211 11 11 1112233332222110 00000 01224666666655555554 Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhh Q lcl|Aclame:pro 287 IFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRD 366 (945) Q Consensus 287 ~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D 366 (945) ..+.....+.+.. .+.|-.++.- ... ...++....+++.. ..... ..+..-..+++.++..++....+ T Consensus 263 d~~~S~~~~~~~~-~~~~~lv~~g--~~~-------~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~d~~~l~~~~~~ 330 (502) T protein:vir:48 263 DSAESDTANHMSD-MADAILAIYG--DLA-------LPQGMQASDMKRTR-LMQLK-PPKSADGKEGTVKAEYLTKSYDV 330 (502) T ss_pred HHHHHHHHHHHHH-hcCceeeeec--Ccc-------cccccchhhhhhcc-eeecc-ccccccccccCcceeEeeecCCH Confidence 4444444444332 2344444321 110 00111122222111 00000 00000112334455445544444 Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhc-cc Q lcl|Aclame:pro 367 MQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLMATISKGFDEVVS-EF 432 (945) Q Consensus 367 ~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~~IEqeLn~kL~-~~ 432 (945) ..+....+...+.|+..-++|+.-.+... ++-|. ++. ....+..+++-.++.+...++..-. .. T Consensus 331 ~~~~~~~~~L~~~I~~~s~~p~~~~~~~~-~n~Sg-~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~ 408 (502) T protein:vir:48 331 SGAEAYKTRLNKDIHVFTNTPDMSDNHFS-GNASG-EALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKD 408 (502) T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCccccc-cCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc Confidence 55667788899999999999976554321 22222 221 1123334444444444333332211 11 Q ss_pred cccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccc Q lcl|Aclame:pro 433 RNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLA 512 (945) Q Consensus 433 ~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~ 512 (945) .....+.+.|......+..+.++++.++ .|+++...+.+.+++ +++.+.-+- .+............+.... T Consensus 409 ~d~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~l~~l~~--v~D~~~E~~-----ri~~E~~~~~~~~~~~~~~ 479 (502) T protein:vir:48 409 FDESRLKITFTPNLPKSLYEQVSILNDL--GGQVSQETALSLSGL--VENPTEELD-----KINEESSKIDFKGYPSYFY 479 (502) T ss_pred cccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCC--CCCHHHHHH-----HHHHHHHhhhhhccccccc Confidence 2234578889888888999999998887 478988777777654 222111110 0111011001111111110 Q ss_pred cccCC-CCCCCCCCCCCCccccc Q lcl|Aclame:pro 513 QAMAD-QPSQQGGGVDENSSVPS 534 (945) Q Consensus 513 ~~~~d-~~~~~~g~~dd~e~~~s 534 (945) ....+ ..+...+..++.+..++ T Consensus 480 ~~~~~~~d~~~e~~~~~~~~~~~ 502 (502) T protein:vir:48 480 DNVGKYTDEVKETHTDDFERVYE 502 (502) T ss_pred ccccccCCCccCCCCcCcCCCCC Confidence 00000 00111122222333222 No 199 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=96.90 E-value=0.00027 Score=40.16 Aligned_cols=450 Identities=13% Similarity=0.072 Sum_probs=178.0 Q ss_pred cceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcccceec--c-ccCCcccchhhhhhHHhhhccHHHHHHH Q lcl|Aclame:pro 55 NSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYL--P-SISDPDAFFLINLFRKYRFNNDSKLIKV 131 (945) Q Consensus 55 ~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~l--p-s~s~p~~~~~~~v~~~~Am~nsaV~aCV 131 (945) -..-.+-..|++..++ ++...+......+-..+.-. ....+. . .....+..-+++.+|..+ .+|.|..|| T Consensus 1 ~~~~lfg~~i~~~~~~---~~~~s~~~~~~~dg~~~~~~---~~~~g~~~~~e~~~~~~~eLI~~YR~ma-~~pEvd~Av 73 (537) T protein:vir:10 1 MAQQLFGFSLQRAKKV---PKGPSFVQKDSLDGSQPIVG---GGYFGYSVDFDGTIRNDHELITRYREMV-LNPECDSAV 73 (537) T ss_pred Cccccccceeeccccc---ccCCcccCCCcccccceeec---ccccccccccccccchHHHHHHHHHHHh-hccchhhHH Confidence 1112333445554332 22222221111111111100 000000 0 001122344566666655 789999999 Q ss_pred HHHHHhhcc-----CceEEEEeccCcccccccchh--hcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEE Q lcl|Aclame:pro 132 SEIPKKLTS-----KELEIYKHIEDKHVNYYLKRI--RDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIV 204 (945) Q Consensus 132 ~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~--a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~ 204 (945) +.|.+.+.- -|..|-= .+.....+.+.. ..-..+.+|| |-..++++. ++.++..|..|+. T Consensus 74 ~eIVneaiv~d~~~~pV~i~L--d~~~~s~~iK~kI~eEF~~Il~ll---~F~~~~~e~--------fR~WYVDgRi~fh 140 (537) T protein:vir:10 74 DDVVNETICGNFDDVPISIDL--HNLKQSEKIKKLIRSEFDEILRLL---DFDNRAYEI--------FRRWYVDGRLFFH 140 (537) T ss_pred HHhhcceeEecCCCceEEEEe--cccccchHHHHHHHHHHHHHHHHh---ccchhhhHH--------HhhheeeeEEEEE Confidence 999987752 2322211 111111111111 1122333444 344455554 4455788899988 Q ss_pred EEecCC---CeEEEEEEcCCceeEEEEc-----CCCce-------EE-----EEEEeeCC-----ceeeeecccceeeee Q lcl|Aclame:pro 205 KIRDEQ---GNLVAITPVDGTTIKPILS-----EDTGI-------VV-----GYVQEVDG-----AIVAHFDKRDVVLFR 259 (945) Q Consensus 205 iird~~---G~pveL~pLdPs~Vtv~~d-----~dG~~-------~~-----~Yv~~~dG-----~~~~~~~a~DVIh~r 259 (945) ++.|.. ..+.+|++|+|..++.++. +++.. .. +|.+.+.| +....++. +.|++. T Consensus 141 Kiid~k~pk~GI~ELr~lDPr~i~~vR~i~~~~~~~~~~~~~~~~v~~~~~eyf~ynp~g~~~~~~~~vkI~~-dAI~y~ 219 (537) T protein:vir:10 141 KVIDPKKPRQGLVELRYVDPRKIRKVTEYEAKRPEALRTQDLNQQLTQQSASYFLYNPKGLKNSTNQGMKIAP-DSIAYC 219 (537) T ss_pred EEEeCCCccccceeeeeeCCccceeeEeecccCCccceEEecceeeeecccceeeeccccccccCCCceeccH-hheeee Confidence 876533 3588999999999976543 11111 00 12222211 22233333 444443 Q ss_pred eccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHH Q lcl|Aclame:pro 260 QNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAI 339 (945) Q Consensus 260 ~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~ 339 (945) .----+ ...++.+|-+..|...+....-.+... -.++=..++-+-|+...-|.. |..-.++=...+...+++. T Consensus 220 hSGl~d-~n~~~i~syLhkAiKp~NQLkm~EDAl-VIYRitRAPeRRvFYIDVGnL-----Pk~KAeqYlr~iM~k~KNk 292 (537) T protein:vir:10 220 HSGIQD-LNKNMVLSHLHKAIKAVNQLRMIEDSL-VIYRLSRAPERRIFYIDVGNL-----PKNKAEQYLREVMGRYRNK 292 (537) T ss_pred ccccee-CCCCeeeeeehhhhHHHHhhHHHHhhH-HHHhhhccccceEEEEecCCC-----CchhHHHHHHHHHHhccce Confidence 211111 123456677888777776655554432 333444566667776654322 1111111222222222221 Q ss_pred h-----cC--ccc--Ccccc----c-----CCCceeeeccC--ChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCc Q lcl|Aclame:pro 340 M-----MG--DYT--QVPIL----S-----GGKFTWIDFKG--KRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNK 399 (945) Q Consensus 340 ~-----sG--~Na--gkp~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~ 399 (945) . .| .+. ...|+ | +.|.+.+.+.- +.-++ +-.+|..+...++++||.+-|+.-...+. T Consensus 293 lVYDa~TGev~ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnlgem---~DV~YF~kKLy~aLnVP~SRl~~e~~f~~ 369 (537) T protein:vir:10 293 LVYDANTGEIKDDKKFMSMLEDFWLPRREGGRGTEISTLPGGQNLGEL---EDVKYFQKKLYKALNVPSSRLETETTFNI 369 (537) T ss_pred EEEeccCceecccchhhhhhhhhcccccCCCcccceeeccccCCcChH---HHHHHHHHHHHHHhCCCccccCCCCcccc Confidence 1 22 111 11221 1 13566666543 33344 44567889999999999999965433232 Q ss_pred cc---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeEEEeechhhcC-------HHHHHHH Q lcl|Aclame:pro 400 AT---AEVMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIKLWFKEDDLEK-------ERDWWNI 456 (945) Q Consensus 400 SN---~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~f~fd~~~l~D-------~kerae~ 456 (945) .. +.-.-..| ...+.-+..++...+...|... ++ ...+.++|..+..-. +..|+.+ T Consensus 370 Gr~~EItRDEiKF-~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~ 448 (537) T protein:vir:10 370 GRAAEITRDEVKF-QKFIARLRKRFSELFVDLLKTQLILKGICSIEEWEEMKEHIQFDFIADNYFTELKEIEIRNERMNE 448 (537) T ss_pred cccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHH Confidence 22 22222233 3345556666666655444222 22 234566666554422 2345555 Q ss_pred HHHHHh--CCCcCHHHHHH-HHhCCCCC--Cccccc---cccc-cccccccchhhccCCCCcccccccCCCCCCCCCCCC Q lcl|Aclame:pro 457 IQGQLN--TGFRSINEARM-EKGLEPVP--WGDVPF---SGLR-NWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVD 527 (945) Q Consensus 457 ~~~~v~--~GimT~NEaRe-~lGlpPve--GGD~~l---~~~n-~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~d 527 (945) ++.+-. .-.++.+=+|+ .+.+.-.+ ..+... ..-. ...|++........+...+.++.+..+ ..++.. T Consensus 449 l~~~dpyvGky~s~dyi~k~ILr~tDeeI~~~~k~I~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 525 (537) T protein:vir:10 449 VAQMDPYVGKYFSANYIRTKVLKQTESEIKEIDKEIKQEIADGVIMDPQAMQAMEMGIGDEEPVPEGGEEP-QTDPNS-- 525 (537) T ss_pred HHHhhhhhhcccchHHHHHHHhccCHHHHHHHHHHHHHHhhCCCCCCcccccccccCCCCcccCCCCCCCc-ccCCcc-- Confidence 544321 11223333332 22221100 000000 0000 000111000000000000000000000 000000 Q ss_pred CCccccchhHHHH Q lcl|Aclame:pro 528 ENSSVPSEQKNAG 540 (945) Q Consensus 528 d~e~~~se~k~a~ 540 (945) ++++...+.... T Consensus 526 -~~~~~~~~~~~~ 537 (537) T protein:vir:10 526 -AVSPADQKRGEL 537 (537) T ss_pred -CCCCCCccCCCC Confidence 000000000000 No 200 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=96.90 E-value=0.00027 Score=40.15 Aligned_cols=410 Identities=13% Similarity=0.029 Sum_probs=152.5 Q ss_pred eee-eee--eecceeeeccccccccccccCCCCCcccccCccccee-------ccc----cCCcccchhhh---hh-HHh Q lcl|Aclame:pro 59 VYS-III--FRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMY-------LPS----ISDPDAFFLIN---LF-RKY 120 (945) Q Consensus 59 ~~~-~~~--~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~-------lps----~s~p~~~~~~~---v~-~~~ 120 (945) ||- +-+ -.+|.+|+-+....-...-. -.+.+........ ..+ +..+....... .. ... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ 76 (472) T protein:vir:93 1 MYPSQPTQTEIFDAIVRTNNKPETLEEMI----VRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDD 76 (472) T ss_pred CCCCCCcchhhhhceeeecCchhhHHHHH----HHHHHHHHHHHHHHHHHHHHhccccccccccchhhcccccccccccc Confidence 110 000 01111111111000000000 0000000000000 000 00000000000 00 000 Q ss_pred hhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 121 RFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDR 200 (945) Q Consensus 121 Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gn 200 (945) .+..+....+|+..+.-+-+-|+.+- ..+ ......+..++. |. |. .....+..+.+.+|. T Consensus 77 ri~~n~~~~ivd~~~~~l~g~~~~~~--~~d---------~~~~~~l~~~~~--n~------~~-~~~~~~~~~~~~~G~ 136 (472) T protein:vir:93 77 RMITNFHANLVDQKVSYIVGKPIAFK--HTD---------DEVVKRIDEVLG--NR------FD-DKLHSVLTGASNKGI 136 (472) T ss_pred ccccchHHHHHHHHhhhhcccCeeec--cCC---------hHHHHHHHHHHh--cc------HH-HHHHHHHHHHhhcCe Confidence 01123333444444444444444321 000 000112222222 21 11 223446677889999 Q ss_pred eEEEEEecCCCeEEEEEEcCCceeEEEEcCC--CceEE--EEEEeeCCceeeeecccceeeeeec--------------- Q lcl|Aclame:pro 201 GAIVKIRDEQGNLVAITPVDGTTIKPILSED--TGIVV--GYVQEVDGAIVAHFDKRDVVLFRQN--------------- 261 (945) Q Consensus 201 a~i~iird~~G~pveL~pLdPs~Vtv~~d~d--G~~~~--~Yv~~~dG~~~~~~~a~DVIh~r~n--------------- 261 (945) +|..+..+..|++ .+..++|..+.++.++. +.... +|+...+......+....+.++... T Consensus 137 ~~~~v~~d~d~~~-~i~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (472) T protein:vir:93 137 EWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENS 215 (472) T ss_pred EEEEEEECCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeecceeEEEEecCeEEEEEEecCeeeeccccccccc Confidence 9999888888886 58889999998887642 22221 1111111111111122222111100 Q ss_pred -----cCCCCc-------cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHH Q lcl|Aclame:pro 262 -----LTPDVY-------MYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQL 329 (945) Q Consensus 262 -----~~~d~~-------~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~ 329 (945) .++.+. ....|.|-+..+...++....+.....+.+.. .+.|..++. +. +.+.. T Consensus 216 ~~~~~~~~~~~vPvv~~~nn~~g~s~~e~v~~liDa~~~~~s~~~~~~~~-~~~~~~~~~--g~-----------~~~~~ 281 (472) T protein:vir:93 216 KTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKD-SNELTYVLT--NY-----------DDQEL 281 (472) T ss_pred ccccccCCCCCcceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH-hcCceeEee--cC-----------Ccccc Confidence 000000 01245666665555555444333333333332 234544443 11 11111 Q ss_pred HHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHH-- Q lcl|Aclame:pro 330 ESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMAS-- 407 (945) Q Consensus 330 erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~-- 407 (945) ..+...+. ..+++.++++.+...++....+..+....+...+.|+..-++|..-.+... ++-| .++... T Consensus 282 ~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~-~n~S-g~Al~~~~ 352 (472) T protein:vir:93 282 PEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPS-GVALEFLY 352 (472) T ss_pred hhhHHHHh-------hccccccCCCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cCch-HHHHHHHH Confidence 12222111 112233444444444544555677788889999999999999965543221 2222 222111 Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHh Q lcl|Aclame:pro 408 -----------LTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKG 476 (945) Q Consensus 408 -----------~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lG 476 (945) ..+...++-.++.+.. .+-.......+.+.|+.....+..+.++++.++ .|+++...+.+.++ T Consensus 353 ~~l~~ka~~~~~~~~~~l~~~~~li~~----~~~~~~~~~~i~v~f~~~~p~~~~~~~~~~~k~--~giis~et~l~~l~ 426 (472) T protein:vir:93 353 TNLNLKADKLARKAKVAIQELLWFVFE----HFDIKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHP 426 (472) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCcccceeeEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCC Confidence 1122222222222222 111122334577888888888889999888876 57898777777665 Q ss_pred CCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhH Q lcl|Aclame:pro 477 LEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQK 537 (945) Q Consensus 477 lpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k 537 (945) + +++.+.-+-. ..-+........+. ....+++... .++.+.. ++.+ T Consensus 427 ~--~~d~~~E~~r---i~~E~~~~~~~~~~----~~~~~~d~~~-----~~~~~~~-~~~e 472 (472) T protein:vir:93 427 F--VEDLQAELER---IEQEQMEYNKQLPN----LDDGGADGAQ-----QQERSNN-KESE 472 (472) T ss_pred C--CCCHHHHHHH---HHHHHHHHHHhccC----cCcccCCCCC-----CCCCCCc-ccCC Confidence 4 2221111100 00000001111100 0111111111 1111100 0111 No 201 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=96.87 E-value=0.00029 Score=40.01 Aligned_cols=451 Identities=13% Similarity=0.023 Sum_probs=168.3 Q ss_pred ccccCccc-cccchhchhhhhcccCCCCcchhhhhh-----hh-hccceeeeeeee-eecceeeeccccccccccccCCC Q lcl|Aclame:pro 16 NEQKRPSF-SSNIKANVDSLSRGKDYPGFKPLLTYR-----AL-AWNSTVVYSIII-FRKNQVLKKEKIIVPYNHQEPPF 87 (945) Q Consensus 16 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~-~k~n~l~kK~K~i~p~~~r~pp~ 87 (945) -||. -| -|....+.-++.+.+.+ ...|. -+ .|....++..|= ++..+ .++..... T Consensus 1 ~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~----~~r~~~~~------ 63 (501) T protein:vir:96 1 MEQT--LFTDSTGQERVLNLRFHRES-----RIRYRADNLEELMVNNWELLKNFINHHKLRQ----APRIQELL------ 63 (501) T ss_pred Ccee--eeeecccceeccccccchhH-----HhhhcccccccccCChHHHHHHHHHHHHHHH----HHHHHHHH------ Confidence 0000 00 00111111111111110 00000 00 011111111000 00000 00000000 Q ss_pred CCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHH Q lcl|Aclame:pro 88 KFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNI 167 (945) Q Consensus 88 ~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL 167 (945) ..+.+........+. .+. .......+..+....+|+..+.-+-+-|+++--.... ..+.+ T Consensus 64 --~yY~g~~~~i~~~~~--~~~-----~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~~~~-----------~~~~~ 123 (501) T protein:vir:96 64 --DYARGENHDVLKSGR--RKD-----NEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDND-----------DNSQN 123 (501) T ss_pred --HHhcCCCCcccCccc--cCc-----cccccceeecchHHHHHHHHhhhhcccCeeEeeCCcc-----------chhHH Confidence 001110000000000 000 0000111223445556666666665666665311110 11223 Q ss_pred HHHHhcc---CccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC--CceEE--EEEE Q lcl|Aclame:pro 168 LEFLERP---DPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED--TGIVV--GYVQ 240 (945) Q Consensus 168 ~~LL~rP---Np~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d--G~~~~--~Yv~ 240 (945) ..+|.+. |.. ......+..+.+.+|.+|..+.++.+|.+ .+..++|..+.++.++. +.... +|++ T Consensus 124 ~~~l~~~~~~n~~-------~~~~~~~~~~~~~~G~a~~~v~~dedg~~-~i~~~~p~~~~~v~d~~~~~~~~~~v~~~~ 195 (501) T protein:vir:96 124 DDAIKRIGRINDL-------DSLNRTLIRDLSQTGRAYEVIYRSEYDET-RIKRLSPLETFVIYDNSLEDNSIAAVRYYN 195 (501) T ss_pred HHHHHHHHHhcCH-------HHHHHHHHHHHhhcCeEEEEEEEcCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEE Confidence 3333221 322 12455677888999999999989988876 57889999999888754 32221 1221 Q ss_pred eeC--Cce--eeeecccceeeeee---------ccCCC-------CccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 241 EVD--GAI--VAHFDKRDVVLFRQ---------NLTPD-------VYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKG 300 (945) Q Consensus 241 ~~d--G~~--~~~~~a~DVIh~r~---------n~~~d-------~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nn 300 (945) ... +.. ...+.++.+.++.. .+++. ......|.|.+..+...++....+.....+.+... T Consensus 196 ~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~ 275 (501) T protein:vir:96 196 RGTLQSAKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPITEYLNNIDGIGDYETELYLIDLYDSAESDTANHMSDM 275 (501) T ss_pred eecCCCcEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceEEecCCccCCCchhhhHHHHHHHHHHHHHHHHHHHHh Confidence 111 111 11222222222211 00000 00112466666655555554443333333333322 Q ss_pred CCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKI 380 (945) Q Consensus 301 Ga~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeI 380 (945) +.|-.++. +.... -..+....++.... ... ...+.....+.+.+...++....+..+....+...+.| T Consensus 276 -~~~~l~i~--G~~~~-------~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I 343 (501) T protein:vir:96 276 -ADAILAIY--GDLAL-------PKGMQASDMKRTRL-MQL-KPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDI 343 (501) T ss_pred -cCceeeee--ccccc-------CcccchhhhhhcCe-eee-cccccccccccCcceeeEeccCCHHHHHHHHHHHHHHH Confidence 23444432 11100 01111112211100 000 01111111233445444554445556677888889999 Q ss_pred HHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhc-cccccceeEEEeechh Q lcl|Aclame:pro 381 CAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLMATISKGFDEVVS-EFRNEKDIKLWFKEDD 446 (945) Q Consensus 381 A~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~~IEqeLn~kL~-~~~~~~g~~f~fd~~~ 446 (945) +..-++|..-.+... ++-|. ++. ....+..+++-.++.+...++..-. .......+.+.|.... T Consensus 344 ~~~s~~p~~~~~~~~-~n~Sg-~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~ 421 (501) T protein:vir:96 344 HIFTNTPDMSDTNFS-GNTSG-EALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNL 421 (501) T ss_pred HHHhCCcccCccccc-ccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeCCCC Confidence 999999976654322 22222 111 1122333343333333333322111 1112234778898888 Q ss_pred hcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCccc-ccccCCCCCCCCCC Q lcl|Aclame:pro 447 LEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQL-AQAMADQPSQQGGG 525 (945) Q Consensus 447 l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~-~~~~~d~~~~~~g~ 525 (945) ..+..+.++++.++. |+++...+.+++++ +++.+.-+- ...............++. +..+........++ T Consensus 422 p~n~~e~ad~~~kl~--g~iS~et~~~~l~~--v~D~~~E~~-----ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 492 (501) T protein:vir:96 422 PKSLNEQVSILTGLG--GQVSQETALSLSGL--VESPNEELD-----KINKEMSEIDFKGYSNDFNEHVGKYTDEVKETH 492 (501) T ss_pred CcCHHHHHHHHHHHh--ccCchHHHHHhCCC--CCCHHHHHH-----HHHHHHHHhhccccccchhhcccccCCcCCCCC Confidence 889999999988884 78988777776543 222111110 010000000000000000 00011111111122 Q ss_pred CCCCccccc Q lcl|Aclame:pro 526 VDENSSVPS 534 (945) Q Consensus 526 ~dd~e~~~s 534 (945) +++++...+ T Consensus 493 ~d~~e~~~~ 501 (501) T protein:vir:96 493 TDDFEREYE 501 (501) T ss_pred CCccccccC Confidence 222222111 No 202 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=96.83 E-value=0.00031 Score=39.79 Aligned_cols=413 Identities=10% Similarity=0.006 Sum_probs=149.7 Q ss_pred cccccccccCCCCCcccccCcccceec-cccCCc-ccch-hhh-------hh---------HHhhhccHHHHHHHHHHHH Q lcl|Aclame:pro 76 IIVPYNHQEPPFKFNLFEYSPESLMYL-PSISDP-DAFF-LIN-------LF---------RKYRFNNDSKLIKVSEIPK 136 (945) Q Consensus 76 ~i~p~~~r~pp~~f~L~~~s~~sl~~l-ps~s~p-~~~~-~~~-------v~---------~~~Am~nsaV~aCV~iIA~ 136 (945) ..+...++... ++.+..++-+..+ ..+... .+.. +.. +. ....+..+-....|+..+. T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~ki~~n~~~~Iv~~~~~ 77 (499) T protein:vir:10 1 MAVVIDKDLLD---DVNEPNIEAINYAIRELQNRKKRLDKLSDYYNGKQEIEKHEFDNATVEAANVMVNHAKYITDMNVG 77 (499) T ss_pred CccchhhhHHh---hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcCCcCcCCCCcceeecchHHHHHHHHhh Confidence 11111111111 1111111100000 000000 0000 000 00 0000111122223333333 Q ss_pred hhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeE--- Q lcl|Aclame:pro 137 KLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNL--- 213 (945) Q Consensus 137 ~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~p--- 213 (945) -+-+-|+.+- ..+ ......+.+++.+ |. | ......+..+.+.+|.+|.++..+..|.+ T Consensus 78 ~l~g~p~~~~--~~~---------~~~~~~l~~~~~~-n~------~-~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~ 138 (499) T protein:vir:10 78 FMTGNPVKYV--AEK---------GKNIDDILEVFNQ-ID------I-HKHDIELEKDLSVFGYGYELLYLKKTDPISVR 138 (499) T ss_pred hhcccCceee--cCC---------hhHHHHHHHHHhh-cC------H-hHHHHHHHHHHHhcCceEEEEEeccccccccc Confidence 3323333221 000 0011223333322 21 1 12344566778899999998888887753 Q ss_pred -------------EEEEEcCCceeEEEEcCCCce----EEEEEEee--CCce----eeeecccceeeeeecc-------- Q lcl|Aclame:pro 214 -------------VAITPVDGTTIKPILSEDTGI----VVGYVQEV--DGAI----VAHFDKRDVVLFRQNL-------- 262 (945) Q Consensus 214 -------------veL~pLdPs~Vtv~~d~dG~~----~~~Yv~~~--dG~~----~~~~~a~DVIh~r~n~-------- 262 (945) ..+..++|..+.++.++.+.. .++|+... ++.. ...+.++.+.++.... T Consensus 139 ~~~~~~~~~~~~~~~~~~v~p~~~~~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~ 218 (499) T protein:vir:10 139 DELGNEKLTPNTELKIEVIDPRATVVVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSAND 218 (499) T ss_pred ccccccccccccceEEEEEcccceEEEecCCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcc Confidence 346778888887776554321 11222211 1111 1123333333321110 Q ss_pred -------CCCCc-------cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHH Q lcl|Aclame:pro 263 -------TPDVY-------MYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQ 328 (945) Q Consensus 263 -------~~d~~-------~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq 328 (945) ++.+. ....|.|-+..+...++....+.....+.+.. .+.|-.++. +.... -..+. T Consensus 219 ~~~~~~~~~~g~vPvv~~~n~~~~~~d~e~v~~liD~~~~~~S~~~~~~~~-~~~~~lv~~--G~~~~-------~~~~~ 288 (499) T protein:vir:10 219 PIVYDGENLFGAVPIIEFRNNEERQGDFEQLISLIDAYNLLQTDRISDKEA-FVDALLVTF--GFGLG-------DDKDD 288 (499) T ss_pred eecccccCCCCccceEEecCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHH-hcCceeeee--cCccc-------cccch Confidence 00000 01134444554444444433333323333322 234544443 11100 01111 Q ss_pred HHHHHHHHHHHhcCcccCcccc--cCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHH--- Q lcl|Aclame:pro 329 LESIQRQLQAIMMGDYTQVPIL--SGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAE--- 403 (945) Q Consensus 329 ~erlKe~we~~~sG~Nagkp~V--L~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~E--- 403 (945) ...++ .+.... .++|.++..+........+....+...+.|...-++|..--+.. .++-|... T Consensus 289 ~~~~~-----------~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~gn~Sg~Al~~ 356 (499) T protein:vir:10 289 IQRLK-----------RGAIEAPPREEGADIEWLTKSFDETQVNLLSQSIENDIHKISYVPNMNDEKF-MGNVSGEAMKF 356 (499) T ss_pred hhhhh-----------hcceeccCCCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCchhh-cccchHHHHHH Confidence 11111 011111 24555555555544555667778888899999888885322111 12222211 Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHH Q lcl|Aclame:pro 404 ---------VMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARME 474 (945) Q Consensus 404 ---------qq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~ 474 (945) +.....+..++.-.++.+...++..- .......+.+.|+.....+..+.++.+.++ .|+++..-++++ T Consensus 357 ~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~-~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~ 433 (499) T protein:vir:10 357 KLFGLENLLSIKQRYFFDGLRRRLKLIQTIVNIKG-ANDDASGCKISLVANIPSNLSDVVNNVKNA--DGIIPRKYTYSW 433 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CccccccceEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHh Confidence 11122233333333333333222110 111223568888888888999999999887 588998888877 Q ss_pred HhCCCCCCccccccccccccccccchh----hc-cCCCCcccccccCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHh Q lcl|Aclame:pro 475 KGLEPVPWGDVPFSGLRNWKPEDEQAK----AQ-QGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAGLEVLRNLFK 549 (945) Q Consensus 475 lGlpPveGGD~~l~~~n~~~ped~~a~----~~-~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k 549 (945) ++. +++.+.-+-.. .-+..... .. .+..++.....+.+..++++++.... ...+.+++. T Consensus 434 l~~--v~d~~~E~~ri---~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------- 497 (499) T protein:vir:10 434 LPD--VDNPQDVIDEM---NQQDAETIKKNQEALRGQDPDRLELEDKQDDSSENDKEAGS---NHNQSHRTR-------- 497 (499) T ss_pred CCC--CCCHHHHHHHH---HHHHHHHHHHHHhhhccCCCCCCCCCCCCcccCCCCCCCcc---ccccCCCCC-------- Confidence 654 32222111000 00000000 00 00001110001110111101000000 001111111 Q ss_pred hh Q lcl|Aclame:pro 550 SL 551 (945) Q Consensus 550 ~l 551 (945) ++ T Consensus 498 ~~ 499 (499) T protein:vir:10 498 AV 499 (499) T ss_pred CC Confidence 11 No 203 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=96.82 E-value=0.00032 Score=39.78 Aligned_cols=418 Identities=14% Similarity=0.073 Sum_probs=157.6 Q ss_pred CchhhhHhhhheeccccccCccccccchhchhhhhcccCCCCcchhhhhhhhh-cccee--------eeeeeeeecceee Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALA-WNSTV--------VYSIIIFRKNQVL 71 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~k~n~l~ 71 (945) |+++ .||-=-..++.-++++.-. .- ..+-+-.+.+. |+.-+ .|. -++.++ T Consensus 1 ~~~~--------------~~~~~~~~~~e~~~~~~~~-~~--~~~~~i~~~i~~~~~~~~~~~~~~~yY~----g~~~i~ 59 (478) T protein:vir:10 1 MISI--------------NWPWDKPYHEQVVEQIKPK-YE--TQEEMILRLVREHKENIDNITMGERYYN----HHPDIL 59 (478) T ss_pred Cccc--------------cCCCCchhHHHHHHHHhhc-cC--CcHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCchh Confidence 4443 1222222222222222100 00 00001111100 00000 000 001111 Q ss_pred eccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccC Q lcl|Aclame:pro 72 KKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIED 151 (945) Q Consensus 72 kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrted 151 (945) +++.+ . . ...... + ..++. .+..+....+|+..+.-+-+-|+.+- ..+ T Consensus 60 ~~~~~--~------~--~~~~~~--------~--~~~~~----------ki~~n~~~~ivd~~~~~l~g~~~~~~--~~~ 107 (478) T protein:vir:10 60 DAPPK--R------D--VNGDYD--------E--TKPDW----------RMYTNYHQNLVDQKVAYAVANPVTFG--VDN 107 (478) T ss_pred ccccc--c------c--cccccc--------c--ccccc----------eeccchHHHHHHHHHhhhccCCeeee--cCC Confidence 11100 0 0 000000 0 00000 01122333455666665556666542 111 Q ss_pred cccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC Q lcl|Aclame:pro 152 KHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED 231 (945) Q Consensus 152 g~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d 231 (945) . .....+..+++ |. | ......+..+.+.+|.+|+.+..+..|++ .+..++|..+.++.++. T Consensus 108 d---------~~~~~l~~~~~--n~------~-~~~~~~~~~~~~~~G~~~~~~~~d~~g~~-~~~~~~p~~~~~i~d~~ 168 (478) T protein:vir:10 108 D---------KALKQIQHTLN--HK------W-DDKLVDILTAASNKGIEWVQPYVDEEGEF-KTFRVPAEQAVPIWTNK 168 (478) T ss_pred h---------HHHHHHHHHHh--cC------H-HHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEEcCC Confidence 0 01123444443 31 1 12344567788899999999888888886 57889999998887643 Q ss_pred --CceE--EEEEEeeCCc-eeeeecccceeeeeecc------------------------CCCC-------ccCcccccH Q lcl|Aclame:pro 232 --TGIV--VGYVQEVDGA-IVAHFDKRDVVLFRQNL------------------------TPDV-------YMYGYSLPP 275 (945) Q Consensus 232 --G~~~--~~Yv~~~dG~-~~~~~~a~DVIh~r~n~------------------------~~d~-------~~~GyGlSP 275 (945) +... ++++ ..++. ....+..+.+.+++... ++.+ .....|.|- T Consensus 169 ~~~~~~~~v~~~-~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n~~~g~sd 247 (478) T protein:vir:10 169 ERDELQAFIRVY-ELDGAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFIPFKNNPQEVSD 247 (478) T ss_pred CCCceEEEEEEE-EecCceEEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCccceEEeccCCCCCCc Confidence 2222 1111 11221 11122222222221100 0000 011245555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCccccc--CC Q lcl|Aclame:pro 276 IEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS--GG 353 (945) Q Consensus 276 I~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL--~~ 353 (945) +......++....+.....+.+... +.|-.++ .+... . .....+.... ..+++.+ ++ T Consensus 248 ~~~v~~liDa~~~~~S~~~~~~~~~-~~p~~~~--~g~~~---------~--~~~~~~~~~~-------~~~~~~~~~~~ 306 (478) T protein:vir:10 248 LFMYKTIIDALDKRLSDTQNTFDES-VELIYIL--KGYEG---------E--DMKDFMHNLK-------YYKAISVAGES 306 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hCceeee--ecCCc---------c--ccchhhhhhh-------hcceEEecCCC Confidence 5554444444333333333333222 2343333 22110 0 0011111111 1111212 22 Q ss_pred CceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHH-------------HHHHHHHHHHHHHH Q lcl|Aclame:pro 354 KFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMA-------------SLTKAKGLEPLMAT 420 (945) Q Consensus 354 G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~-------------~~F~~~tL~Pll~~ 420 (945) |.+...+........+.+..+...+.|...-++|..-.+.. .++-|. ++.. ...+..+++-.++. T Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~n~Sg-~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~l 384 (478) T protein:vir:10 307 GSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKF-GNSPSG-IALKFMYSNLDLKANKLKNKTLTALQELLQY 384 (478) T ss_pred CCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccCcccc-ccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 33333333333455667888888999999999986433211 122221 2111 11122222222222 Q ss_pred HHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccch Q lcl|Aclame:pro 421 ISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQA 500 (945) Q Consensus 421 IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a 500 (945) +.. .+-.......+.+.|+.....|..+.++++.++ +|+++...+++++++ +++.+.-+-. ...... T Consensus 385 i~~----~~g~~~~~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~--v~D~~~E~~r-----i~~E~~ 451 (478) T protein:vir:10 385 IID----FYRLDVKVQDIEITFNFNVMVNELENSQIAMNS--TGLLSKETILSNHAW--VEDPVAEMER-----IEQENI 451 (478) T ss_pred HHH----HhCCCcccccceEEecCCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCC--CCCHHHHHHH-----HHHHHH Confidence 221 111112233567888888888999999988776 688998888887754 2222211100 000000 Q ss_pred hhccCCCCcccccccCCCCCCCCCCCCCCccccch Q lcl|Aclame:pro 501 KAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSE 535 (945) Q Consensus 501 ~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se 535 (945) ...+.. + ....+..+....+.+++.+ + T Consensus 452 ~~~~~~-~----~~~~~~~~~~~~~~~~~~~---~ 478 (478) T protein:vir:10 452 ELNQQL-P----DIEEGLNGEQQRQSENNQP---E 478 (478) T ss_pred HHHhhc-c----ccccccCCCCCCCCCCCCC---C Confidence 000000 0 0000111111111111111 1 No 204 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=96.74 E-value=0.00037 Score=39.39 Aligned_cols=448 Identities=14% Similarity=0.099 Sum_probs=178.0 Q ss_pred ceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcc-cceeccccCCcccchhhhhhHHhhhccHHHHHHHHHH Q lcl|Aclame:pro 56 STVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPE-SLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEI 134 (945) Q Consensus 56 ~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~-sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iI 134 (945) -.-.+-.-|.+..+ .++...++.....+...++-.+.-. ....+. ....+..-+++.+|..+ .+|.|..||+.| T Consensus 1 m~~lfg~~i~~~~~---~~~~~s~~~~~~~dg~~~i~~~~~~~~~~~~e-~~~~~~~eLI~~YR~ma-~~pEvd~Av~eI 75 (533) T protein:vir:10 1 MSQLFGFSLERAKK---APKGPSFVQKDNLDGSQPVSGGGYYGYTVDFD-GQVRNEYQLISRYREMV-LQPECDSAVDDI 75 (533) T ss_pred Cccccccccccccc---cccCCCCCCCCcccccceeecccccceeeecc-cccchHHHHHHHHHHHh-hccchhhHHHHh Confidence 11122223333322 2222212111111111010000000 000000 01122344566666655 789999999999 Q ss_pred HHhhccC-----ceEEEEeccCcccccccchh--hcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEe Q lcl|Aclame:pro 135 PKKLTSK-----ELEIYKHIEDKHVNYYLKRI--RDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIR 207 (945) Q Consensus 135 A~~IAsL-----P~~VyRrtedg~ee~~~r~~--a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iir 207 (945) .+.+.-. |..|- .++.....+.+.. ..-..+.+|| |-..++++. ++.++..|..|+.++. T Consensus 76 Vneaiv~d~~~~pV~i~--Ld~~~~s~~iK~kI~eEF~~Il~ll---~F~~~~~e~--------fR~WYVDgRi~fHkii 142 (533) T protein:vir:10 76 VNETICGNFDDVPVSVE--LSNLKVSDKIKKLIREEFGEILRLL---DFENRSYEI--------FRRWYVDGRLFYHKVI 142 (533) T ss_pred hcceeeecCCCceEEEE--ecccccchHHHHHHHHHHHHHHHHh---ccchhhhHH--------HhhhhhcceEEEEEEe Confidence 9877532 22221 1111111111111 1112333444 344455554 4455678888988766 Q ss_pred cC---CCeEEEEEEcCCceeEEEEcC-----CCc------------eEEEEEEeeCC-----ceeeeecccceeeeeecc Q lcl|Aclame:pro 208 DE---QGNLVAITPVDGTTIKPILSE-----DTG------------IVVGYVQEVDG-----AIVAHFDKRDVVLFRQNL 262 (945) Q Consensus 208 d~---~G~pveL~pLdPs~Vtv~~d~-----dG~------------~~~~Yv~~~dG-----~~~~~~~a~DVIh~r~n~ 262 (945) +. ...+.+|++|+|..|+.++.- ++. ...+|.+.+.| +....++. +.|++.+-. T Consensus 143 d~~~pk~GI~ELr~lDPr~i~~vr~i~~~~~~~~~~~~~~~~v~~~~~eyf~Ynp~g~~~~~~~~vkI~~-dAI~y~hSG 221 (533) T protein:vir:10 143 DPDNPQGGLIELRYIDPRKIRKINETEQKRPEQLRGLPLNQQLSPKSAEYFLYDPKGLKNSTTQGLKIAP-DSICYVHSG 221 (533) T ss_pred cCCCccccceeeeeccccceeeeeeeeccCCCccceeecchhhhccceeeeeeccccccccCCCceecch-hheeeeecc Confidence 63 346899999999999875421 121 11123333322 22233443 445443211 Q ss_pred CCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHh-- Q lcl|Aclame:pro 263 TPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIM-- 340 (945) Q Consensus 263 ~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~-- 340 (945) - .+...++=+|-+..|...+....-.+.. .-.++=..++-+-|+...-|.. |..-.++=+..+...+++.. T Consensus 222 l-~d~~~~~i~syLhkAiKp~NQLkm~EDA-lVIYRitRAPeRRvFYIDVGnL-----Pk~KAeqYlr~iM~k~KNklVY 294 (533) T protein:vir:10 222 I-MDLNKNMTLSHLHKAIKAVNQLRMIEDS-LVIYRLSRAPERRIFYIDVGNL-----PKNKAEQYLREVMGRYRNKLVY 294 (533) T ss_pred c-eeCCCCceeccchHhHHHHHhhHHHHhh-HHHHhhhccccceEEEEecCCC-----CchhHHHHHHHHHHhccceEEE Confidence 1 1111223345567777666655444443 2233334566666776654322 11111112222222222211 Q ss_pred ---cC--ccc--Ccccc----c-----CCCceeeeccC--ChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCccc- Q lcl|Aclame:pro 341 ---MG--DYT--QVPIL----S-----GGKFTWIDFKG--KRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKAT- 401 (945) Q Consensus 341 ---sG--~Na--gkp~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN- 401 (945) .| .+. ...|+ | +.|.+.+.+.- +.-++ +-.+|..+...++++||.+-|+.-...+... T Consensus 295 Da~TGev~ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnLgem---~DV~YF~kKLY~aLnVP~SRl~~e~~f~~Gr~ 371 (533) T protein:vir:10 295 DANTGEIKDDKKFMSMLEDFWLPRREGGRGTEITTLPGGQNLGEL---EDVKYFQKKLYKSLNVPGSRLETETTFNVGRA 371 (533) T ss_pred eccCceecccchhhhhHhhhcccccCCCCccceeeccccCCcChH---HHHHHHHHHHHHHhCCCccccCCCCccccccc Confidence 22 111 11121 1 23566666543 33344 4456788999999999999996543322222 Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeEEEeechhhcC-------HHHHHHHHHH Q lcl|Aclame:pro 402 --AEVMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIKLWFKEDDLEK-------ERDWWNIIQG 459 (945) Q Consensus 402 --~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~f~fd~~~l~D-------~kerae~~~~ 459 (945) +.-.-..| ...+.-+..++...+...|... ++ ...+.++|..+..-. +..|+.+++. T Consensus 372 ~EItRDEiKF-~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~ 450 (533) T protein:vir:10 372 AEITRDEVKF-QKFVARLRKRFSELFTDLLKTQLVLKGVISIEEWDQMKEHIQYDYIADNYFAELKEIEIRNERMNQVAT 450 (533) T ss_pred chhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHH Confidence 22222233 3345556666666655444222 22 234566666554432 2345555544 Q ss_pred HHh--CCCcCHHHHHH-HHhCCCCC--Cccccc---cccccc-cccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 460 QLN--TGFRSINEARM-EKGLEPVP--WGDVPF---SGLRNW-KPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 460 ~v~--~GimT~NEaRe-~lGlpPve--GGD~~l---~~~n~~-~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +-. .-.++.+=+|+ .+.+.-.+ ..+... ..-+.+ .|++ ......++..++...++++ +..+.- T Consensus 451 ~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~ 522 (533) T protein:vir:10 451 MDPFVGKYFSVEYMRRQVLKQTDVEMKEIDKQIESEMESGIIADPAA-EMDPAMAAGDPDAGGAPAE-------EVAPEG 522 (533) T ss_pred hhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCCcc-hhhHHhcCCCCCcCCcccc-------cCCCCC Confidence 311 11334444443 23332110 000000 000000 0111 0011111111111111111 001111 Q ss_pred cccchhHHHHH Q lcl|Aclame:pro 531 SVPSEQKNAGL 541 (945) Q Consensus 531 ~~~se~k~a~~ 541 (945) +.|+.++.+.. T Consensus 523 ~~~~~~~~~~~ 533 (533) T protein:vir:10 523 PDPSDERKAEF 533 (533) T ss_pred CCcchhhccCC Confidence 12222221111 No 205 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=96.63 E-value=0.00046 Score=38.90 Aligned_cols=424 Identities=10% Similarity=-0.016 Sum_probs=166.5 Q ss_pred ccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCC--CcccccCcccceec Q lcl|Aclame:pro 25 SNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFK--FNLFEYSPESLMYL 102 (945) Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~--f~L~~~s~~sl~~l 102 (945) -++-+-+..+-| -+.|-...+--+++..++++..+.. +..--. ..++.+... .+ T Consensus 1 m~~~~~~k~~~~--------------------~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~i~~~~~~Y~g~~~---~~ 56 (500) T protein:vir:30 1 MGVIQKIKNLVT--------------------RSKYVMTTQSLTNITDHPKIAISKL-EYDRITTNLKYYKSDWD---SV 56 (500) T ss_pred CchHHHHHHHHH--------------------HHHHHhhcchhhhhhccccccCCHH-HHHHHHHHHHHhcCCCC---Cc Confidence 111111111111 0111000111112222233222110 000000 011111100 01 Q ss_pred cccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHH Q lcl|Aclame:pro 103 PSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVN 182 (945) Q Consensus 103 ps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~e 182 (945) .-+...+ ....+.......-...++..|+-+..=|-.+- . ++ ......+.+++. -| . T Consensus 57 ~~~~~~~-----~~~~~~~~slnl~~~i~~~~A~lv~~e~~~i~-~--~d--------~~~~~~l~~il~-~n------~ 113 (500) T protein:vir:30 57 LYLNTDG-----ETKKRDLNHLPIARTAAKKIASLVFNEQAEIK-V--DD--------DAANEFISETLK-ND------R 113 (500) T ss_pred ccccCCC-----CcccCceeecchHHHHHHHHhhhhcCCcceEe-c--CC--------hHHHHHHHHHHh-hc------c Confidence 1111000 00001111112223344555555544333321 0 11 111223444443 12 3 Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceE-E---------------EEE----E-e Q lcl|Aclame:pro 183 SWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIV-V---------------GYV----Q-E 241 (945) Q Consensus 183 Fwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~-~---------------~Yv----~-~ 241 (945) |+.. +...+...+..|..++-+..+. |.+ .+..++|..+.+...+.++.. . .|. + . T Consensus 114 f~~~-~~~~~e~a~a~G~~~~k~~~d~-~~~-~I~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~ 190 (500) T protein:vir:30 114 FNKN-FERYLESCLALGGLAMRPYVDG-DKV-RVAFVQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEW 190 (500) T ss_pred HHHH-HHHHHHHHhhcCCEEEEEEEeC-Cce-EEEEEcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEE Confidence 4443 3445556667777777666653 443 467788888777544332221 0 010 0 0 Q ss_pred eCCcee----eeecc--------------------cc----------eeeeeec-cCCCCccCcccccHHHHHHHHHHHH Q lcl|Aclame:pro 242 VDGAIV----AHFDK--------------------RD----------VVLFRQN-LTPDVYMYGYSLPPIEILYKVILSD 286 (945) Q Consensus 242 ~dG~~~----~~~~a--------------------~D----------VIh~r~n-~~~d~~~~GyGlSPI~aa~~~I~~~ 286 (945) .+|... ..+.. .+ ..|++.. .+.-....++|+|.+..+...+... T Consensus 191 ~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~l 270 (500) T protein:vir:30 191 QSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFI 270 (500) T ss_pred eCCceeEEEEEEEecccccccCcccccccccCCcCcceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHH Confidence 011100 00100 00 0111110 0111112357999999999888887 Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeccccccccc-cchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChh Q lcl|Aclame:pro 287 IFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGD-IYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRR 365 (945) Q Consensus 287 ~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k-~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~ 365 (945) ........+-|. .|.+ . |.........+.. ..+...+...-... +..+.+- ..-.+++..++.++.... T Consensus 271 D~~~s~~~~e~~-~g~~-~-i~v~~~~l~~~~~~~~g~~~~~~~~d~~---~~~~~~~----~~~~~~~~~i~~~~~~ir 340 (500) T protein:vir:30 271 NTTYDEFMWEVK-MGQR-R-VAVPESLTALTVRTTDGDVVPRPRFESD---QNVYIRM----GGRDLDSSAIQDLTTPIR 340 (500) T ss_pred HHHHHHHHHHHH-hCcc-e-eeechHHhcccCCCCCccccCCcccCCC---cceEEEc----CCCCCcCcceeEeccccC Confidence 666666666664 3432 2 2211100000000 00000000000000 0000000 000123344666666667 Q ss_pred hHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHHHHHHHHHHH-hhcc Q lcl|Aclame:pro 366 DMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLMATISKGFDE-VVSE 431 (945) Q Consensus 366 D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~~IEqeLn~-kL~~ 431 (945) +-++.+..+...++|+...|++|..+|....+.. ++.+. .+..++.+|..+++.+.+..+. .+.. T Consensus 341 ~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~-TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~ 419 (500) T protein:vir:30 341 ADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMK-TATEIVSENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQ 419 (500) T ss_pred hHHHHHHHHHHHHHHHHHhCCCccccccCcCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Confidence 7889999999999999999999999998765542 33332 1222333333333333322111 0111 Q ss_pred c--cccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHH-hCCCCCCccccccccccccccccchhhccCCCC Q lcl|Aclame:pro 432 F--RNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEK-GLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMP 508 (945) Q Consensus 432 ~--~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~l-GlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~ 508 (945) . .....+.+.|+.....|.++.++...+++.+|+|+.-+++.+. |++ ..+..- .. +.. ....... T Consensus 420 ~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~~g~~---eeea~~----~l--~~i---~~E~~~~ 487 (500) T protein:vir:30 420 SEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKVLNVT---EEKAQE----IA--AEI---NTGIVDE 487 (500) T ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhcCCCC---HHHHHH----HH--HHH---HHhcccc Confidence 1 1122466888888888999999999999999999999987653 322 111100 00 000 0000000 Q ss_pred cccccccCCCCCC Q lcl|Aclame:pro 509 PQLAQAMADQPSQ 521 (945) Q Consensus 509 ~~~~~~~~d~~~~ 521 (945) .......++.-++ T Consensus 488 ~~~~~~~~~~~g~ 500 (500) T protein:vir:30 488 INQQRTDTHLYGE 500 (500) T ss_pred CCCCCccccccCC Confidence 0000001111111 No 206 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=96.63 E-value=0.00046 Score=38.90 Aligned_cols=424 Identities=10% Similarity=-0.016 Sum_probs=166.5 Q ss_pred ccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCC--CcccccCcccceec Q lcl|Aclame:pro 25 SNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFK--FNLFEYSPESLMYL 102 (945) Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~--f~L~~~s~~sl~~l 102 (945) -++-+-+..+-| -+.|-...+--+++..++++..+.. +..--. ..++.+... .+ T Consensus 1 m~~~~~~k~~~~--------------------~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~i~~~~~~Y~g~~~---~~ 56 (500) T protein:vir:98 1 MGVIQKIKNLVT--------------------RSKYVMTTQSLTNITDHPKIAISKL-EYDRITTNLKYYKSDWD---SV 56 (500) T ss_pred CchHHHHHHHHH--------------------HHHHHhhcchhhhhhccccccCCHH-HHHHHHHHHHHhcCCCC---Cc Confidence 111111111111 0111000111112222233222110 000000 011111100 01 Q ss_pred cccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHH Q lcl|Aclame:pro 103 PSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVN 182 (945) Q Consensus 103 ps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~e 182 (945) .-+...+ ....+.......-...++..|+-+..=|-.+- . ++ ......+.+++. -| . T Consensus 57 ~~~~~~~-----~~~~~~~~slnl~~~i~~~~A~lv~~e~~~i~-~--~d--------~~~~~~l~~il~-~n------~ 113 (500) T protein:vir:98 57 LYLNTDG-----ETKKRDLNHLPIARTAAKKIASLVFNEQAEIK-V--DD--------DAANEFISETLK-ND------R 113 (500) T ss_pred ccccCCC-----CcccCceeecchHHHHHHHHhhhhcCCcceEe-c--CC--------hHHHHHHHHHHh-hc------c Confidence 1111000 00001111112223344555555544333321 0 11 111223444443 12 3 Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceE-E---------------EEE----E-e Q lcl|Aclame:pro 183 SWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIV-V---------------GYV----Q-E 241 (945) Q Consensus 183 Fwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~-~---------------~Yv----~-~ 241 (945) |+.. +...+...+..|..++-+..+. |.+ .+..++|..+.+...+.++.. . .|. + . T Consensus 114 f~~~-~~~~~e~a~a~G~~~~k~~~d~-~~~-~I~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~ 190 (500) T protein:vir:98 114 FNKN-FERYLESCLALGGLAMRPYVDG-DKV-RVAFVQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEW 190 (500) T ss_pred HHHH-HHHHHHHHhhcCCEEEEEEEeC-Cce-EEEEEcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEE Confidence 4443 3445556667777777666653 443 467788888777544332221 0 010 0 0 Q ss_pred eCCcee----eeecc--------------------cc----------eeeeeec-cCCCCccCcccccHHHHHHHHHHHH Q lcl|Aclame:pro 242 VDGAIV----AHFDK--------------------RD----------VVLFRQN-LTPDVYMYGYSLPPIEILYKVILSD 286 (945) Q Consensus 242 ~dG~~~----~~~~a--------------------~D----------VIh~r~n-~~~d~~~~GyGlSPI~aa~~~I~~~ 286 (945) .+|... ..+.. .+ ..|++.. .+.-....++|+|.+..+...+... T Consensus 191 ~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~l 270 (500) T protein:vir:98 191 QSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFI 270 (500) T ss_pred eCCceeEEEEEEEecccccccCcccccccccCCcCcceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHH Confidence 011100 00100 00 0111110 0111112357999999999888887 Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeccccccccc-cchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChh Q lcl|Aclame:pro 287 IFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGD-IYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRR 365 (945) Q Consensus 287 ~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k-~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~ 365 (945) ........+-|. .|.+ . |.........+.. ..+...+...-... +..+.+- ..-.+++..++.++.... T Consensus 271 D~~~s~~~~e~~-~g~~-~-i~v~~~~l~~~~~~~~g~~~~~~~~d~~---~~~~~~~----~~~~~~~~~i~~~~~~ir 340 (500) T protein:vir:98 271 NTTYDEFMWEVK-MGQR-R-VAVPESLTALTVRTTDGDVVPRPRFESD---QNVYIRM----GGRDLDSSAIQDLTTPIR 340 (500) T ss_pred HHHHHHHHHHHH-hCcc-e-eeechHHhcccCCCCCccccCCcccCCC---cceEEEc----CCCCCcCcceeEeccccC Confidence 666666666664 3432 2 2211100000000 00000000000000 0000000 000123344666666667 Q ss_pred hHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHHHHHHHHHHH-hhcc Q lcl|Aclame:pro 366 DMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLMATISKGFDE-VVSE 431 (945) Q Consensus 366 D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~~IEqeLn~-kL~~ 431 (945) +-++.+..+...++|+...|++|..+|....+.. ++.+. .+..++.+|..+++.+.+..+. .+.. T Consensus 341 ~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~-TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~ 419 (500) T protein:vir:98 341 ADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMK-TATEIVSENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQ 419 (500) T ss_pred hHHHHHHHHHHHHHHHHHhCCCccccccCcCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Confidence 7889999999999999999999999998765542 33332 1222333333333333322111 0111 Q ss_pred c--cccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHH-hCCCCCCccccccccccccccccchhhccCCCC Q lcl|Aclame:pro 432 F--RNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEK-GLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMP 508 (945) Q Consensus 432 ~--~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~l-GlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~ 508 (945) . .....+.+.|+.....|.++.++...+++.+|+|+.-+++.+. |++ ..+..- .. +.. ....... T Consensus 420 ~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~~g~~---eeea~~----~l--~~i---~~E~~~~ 487 (500) T protein:vir:98 420 SEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKVLNVT---EEKAQE----IA--AEI---NTGIVDE 487 (500) T ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhcCCCC---HHHHHH----HH--HHH---HHhcccc Confidence 1 1122466888888888999999999999999999999987653 322 111100 00 000 0000000 Q ss_pred cccccccCCCCCC Q lcl|Aclame:pro 509 PQLAQAMADQPSQ 521 (945) Q Consensus 509 ~~~~~~~~d~~~~ 521 (945) .......++.-++ T Consensus 488 ~~~~~~~~~~~g~ 500 (500) T protein:vir:98 488 INQQRTDTHLYGE 500 (500) T ss_pred CCCCCccccccCC Confidence 0000001111111 No 207 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=96.60 E-value=0.00048 Score=38.79 Aligned_cols=399 Identities=14% Similarity=0.048 Sum_probs=148.8 Q ss_pred ecceeeeccccccccccccCCCCCcccccCccc----ceeccccCCcccchhhhhhHHhh-------------------- Q lcl|Aclame:pro 66 RKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPES----LMYLPSISDPDAFFLINLFRKYR-------------------- 121 (945) Q Consensus 66 k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~s----l~~lps~s~p~~~~~~~v~~~~A-------------------- 121 (945) --|.+ +-| .++++..+-. ...+..... +..+-..-.. ......-+.+.+ T Consensus 1 ~~~~~-~~~--~~~~~~~~~~---~~~~~~~~~~~~~i~~~i~~~~~-~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~ 73 (474) T protein:vir:96 1 MINII-RMP--WDKPYGEEVV---EQMKPKVETQEEMIIRLINNHKQ-KLKDINVGQKYYDKDNDINYQAYKQDLHGNID 73 (474) T ss_pred Ccccc-cCC--CCCCCCcchh---hhccccccchHHHHHHHHHHHHH-HHHHHHHHHHHhcccCccccccchhhhccccc Confidence 00110 111 1122211110 000000000 0000000000 000000000000 Q ss_pred -------hccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHH Q lcl|Aclame:pro 122 -------FNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDD 194 (945) Q Consensus 122 -------m~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~d 194 (945) +..+-....|+..++-+-+-|+.+- .+. ....+.+..++. | .| ......+..+ T Consensus 74 ~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~---~~~--------~~~~~~l~~~~~--n------~~-~~~~~~l~~~ 133 (474) T protein:vir:96 74 YTKPDWRITTNFHQNLVDQKVSYVAGKPVTYA---HDD--------DKVLDVIHQVLD--T------RW-DNKLIDILTA 133 (474) T ss_pred ccccccccccchHHHHHHhhhhhhcccCceec---cCC--------hHHHHHHHHHHh--c------cH-HHHHHHHHHH Confidence 0111222233333333333333321 000 001112222221 1 12 2234556788 Q ss_pred HhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC--CceEEE-EEEeeCCce-eeeecccceeeeeeccC------- Q lcl|Aclame:pro 195 ILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED--TGIVVG-YVQEVDGAI-VAHFDKRDVVLFRQNLT------- 263 (945) Q Consensus 195 lLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d--G~~~~~-Yv~~~dG~~-~~~~~a~DVIh~r~n~~------- 263 (945) .+.+|.+|..+.++.+|++ .+..++|..+.++.++. +..... +.+..++.. ...+....+.++..... T Consensus 134 ~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~ 212 (474) T protein:vir:96 134 ASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFY 212 (474) T ss_pred HhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccc Confidence 8999999999889888876 67889999998887643 222111 111222221 22223333332221100 Q ss_pred -------------CCC-------ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchh Q lcl|Aclame:pro 264 -------------PDV-------YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQ 323 (945) Q Consensus 264 -------------~d~-------~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~ 323 (945) +.+ .....|.|-+......++....+....++.+... +.|-.++ .+. T Consensus 213 ~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~-~~p~lv~--~g~---------- 279 (474) T protein:vir:96 213 YGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDES-VELIYIL--RGY---------- 279 (474) T ss_pred cccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhh--cCC---------- Confidence 000 0011344555544444444333322222222222 2343333 211 Q ss_pred ccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHH Q lcl|Aclame:pro 324 LSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAE 403 (945) Q Consensus 324 LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~E 403 (945) ..+....+...++ ..+++.++++.+...++.+..+..+....+...+.|...-++|..-.+.. .++-|. + T Consensus 280 -~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~~n~Sg-~ 349 (474) T protein:vir:96 280 -EGEDLSEFMEGLK-------YYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTDKF-GSATSG-I 349 (474) T ss_pred -Ccccccchhhhhh-------ccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCcccccc-ccccHH-H Confidence 1111111222211 22334455554555455555566677888889999999999986433211 122221 1 Q ss_pred HH-------------HHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHH Q lcl|Aclame:pro 404 VM-------------ASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINE 470 (945) Q Consensus 404 qq-------------~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NE 470 (945) +. ....+...++.+++.+.. .+-.......+.+.|+.....+..+.++.+ .++|+++... T Consensus 350 Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~----~~g~~~d~~~i~i~f~~~~p~~~~e~a~~~---~~~giiS~et 422 (474) T protein:vir:96 350 ALKFLYTNLNLKANKLKNKANVALQELMQFILD----FNKIKLDAKEIEITFNFNVMVNDLEQSQIG---AQSQYLSKET 422 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCcccceeeEEecCCCccCHHHHHHHH---HHcCCCChHH Confidence 11 111222233333332222 111122234567888877777777777654 4579999888 Q ss_pred HHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccc Q lcl|Aclame:pro 471 ARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSV 532 (945) Q Consensus 471 aRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~ 532 (945) +++.+++ +++.+.-+- ............. + .....+.+. +.+.++.++++.. T Consensus 423 ~~~~lp~--v~D~~~E~e-----ri~~E~~~~~~~~-~-~~~~~~~~~-~~~~~~~~~~e~~ 474 (474) T protein:vir:96 423 LVRHHPW--VDDPKAELE-----RLDEEQLELNKQL-P-NLDDGGADG-AQQQQQSENNQSK 474 (474) T ss_pred HHHhCCC--CCCHHHHHH-----HHHHHHHHHHhhc-c-ccccccCCC-CCCcCCCCccccC Confidence 8877654 222111110 0010000000000 0 000111111 1111111111111 No 208 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=96.60 E-value=0.00048 Score=38.79 Aligned_cols=399 Identities=14% Similarity=0.048 Sum_probs=148.8 Q ss_pred ecceeeeccccccccccccCCCCCcccccCccc----ceeccccCCcccchhhhhhHHhh-------------------- Q lcl|Aclame:pro 66 RKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPES----LMYLPSISDPDAFFLINLFRKYR-------------------- 121 (945) Q Consensus 66 k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~s----l~~lps~s~p~~~~~~~v~~~~A-------------------- 121 (945) --|.+ +-| .++++..+-. ...+..... +..+-..-.. ......-+.+.+ T Consensus 1 ~~~~~-~~~--~~~~~~~~~~---~~~~~~~~~~~~~i~~~i~~~~~-~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~ 73 (474) T protein:vir:95 1 MINII-RMP--WDKPYGEEVV---EQMKPKVETQEEMIIRLINNHKQ-KLKDINVGQKYYDKDNDINYQAYKQDLHGNID 73 (474) T ss_pred Ccccc-cCC--CCCCCCcchh---hhccccccchHHHHHHHHHHHHH-HHHHHHHHHHHhcccCccccccchhhhccccc Confidence 00110 111 1122211110 000000000 0000000000 000000000000 Q ss_pred -------hccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHH Q lcl|Aclame:pro 122 -------FNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDD 194 (945) Q Consensus 122 -------m~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~d 194 (945) +..+-....|+..++-+-+-|+.+- .+. ....+.+..++. | .| ......+..+ T Consensus 74 ~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~---~~~--------~~~~~~l~~~~~--n------~~-~~~~~~l~~~ 133 (474) T protein:vir:95 74 YTKPDWRITTNFHQNLVDQKVSYVAGKPVTYA---HDD--------DKVLDVIHQVLD--T------RW-DNKLIDILTA 133 (474) T ss_pred ccccccccccchHHHHHHhhhhhhcccCceec---cCC--------hHHHHHHHHHHh--c------cH-HHHHHHHHHH Confidence 0111222233333333333333321 000 001112222221 1 12 2234556788 Q ss_pred HhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC--CceEEE-EEEeeCCce-eeeecccceeeeeeccC------- Q lcl|Aclame:pro 195 ILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED--TGIVVG-YVQEVDGAI-VAHFDKRDVVLFRQNLT------- 263 (945) Q Consensus 195 lLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d--G~~~~~-Yv~~~dG~~-~~~~~a~DVIh~r~n~~------- 263 (945) .+.+|.+|..+.++.+|++ .+..++|..+.++.++. +..... +.+..++.. ...+....+.++..... T Consensus 134 ~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~ 212 (474) T protein:vir:95 134 ASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFY 212 (474) T ss_pred HhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccc Confidence 8999999999889888876 67889999998887643 222111 111222221 22223333332221100 Q ss_pred -------------CCC-------ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchh Q lcl|Aclame:pro 264 -------------PDV-------YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQ 323 (945) Q Consensus 264 -------------~d~-------~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~ 323 (945) +.+ .....|.|-+......++....+....++.+... +.|-.++ .+. T Consensus 213 ~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~-~~p~lv~--~g~---------- 279 (474) T protein:vir:95 213 YGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDES-VELIYIL--RGY---------- 279 (474) T ss_pred cccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhh--cCC---------- Confidence 000 0011344555544444444333322222222222 2343333 211 Q ss_pred ccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHH Q lcl|Aclame:pro 324 LSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAE 403 (945) Q Consensus 324 LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~E 403 (945) ..+....+...++ ..+++.++++.+...++.+..+..+....+...+.|...-++|..-.+.. .++-|. + T Consensus 280 -~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~~n~Sg-~ 349 (474) T protein:vir:95 280 -EGEDLSEFMEGLK-------YYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTDKF-GSATSG-I 349 (474) T ss_pred -Ccccccchhhhhh-------ccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCcccccc-ccccHH-H Confidence 1111111222211 22334455554555455555566677888889999999999986433211 122221 1 Q ss_pred HH-------------HHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHH Q lcl|Aclame:pro 404 VM-------------ASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINE 470 (945) Q Consensus 404 qq-------------~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NE 470 (945) +. ....+...++.+++.+.. .+-.......+.+.|+.....+..+.++.+ .++|+++... T Consensus 350 Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~----~~g~~~d~~~i~i~f~~~~p~~~~e~a~~~---~~~giiS~et 422 (474) T protein:vir:95 350 ALKFLYTNLNLKANKLKNKANVALQELMQFILD----FNKIKLDAKEIEITFNFNVMVNDLEQSQIG---AQSQYLSKET 422 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCcccceeeEEecCCCccCHHHHHHHH---HHcCCCChHH Confidence 11 111222233333332222 111122234567888877777777777654 4579999888 Q ss_pred HHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccc Q lcl|Aclame:pro 471 ARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSV 532 (945) Q Consensus 471 aRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~ 532 (945) +++.+++ +++.+.-+- ............. + .....+.+. +.+.++.++++.. T Consensus 423 ~~~~lp~--v~D~~~E~e-----ri~~E~~~~~~~~-~-~~~~~~~~~-~~~~~~~~~~e~~ 474 (474) T protein:vir:95 423 LVRHHPW--VDDPKAELE-----RLDEEQLELNKQL-P-NLDDGGADG-AQQQQQSENNQSK 474 (474) T ss_pred HHHhCCC--CCCHHHHHH-----HHHHHHHHHHhhc-c-ccccccCCC-CCCcCCCCccccC Confidence 8877654 222111110 0010000000000 0 000111111 1111111111111 No 209 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=96.50 E-value=0.00056 Score=38.41 Aligned_cols=433 Identities=11% Similarity=0.009 Sum_probs=162.0 Q ss_pred ecceeeecccccccccc-ccC-CC-----------CCcccccCcccceeccccCCcccch-hhhhhHHhhhccHHHHHHH Q lcl|Aclame:pro 66 RKNQVLKKEKIIVPYNH-QEP-PF-----------KFNLFEYSPESLMYLPSISDPDAFF-LINLFRKYRFNNDSKLIKV 131 (945) Q Consensus 66 k~n~l~kK~K~i~p~~~-r~p-p~-----------~f~L~~~s~~sl~~lps~s~p~~~~-~~~v~~~~Am~nsaV~aCV 131 (945) --+.|+.++......-- +.- .. -...+.+.-.-+..-..+.+..... .........+...-..-.| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~YY~g~h~Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~k~Iv 80 (537) T protein:vir:78 1 MTSPLLNKPIDQLGGLLNTEITTYMASNHIKWAHIGENYYNQENDIEKSRIFYMNDKGQLREDNYASNVKISHGFFTELV 80 (537) T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccccccccccccccccccccccccchHHHHH Confidence 23333333322111100 000 00 0000000000000000000000000 0000000001111222233 Q ss_pred HHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCC Q lcl|Aclame:pro 132 SEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQG 211 (945) Q Consensus 132 ~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G 211 (945) +..++-+-+-|..+-- ..+ .+..+...|+.=+. .+|. .....+..++..+|.+|.++..+..| T Consensus 81 d~~~~yl~G~Pv~~~~-~d~-----------~~~e~~~~l~~~~~----~~~~-~~~~el~~~~s~~G~ay~~~y~de~~ 143 (537) T protein:vir:78 81 DQLAQYLLSNGVEVKV-KDE-----------DNTQLDEILQEYFD----EDFQ-ATIDTLVTNASKKGFEGIFARTTSEG 143 (537) T ss_pred HHHhhhhcccCceeec-Ccc-----------hhHHHHHHHHHHhh----ccHH-HHHHHHHHHHhhcCeeEEEeeecCCC Confidence 3333334344554321 000 01112222321110 1221 23455667788999999998889988 Q ss_pred eEEEEEEcCCceeEEEEcCCCceEE--EEEEe--eCC-----c---eeeeecccceeeeeeccCC--------------- Q lcl|Aclame:pro 212 NLVAITPVDGTTIKPILSEDTGIVV--GYVQE--VDG-----A---IVAHFDKRDVVLFRQNLTP--------------- 264 (945) Q Consensus 212 ~pveL~pLdPs~Vtv~~d~dG~~~~--~Yv~~--~dG-----~---~~~~~~a~DVIh~r~n~~~--------------- 264 (945) .+ .+..++|..+.++.++.+.... ++++. ..+ . ....+..+.+.+++..... T Consensus 144 ~~-~~~~i~p~~~~pv~d~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~ 222 (537) T protein:vir:78 144 KL-KFQTVDGLTLIPVFDDYGVLKMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNP 222 (537) T ss_pred ce-EEEEEccceeEEEEcCCCCceeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccccccc Confidence 76 5788999999888876654321 11110 000 0 1122333333333211100 Q ss_pred ---------------------------CCc-------cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEe Q lcl|Aclame:pro 265 ---------------------------DVY-------MYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAI 310 (945) Q Consensus 265 ---------------------------d~~-------~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~ 310 (945) .+. ..-.|.|-+......++....+....++.+.... -| ++.. T Consensus 223 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~-~~--ilvi 299 (537) T protein:vir:78 223 APHVLAIEESTDADFEDTDGYQVLGRSYSKFPFQLLYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFS-EA--IYVV 299 (537) T ss_pred cceeeeccccccccccccccccccccCCcceeEEEeccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhc-Cc--eeee Confidence 000 0113555566655555554444444444444332 23 3433 Q ss_pred ccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccC--CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCCh Q lcl|Aclame:pro 311 EPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG--GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSP 388 (945) Q Consensus 311 k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~--~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP 388 (945) .+.. ..-..+ ++..++.. +.+.+-+ ++++|.... ..+.......+...+.|...-.+|. T Consensus 300 ~g~~-------~~~~~~----~~~~l~~~------~~i~v~~d~~~v~~l~~~--~~~~~~e~~ld~L~~~I~~~s~~~~ 360 (537) T protein:vir:78 300 KGFS-------GDSTDK----LRQNIKAK------KMIGVNGDNAGMEIQTVS--IPYEARKAKMDIDVENIYRSGMGFN 360 (537) T ss_pred ecCC-------Cccchh----HHHHHhhc------CceeecCCCCceeEEEec--CCHHHHHHHHHHHHHHHHHhcCCCC Confidence 3211 111122 22222211 1111222 335554433 3334445566677777776654442 Q ss_pred hhcccccCCCcccHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHH Q lcl|Aclame:pro 389 QDVGILEGSNKATAE------------VMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNI 456 (945) Q Consensus 389 ~lLG~~e~gT~SN~E------------qq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~ 456 (945) . .....|+-|+.. +....+++.+|+-.++.|...++..-........+.+.|......+..+.++. T Consensus 361 ~--~~~~~gn~SGvAlk~~~~~l~~ka~~ke~~f~~~l~~~~~~i~~~~~~~~~~~~d~~~i~i~f~~~~P~n~~e~a~~ 438 (537) T protein:vir:78 361 S--TAVGDGNVTNVVIKSRYTLLAMKARKMETSLRKVLRWCADMVVSDIALRGLGEYDSNDICFEIEPHVLANELDIATT 438 (537) T ss_pred C--ccccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccceeeEEeccCCCCCHHHHHHH Confidence 1 222223333311 11233445555555555555444322223344567889999999999999999 Q ss_pred HHHHHhCCCcCHHHHHHHHhCCCCCCccccc-------cccccccccccchhh-ccCCCCc--c-----cccccCCCCCC Q lcl|Aclame:pro 457 IQGQLNTGFRSINEARMEKGLEPVPWGDVPF-------SGLRNWKPEDEQAKA-QQGAMPP--Q-----LAQAMADQPSQ 521 (945) Q Consensus 457 ~~~~v~~GimT~NEaRe~lGlpPveGGD~~l-------~~~n~~~ped~~a~~-~~~a~~~--~-----~~~~~~d~~~~ 521 (945) +.++.+.|+++...+.+.+++ +++..... ............... ..+..++ + ..+..+.+..+ T Consensus 439 ~~~l~~~giiS~eT~l~~~p~--vdd~e~ek~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 516 (537) T protein:vir:78 439 RKTEAETEALKIGNIMTVAPR--IGDDETLKLIAEELDLDYNELKDALAEQDAQSLDVSPDVQAMLDGLPVNANQPPVDP 516 (537) T ss_pred HHHHHhcCcchHHHHHHhCCC--CCCHHHHHHHHHHHHhhhhhhhhhhhhhcccccCcCcchhhhcCCCCCCCCCCCCCc Confidence 999999999998888777643 33211000 000000000000000 0000000 0 00000000011 Q ss_pred CCCCCCCCccccchhHHHHHH Q lcl|Aclame:pro 522 QGGGVDENSSVPSEQKNAGLE 542 (945) Q Consensus 522 ~~g~~dd~e~~~se~k~a~~~ 542 (945) +.+.++++.-++....+-.+. T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~ 537 (537) T protein:vir:78 517 NQPVADPNVVPPTDPNAVPQT 537 (537) T ss_pred cCCCCCCCCCCCCCCccCCCC Confidence 111111111111000000000 No 210 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=96.48 E-value=0.00059 Score=38.30 Aligned_cols=424 Identities=10% Similarity=0.080 Sum_probs=169.3 Q ss_pred CchhhhHhhhheeccccccCccccccchhchhhhhcccCCCCcchhhhhhh-hhccceeeeeeeeeecceeeeccccccc Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRA-LAWNSTVVYSIIIFRKNQVLKKEKIIVP 79 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~n~l~kK~K~i~p 79 (945) |+-.. -||+||-.- -+|-.+..+++...|. ++.. ..|- -|.+ -.|.. .| +++ +..+.. T Consensus 1 m~~~~-~ik~~~~~~--~~~~~~~~~~~~i~d~----~~i~-~~~~-~~~~i~~~~~--~Y-----~g~-----~~~l~~ 59 (505) T protein:vir:79 1 MAFWD-TLKNLFRKG--SAAVGMTKSLGQIIDD----PRIN-LPAD-EVERIARDKR--YY-----MDD-----FKQVTH 59 (505) T ss_pred CchHH-HHHHHHHHh--hhhhcchhhhhhhhcc----cCCC-CCHH-HHHHHHHHHH--Hh-----cCC-----Cccccc Confidence 54332 334444210 0011122222211110 0000 0000 0110 00110 01 110 000000 Q ss_pred cccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccc Q lcl|Aclame:pro 80 YNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLK 159 (945) Q Consensus 80 ~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r 159 (945) .+ . ++.+. ... ......-..+++..|+-+..=|..+- -++ T Consensus 60 ~~---------~-~~~~~----------~~~----------~~slnl~~~i~~~~A~ll~~e~~~i~---~~d------- 99 (505) T protein:vir:79 60 KN---------S-YGDTQ----------KHE----------LQSVNVTKLASAKLASLIFNEQCQVT---VSD------- 99 (505) T ss_pred cc---------c-CCCcc----------ccc----------eeecchHHHHHHHHHhhhcCCCceee---cCC------- Confidence 00 0 00000 000 00001122344555554444333321 011 Q ss_pred hhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceE-E-- Q lcl|Aclame:pro 160 RIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIV-V-- 236 (945) Q Consensus 160 ~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~-~-- 236 (945) ......+.++++. | .|+.. +...+...+..|..++.+..+ .|+ +.+..++|..+.+...+.++.. . T Consensus 100 -~~~~e~l~~i~~~-n------~f~~~-~~~~~e~a~a~G~~~~k~~~D-~~~-~~i~~v~ad~~~P~~~d~~~~~~~a~ 168 (505) T protein:vir:79 100 -ETANDFLDDVFQQ-N------DFYTT-FEEKLEEWIALGSGCVRPYVD-SGK-IKLAWATADQVYPLQADTNQVNELAI 168 (505) T ss_pred -hHHHHHHHHHHHh-c------cHHHH-HHHHHHHHhhcCCeEEEEEEe-CCc-eEEEEEcCCeeEEEEEcCCCeEEEEE Confidence 1122234455532 2 24443 344566667777777776666 344 3567778888777543333321 0 Q ss_pred -------------EEE----EeeCCce-e---e-----------------------------eeccc---ceeeeeeccC Q lcl|Aclame:pro 237 -------------GYV----QEVDGAI-V---A-----------------------------HFDKR---DVVLFRQNLT 263 (945) Q Consensus 237 -------------~Yv----~~~dG~~-~---~-----------------------------~~~a~---DVIh~r~n~~ 263 (945) .|+ +...++. . . .+..- -..|++ ++. T Consensus 169 ~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~p~f~~~~-~~~ 247 (505) T protein:vir:79 169 ASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPLNSLEQYEGLEPQVKITGLKHPLFAFYR-NKG 247 (505) T ss_pred EEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccchhhcccccccCcceeecCCCcceEEEec-CCc Confidence 010 0000000 0 0 00000 112222 211 Q ss_pred CC--CccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 264 PD--VYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMM 341 (945) Q Consensus 264 ~d--~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~s 341 (945) +. ....++|+|.+..+...+...........+-|.. |.+. |..........+...+.-.......+... ...+. T Consensus 248 ~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~-g~~~--i~v~~~~l~~~~~~~~~~~~~~~~~fd~~-~~~y~ 323 (505) T protein:vir:79 248 ANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKK-GQRR--LIVPAEWLKTGSSYGGQASETHPPMFDPD-ETVYQ 323 (505) T ss_pred ccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHh-cccc--eeechHHhcccCCCCcccccccccCCCcc-ceeee Confidence 11 1123579999999998888776666666666643 4332 22211100000000000000000000000 00010 Q ss_pred CcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHH-------------HH Q lcl|Aclame:pro 342 GDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMA-------------SL 408 (945) Q Consensus 342 G~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~-------------~~ 408 (945) + +..-+++..++.++....+.++.+..+...++|+...|++|..+|....+.. ++.+.. +. T Consensus 324 ~-----~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~-TAtei~s~~~~l~~t~~~~~~ 397 (505) T protein:vir:79 324 A-----MYGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPSGIQ-TATEVVTNNSQTYQTRSSYIT 397 (505) T ss_pred e-----ccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCccccc-hHHHHHHHHhHHHHHHHHHHH Confidence 0 0001223456777777777888999999999999999999999997665433 333321 12 Q ss_pred HHHHHHHHHHHHHHHHHHHhh-ccc--------cccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCC Q lcl|Aclame:pro 409 TKAKGLEPLMATISKGFDEVV-SEF--------RNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEP 479 (945) Q Consensus 409 F~~~tL~Pll~~IEqeLn~kL-~~~--------~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpP 479 (945) .++.+|..++..+........ ... .....+.+.|+.....|.++.++...+++.+|+|+.-+++... +- T Consensus 398 ~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~v~~Gi~s~e~~l~~~--~~ 475 (505) T protein:vir:79 398 QVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESKRAADLQAVQAQVMPKKQFLMRN--YG 475 (505) T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhc--CC Confidence 223333333333332221110 110 0112466788888889999999999999999999998887663 22 Q ss_pred CCCccccccccccccccccchhhccCCCCcccccccCC Q lcl|Aclame:pro 480 VPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMAD 517 (945) Q Consensus 480 veGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d 517 (945) ++..+..- .+ .. ...+.....++..+.+++ T Consensus 476 ~~eeea~~----el--~r--i~~E~~~~~p~~~~~gg~ 505 (505) T protein:vir:79 476 LDEEEADE----WL--AQ--IDAENSTAEPEFNQFGGD 505 (505) T ss_pred CChHHHHH----HH--HH--HHHhccccCCCchhccCC Confidence 32221100 00 00 000000000111111111 No 211 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=96.43 E-value=0.00063 Score=38.13 Aligned_cols=398 Identities=15% Similarity=0.080 Sum_probs=148.8 Q ss_pred eeecceeeeccccccccccccCCCCCcccccCc----ccceecc-ccCCcccchhhhhhHHhh----------------- Q lcl|Aclame:pro 64 IFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSP----ESLMYLP-SISDPDAFFLINLFRKYR----------------- 121 (945) Q Consensus 64 ~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~----~sl~~lp-s~s~p~~~~~~~v~~~~A----------------- 121 (945) .|+.= +-|-. ++.+.. .+....... +-+..+- .... .........+++ T Consensus 1 ~~~~~---~~~~~-~~~~~~----~~~~~~~~~~~~~~~i~~~i~~~~~--~~~~~~~~~~YY~g~~~i~~~~~~~~~~~ 70 (474) T protein:vir:97 1 MFNII---RMPWD-KPYGEE----VVEQLKPQFETQEEMIVRLIDDHRK--QLDKITVGQRYYDKDNDIVKQMKKVDVHG 70 (474) T ss_pred Ccccc---cccCC-CchhhH----HHHhhhhcccCHHHHHHHHHHHHHH--HHHHHHHHHHHhccccchhcccchhcccc Confidence 12111 11110 111100 000000000 0000000 0000 000000000000 Q ss_pred ----------hccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHH Q lcl|Aclame:pro 122 ----------FNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMV 191 (945) Q Consensus 122 ----------m~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~L 191 (945) +..+-....|+..++-+-+-|+.+- .+ . ......+..++. |. | ......+ T Consensus 71 ~~~~~~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~---~~--d------~~~~~~l~~~~~--n~------~-~~~~~e~ 130 (474) T protein:vir:97 71 NIDYDKPDWRITTNFHQNLVDQKVSYVASKPVTYS---CE--D------ENVLKVIHDVLD--TR------W-DNKLIDI 130 (474) T ss_pred ccccccCcceeecchHHHHHHHHHhhhhcCCceec---cC--c------HHHHHHHHHHHh--cc------H-HHHHHHH Confidence 1112233344444444444444321 00 0 001111222221 21 1 1233456 Q ss_pred HHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC--CceEE--EEEEeeCCceeeeecccceeeeeecc----- Q lcl|Aclame:pro 192 LDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED--TGIVV--GYVQEVDGAIVAHFDKRDVVLFRQNL----- 262 (945) Q Consensus 192 v~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d--G~~~~--~Yv~~~dG~~~~~~~a~DVIh~r~n~----- 262 (945) ..+.+.+|.+|..+..+.+|++ .+..++|..+.++.++. +.... +|+...+......+....+.+++... T Consensus 131 ~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~ 209 (474) T protein:vir:97 131 LTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIP 209 (474) T ss_pred HHHHhhcCceEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCcccc Confidence 6778899999999888888876 57789999998887643 22211 11111111111122222222221100 Q ss_pred --------------------CCCC--ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccccccc Q lcl|Aclame:pro 263 --------------------TPDV--YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDI 320 (945) Q Consensus 263 --------------------~~d~--~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~ 320 (945) .|-. .....|.|-+..+...++....+.....+.+... +.|-.++. +.. T Consensus 210 ~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~-~~~~lv~~--g~~------ 280 (474) T protein:vir:97 210 DYYYGANHVQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSIIDAIDKRLSDAQNMFDES-VELIYILK--GYE------ 280 (474) T ss_pred ccccCcCcccccccccCCCccceEEecCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh-cCceeeee--cCC------ Confidence 0000 0012465656655555555443333333333222 23444432 211 Q ss_pred chhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcc Q lcl|Aclame:pro 321 YPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKA 400 (945) Q Consensus 321 ~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~S 400 (945) .+..+.+.... ...+++.+++|.+...++.......+.+..+...+.|...-++|..-.+.. .++-| T Consensus 281 -----~~~~~~~~~~~-------~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~~n~S 347 (474) T protein:vir:97 281 -----GEDLEEFMRGL-------KYYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKF-GSAPS 347 (474) T ss_pred -----cccchhhhhhh-------hccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCcccc-ccccH Confidence 01111111111 123345555555555555544555666778888899999999985332211 12222 Q ss_pred cHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcC Q lcl|Aclame:pro 401 TAEVM-------------ASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRS 467 (945) Q Consensus 401 N~Eqq-------------~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT 467 (945) . ++. ....+..+++.+++.+.+.+ -.......+.+.|+.....+..+.++. +.++|+++ T Consensus 348 g-~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~----~~~~d~~~i~v~f~~~~p~~~~e~a~~---~~~~g~iS 419 (474) T protein:vir:97 348 G-IALKFLYGNLDLKANKLKNKATVAIQELISFIIDFN----NLKTDVKDIEISFNFNRMMNDAEQSQI---IAQSQYLS 419 (474) T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccceeeEEeccCcccCHHHHHHH---HHHcCCCC Confidence 1 121 11223333333333333221 112233457788877776676665554 45579999 Q ss_pred HHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhH Q lcl|Aclame:pro 468 INEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQK 537 (945) Q Consensus 468 ~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k 537 (945) ...++++++. +++.+.-+- ......... ....+. ....+.+.+.+ .++.++ .+.+ T Consensus 420 ~et~l~~l~~--v~D~~~E~e-----ri~~E~~~~-~~~~~~-~~~~~~~~~~~-~~~~~~-----~~~e 474 (474) T protein:vir:97 420 RETLVKSSPL--VDDYKAELE-----RIEQEQMEY-NKQLPN-LDDGGADGAQQ-QEGSNN-----KESE 474 (474) T ss_pred HHHHHHhCCC--CCCHHHHHH-----HHHHHHHHH-Hhhccc-cCCCCCCCccc-CCCCcc-----cccC Confidence 8888877643 222111000 001101110 011110 11111111110 000000 0111 No 212 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=96.43 E-value=0.00063 Score=38.13 Aligned_cols=398 Identities=15% Similarity=0.080 Sum_probs=148.8 Q ss_pred eeecceeeeccccccccccccCCCCCcccccCc----ccceecc-ccCCcccchhhhhhHHhh----------------- Q lcl|Aclame:pro 64 IFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSP----ESLMYLP-SISDPDAFFLINLFRKYR----------------- 121 (945) Q Consensus 64 ~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~----~sl~~lp-s~s~p~~~~~~~v~~~~A----------------- 121 (945) .|+.= +-|-. ++.+.. .+....... +-+..+- .... .........+++ T Consensus 1 ~~~~~---~~~~~-~~~~~~----~~~~~~~~~~~~~~~i~~~i~~~~~--~~~~~~~~~~YY~g~~~i~~~~~~~~~~~ 70 (474) T protein:vir:94 1 MFNII---RMPWD-KPYGEE----VVEQLKPQFETQEEMIVRLIDDHRK--QLDKITVGQRYYDKDNDIVKQMKKVDVHG 70 (474) T ss_pred Ccccc---cccCC-CchhhH----HHHhhhhcccCHHHHHHHHHHHHHH--HHHHHHHHHHHhccccchhcccchhcccc Confidence 12111 11110 111100 000000000 0000000 0000 000000000000 Q ss_pred ----------hccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHH Q lcl|Aclame:pro 122 ----------FNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMV 191 (945) Q Consensus 122 ----------m~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~L 191 (945) +..+-....|+..++-+-+-|+.+- .+ . ......+..++. |. | ......+ T Consensus 71 ~~~~~~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~---~~--d------~~~~~~l~~~~~--n~------~-~~~~~e~ 130 (474) T protein:vir:94 71 NIDYDKPDWRITTNFHQNLVDQKVSYVASKPVTYS---CE--D------ENVLKVIHDVLD--TR------W-DNKLIDI 130 (474) T ss_pred ccccccCcceeecchHHHHHHHHHhhhhcCCceec---cC--c------HHHHHHHHHHHh--cc------H-HHHHHHH Confidence 1112233344444444444444321 00 0 001111222221 21 1 1233456 Q ss_pred HHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCC--CceEE--EEEEeeCCceeeeecccceeeeeecc----- Q lcl|Aclame:pro 192 LDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED--TGIVV--GYVQEVDGAIVAHFDKRDVVLFRQNL----- 262 (945) Q Consensus 192 v~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~d--G~~~~--~Yv~~~dG~~~~~~~a~DVIh~r~n~----- 262 (945) ..+.+.+|.+|..+..+.+|++ .+..++|..+.++.++. +.... +|+...+......+....+.+++... T Consensus 131 ~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~ 209 (474) T protein:vir:94 131 LTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIP 209 (474) T ss_pred HHHHhhcCceEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCcccc Confidence 6778899999999888888876 57789999998887643 22211 11111111111122222222221100 Q ss_pred --------------------CCCC--ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccccccc Q lcl|Aclame:pro 263 --------------------TPDV--YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDI 320 (945) Q Consensus 263 --------------------~~d~--~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~ 320 (945) .|-. .....|.|-+..+...++....+.....+.+... +.|-.++. +.. T Consensus 210 ~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~-~~~~lv~~--g~~------ 280 (474) T protein:vir:94 210 DYYYGANHVQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSIIDAIDKRLSDAQNMFDES-VELIYILK--GYE------ 280 (474) T ss_pred ccccCcCcccccccccCCCccceEEecCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh-cCceeeee--cCC------ Confidence 0000 0012465656655555555443333333333222 23444432 211 Q ss_pred chhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcc Q lcl|Aclame:pro 321 YPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKA 400 (945) Q Consensus 321 ~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~S 400 (945) .+..+.+.... ...+++.+++|.+...++.......+.+..+...+.|...-++|..-.+.. .++-| T Consensus 281 -----~~~~~~~~~~~-------~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~~n~S 347 (474) T protein:vir:94 281 -----GEDLEEFMRGL-------KYYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKF-GSAPS 347 (474) T ss_pred -----cccchhhhhhh-------hccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCcccc-ccccH Confidence 01111111111 123345555555555555544555666778888899999999985332211 12222 Q ss_pred cHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcC Q lcl|Aclame:pro 401 TAEVM-------------ASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRS 467 (945) Q Consensus 401 N~Eqq-------------~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT 467 (945) . ++. ....+..+++.+++.+.+.+ -.......+.+.|+.....+..+.++. +.++|+++ T Consensus 348 g-~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~----~~~~d~~~i~v~f~~~~p~~~~e~a~~---~~~~g~iS 419 (474) T protein:vir:94 348 G-IALKFLYGNLDLKANKLKNKATVAIQELISFIIDFN----NLKTDVKDIEISFNFNRMMNDAEQSQI---IAQSQYLS 419 (474) T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccceeeEEeccCcccCHHHHHHH---HHHcCCCC Confidence 1 121 11223333333333333221 112233457788877776676665554 45579999 Q ss_pred HHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhH Q lcl|Aclame:pro 468 INEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQK 537 (945) Q Consensus 468 ~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k 537 (945) ...++++++. +++.+.-+- ......... ....+. ....+.+.+.+ .++.++ .+.+ T Consensus 420 ~et~l~~l~~--v~D~~~E~e-----ri~~E~~~~-~~~~~~-~~~~~~~~~~~-~~~~~~-----~~~e 474 (474) T protein:vir:94 420 RETLVKSSPL--VDDYKAELE-----RIEQEQMEY-NKQLPN-LDDGGADGAQQ-QEGSNN-----KESE 474 (474) T ss_pred HHHHHHhCCC--CCCHHHHHH-----HHHHHHHHH-Hhhccc-cCCCCCCCccc-CCCCcc-----cccC Confidence 8888877643 222111000 001101110 011110 11111111110 000000 0111 No 213 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=96.35 E-value=0.00072 Score=37.82 Aligned_cols=439 Identities=12% Similarity=0.019 Sum_probs=172.0 Q ss_pred CchhhhHhhhheeccccccCccccccchhchhh----hh-----------------cccCCCCcchhhhhhhhhccceee Q lcl|Aclame:pro 1 MKSLENIIKGFIVNANEQKRPSFSSNIKANVDS----LS-----------------RGKDYPGFKPLLTYRALAWNSTVV 59 (945) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 59 (945) |. .- -|+|..-.+-=-++.-..+||..- .- +....|-++-+.-| T Consensus 1 ~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~r~~~l~~y---------- 65 (501) T protein:vir:27 1 ME---QT--LFTDSTGQDLVLNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDY---------- 65 (501) T ss_pred CC---ce--eEEeccchhhhhhcccChhHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH---------- Confidence 11 10 122211111000000011111110 00 00111111111111 Q ss_pred eeeeeeec-ceeeeccccccccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 60 YSIIIFRK-NQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKL 138 (945) Q Consensus 60 ~~~~~~k~-n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~I 138 (945) | .+ +..+.+++. ..+. ..++. .+..+....+|+..+.-+ T Consensus 66 Y-----~g~~~~i~~~~~-------~~~~------------------~~~~~----------ki~~n~~k~Ivd~~~~yl 105 (501) T protein:vir:27 66 A-----RGENHDVLQFGR-------RKDR------------------EMADK----------RAVHNYGRMISKFKTGYL 105 (501) T ss_pred h-----cCCCccccccCc-------cCcc------------------ccccc----------eeccchHHHHHHHHhhhh Confidence 0 00 000000000 0000 00000 011233444666666666 Q ss_pred ccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEE Q lcl|Aclame:pro 139 TSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITP 218 (945) Q Consensus 139 AsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~pveL~p 218 (945) -+-|+.+--..... . ......+.+++.. |.. ......+..+.+.+|.+|..+.++..|++ .+.. T Consensus 106 ~g~p~~~~~~d~~~-----~--~~~~~~l~~~~~~-n~~-------~~~~~~~~~~~~~~G~a~~~vy~ded~~~-~i~~ 169 (501) T protein:vir:27 106 AGNPIRVEYDDNDN-----N--SQNDDTIKRIGRI-NDI-------DSHNRTLIRDLSQTGRAYEVIYRNEYDET-RIKR 169 (501) T ss_pred cccCeeEecCCccc-----h--HHHHHHHHHHHHh-cCh-------hHHHHHHHHHHhhCCeEEEEEEeCCCCce-EEEE Confidence 66676553111100 0 0011123333322 322 12445577888999999999999988876 5788 Q ss_pred cCCceeEEEEcCC--CceEE--EEEEeeC--Cce--eeeecccceeeeee---------ccCCC-------CccCccccc Q lcl|Aclame:pro 219 VDGTTIKPILSED--TGIVV--GYVQEVD--GAI--VAHFDKRDVVLFRQ---------NLTPD-------VYMYGYSLP 274 (945) Q Consensus 219 LdPs~Vtv~~d~d--G~~~~--~Yv~~~d--G~~--~~~~~a~DVIh~r~---------n~~~d-------~~~~GyGlS 274 (945) ++|..+.++.++. +.... +|+.... +.. ...+..+.+..+.. .+++. ......|.| T Consensus 170 ~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~~~~vyt~~~v~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~s 249 (501) T protein:vir:27 170 LNPLETFVIYDNSLEDNSIAAVRYYNRGTLQNAKDVVEIYTNEHIYTLDASDDFNEISVTTHAFGTVPITEFLNNVDGIG 249 (501) T ss_pred EccceeEEEecCCCCCceEEEEEEEEeeecCCcEEEEEEEeCCeEEEEEeCCceeeccccccCCCcccEEEecCCCCCCC Confidence 9999998887653 22211 2222111 110 11122222221110 00000 001124666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCC Q lcl|Aclame:pro 275 PIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGK 354 (945) Q Consensus 275 PI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G 354 (945) .+..+...++....+.....+.+.. ...|-.++. +... .-..+....++... ...-...+.....+.+ T Consensus 250 d~e~v~~liDa~d~~~S~~~~~~~~-~~~~~~v~~--g~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 317 (501) T protein:vir:27 250 DYETELYLIDLYDSAESDTANHMSD-MADAILAIY--GDLA-------LPKGMQASDMKRTR--LMQLKPPKSADGKEGT 317 (501) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHH-hcCceeeee--cCcc-------CCcccchhhhhhcC--ceeecccccccCCCCC Confidence 6666555555544444443433332 233444432 1110 01111222222110 0000111112223455 Q ss_pred ceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH-------------HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 355 FTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM-------------ASLTKAKGLEPLMATI 421 (945) Q Consensus 355 ~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq-------------~~~F~~~tL~Pll~~I 421 (945) .++..++....+..+....+...+.|+..-++|..-.+... ++-|. ++. ....+...++-.++.+ T Consensus 318 ~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n~Sg-~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li 395 (501) T protein:vir:27 318 VKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNIPDMSDTNFS-GNTSG-EALKYKLFGLDQDRVDTQSQFTQGLKRRYRLA 395 (501) T ss_pred cceeeeeccCCHHHHHHHHHHHHHHHHHHhCCcccCccccc-cCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 56655655555556677788889999999999975543221 22222 111 1122333344443333 Q ss_pred HHHHHHhhc-cccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCcccccccccccccccc-- Q lcl|Aclame:pro 422 SKGFDEVVS-EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDE-- 498 (945) Q Consensus 422 EqeLn~kL~-~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~-- 498 (945) ...++..-. .......+.+.|+.....+..+.++++.++ .|+++..-+.+.+++ +++.+.-+-.. .-+.. T Consensus 396 ~~~~~~~~~~~~~d~~~i~v~f~~~~p~n~~e~ad~~~kl--~g~iS~et~l~~l~~--v~D~~~E~eri---~~E~~e~ 468 (501) T protein:vir:27 396 ARIGSLVNEFKDFDESLLKITFTPNLPKSLNEQVSILTGL--GGQVSQETALSLSGL--VESPNEELDKI---NKEVSEI 468 (501) T ss_pred HHHHhhcccccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCC--CCCHHHHHHHH---HHHHHhh Confidence 333322111 112223577889888888999999988887 578988777776543 32221111000 00000 Q ss_pred chhhccCCCCcccccccCCCCCCCCCCCCCCccccc Q lcl|Aclame:pro 499 QAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPS 534 (945) Q Consensus 499 ~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~s 534 (945) ......+...+ +.+.....++...+++.+..++ T Consensus 469 ~~~~~~~~~~~---~~~~~~d~~~~~~~d~~e~~~~ 501 (501) T protein:vir:27 469 DFKGYSNDFNE---HVGKYTDEVKETHTDDFERAYE 501 (501) T ss_pred hHhhhcCcccc---ccccccCCCCCCccccccccCC Confidence 00011111111 1111111122222333333333 No 214 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=96.27 E-value=0.0008 Score=37.56 Aligned_cols=395 Identities=14% Similarity=0.112 Sum_probs=158.4 Q ss_pred eeeeecceeeecccccccc-ccccCCCCCcccccCcccceec--------cccCCcccchhhhhhHHhhhccHHHHHHHH Q lcl|Aclame:pro 62 IIIFRKNQVLKKEKIIVPY-NHQEPPFKFNLFEYSPESLMYL--------PSISDPDAFFLINLFRKYRFNNDSKLIKVS 132 (945) Q Consensus 62 ~~~~k~n~l~kK~K~i~p~-~~r~pp~~f~L~~~s~~sl~~l--------ps~s~p~~~~~~~v~~~~Am~nsaV~aCV~ 132 (945) |.+-.-++|+.+-+..-.. ..|... -...+.+.-+-+... +.+..+.. . ....+.++-....|+ T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~----~--~~~ki~~n~~k~Iv~ 73 (470) T protein:vir:10 1 MELDALKKLIQNTSTSRNDLINNYKQ-AVNYYENKTDITTRNNGKAKLNKEGKKDPLR----S--ADNRIPSNFYQLLVD 73 (470) T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccccchhccccchhcccccccccccc----c--CCcccccchHHHHHH Confidence 2222222222211100000 000000 000000000000000 00000000 0 000111223334455 Q ss_pred HHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCCe Q lcl|Aclame:pro 133 EIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGN 212 (945) Q Consensus 133 iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G~ 212 (945) ..++-+-+-|..+-- ++. .....+..++.+ | | ......+..+...+|.+|..+..+..|+ T Consensus 74 ~~~~yl~G~p~~~~~--~d~---------~~~~~l~~~~~~-~-------~-~~~~~~l~~~~~~~G~a~~~~y~d~~~~ 133 (470) T protein:vir:10 74 QEAGYVASVFPDIDV--GKD---------ADNKKIIDVLGD-D-------R-ALTLNGLLVDSSNAGRAWLHYWIDEDGN 133 (470) T ss_pred hhhhheeccceeeec--Cch---------HHHHHHHHHHhh-h-------H-HHHHHHHHHHHhhcCeeEEEEEecCCCc Confidence 555555566665421 111 112334455531 1 1 1233456678889999999999999987 Q ss_pred EEEEEEcCCceeEEEEcCC--CceEE--EEEEee--CCce----eeeecccceeeeeeccCCC----------------- Q lcl|Aclame:pro 213 LVAITPVDGTTIKPILSED--TGIVV--GYVQEV--DGAI----VAHFDKRDVVLFRQNLTPD----------------- 265 (945) Q Consensus 213 pveL~pLdPs~Vtv~~d~d--G~~~~--~Yv~~~--dG~~----~~~~~a~DVIh~r~n~~~d----------------- 265 (945) + .+..++|..+.++.++. +.... +|+... ++.. ...+....+.+++...... T Consensus 134 ~-~~~~~~p~~~~~v~d~~~~~~~~a~ir~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (470) T protein:vir:10 134 F-RYGIIQPDQITPIYATTLDNKLLGILRSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAG 212 (470) T ss_pred e-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccc Confidence 6 57889999998887653 22221 222111 1211 1122333333322110000 Q ss_pred -------------C-------ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhcc Q lcl|Aclame:pro 266 -------------V-------YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLS 325 (945) Q Consensus 266 -------------~-------~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS 325 (945) + .....|.|-+......++....+....++.+... +.|-.++. +... + T Consensus 213 ~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~-~~~~lvl~--g~~~---------~ 280 (470) T protein:vir:10 213 YETGQSNTLKHNFGRVPFIEFSKNKYRLPELNKYKGLIDAYDDIYNGFINDLDDV-QTVILVLT--NYGG---------A 280 (470) T ss_pred cccccccccccCCCeeeEEEeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh-cCcceeee--cCCc---------c Confidence 0 0011355555555555544333333333333332 23444442 2110 0 Q ss_pred HHHHHHHHHHHHHHhcCcccCccccc-------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCC Q lcl|Aclame:pro 326 REQLESIQRQLQAIMMGDYTQVPILS-------GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSN 398 (945) Q Consensus 326 ~Eq~erlKe~we~~~sG~Nagkp~VL-------~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT 398 (945) ....+...+... +++.+ ++|++|..... ....+....+...+.|...-++|..- ....|+ T Consensus 281 --~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~lt~~~--~~~~~~~~~~~L~~~I~~~s~~p~~~--~~~~gn 347 (470) T protein:vir:10 281 --DLHQFMNDLRKY-------KSIKINNTGNGDNSGVDKLQIDI--PVEARDDALKITRKNIFLFGQGIDPA--NFESSN 347 (470) T ss_pred --ccchhhhhhhhc-------CeEeccCCCCCcCceeEEEeecC--ChHHHHHHHHHHHHHHHHHhCCCCCC--cccccc Confidence 011122222211 11111 23455554443 34455677788889999988888532 222222 Q ss_pred cccHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCc Q lcl|Aclame:pro 399 KATAE------------VMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFR 466 (945) Q Consensus 399 ~SN~E------------qq~~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~Gim 466 (945) -|... ......+..+|+-.++.|...++. .......+.+.|+.....|..+.++.+.++ +|++ T Consensus 348 ~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~l~~---~~~d~~~i~i~f~~~~p~d~~e~~~~~~~~--~g~i 422 (470) T protein:vir:10 348 ASGVAIKMLYSHLELKAAKTQTYFEHAINELVRAIMRYLNF---SDADKRHISQHWTRTKVEDSLTKAQIVSTV--ANYS 422 (470) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcccceeeEEeccCCCCCHHHHHHHHHHH--hccC Confidence 22211 011222333333333333322221 122234678899999999999999988776 5889 Q ss_pred CHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 467 SINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 467 T~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) +...+++.+++ +++.+.-+ +....+.+.... ...+.....+++.++++ T Consensus 423 S~et~l~~~p~--v~D~~~E~--------eri~~E~~e~~~------~~~~~~~~~~~~~dde~ 470 (470) T protein:vir:10 423 SKEAVAKANPI--VDDWQQEL--------KDLAKDKEENDP------YSNQADELNGKGVNDEQ 470 (470) T ss_pred cHHHHHHhCCC--CCCHHHHH--------HHHHHHHHHHHH------hhccccccCCCCCCCCC Confidence 88777776543 33222111 000111111000 00111111222222222 No 215 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=96.01 E-value=0.0011 Score=36.74 Aligned_cols=420 Identities=13% Similarity=0.097 Sum_probs=178.3 Q ss_pred cchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcc------c--cee--ccccCCcc--- Q lcl|Aclame:pro 43 FKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPE------S--LMY--LPSISDPD--- 109 (945) Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~------s--l~~--lps~s~p~--- 109 (945) |||.-.---.- | +.+ +|+ +...+. ||. -.+++.+ . ..+ .++-.+.+ T Consensus 1 ~~~w~~~de~~------~------~~~-~~~-~~~S~~----~p~---~~DGa~~i~~~~~~~~~~g~~~~~~~~~~~~~ 59 (511) T protein:vir:56 1 MKFWTKEEEQD------I------QKI-EKN-PVRSFS----APD---NVDGAKEIHTNLLAPQLGHAIIPSDAQSEGTI 59 (511) T ss_pred CCCccchhhhh------h------hhh-ccC-Cccccc----CCC---CCCCceEEecccccceecceeccccccccCcc Confidence 22211000000 0 000 011 100111 111 1122211 0 000 01100000 Q ss_pred -cchhhhhhHHhhhccHHHHHHHHHHHHhhcc-----CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHH Q lcl|Aclame:pro 110 -AFFLINLFRKYRFNNDSKLIKVSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNS 183 (945) Q Consensus 110 -~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eF 183 (945) ..-+++.+|..+ .+|.|..||+.|.+.+.- -|..|- .++.....+.+.. .......+++--|-..++++. T Consensus 60 ~~~eLI~~YR~ma-~~pEvd~Av~eIvne~iv~d~~~~pV~l~--ld~~~~s~~iK~k-I~eeF~~Il~ll~F~~~~~~~ 135 (511) T protein:vir:56 60 PVKELIKSYRALA-EYHEVDDAIQEIVDEAIVYENDKEVVWLN--LDNTDFSENIKAK-INEEFDRVVSLLQMRKHGYKW 135 (511) T ss_pred chHHHHHHHHHHh-hccchhhHHHHhhcceeEecCCCceEEEE--ecccCcchHHHHH-HHHHHHHHHHHhccchhhhHH Confidence 123556666654 789999999999987752 233221 1111111111111 112222333222344455554 Q ss_pred HHHHHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcC-----CC-----ceEEEEEEeeCC--------- Q lcl|Aclame:pro 184 WEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSE-----DT-----GIVVGYVQEVDG--------- 244 (945) Q Consensus 184 wetli~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~-----dG-----~~~~~Yv~~~dG--------- 244 (945) ++.++..|..|+.++-+....+.+|++|+|..++.++.- +| +....|.|.+.+ T Consensus 136 --------fR~WYVDgRi~fHkiid~k~GI~eLr~lDPr~i~~vr~i~~~~~~~~~v~~~~~ey~~Y~~~~~~~~~~~~~ 207 (511) T protein:vir:56 136 --------FRKWYVDSRIYFHKILDKDNNIIELRPLNPMKMELVREIQKETIDGVEVVKGTLEYYVYKQSDYKMPSWMSA 207 (511) T ss_pred --------HhhhhhcceEEEEEEeccccceeehhhcCcccchhhhhhhcccccccccccceeeeeEecCCCcccCccccc Confidence 445577889999888887778999999999999765421 11 112233443221 Q ss_pred ----ceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccccccc Q lcl|Aclame:pro 245 ----AIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDI 320 (945) Q Consensus 245 ----~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~ 320 (945) +....++.+.|.|.....-.+....|+.+|-+..|...+....-++... -.+.=..++-+-|+...-|... T Consensus 208 ~~~~~~~vkI~~daI~y~hSGL~d~~~~~g~i~syLhkAiKp~NQLkm~EDAl-VIYRitRAPeRRvFYIDVGnLP---- 282 (511) T protein:vir:56 208 TNRAQTSFRIPKDAIVFAHSGLMRGCADDPYIIGYLDRAIKPANQLKMLEDAL-VIYRLARAPERRVFYVDVGNLP---- 282 (511) T ss_pred ccccccceeechhheeeecccceeccCCCCeeeccchhhhHHHHhhHHHHhhH-HHHhhhccccceEEEEecCCCC---- Confidence 1234566667766543322112334567777888887777655555433 3334445666777766543321 Q ss_pred chhccHHHHHHHHHHHHHHh-----cC--cccCc--ccc----c-----CCCceeeeccC--ChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 YPQLSREQLESIQRQLQAIM-----MG--DYTQV--PIL----S-----GGKFTWIDFKG--KRRDMQFKELAEFVARKI 380 (945) Q Consensus 321 ~~~LS~Eq~erlKe~we~~~-----sG--~Nagk--p~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~~~eeI 380 (945) ..-.++=+..+...+++.. .| .+..+ .|+ | +.|.+.+.+.- +.-++ +-.++..+.. T Consensus 283 -k~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem---~DV~YF~kKL 358 (511) T protein:vir:56 283 -TQKAQQYVNGIMQNVKNRVVYDTQTGQVKNTTNAMSMLEDYYLPRREGSKGTEVSTLPGGQSLGDI---EDVLYFNRKL 358 (511) T ss_pred -chhHHHHHHHHHHhcCceEEEeccCceeccchhhhhhHhhhcccccCCCCccceeeccccCCcChH---HHHHHHHHHH Confidence 1111111222222222211 22 11111 111 1 23566666543 33344 3456788999 Q ss_pred HHHhcCChhhcccccC-C--C---cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeEEE Q lcl|Aclame:pro 381 CAVYQVSPQDVGILEG-S--N---KATAEVMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIKLW 441 (945) Q Consensus 381 A~aFGVPP~lLG~~e~-g--T---~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~f~ 441 (945) .++++||.+-++..+. + + .+.+.-.-..| ...+.-+..++...+...|... ++ ...+.++ T Consensus 359 y~aLnVP~SRl~~e~q~~~f~~Gr~~EItRDEiKF-~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~ 437 (511) T protein:vir:56 359 YKAMRIPTSRAASEDQTGGINFGQGAEITRDELKF-TKFVKRLQTKFETVITDPLKHQLIVNNIITEEEWDANHEKLYVV 437 (511) T ss_pred HHHhCCCcccccCCCCccccccccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEE Confidence 9999999999974322 1 1 11222222233 3345556666666555444222 22 2345666 Q ss_pred eechhhcCH-------HHHHHHHHHHHh--CCCcCHHHHHHH-HhCCCCCCccccccccccccccccchhhccCCCCccc Q lcl|Aclame:pro 442 FKEDDLEKE-------RDWWNIIQGQLN--TGFRSINEARME-KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQL 511 (945) Q Consensus 442 fd~~~l~D~-------kerae~~~~~v~--~GimT~NEaRe~-lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~ 511 (945) |..+..-.. ..|+.+++.+-. +-.++.+=+|+. +.+.-.+ .......-+...+.+.. T Consensus 438 f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~~yi~k~ILr~tDee-------------i~~~~k~I~~E~k~~~~ 504 (511) T protein:vir:56 438 FNQDSYFEEAKELEILNSRMNAMRDIQDYAGKYYSHKYIQKNILRLSDDQ-------------ITAMQSEIDEEETNPRF 504 (511) T ss_pred eeecchHHHHHHHHHHHHHHHHHHHhcchhccccchHHHHHHHhccCHHH-------------HHHHHHHHHHhhcCCCC Confidence 765544322 334444433321 112344444332 2221100 00000000011111111 Q ss_pred ccccCCC Q lcl|Aclame:pro 512 AQAMADQ 518 (945) Q Consensus 512 ~~~~~d~ 518 (945) .++..+- T Consensus 505 ~~~e~~f 511 (511) T protein:vir:56 505 QQDDQGF 511 (511) T ss_pred CCcccCC Confidence 1111010 No 216 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=95.23 E-value=0.00057 Score=38.36 Aligned_cols=274 Identities=12% Similarity=0.023 Sum_probs=120.2 Q ss_pred chhhhhhHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHh----ccCccCChHHHHHH Q lcl|Aclame:pro 111 FFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLE----RPDPYFSEVNSWEY 186 (945) Q Consensus 111 ~~~~~v~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~----rPNp~mT~~eFwet 186 (945) .+++++ ...|++++=-.|.|. ...++--+-+||. --|-..+...-.+. T Consensus 1 ~~~~~~---------------~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (279) T protein:vir:40 1 MSLFNL---------------SRRAEDVSFSTFTVQ-------------DPTTDLLLGKLLGLVSYFDNVDYSEASKLED 52 (279) T ss_pred Cccccc---------------chhhcccceeeeeec-------------CcchhHHHHHHHHHHHHhhcccchhhhhhhh Confidence 112222 233444443333321 1112222333332 13443332221111 Q ss_pred HHHHHHHHHhccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCceEEEEEEeeCCceeeeecccceeeeeeccCCCC Q lcl|Aclame:pro 187 LLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDV 266 (945) Q Consensus 187 li~~Lv~dlLl~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~~~~Yv~~~dG~~~~~~~a~DVIh~r~n~~~d~ 266 (945) +..+. +.|.-.+-++.+ |--.--..+.++... .+.....+...++|-.|+-.+ -| |. T Consensus 53 ----~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~d~fn------------~~vr~~~~~~vtVP~~Dv~Ii-eN--Pl- 109 (279) T protein:vir:40 53 ----LFYWA-LQGKEVYRVWYG--GFKYYAQRVNADQFN------------IVVREPNRREVTIRTNDYEML-LN--PF- 109 (279) T ss_pred ----hhhhh-hccceeehhhhh--hHHHHHhhcCcchhh------------hheecCCcceeEeecchhhhh-hc--ch- Confidence 11111 122211111111 100000001111110 011111222334444444333 12 11 Q ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcc-c Q lcl|Aclame:pro 267 YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDY-T 345 (945) Q Consensus 267 ~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~N-a 345 (945) +|.-+ +....-++.+ .+....++ ..++. ..+++..+. ....++.+++.+..++++..+++ - T Consensus 110 ----v~v~~-ee~~kM~~la--~nai~~KL-D~~~q-Ik~fIKTd~---------d~glee~kekaR~rIk~mlalAk~~ 171 (279) T protein:vir:40 110 ----YGANP-QRFGVMFGMA--SNGIGRRL-DSQAQ-IKIYWKTKV---------SSGLKEVWDRIRERLTQQQQLAREF 171 (279) T ss_pred ----heecc-chhhHHHHHH--Hhhhhhhh-cccce-eeeEEecCc---------chhHHHHHHHHHHHHHHHHHHHHhc Confidence 33321 1222222222 22223333 33444 456665532 12346777788888888887755 4 Q ss_pred CcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 346 QVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGF 425 (945) Q Consensus 346 gkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeL 425 (945) ++..+++.|-+++++..+..-+. .+-.++.++..+..+|||..++ ..+..|.+..+|+..++.|++.+.+..+ T Consensus 172 nGityid~~ddItQL~kDYStsl-k~die~lkS~l~Sq~GinekIL------~GsAtE~q~iAyy~rtVePILkQyek~l 244 (279) T protein:vir:40 172 NGVSVIGSDDDIKQIQPDYSGSL-QNDANLAIEIALSEYGMPRELL------YGQSNEVTIIAFAIQKVLPLLKQHDKNI 244 (279) T ss_pred CCeeeecCCceeEeecccccccc-HHHHHHHHHHHHhhcCCchhhc------cccCchhhhhhHHHhhHHHHHHHhcccc Confidence 77889999999999986654433 4556788899999999999998 3344588999999999999999977643 Q ss_pred HHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCc Q lcl|Aclame:pro 426 DEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWG 483 (945) Q Consensus 426 n~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGG 483 (945) .. .++.. .....+-...|.+ |---...+-+|+... T Consensus 245 iY---~~E~f------------------v~y~ttta~gg~~--~s~~~~~~~~~~~~~ 279 (279) T protein:vir:40 245 IF---NQENF------------------VAYISTTAKGGAI--ESKSSKRDSEPVGND 279 (279) T ss_pred cc---hhhhh------------------hhhheecccCccc--ccccccccCCCCCCC Confidence 32 11110 0011111111211 111112223344322 No 217 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=94.97 E-value=0.0031 Score=34.37 Aligned_cols=429 Identities=10% Similarity=0.048 Sum_probs=175.7 Q ss_pred hhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCcc---------cce-ecccc-----CCcccchhhhh Q lcl|Aclame:pro 52 LAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPE---------SLM-YLPSI-----SDPDAFFLINL 116 (945) Q Consensus 52 ~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~---------sl~-~lps~-----s~p~~~~~~~v 116 (945) .+.+-.-.+.-++ |.+..--++....+...--||. -.+++.. ... ..++. ...+.+.+++- T Consensus 1 m~~~~l~lf~f~~-k~~e~~~~~~~~~~~~s~~~p~---~~dGa~~I~~~~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~ 76 (521) T protein:vir:10 1 MNPIFLKLLQPWM-KDDEKRVQSDLSDRIDSFAVPD---TADGAIEVDKQIDTTAPKTAIVQSVLGYAPKIQNTKDLINQ 76 (521) T ss_pred CCcchhHHhhhhh-hhhhhHHhhhhccCcccccccc---CCCCceeeccCCCccccccchhhhhhccccccchHHHHHHH Confidence 1111000000011 1111000000000000011111 1111110 000 00111 11234556777 Q ss_pred hHHhhhccHHHHHHHHHHHHhhccC-----ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHH Q lcl|Aclame:pro 117 FRKYRFNNDSKLIKVSEIPKKLTSK-----ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMV 191 (945) Q Consensus 117 ~~~~Am~nsaV~aCV~iIA~~IAsL-----P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~L 191 (945) +++. +.+|.|..||+.|.+.+.-. |..|- .++.+...+.+. ........+++--|-..++++. T Consensus 77 YR~m-a~~pEvd~Av~eIvneaiv~d~~~~pV~i~--Ld~~~~s~~iK~-kI~eeF~~Il~ll~F~~~~~~~-------- 144 (521) T protein:vir:10 77 YRSL-SKYHEVDNAIDEIINDAIVQEDNRDTVYLD--LDKTDWNESVKE-MVREEFRTILKLLKFEREGKRH-------- 144 (521) T ss_pred HHHH-hhccchhhHHHhhhcceEEecCCCceEEEE--ecCcccchHHHH-HHHHHHHHHHHHhccchhhhHH-------- Confidence 7777 58899999999999877522 23221 111111111111 1112222333222344455554 Q ss_pred HHHHhccCCeEEEEEecC---CCeEEEEEEcCCceeEEEEcC----CCc------eEEEEEEee--------CCc--eee Q lcl|Aclame:pro 192 LDDILTIDRGAIVKIRDE---QGNLVAITPVDGTTIKPILSE----DTG------IVVGYVQEV--------DGA--IVA 248 (945) Q Consensus 192 v~dlLl~Gna~i~iird~---~G~pveL~pLdPs~Vtv~~d~----dG~------~~~~Yv~~~--------dG~--~~~ 248 (945) ++.++..|..|+.++.+. ...+.+|++|+|..++.++.. .++ ...+|++.. +|+ ... T Consensus 145 fR~WYVDgRi~fHkiid~~~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~~g~~~~~v 224 (521) T protein:vir:10 145 FRRWYVDSRIYFHKMIDPARPKDGIKELRLLDPRNVEYYRVNLKSNENGNDVYKGVKEFFTYGATEDNRYNISGNSNNLV 224 (521) T ss_pred HhhheeeeeEEEEEEeeCCCccccceeeeeeCCcceeeeeeecCCCCCcchhhccceeeeeeccCCCceecCCCCCCcce Confidence 455578889998876653 336889999999999765421 111 111233322 121 112 Q ss_pred eecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHH Q lcl|Aclame:pro 249 HFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQ 328 (945) Q Consensus 249 ~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq 328 (945) .++. |.|++....--+ ...++.+|-+..|...+....-++... -.++=..++-+-|+...-|... ..-.++= T Consensus 225 kI~~-daI~y~hSGL~d-~~~~~i~syLhkAiKp~NQLkm~EDAl-VIYRitRAPeRRvFYIDvGnlp-----k~KAeqY 296 (521) T protein:vir:10 225 QIPI-DAIVYSHSGKVD-IDGKTIVGYLHNVIKPANQLKMLEDAM-VIYRITRAPERRVFYIDVGTMP-----NKKATQH 296 (521) T ss_pred eech-hheeeeccccee-CCCCceeccchhhhHhHHhhHHHHhhH-HHHhhhccccceEEEEecCCCC-----chhHHHH Confidence 3444 444443211111 123566777888887777655555432 3334445666677766543221 1111111 Q ss_pred HHHHHHHHHHHh-----cC--cccCc--ccc----c-----CCCceeeeccC--ChhhHHHHHHHHHHHHHHHHHhcCCh Q lcl|Aclame:pro 329 LESIQRQLQAIM-----MG--DYTQV--PIL----S-----GGKFTWIDFKG--KRRDMQFKELAEFVARKICAVYQVSP 388 (945) Q Consensus 329 ~erlKe~we~~~-----sG--~Nagk--p~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~~~eeIA~aFGVPP 388 (945) ...+...+++.. .| .+..+ .|+ | +.|.+.+.+.- +.-++ +-.+|..+...++++||. T Consensus 297 l~~iM~k~kNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEI~TLpggqnlgem---~DV~YF~kkLy~aLnVP~ 373 (521) T protein:vir:10 297 LNNVMQGLKNRVVYDSSTGKVKNSSNNLAMTEDYWLMRRDGKATTEVSTLPGAQSMGEM---DDVRWFNRKLYESMKIPL 373 (521) T ss_pred HHHHHHhcCceEEEeccCceeccchhhhhhHhhhcccccCCCCccceeeccccCCcChH---HHHHHHHHHHHHHhCCCc Confidence 222222222211 22 11111 111 1 23566666543 33344 445678899999999999 Q ss_pred hhcccccC-CC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeEEEeechhhcC-- Q lcl|Aclame:pro 389 QDVGILEG-SN---KATAEVMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIKLWFKEDDLEK-- 449 (945) Q Consensus 389 ~lLG~~e~-gT---~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~f~fd~~~l~D-- 449 (945) +-++.-.. .+ .+.+.-.-..| ...+.-+..++...+...|... ++ ...+.++|..+..-. T Consensus 374 sRl~~e~~~f~~Gr~~EItRDEikF-~KFI~rLR~rFs~~f~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~El 452 (521) T protein:vir:10 374 SRLPQEGAGVTFGAGNDITRDELQF-TKYIRGLQQQFEPIFLNPLRTNLMLKGKMSVSEWEEQAENIKVVFSKDSYYEEI 452 (521) T ss_pred cccCCCCCceecccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHH Confidence 99864321 11 12222222233 3345556666666555444222 22 234566666554432 Q ss_pred -----HHHHHHHHHHHHh----CCCcCHHHHHHH-HhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCC Q lcl|Aclame:pro 450 -----ERDWWNIIQGQLN----TGFRSINEARME-KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQP 519 (945) Q Consensus 450 -----~kerae~~~~~v~----~GimT~NEaRe~-lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~ 519 (945) +..|+.+++.+-. +-+++.+=+|+. +.+.-.+ . ...+.+- +...+.+-.+ +++ T Consensus 453 Ke~eil~~R~~~l~~~dp~~yvGky~s~dyi~k~ILr~tDee-----i------k~~~k~I--~~E~~~~~~~----~p~ 515 (521) T protein:vir:10 453 KDVEILERRVNLVQTLASAEVTGKYLSHEYVMKNILRMSDED-----I------KTEREKI--DGELKDSVYK----NPE 515 (521) T ss_pred HHHHHHHHHHHHHHhhcCccccccccchHHHHHHHhcCCHhH-----H------HHHHHHH--HHhhhCCCCC----CCc Confidence 2345555554422 224444444432 3332110 0 0000000 0000010000 000 Q ss_pred CCCCCC Q lcl|Aclame:pro 520 SQQGGG 525 (945) Q Consensus 520 ~~~~g~ 525 (945) .+.++- T Consensus 516 ~e~~df 521 (521) T protein:vir:10 516 DPMEEF 521 (521) T ss_pred chhhcC Confidence 000000 No 218 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=94.95 E-value=0.0031 Score=34.34 Aligned_cols=423 Identities=10% Similarity=0.031 Sum_probs=168.8 Q ss_pred CCCcchhhhhhhhhccceeeeeeeeeec-ceeeeccccccccccccCCC--CCcccccCcccceeccccCCcccchhhhh Q lcl|Aclame:pro 40 YPGFKPLLTYRALAWNSTVVYSIIIFRK-NQVLKKEKIIVPYNHQEPPF--KFNLFEYSPESLMYLPSISDPDAFFLINL 116 (945) Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~-n~l~kK~K~i~p~~~r~pp~--~f~L~~~s~~sl~~lps~s~p~~~~~~~v 116 (945) -.-|.-+ -.|-.-+.|-+-..+. +++..++++.++.. +..-. -..++.+.+..+...++..... T Consensus 1 m~~~~~~-----k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~ri~~~~~~y~g~~~~~~~~~~~~~~~------- 67 (508) T protein:vir:15 1 MGLIQRI-----KDLFWKGAAATGVTGSLSKITDDPRISIDPD-EYVRIQTDLDYYSDKLQYIHYQASDGIKK------- 67 (508) T ss_pred CChHHHH-----HHHHHHHHHHhccccchHHhhcccccccCHH-HHHHHHHHHHHhcCCCcccccccCCCCcc------- Confidence 0001000 0010000000000000 11111222222110 00000 0011111111111111100000 Q ss_pred hHHhhhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 117 FRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDIL 196 (945) Q Consensus 117 ~~~~Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlL 196 (945) .+..........+++..|+-+..=|..+- ...+ ...+..|.+++.. | .|+..+ ...+.+.+ T Consensus 68 -~~~~~sln~~~~i~~~~A~lv~~e~~~i~-v~~~---------~~~~e~l~~il~~-n------~f~~~~-~~~~e~a~ 128 (508) T protein:vir:15 68 -KRLKNTINMAKTAARRIASVVFNEKAEIH-VKDN---------NEADKFLNDVLED-N------DFKNKF-EEALEKGV 128 (508) T ss_pred -ccceeecchHHHHHHHHHhhhhCCCceEE-eCCc---------hHHHHHHHHHHHh-c------cHHHHH-HHHHHHHh Confidence 01011112233444555555544343332 1111 0111234445532 2 344443 44556667 Q ss_pred ccCCeEEEEEecCCCeEEEEEEcCCceeEEEEcCCCce------------------EEEEE-E-e-eCCc-ee---eeec Q lcl|Aclame:pro 197 TIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGI------------------VVGYV-Q-E-VDGA-IV---AHFD 251 (945) Q Consensus 197 l~Gna~i~iird~~G~pveL~pLdPs~Vtv~~d~dG~~------------------~~~Yv-~-~-~dG~-~~---~~~~ 251 (945) ..|..++-+..+. |. +.+..++|..+.+...+.|+. +|... + . .+++ .. ..|. T Consensus 129 a~G~~~~k~~~d~-~~-~~i~~v~ad~~~P~~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~ 206 (508) T protein:vir:15 129 ALGGFAMRPYIDG-NH-IKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYK 206 (508) T ss_pred hcCceEEEEEEeC-Ce-eEEEEEcCCeeEEEEEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEe Confidence 7788777766664 33 456777888776654333332 11100 0 0 0110 00 0010 Q ss_pred c----------------------cce----------eeeeec-cCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 252 K----------------------RDV----------VLFRQN-LTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYR 298 (945) Q Consensus 252 a----------------------~DV----------Ih~r~n-~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~ 298 (945) . .++ +|++.. ++......++|+|.+..+...+...........+-|. T Consensus 207 ~~~~~~lG~~v~l~~~~e~~~l~~~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~ 286 (508) T protein:vir:15 207 SDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR 286 (508) T ss_pred cCCchhcCcccchhhcccccCCCcceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHH Confidence 0 000 111110 0111112457999999999888887766666666664 Q ss_pred hCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 299 KGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVAR 378 (945) Q Consensus 299 nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~e 378 (945) .|. +..++ .......++........ . ...+.+-+ .-.++|..++.++....+-++.+..+...+ T Consensus 287 -~~~-~~i~v-~~~~l~~d~~~~~~~~~--------~-~~~~~~~~----~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~ 350 (508) T protein:vir:15 287 -LGQ-KHIAV-QPGMLRFDDEHKPTFDT--------E-QNVYVGVL----SDDNNGLGVKDMTTPIRTVQYKDAIDHFIK 350 (508) T ss_pred -hcc-cceee-chHHhcCCCCCccccCC--------C-CeeEEecc----CCCCCCCceeEeecccChHHHHHHHHHHHH Confidence 443 33332 11111111111000000 0 01111000 001234456667777677788999999999 Q ss_pred HHHHHhcCChhhcccccCCCcccHHHHH-------------HHHHHHHHHHHHHHHHHHHHHh-hccc----------cc Q lcl|Aclame:pro 379 KICAVYQVSPQDVGILEGSNKATAEVMA-------------SLTKAKGLEPLMATISKGFDEV-VSEF----------RN 434 (945) Q Consensus 379 eIA~aFGVPP~lLG~~e~gT~SN~Eqq~-------------~~F~~~tL~Pll~~IEqeLn~k-L~~~----------~~ 434 (945) .|....|++|..+|....+.. ++.+.. ...++.+|..+++.+-...+.. +... .. T Consensus 351 ~~~~~~gls~~~f~~~~~~~~-TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~ 429 (508) T protein:vir:15 351 EFEVQIGLSTGTFSYSNDGVK-TATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQ 429 (508) T ss_pred HHHHHhCCCchhcccccCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccC Confidence 999999999999997655433 333321 1222333333333322221110 1100 01 Q ss_pred cceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccc Q lcl|Aclame:pro 435 EKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQA 514 (945) Q Consensus 435 ~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~ 514 (945) ...+.+.|+.....|.++.++...+++.+|+|+.-+++... +-++..+..- .. +. .. .++ +.+. +.. T Consensus 430 ~~~v~v~f~D~i~~d~~~~~~~~~~~v~aGi~s~e~~i~~~--~g~~deea~~----el--~r-i~-~E~-~~~~--~~~ 496 (508) T protein:vir:15 430 PLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN--YGMTDEQAAE----EL--AK-IQ-SEA-PTDT--FEG 496 (508) T ss_pred CcceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhc--CCCChHHHHH----HH--HH-HH-Hhc-cccC--ccc Confidence 12356788888889999999999999999999999887653 2222221100 00 00 00 000 0000 000 Q ss_pred cCCCCCCCCCCCCCCc Q lcl|Aclame:pro 515 MADQPSQQGGGVDENS 530 (945) Q Consensus 515 ~~d~~~~~~g~~dd~e 530 (945) + ...+.+.++++ T Consensus 497 ~----~~~~~~g~~ge 508 (508) T protein:vir:15 497 G----RSAILNGGDGE 508 (508) T ss_pred c----ccccCCCCCCC Confidence 0 00111111221 No 219 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=94.77 E-value=0.0035 Score=34.02 Aligned_cols=388 Identities=15% Similarity=0.073 Sum_probs=144.2 Q ss_pred cccccccCCCCCc--cc-----cc--Ccccceecc-ccCCcccchhhhhhHHhh-------------------------- Q lcl|Aclame:pro 78 VPYNHQEPPFKFN--LF-----EY--SPESLMYLP-SISDPDAFFLINLFRKYR-------------------------- 121 (945) Q Consensus 78 ~p~~~r~pp~~f~--L~-----~~--s~~sl~~lp-s~s~p~~~~~~~v~~~~A-------------------------- 121 (945) .....+.-+.+++ +. .+ ..+-+..+- ... .. ........+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~-~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ 78 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVREHK-EN-IDNITMGERYYNHHPDILDAPFKRDVNGDYDETKPDW 78 (478) T ss_pred CccccccCCchhhhHHHHHhhhccCChHHHHHHHHHHHH-HH-HHHHHHHHHHhcccccccccchhhhcccccccccccc Confidence 1111111111111 00 00 000000000 000 00 00000000000 Q ss_pred -hccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 122 -FNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDR 200 (945) Q Consensus 122 -m~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gn 200 (945) +..+-...+|+..+.-+-+-|+.+- .+. ......+..++. | +| ......+..+...+|. T Consensus 79 ki~~n~~k~ivd~~~~yl~g~p~~~~---~~~--------~~~~~~l~~~~~--n------~~-~~~~~~~~~~~~~~G~ 138 (478) T protein:vir:10 79 RMYTNYHQNLVDQKVAYAVANPVTFG---VDN--------DKALKQIQHTLN--H------KW-DDKLVDILTAASNKGI 138 (478) T ss_pred eeccchHHHHHHHHhhhhcccCceee---cCC--------hHHHHHHHHHHh--c------cH-HHHHHHHHHHHhhCCe Confidence 1122233344444444434444321 000 000112222332 2 12 2234456678889999 Q ss_pred eEEEEEecCCCeEEEEEEcCCceeEEEEcCC--CceEE--EEEEeeCCc-eeeeecccceeeeeecc------------- Q lcl|Aclame:pro 201 GAIVKIRDEQGNLVAITPVDGTTIKPILSED--TGIVV--GYVQEVDGA-IVAHFDKRDVVLFRQNL------------- 262 (945) Q Consensus 201 a~i~iird~~G~pveL~pLdPs~Vtv~~d~d--G~~~~--~Yv~~~dG~-~~~~~~a~DVIh~r~n~------------- 262 (945) +|..+..+.+|++ .+..++|..+.++.++. +.... +++ ..++. ....+..+.+.+++... T Consensus 139 ~~~~v~~d~~~~~-~~~~~~p~~~~~v~d~~~~~~~~~~ir~~-~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~ 216 (478) T protein:vir:10 139 EWVQPYVDEEGEF-KTFRVPAEQAVPIWTNKERDELQAFIRVY-ELDGAERVEYWTKDDVTFYELKEGQLIPDFYRSEDH 216 (478) T ss_pred EEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEE-eeeCceEEEEEeCCcEEEEEecCCeeeccccccccc Confidence 9998888888876 68889999998877542 33221 121 12221 11222333332221110 Q ss_pred -----------CCCC-------ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhc Q lcl|Aclame:pro 263 -----------TPDV-------YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQL 324 (945) Q Consensus 263 -----------~~d~-------~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~L 324 (945) ++.+ .....|.|.+......++....+.....+.+... +.|-.++ .+.. T Consensus 217 ~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~-~~~~~~~--~g~~---------- 283 (478) T protein:vir:10 217 IQPHYYQGNKLMSWGRVPFIPFKNNPQEVSDLFMYKTIIDALDKRLSDTQNTFDES-VELIYIL--KGYE---------- 283 (478) T ss_pred cccceecccccccCCcceEEEeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh-hCcceee--ecCC---------- Confidence 0000 0012355555554444444333333222222222 2333333 2111 Q ss_pred cHHHHHHHHHHHHHHhcCcccCccccc--C--CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcc Q lcl|Aclame:pro 325 SREQLESIQRQLQAIMMGDYTQVPILS--G--GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKA 400 (945) Q Consensus 325 S~Eq~erlKe~we~~~sG~Nagkp~VL--~--~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~S 400 (945) .+........+.. .+++.+ + ++++|. ........+.+..+...+.|...-++|..-.+.. .++-| T Consensus 284 -~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~~n~S 352 (478) T protein:vir:10 284 -GEDMKDFMHNLKY-------YKAISVAGESGSGVDTI--KVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKF-GNSPS 352 (478) T ss_pred -cccccchhhhhhh-------CceeEecCCCCCcceEE--eecCCHHHHHHHHHHHHHHHHHHhCCcCcCcccc-ccchH Confidence 0011111111111 112222 2 345554 4444556677888889999999999985432211 12222 Q ss_pred cHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcC Q lcl|Aclame:pro 401 TAEVMA-------------SLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRS 467 (945) Q Consensus 401 N~Eqq~-------------~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT 467 (945) . .+.. ...+..+++-.++.+. ..+-.......+.+.|+.....+..+.++++.++ +|+++ T Consensus 353 g-~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~----~~~~~~~d~~~i~i~f~~~~p~~~~e~~~~~~~~--~g~iS 425 (478) T protein:vir:10 353 G-IALKFMYSNLDLKANKLKNKTLTALQELLQYII----DFYRLDVRVQDIEITFNFNVMVNELENSQIAMNS--TGLLS 425 (478) T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCcccccceEEeCCCCCCCHHHHHHHHHHH--hCCCC Confidence 1 1111 1112222222222221 1111222234577888888888888888887765 68898 Q ss_pred HHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccc Q lcl|Aclame:pro 468 INEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSV 532 (945) Q Consensus 468 ~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~ 532 (945) ...+.+.++. +++.+.-+-. .......... +.+........++.+..+++++. T Consensus 426 ~et~i~~~~~--v~d~~~E~~r-----i~~E~~~~~~-----~~~~~~~~~~d~~~~~~~d~~~e 478 (478) T protein:vir:10 426 KETILGNHSW--VQDPVAEMER-----IEQENIELNQ-----QLPDIEEGLNDEQQRQSEDNQSE 478 (478) T ss_pred hHHHHHhCCC--CCCHHHHHHH-----HHHHHHHHHH-----hccccCCCCcccccccCcCCCCC Confidence 7777666543 2221111000 0000000000 00000000000111111111110 No 220 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=94.16 E-value=0.0052 Score=33.10 Aligned_cols=407 Identities=14% Similarity=0.096 Sum_probs=170.1 Q ss_pred cccccccCCCCCcccccCcccceeccccCCcccc--------hhhhhhHHhhhccHHHHHHHHHHHHhh-ccCceEE--- Q lcl|Aclame:pro 78 VPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAF--------FLINLFRKYRFNNDSKLIKVSEIPKKL-TSKELEI--- 145 (945) Q Consensus 78 ~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~--------~~~~v~~~~Am~nsaV~aCV~iIA~~I-AsLP~~V--- 145 (945) .+.++|-=....+++.+. ...|+.. -.+.++...+.++..=++.|. ..++- -+.||.+ T Consensus 1 ~~~~~~~~~~~~~~~~g~---------~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~l-rg~~~~~~r~~~~ps~ 70 (527) T protein:vir:10 1 MGQDKRQYGSTQQLRAGE---------ANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVIL-RGGDEGDQRPIYVPNG 70 (527) T ss_pred CCccccccCCCcCcCCcc---------ccCcccCCHHHHHHHHHHHHHHHHhcCchhheeeec-CCccccccceeeehhh Confidence 455554322222222221 1112210 111122222211110000000 00000 0011110 Q ss_pred -------EEeccCcccccccch-hhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC---CCeEE Q lcl|Aclame:pro 146 -------YKHIEDKHVNYYLKR-IRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE---QGNLV 214 (945) Q Consensus 146 -------yRrtedg~ee~~~r~-~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~---~G~pv 214 (945) ++-...|-+...++. +.....+..+..+ +-|.....+.-.+....|.+.+.+..|. .|.-+ T Consensus 71 ~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~--------e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~ 142 (527) T protein:vir:10 71 EKLIEAKMRFLGQGLKWEFSKKDAKVDDAIKVLFDR--------ENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) T ss_pred HHhhCCcceeeccCccccccchhHHHHHHHHHHHHH--------hhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCc Confidence 111111111000000 0111111111222 2233344555566677777777777763 34456 Q ss_pred EEEEcCCceeEEEEcCCCceEE-EE--E--E--------------------e--------eCCceeeee----------- Q lcl|Aclame:pro 215 AITPVDGTTIKPILSEDTGIVV-GY--V--Q--------------------E--------VDGAIVAHF----------- 250 (945) Q Consensus 215 eL~pLdPs~Vtv~~d~dG~~~~-~Y--v--~--------------------~--------~dG~~~~~~----------- 250 (945) .+..++|..+.++.++++.... ++ + + . ..|..-.+. T Consensus 143 ~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~ 222 (527) T protein:vir:10 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR 222 (527) T ss_pred eEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccc Confidence 8999999988888776553211 11 0 0 0 001000000 Q ss_pred ---c----------ccc-------------eeeeeeccCCCCccCcccccHHHHHHHHHHHHHHH---HHHHHHHHHhCC Q lcl|Aclame:pro 251 ---D----------KRD-------------VVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFI---DKGNLDYYRKGG 301 (945) Q Consensus 251 ---~----------a~D-------------VIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aa---ee~~a~~F~nnG 301 (945) + ... ++|+. +.++... -.|.|.++-....+.....+ ...+.. | .| T Consensus 223 ~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~-t~p~~~~--~WG~S~La~ll~l~deLn~~~Td~s~is~-~--sG 296 (527) T protein:vir:10 223 PESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFR-GHPIMNA--MFGRSGLAGLESLIASVNQTMTDEDLIMV-F--GG 296 (527) T ss_pred cccccchhhhhhhcCceeeecccCCCCccceEeec-CCCcccc--ccChhhHhHHHHHHHHHhhhhhHHHHHHH-H--hC Confidence 0 000 24552 2222222 25777776555544443222 332332 2 34 Q ss_pred CCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKIC 381 (945) Q Consensus 302 a~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA 381 (945) .|-.++.--.+.+. .++.++ |. - ..|.++-|+++.++..+...+.-..+...+....+.|+ T Consensus 297 -~Pi~~~tg~~~vd~----~G~~~~---------~~---V--gPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~ 357 (527) T protein:vir:10 297 -LGFYATDSAPPRDS----RGNMVP---------WT---I--SPLGMVEHGQNNKIYRVNGVASLEPSQTHMTKAEEAMQ 357 (527) T ss_pred -Cceeeecccccccc----cCCcCc---------cc---c--CCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHH Confidence 34333321111000 000000 00 0 11233447888899888877666667788899999999 Q ss_pred HHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHhhcccc-cccee Q lcl|Aclame:pro 382 AVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKG----------------------FDEVVSEFR-NEKDI 438 (945) Q Consensus 382 ~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqe----------------------Ln~kL~~~~-~~~g~ 438 (945) ..-++|.+-+|..+.++-.+. - -++-.+.|++.+.+.. ......... ....+ T Consensus 358 ~vA~~PavA~G~vD~s~~~SG-~----ALeL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v 432 (527) T protein:vir:10 358 QTKGIPDIAVGVVDAAVAESG-I----ALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTV 432 (527) T ss_pred HhhcCCeeeeccccCCcCcHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccce Confidence 999999999996665542221 1 1222344443322111 111111111 11245 Q ss_pred EEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCC-CCCCccccccccccccccccchhhccCCCCcccccccCC Q lcl|Aclame:pro 439 KLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLE-PVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMAD 517 (945) Q Consensus 439 ~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlp-PveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d 517 (945) .+.|-.....|.++..+...+++++|+++.--+-++++-- -+++.++-+... ..-.-.++...+++..+-.++++.+ T Consensus 433 ~ivf~p~lP~D~~avie~v~tL~~aGi~S~~tAv~~L~~~~g~eD~E~E~~~I--~~era~~a~a~a~A~~~~~a~~~~~ 510 (527) T protein:vir:10 433 TITFRDPKPVNSEKRFNQLLQLWEAGLIPAKKLTEELSKIMGFELTEEDFKQA--TEDKKTQGIAQAEAADPFGAQMAAE 510 (527) T ss_pred EEEecccCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHhccCCCChHHHHHHH--HHHHHHHhHHhhhhcCchhhhhccc Confidence 7888888888999999999999999999999988887321 133332221110 0000112223333333333332222 Q ss_pred CCCCCCCCCCCCccccc Q lcl|Aclame:pro 518 QPSQQGGGVDENSSVPS 534 (945) Q Consensus 518 ~~~~~~g~~dd~e~~~s 534 (945) ..-..+...+....+|- T Consensus 511 ~g~~~~~~d~~~~~~~~ 527 (527) T protein:vir:10 511 QGIPDEEDDQALNGQPL 527 (527) T ss_pred cCCCCCCcccccCCCCC Confidence 22211111122222222 No 221 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=93.99 E-value=0.0057 Score=32.87 Aligned_cols=407 Identities=13% Similarity=0.093 Sum_probs=169.9 Q ss_pred cccccccCCCCCcccccCcccceeccccCCcccc--------hhhhhhHHhhhccHHHHHHHHHHHHhh-ccCceEE--- Q lcl|Aclame:pro 78 VPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAF--------FLINLFRKYRFNNDSKLIKVSEIPKKL-TSKELEI--- 145 (945) Q Consensus 78 ~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~--------~~~~v~~~~Am~nsaV~aCV~iIA~~I-AsLP~~V--- 145 (945) .+.++|-=....+++.+. ...|+.. -.+.++...+.++..=++.|. ..++- -+.||.+ T Consensus 1 ~~~~~~~~~~~~~~~~g~---------~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~l-rg~~~~~~r~~~~ps~ 70 (527) T protein:vir:10 1 MGQDKRQYGSTQQLRAGE---------ANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVIL-RGGDEGDQRPIYVPNG 70 (527) T ss_pred CCccccccCCCcCcCCcc---------ccCcccCCHHHHHHHHHHHHHHHHhcCchhheeeec-CCccccccceeeehhh Confidence 455554322222222221 1112210 111122222211110000000 00000 0011110 Q ss_pred -------EEeccCcccccccch-hhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC---CCeEE Q lcl|Aclame:pro 146 -------YKHIEDKHVNYYLKR-IRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE---QGNLV 214 (945) Q Consensus 146 -------yRrtedg~ee~~~r~-~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~---~G~pv 214 (945) ++-...|-+...++. +.....+..+..+ +-|.....+.-.+....|.+.+.+..|. .|.-+ T Consensus 71 ~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~--------e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~ 142 (527) T protein:vir:10 71 EKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDR--------ENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) T ss_pred HHhhCCcceeeccCccccccchhHHHHHHHHHHHHH--------hhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCc Confidence 111111111000000 0111111111122 2233344555566677777777777763 34456 Q ss_pred EEEEcCCceeEEEEcCCCceEE-EE--E--Ee----------------------------eCCceeeee----------- Q lcl|Aclame:pro 215 AITPVDGTTIKPILSEDTGIVV-GY--V--QE----------------------------VDGAIVAHF----------- 250 (945) Q Consensus 215 eL~pLdPs~Vtv~~d~dG~~~~-~Y--v--~~----------------------------~dG~~~~~~----------- 250 (945) .+..++|..+.++.++++.... ++ + +. ..|..-.+. T Consensus 143 ~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~ 222 (527) T protein:vir:10 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR 222 (527) T ss_pred eEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccc Confidence 8999999988888776553211 11 0 00 001000000 Q ss_pred ---c----------ccc-------------eeeeeeccCCCCccCcccccHHHHHHHHHHHHHHH---HHHHHHHHHhCC Q lcl|Aclame:pro 251 ---D----------KRD-------------VVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFI---DKGNLDYYRKGG 301 (945) Q Consensus 251 ---~----------a~D-------------VIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aa---ee~~a~~F~nnG 301 (945) + ... ++|+. +.++... -.|.|.++-....+.....+ ...+.. | .| T Consensus 223 ~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~-t~p~~~~--~WG~S~La~ll~l~deLn~~~Td~s~is~-~--sG 296 (527) T protein:vir:10 223 PESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFR-GHPIMNA--MFGRSGLAGLESLIASVNQTMTDEDLIMV-F--GG 296 (527) T ss_pred cccccchhhhhhhcCceeeecccCCCCccceEeec-CCCcccc--ccChhhHhHHHHHHHHHhhhhhHHHHHHH-H--hC Confidence 0 000 24552 2222222 25777776555544443222 332332 2 34 Q ss_pred CCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKIC 381 (945) Q Consensus 302 a~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA 381 (945) .|-.++.--.+.+. .++.++ |. - ..|.++-|+++.++..+...+.-..+...++...+.|+ T Consensus 297 -~Pi~~~tg~~~vd~----~G~~~~---------~~---V--gPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~ 357 (527) T protein:vir:10 297 -LGFYATDSAPPRDS----RGNMVP---------WT---I--SPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQ 357 (527) T ss_pred -Cceeeecccccccc----cCCcCc---------cc---c--CCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHH Confidence 34333321111000 000000 00 0 11233447888899888877666667788899999999 Q ss_pred HHhcCChhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHhhcccc-cccee Q lcl|Aclame:pro 382 AVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKG----------------------FDEVVSEFR-NEKDI 438 (945) Q Consensus 382 ~aFGVPP~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqe----------------------Ln~kL~~~~-~~~g~ 438 (945) ..-++|.+-+|..+.++-.+. - -++-.+.|++.+.+.. ......... ....+ T Consensus 358 ~vA~~PavA~G~vD~s~~~SG-~----ALeL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v 432 (527) T protein:vir:10 358 QTKGIPDIAVGVVDAAVAESG-I----ALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTV 432 (527) T ss_pred HhhcCCeeeeccccCCcCcHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccce Confidence 999999999996665542221 1 1222344443322111 111111111 11245 Q ss_pred EEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCC-CCCCccccccccccccccccchhhccCCCCcccccccCC Q lcl|Aclame:pro 439 KLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLE-PVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMAD 517 (945) Q Consensus 439 ~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlp-PveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d 517 (945) .+.|-.....|.++..+...+++++|+++.--+-++++-- -+++.++-+..- ..-.-.++...+++..+-.++++.+ T Consensus 433 ~ivf~p~lP~D~~avie~v~tL~~aGiiS~etAv~~L~~~~g~eD~E~E~~~I--~~era~~a~a~a~a~~~~~a~~~~~ 510 (527) T protein:vir:10 433 TITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQA--TEDKKTQGIAQAEAADPFGAQMAAE 510 (527) T ss_pred EEEecccCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHhccCCCchHHHHHHH--HHHHHHHhHHhhhhcCchhhhhccc Confidence 7888888888999999999999999999999988887321 133332221110 0000112223333333322332222 Q ss_pred CCCCCCCCCCCCccccc Q lcl|Aclame:pro 518 QPSQQGGGVDENSSVPS 534 (945) Q Consensus 518 ~~~~~~g~~dd~e~~~s 534 (945) ..-..+...+....+|- T Consensus 511 ~g~~~~~~d~~~~~~~~ 527 (527) T protein:vir:10 511 QGIPDEEDDQALNGQPL 527 (527) T ss_pred cCCCCCCcccccCCCCC Confidence 22211111122222222 No 222 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=92.37 E-value=0.012 Score=31.18 Aligned_cols=441 Identities=12% Similarity=0.084 Sum_probs=186.0 Q ss_pred cCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCC--CCCcccccCcccceec----cccCCcccc Q lcl|Aclame:pro 38 KDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPP--FKFNLFEYSPESLMYL----PSISDPDAF 111 (945) Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp--~~f~L~~~s~~sl~~l----ps~s~p~~~ 111 (945) -.++||--+|..-. -|.... =+-+..++-++-.+++|.....-. ...............- .-....+.+ T Consensus 1 ~~~~~~~~~l~~~~-~~~~~d----~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~y~~~e~~~~~~~ 75 (524) T protein:vir:98 1 MNFLGFGNVLSFFK-NFARED----EIELEQQLKNDTGSVAPPKNNDGAYEIETDLNNQKYAGVFQQFYSGQDPAIQNKE 75 (524) T ss_pred CCCcchhhHHHHhh-hhhhhh----hhhHhhhhcCCcccccCCCCCCCceeecCCCCcceecceeeeeccccccccchHH Confidence 56777776665422 232211 011222232233222221111000 0000000011111100 111112355 Q ss_pred hhhhhhHHhhhccHHHHHHHHHHHHhhcc-----CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHH Q lcl|Aclame:pro 112 FLINLFRKYRFNNDSKLIKVSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEY 186 (945) Q Consensus 112 ~~~~v~~~~Am~nsaV~aCV~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwet 186 (945) .+++.+++. +.+|.|..||+.|.+.+.- -|..|- .++.....+.+.. .......+++--|-..++++. T Consensus 76 eLI~~YR~m-a~~pEvd~Av~eIVneaIv~~~~~~pV~l~--L~~~~~s~~iK~k-I~eeF~~Il~ll~F~~~~~~~--- 148 (524) T protein:vir:98 76 QLINTYRGI-MSYPEVENAVSEIIDDAIVNEQGKDIITMD--LAKTNFSKAIQDK-IVEEFDNVLNIYDFDNMGARL--- 148 (524) T ss_pred HHHHHHHHH-hhccchhhHHHhhhcceeEecCCCceEEEE--ecccccchHHHHH-HHHHHHHHHHHhccchhhhHH--- Confidence 567777877 5889999999999987742 122221 1111111111111 112222333222344455554 Q ss_pred HHHHHHHHHhccCCeEEEEEecCCCe--EEEEEEcCCceeEEEEc-----CC-Cce-----EEEEEEeeC-------C-- Q lcl|Aclame:pro 187 LLGMVLDDILTIDRGAIVKIRDEQGN--LVAITPVDGTTIKPILS-----ED-TGI-----VVGYVQEVD-------G-- 244 (945) Q Consensus 187 li~~Lv~dlLl~Gna~i~iird~~G~--pveL~pLdPs~Vtv~~d-----~d-G~~-----~~~Yv~~~d-------G-- 244 (945) ++.++..|..|+.++.+.+.. +.+|++|+|..++.++. .+ |.. ...|+|.+. | T Consensus 149 -----fR~WYVDgRi~fhkiid~~~~kGI~ELr~lDPr~i~~vr~~~~~~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~ 223 (524) T protein:vir:98 149 -----FRDWYVDSRIYFHKIMHKDESKGIRELRQLDPRCMELIRESITETLDGGVKVFRGYREFFVYSAPKAGYTYNGQI 223 (524) T ss_pred -----HhhhhhcceeEEEEEEcCCCCcceeeeeeeCCccceeeeeccccccccchhhccceeeeeeeccCCCccccccce Confidence 445577899999888664443 89999999999976541 12 211 112333211 1 Q ss_pred ---ceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccc Q lcl|Aclame:pro 245 ---AIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIY 321 (945) Q Consensus 245 ---~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~ 321 (945) +....++.+.|+|....--+.. +++ +|-+..|...+....-.+.. .-.++=..++-+-|+...-|.. | T Consensus 224 ~~~~~~ikI~~dAIvy~hSGL~d~~--~~i-isyLhkAiKp~NQLkm~EDA-lVIYRitRAPeRRvFYIDvGnl-----P 294 (524) T protein:vir:98 224 YQANQKIKIPRSAIVYAHSGLEDCS--NNI-IGYLHRAVKPANQLRLLEDA-MVIYRITRAPERRVFYIDVGQM-----G 294 (524) T ss_pred ecCCCceeechhheeeeccCcccCC--CCe-eeehhHhhHhHHhhHHHHhh-HHHHhhhccccceEEEEecCCC-----C Confidence 1124456666777544332222 122 35566666666654444443 2333444566677776654321 1 Q ss_pred hhccHHHHHHHHHHHHHH-----hcC--cccCc--ccc----c-----CCCceeeeccC--ChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 322 PQLSREQLESIQRQLQAI-----MMG--DYTQV--PIL----S-----GGKFTWIDFKG--KRRDMQFKELAEFVARKIC 381 (945) Q Consensus 322 ~~LS~Eq~erlKe~we~~-----~sG--~Nagk--p~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~~~eeIA 381 (945) ..-.++=...+...+++. ..| .+..+ .|+ | +.|.+.+.+.- +.-++ +-.++..+... T Consensus 295 k~KAeqYl~~im~k~kNklvYDa~TGevrddrk~msMlEDyWLpRReGgrgTEItTLpggqnlgem---~DV~YF~kkLy 371 (524) T protein:vir:98 295 GNKATQYVNNIAQGLKNRVVYDARTGTVKNQQNNLSMTEDYWLMRRDGKAITEVSTLPGGQNFSDM---DDIKWFNRKLY 371 (524) T ss_pred chhHHHHHHHHHHhcCceeEeeccCceeeccccccchhhhhcccccCCCCccceeeccccCCcChH---HHHHHHHHHHH Confidence 111112222222222211 123 11111 221 1 23566666543 33344 34567889999 Q ss_pred HHhcCChhhcccccCC-C---cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeEEEeec Q lcl|Aclame:pro 382 AVYQVSPQDVGILEGS-N---KATAEVMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIKLWFKE 444 (945) Q Consensus 382 ~aFGVPP~lLG~~e~g-T---~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~f~fd~ 444 (945) ++++||.+-++..+.+ + .+.+.-.-..| ...+.-+..++...+...|... ++ ...+.++|.. T Consensus 372 ~aLnVP~sRl~~~~~~f~~Gr~~EItRDEiKF-~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~ 450 (524) T protein:vir:98 372 EALRVPLSRMPRDDGGMQIGGGGEITRDELKF-SKFIRTLQIQFSPVLSDPLKTNLIAKKIITEDEWEENVSKISFVFQQ 450 (524) T ss_pred HHhCCCceeccCCCCccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEee Confidence 9999999999643321 1 12222222233 3344555556555555433221 11 2235666665 Q ss_pred hhhcC-------HHHHHHHHHHHHh-CC-CcCHHHHHHH-HhCCCCCCccccccccccccccccchhhccCCCCcccccc Q lcl|Aclame:pro 445 DDLEK-------ERDWWNIIQGQLN-TG-FRSINEARME-KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQA 514 (945) Q Consensus 445 ~~l~D-------~kerae~~~~~v~-~G-imT~NEaRe~-lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~ 514 (945) +..-. +..|+.+++.+-. .| +++.+=+|+. +.+.-.+ .......-+.....+-. T Consensus 451 Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi~k~ILr~tDee-------------i~~~~k~I~~E~k~~~~--- 514 (524) T protein:vir:98 451 DSYYAEVKDIEILERRLNLMSQVEGVVGKYVSHKYIMKEILRMSDED-------------IDEQAKLIEEESKEERF--- 514 (524) T ss_pred cchHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHhccCHHH-------------HHHHHHHHHHHHhCCCC--- Confidence 54432 2344444444322 12 3444444432 3221100 00000000000000000 Q ss_pred cCCCCCCCCCC Q lcl|Aclame:pro 515 MADQPSQQGGG 525 (945) Q Consensus 515 ~~d~~~~~~g~ 525 (945) .+++.+.++- T Consensus 515 -~~p~~e~~~f 524 (524) T protein:vir:98 515 -KNPEAEEENF 524 (524) T ss_pred -cCCccccccC Confidence 0111110100 No 223 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=91.19 E-value=0.017 Score=30.28 Aligned_cols=406 Identities=14% Similarity=0.067 Sum_probs=151.8 Q ss_pred eeeeeecceeeeccccccccccccCCCCC---cccc-cCcc--cceec----ccc----CCcccc----hhhhhhHHhhh Q lcl|Aclame:pro 61 SIIIFRKNQVLKKEKIIVPYNHQEPPFKF---NLFE-YSPE--SLMYL----PSI----SDPDAF----FLINLFRKYRF 122 (945) Q Consensus 61 ~~~~~k~n~l~kK~K~i~p~~~r~pp~~f---~L~~-~s~~--sl~~l----ps~----s~p~~~----~~~~v~~~~Am 122 (945) -+-|+.-+.=.+-++.+........+..- .+.. ...+ .+..+ .+. ..+... .....-....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki 80 (474) T protein:vir:96 1 MIVIFWPNEKPYHERVVEQIKPKYETQEEMIIRLINDHKPKIDDITVGERYYNHDPDVLRLAPKLDNKGEIDPLKPDWRM 80 (474) T ss_pred CeeeccCCCchhhhhHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhccchhcccccccccccchhc Confidence 22222222200000000000000000000 0000 0000 00000 000 000000 00000000001 Q ss_pred ccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeE Q lcl|Aclame:pro 123 NNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGA 202 (945) Q Consensus 123 ~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~ 202 (945) ..+-....|+..++-+-+-|..+- .+. ......+..++. |. +. .....+..+...+|.+| T Consensus 81 ~~n~~~~Ivd~~~~~l~g~p~~~~---~~d--------~~~~~~l~~~~~--n~------~~-~~~~~~~~~~~~~G~~~ 140 (474) T protein:vir:96 81 FTNYHQNLVDQKVAYAVANPVTFS---SDD--------DKSLKTIQEVLN--HK------WD-DKLVDILTAASNKGIEW 140 (474) T ss_pred ccchHHHHHHhhhhhhcccCceee---cCc--------hHHHHHHHHHHh--cC------HH-HHHHHHHHHHHhcCeeE Confidence 122333344444444444444431 000 011123334443 21 11 12344567778899999 Q ss_pred EEEEecCCCeEEEEEEcCCceeEEEEcCC--CceE--EEEEEeeCCce-eeeecccceeeeeec---------------- Q lcl|Aclame:pro 203 IVKIRDEQGNLVAITPVDGTTIKPILSED--TGIV--VGYVQEVDGAI-VAHFDKRDVVLFRQN---------------- 261 (945) Q Consensus 203 i~iird~~G~pveL~pLdPs~Vtv~~d~d--G~~~--~~Yv~~~dG~~-~~~~~a~DVIh~r~n---------------- 261 (945) ..+..+..|++ .+..++|..+.++.++. +... .+|+ ..++.. ...+....+.++... T Consensus 141 ~~~y~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~vr~~-~~~~~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~ 218 (474) T protein:vir:96 141 LQPYIDENGEF-KTFRVPAEQAIPIWTNKERDTLKAFIRYY-RLDGAERVEYWTDSDVTYYEYQDGILIPDYYHGEEHIQ 218 (474) T ss_pred EEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEE-eecCceEEEEEeCCeEEEEEecCCceeecccccccccc Confidence 88888888886 48889999998887642 2221 1111 122111 111222222221110 Q ss_pred --------cCCCCc-------cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccH Q lcl|Aclame:pro 262 --------LTPDVY-------MYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSR 326 (945) Q Consensus 262 --------~~~d~~-------~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~ 326 (945) .++.+. ....|.|-+......++....+....++.+... +.|-.++ .+... T Consensus 219 ~~~~~~~~~~~~g~iPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~-~~~~lv~--~g~~~----------- 284 (474) T protein:vir:96 219 SHYYVGNKRVSWGRVPFIPFKNNPQEMSDLFMYKTIIDAMDKRLSDTQNTFDES-TELIYIL--KGYEG----------- 284 (474) T ss_pred ccccccccccCCCceeEEEeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh-ccceeee--ecCCc----------- Confidence 000000 012355556555555554444433334444332 3444343 22110 Q ss_pred HHHHHHHHHHHHHhcCcccCcccccC-CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH Q lcl|Aclame:pro 327 EQLESIQRQLQAIMMGDYTQVPILSG-GKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM 405 (945) Q Consensus 327 Eq~erlKe~we~~~sG~Nagkp~VL~-~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq 405 (945) +....+...+ ...+++.++ +|.++..++.......+.+..+...+.|+..-++|..-.+. ..++-|. .+. T Consensus 285 ~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~-~~~n~Sg-~Al 355 (474) T protein:vir:96 285 QDLDEFMRNL-------KYYKAINVDGDGSGVDTIQIEVPVQSSKEYLDMLRDYVIEFGQGVDFQQDK-FGNSPSG-IAL 355 (474) T ss_pred ccccchhhhh-------hcCceEEecCCCCceeEEeecCChHHHHHHHHHHHHHHHHHhCCccccccc-cccccHH-HHH Confidence 0111111111 112334443 45555555555555666788889999999999999654321 1122221 121 Q ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHH Q lcl|Aclame:pro 406 A-------------SLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEAR 472 (945) Q Consensus 406 ~-------------~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaR 472 (945) . ...+...++..++.|... +-.......+.+.|+.....+..+.+++ +.++|+++...++ T Consensus 356 ~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~----~~~~~~~~~i~i~f~~~~p~~~~e~~~~---~~~ag~iS~et~~ 428 (474) T protein:vir:96 356 KFMYSNLDLKANKLKNKTLTALQELLQYIIDF----YKLNIKVQDVEITFNFNVMVNELEQSQI---GVQSQYLSKETVV 428 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCcccceeeEEeccCCCcCHHHHHHH---HHhcCCCchHHHH Confidence 1 112222222222222211 1112223356788888877777766665 4567999998888 Q ss_pred HHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccc Q lcl|Aclame:pro 473 MEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPS 534 (945) Q Consensus 473 e~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~s 534 (945) +.++. +++.+.-+- .......... +..+ ....+. .++..++. ..+. T Consensus 429 ~~~~~--v~d~~~E~~-----ri~~E~~e~~-~~~~----~~~~~~---~~~~~d~~-~e~~ 474 (474) T protein:vir:96 429 TNHPW--VDDPVAELE-----RIEQDNIDFN-KQLP----PLEGDA---NGRAQDNE-SETN 474 (474) T ss_pred HhCCC--CCCHHHHHH-----HHHHHHHHHH-hccc----cccccc---ccccCCCc-ccCC Confidence 87643 332221110 0111111110 1001 111111 11111111 1111 No 224 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=90.02 E-value=0.023 Score=29.56 Aligned_cols=437 Identities=12% Similarity=0.113 Sum_probs=175.2 Q ss_pred CCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCc----ccceec--ccc-CCcccc Q lcl|Aclame:pro 39 DYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSP----ESLMYL--PSI-SDPDAF 111 (945) Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~----~sl~~l--ps~-s~p~~~ 111 (945) -+|- |..-+ -|-+. .+-.+ ..++.++.-++++...-.-........+.+ ...++. ..- ...+.+ T Consensus 1 ~~~~----l~~~~-~~~~~---d~~~~-~e~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~~~g~~~~~~~~e~~~~~~~ 71 (521) T protein:vir:65 1 MFSR----LKMLA-RWADF---DNDKY-EEQIKDKAESIAAPKNNDGATEVEINDNSPASSWNSLTQQFYSTDQKISTTK 71 (521) T ss_pred Cccc----hhhhh-hccCc---hhhHH-HhhhccCCCcccCCCCCCCceeecccCCccccccccceeeeccccchhhhHH Confidence 1111 11000 12110 00000 222222222221111111000010000111 011110 000 111344 Q ss_pred hhhhhhHHhhhccHHHHHHHHHHHHhhcc-----CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHH Q lcl|Aclame:pro 112 FLINLFRKYRFNNDSKLIKVSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEY 186 (945) Q Consensus 112 ~~~~v~~~~Am~nsaV~aCV~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwet 186 (945) .+++-+++. +.+|.|..||+.|.+.+.- -|..|- .++.....+.+.. .......+++--|-..++++. T Consensus 72 eLI~~YR~m-a~~pEvd~Av~eIVneaiv~d~~~~pV~l~--L~~~~~s~~iK~k-I~eeF~~Il~ll~F~~~~~~~--- 144 (521) T protein:vir:65 72 QLVNTYRGL-MNNHEVENAVQNIVNDAIVFEEGHEVVSLN--LEATGFSESVKER-IHEEFKDLLNTIQFDRRGQDM--- 144 (521) T ss_pred HHHHHHHHH-hhccchhhHHHHhhcceeEecCCCceEEEE--ecccccchHHHHH-HHHHHHHHHHHhccchhhhHH--- Confidence 466777776 5889999999999987752 233221 1111111111111 112222333222344455554 Q ss_pred HHHHHHHHHhccCCeEEEEEecC--CCeEEEEEEcCCceeEEEEc-----CCCc-----eEEEEEEeeCC---------- Q lcl|Aclame:pro 187 LLGMVLDDILTIDRGAIVKIRDE--QGNLVAITPVDGTTIKPILS-----EDTG-----IVVGYVQEVDG---------- 244 (945) Q Consensus 187 li~~Lv~dlLl~Gna~i~iird~--~G~pveL~pLdPs~Vtv~~d-----~dG~-----~~~~Yv~~~dG---------- 244 (945) ++.++..|..|+.++.+. ...+.+|++|+|..++.++. ..|. ....|.|.+.+ T Consensus 145 -----fR~WYVDgRi~fhkiid~~pk~GI~ELr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~ 219 (521) T protein:vir:65 145 -----FRRWYVDSRIFFHKIIGKNPKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVF 219 (521) T ss_pred -----HhhhhhcceeEEEEEEcCCccccceeeeeeCCcceeeeeeecccccCCcceecceeeeeeeecCCcceeccceee Confidence 445577899999888553 35689999999999987543 1121 11223333211 Q ss_pred --ceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccch Q lcl|Aclame:pro 245 --AIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYP 322 (945) Q Consensus 245 --~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~ 322 (945) +....+ +.+.|++..-.- .+...+.=+|-+..|...+....-++.. .-.++=..++-+-|....-|.. |. T Consensus 220 ~~~~~vkI-~~dAI~y~hSGl-~d~~~~~i~syLhkAiKp~NQLkm~EDA-lVIYRitRAPeRRvFYIDvGnl-----Pk 291 (521) T protein:vir:65 220 SPNSRVKI-PRSAITYAHSGL-MDCDDKYIIGYLHRAVKPANQLKLLEDA-MVVYRITRAPERRVFFIDTGNM-----NN 291 (521) T ss_pred cCCcceee-chhheeeeeccc-eeCCCCeeeecchhhhHhHHhhHHHHhh-HHHHhhhccccceEEEEecCCC-----Cc Confidence 112222 334444422111 1111223345577777666655444443 2333444566677777654322 21 Q ss_pred hccHHHHHHHHHHHHH-----HhcCc--cc--Ccccc----c-----CCCceeeecc--CChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 QLSREQLESIQRQLQA-----IMMGD--YT--QVPIL----S-----GGKFTWIDFK--GKRRDMQFKELAEFVARKICA 382 (945) Q Consensus 323 ~LS~Eq~erlKe~we~-----~~sG~--Na--gkp~V----L-----~~G~k~~pLs--~sp~D~QflE~rk~~~eeIA~ 382 (945) .-.++=...+...+++ +..|. +. +..|+ | +.|.+.+.+. .+.-+++ -.++..+...+ T Consensus 292 ~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~ 368 (521) T protein:vir:65 292 RKAAQHMNSVAQSFKNRVVYDASTGKLKNQQANLSMTEDYWLQRRDGKAITDVTTLPGASGMSDID---DIRYFNRKLYE 368 (521) T ss_pred hhHHHHHHHHHHhcCceeEeecccccccccccccchhhhhcccccCCCCccceeecccCCCcChHH---HHHHHHHHHHH Confidence 1122222233333322 11231 11 12222 1 2356666654 3344444 44578899999 Q ss_pred HhcCChhhcccccCCC-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeEEEeec Q lcl|Aclame:pro 383 VYQVSPQDVGILEGSN-----KATAEVMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIKLWFKE 444 (945) Q Consensus 383 aFGVPP~lLG~~e~gT-----~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~f~fd~ 444 (945) +++||.+-++..+.+. .+.+.-.-..| ...+.-+..++...+...|... ++ ...+.++|.. T Consensus 369 aLnVP~sRl~~e~~~~~~~gr~~EItRDEiKF-~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~ 447 (521) T protein:vir:65 369 ALRVPLSRSNLSDANMVIGGDGSEITRDELEF-SKFIRTLQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHR 447 (521) T ss_pred HhCCCceeccCCCCcceeccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEeee Confidence 9999999986443322 12222222233 3345555566655555433221 11 2235666665 Q ss_pred hhhcC-------HHHHHHHHHHHHh--CCCcCHHHHHHH-HhCCCCCCccccccccccccccccchhhccCCCCcccccc Q lcl|Aclame:pro 445 DDLEK-------ERDWWNIIQGQLN--TGFRSINEARME-KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQA 514 (945) Q Consensus 445 ~~l~D-------~kerae~~~~~v~--~GimT~NEaRe~-lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~ 514 (945) +..-. +..|+.+++.+-. +-.++.+=+|+. +.+.-.+ .......-+...+.+-.+ T Consensus 448 Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~S~dyi~k~ILr~tDee-------------i~~~~k~I~~E~~~~~~~-- 512 (521) T protein:vir:65 448 DSYYTEVKDAEILERRIGLIERITPYIGKYFSNQTVMRDILKYTDDQ-------------MDTEKKQIEEEANDPRFK-- 512 (521) T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHH-------------HHHHHHHHHHhhhCCCCC-- Confidence 54432 2344444444322 113344444432 3221100 000000000011111111 Q ss_pred cCCCCCCCCCC Q lcl|Aclame:pro 515 MADQPSQQGGG 525 (945) Q Consensus 515 ~~d~~~~~~g~ 525 (945) +++.+.++- T Consensus 513 --~p~~~~~~f 521 (521) T protein:vir:65 513 --QTPDEIEDF 521 (521) T ss_pred --CCcccccCC Confidence 111000111 No 225 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=89.67 E-value=0.025 Score=29.37 Aligned_cols=434 Identities=11% Similarity=-0.001 Sum_probs=161.1 Q ss_pred eeeeeeeeecceeeecccccccccc-ccCCCCCcccccCccc---ceeccccCCcc------cch-hhh-hhHHhhhccH Q lcl|Aclame:pro 58 VVYSIIIFRKNQVLKKEKIIVPYNH-QEPPFKFNLFEYSPES---LMYLPSISDPD------AFF-LIN-LFRKYRFNND 125 (945) Q Consensus 58 ~~~~~~~~k~n~l~kK~K~i~p~~~-r~pp~~f~L~~~s~~s---l~~lps~s~p~------~~~-~~~-v~~~~Am~ns 125 (945) ..|- ....||-.|..+..+..... ....+ +....... +..+-....+. ... ... .-....+..+ T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~l~~~~i~~l---i~~~~~~~~~r~~~l~~YY~g~~~~i~~~~~~~~~~~~~~~ki~~n 76 (506) T protein:vir:94 1 MDYD-LTEHKQANLIYQESLENLTPNKIMKF---ITHHFNYQRPRLEMLDDYYQGYNLKILDKQSRRHEDGKADHRATHS 76 (506) T ss_pred CCcc-hhhhhcceeecccchhcCCHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCccccccccccccccCCcceeecc Confidence 5555 45555555555433211100 00000 00000000 00000000000 000 000 0000112233 Q ss_pred HHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEE Q lcl|Aclame:pro 126 SKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVK 205 (945) Q Consensus 126 aV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~i 205 (945) -....|+..+.-+-+-|+.+-- . + ......+.++++. |.. ......+..+.+.+|.+|..+ T Consensus 77 ~~~~Iv~~~~~~l~G~p~~~~~-~-d---------~~~~~~l~~~~~~-N~~-------~~~~~~~~~~~~~~G~a~~~v 137 (506) T protein:vir:94 77 FAKYIADFQTSYSVGNPINVKL-P-D---------DGSNSGFDTFNKA-NDV-------DAENYDLFLDMSRYGRAYEYV 137 (506) T ss_pred hHHHHHHHhhhhhcccCceeec-C-c---------chHHHHHHHHHhc-cCH-------hHHHHHHHHHHHhcCeEEEEE Confidence 4444455555544444544310 0 0 0011224444432 221 122445667788899999998 Q ss_pred EecCCCeEEEEEEcCCceeEEEEcCCC--ceEE--EEEE--eeCCce-------eeeecccceeeeee----------cc Q lcl|Aclame:pro 206 IRDEQGNLVAITPVDGTTIKPILSEDT--GIVV--GYVQ--EVDGAI-------VAHFDKRDVVLFRQ----------NL 262 (945) Q Consensus 206 ird~~G~pveL~pLdPs~Vtv~~d~dG--~~~~--~Yv~--~~dG~~-------~~~~~a~DVIh~r~----------n~ 262 (945) ..+.+|++ .+..++|..+.++.++.. ...+ +|.. ..++.. ...+....+.++.. .. T Consensus 138 ~~ded~~~-~i~~~~p~~~~~v~dd~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~ 216 (506) T protein:vir:94 138 YRGEDNEE-HLAKLDPLDTFVIYSTDVDPKPIMAVRYHQIELVDDNQVSTINYVPETWTADTYTLYNPTPIMGKMQVDTT 216 (506) T ss_pred EecCCCee-EEEEEcccceEEEecCCCCCceEEEEEEEeeeeccCCceeEEEEEEEEEeCceEEEeccccCccceecccc Confidence 88888876 577899999988876532 2111 1111 011110 00111111111100 00 Q ss_pred CCCCc-------cCcccccHHHHHHHHHHHHHH---HHHHHHHHHHhCCCCceEEEEeccc------------ccccccc Q lcl|Aclame:pro 263 TPDVY-------MYGYSLPPIEILYKVILSDIF---IDKGNLDYYRKGGSIPEGILAIEPP------------SYKEGDI 320 (945) Q Consensus 263 ~~d~~-------~~GyGlSPI~aa~~~I~~~~a---aee~~a~~F~nnGa~PsGILs~k~g------------~~~~~k~ 320 (945) ++.+. ....|.|.+......++.... .......+|.+ |-.++.-... ...+... T Consensus 217 ~~~g~vPvv~~~n~~~~~sd~e~~~~liDa~d~~~S~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 292 (506) T protein:vir:94 217 KPITTFPVVEFKNSNFRLGDFENVLPLIDLYDAAQSDTANYMTDLNE----AMLIIQGDIDTLFEGSDMMNTIDPNDEDA 292 (506) T ss_pred ccCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhh----HHHHHhcCccccccchhcccccccccccc Confidence 00000 001233434433333322221 11111122211 1111110000 0000000 Q ss_pred chhccHHHHHHHHHHHHHHhc-C-cccCcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCC Q lcl|Aclame:pro 321 YPQLSREQLESIQRQLQAIMM-G-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSN 398 (945) Q Consensus 321 ~~~LS~Eq~erlKe~we~~~s-G-~Nagkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT 398 (945) ......+..+.+ +.+..... . ...+.+...+.+.+..-++.+..+..+....+...+.|...-++|..-.+.. .++ T Consensus 293 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~~n 370 (506) T protein:vir:94 293 MAKLAKDKLELI-KEMKDANMLLLKSGMTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTDENF-ASN 370 (506) T ss_pred ccccccchhHHH-hhhhhcCeeeecccccccCccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCccccccccc-ccc Confidence 111111111111 11111110 0 1111122223444555566655666777888999999999999996432211 122 Q ss_pred cccH------------HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccceeEEEeechhhcCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 399 KATA------------EVMASLTKAKGLEPLMATISKGFDEVVS-EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGF 465 (945) Q Consensus 399 ~SN~------------Eqq~~~F~~~tL~Pll~~IEqeLn~kL~-~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~Gi 465 (945) -|.. -......+...++..++.+...++..=. .......+.+.|+.....|..+.++++.++ .|+ T Consensus 371 ~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~ 448 (506) T protein:vir:94 371 SSGVAMQYKVLGTVELASTKRRMFERGLYARYQIISDIENSIHGDWTFDPQELTFTFRDNLPADNISQIKALVQA--GAT 448 (506) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccceEEeCCCCCcCHHHHHHHHHHH--hcc Confidence 2221 0112333444555555444444332100 111223467889888888999999988887 589 Q ss_pred cCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchhHHHHHHHHH Q lcl|Aclame:pro 466 RSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAGLEVLR 545 (945) Q Consensus 466 mT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~k~a~~~~lr 545 (945) ++...+++++++ +++.+.-+- ... .+.+.... .....+...+... .++.+...+++ T Consensus 449 iS~et~~~~lp~--v~d~~~E~~-----ri~---~E~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~e--------- 504 (506) T protein:vir:94 449 LPQKYLYQQLPG--VTNPQDIVD-----MMK---EQSANGDY--SFDQNGVISNDGQ---TNTTATQTDEE--------- 504 (506) T ss_pred CChHHHHHhCCC--CCCHHHHHH-----HHH---HHHHHHhh--cchhhcCCCcccC---ccccccccccC--------- Confidence 999888887643 222111000 000 00000000 0000011110000 00000000000 Q ss_pred HHHhhhh Q lcl|Aclame:pro 546 NLFKSLD 552 (945) Q Consensus 546 ~~~k~l~ 552 (945) ++ T Consensus 505 -----~~ 506 (506) T protein:vir:94 505 -----VR 506 (506) T ss_pred -----CC Confidence 00 No 226 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=89.13 E-value=0.028 Score=29.08 Aligned_cols=430 Identities=11% Similarity=0.055 Sum_probs=173.1 Q ss_pred ccceeeeeeeeee-----cceeeeccccccccccccCCCCCcccccCc--ccce--ecccc-CCcccchhhhhhHHhhhc Q lcl|Aclame:pro 54 WNSTVVYSIIIFR-----KNQVLKKEKIIVPYNHQEPPFKFNLFEYSP--ESLM--YLPSI-SDPDAFFLINLFRKYRFN 123 (945) Q Consensus 54 ~~~~~~~~~~~~k-----~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~--~sl~--~lps~-s~p~~~~~~~v~~~~Am~ 123 (945) -|-.-.+..++=. ..++-.+-.+++|.....-........+.+ ...+ .+..- ...+.+.+++-+++. +. T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~m-a~ 79 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQL-IN 79 (516) T ss_pred CCchHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHH-hh Confidence 1111111111100 111111111111111100000000000000 1110 01111 111344466777776 58 Q ss_pred cHHHHHHHHHHHHhhcc-----CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 124 NDSKLIKVSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTI 198 (945) Q Consensus 124 nsaV~aCV~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~ 198 (945) +|.|..||+.|.+.+.- -|..|- .++.....+.+.. .......+++--|-..++++. ++.++.. T Consensus 80 ~pEvd~Av~eIVneaiv~d~~~~pV~l~--L~~~~~s~~ik~k-I~eeF~~Il~ll~F~~~~~~~--------fR~WYVD 148 (516) T protein:vir:10 80 NPEVERAVANIVNEAIVYERGHKVVSLD--LDDTDFGSNVKEK-ILEEFDEVCRLLDASRKLDTL--------FRRWYVD 148 (516) T ss_pred ccchhhHHHHhhcceeEecCCCceEEEE--ecccCcchHHHHH-HHHHHHHHHHHhccchhhhHH--------Hhhhhhc Confidence 89999999999987752 222221 1111111111111 112222333322444455554 4445678 Q ss_pred CCeEEEEEec-CCCeEEEEEEcCCceeEEEEc-----CCCceE-----EEEEEee-------CCc-----eeeeecccce Q lcl|Aclame:pro 199 DRGAIVKIRD-EQGNLVAITPVDGTTIKPILS-----EDTGIV-----VGYVQEV-------DGA-----IVAHFDKRDV 255 (945) Q Consensus 199 Gna~i~iird-~~G~pveL~pLdPs~Vtv~~d-----~dG~~~-----~~Yv~~~-------dG~-----~~~~~~a~DV 255 (945) |..|+.++.+ ....+.+|++|+|..++.++. .+|... ..|.|.+ .|+ ....++ .+. T Consensus 149 gRi~fhKiid~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~-~dA 227 (516) T protein:vir:10 149 SRIFFHKIMPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIP-RSA 227 (516) T ss_pred ceEEEEEEecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeec-hhh Confidence 8888885554 355688999999999976543 222211 1232221 121 222333 344 Q ss_pred eeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHH Q lcl|Aclame:pro 256 VLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQ 335 (945) Q Consensus 256 Ih~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~ 335 (945) |++....--+. ..+.=+|-+..|...+....-++.. .-.++=..++-+-|....-|.. |..-.++=...+... T Consensus 228 I~y~hSGL~d~-~~~~i~syLhkAiKp~NQLkm~EDA-lVIYRitRAPeRRvFYIDvGnl-----Pk~KAeqYl~~im~k 300 (516) T protein:vir:10 228 VVYASSGLMDC-SDRGIIGYLHNAVKPANQLKLLEDA-MVIYRITRAPERRVFYIDVGNM-----NNRKATEYVNGIMQS 300 (516) T ss_pred eeeecccceeC-CCCceeeeehhhhHhHHhhHHHHhh-HHHHhhhccccceEEEEecCCC-----CchhHHHHHHHHHHh Confidence 44432111111 1122244566666666554444443 2233334566666766654322 111111222222222 Q ss_pred HHHHh-----cC--cccCc--ccc----c-----CCCceeeeccC--ChhhHHHHHHHHHHHHHHHHHhcCChhhccccc Q lcl|Aclame:pro 336 LQAIM-----MG--DYTQV--PIL----S-----GGKFTWIDFKG--KRRDMQFKELAEFVARKICAVYQVSPQDVGILE 395 (945) Q Consensus 336 we~~~-----sG--~Nagk--p~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e 395 (945) +++.. .| .+..+ .|+ | +.|.+.+.+.- +.-+++ -.++..+...++++||.+-++... T Consensus 301 ~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~ 377 (516) T protein:vir:10 301 LKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMD---DVRWFNKKLYEALRIPLSRIPRDD 377 (516) T ss_pred cCceeEEeCCCCeeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCcccccCCC Confidence 22221 12 11111 111 1 23566666543 333443 456788999999999999997544 Q ss_pred CCCc--cc-HH--HHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeEEEeechhhcC-------H Q lcl|Aclame:pro 396 GSNK--AT-AE--VMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIKLWFKEDDLEK-------E 450 (945) Q Consensus 396 ~gT~--SN-~E--qq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~f~fd~~~l~D-------~ 450 (945) +++. +. .| .-...| ...+.-+..++...+...|... ++ ...+.++|..+..-. + T Consensus 378 ~~~~~~Gr~~EItRDEiKF-~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil 456 (516) T protein:vir:10 378 GGMVIGGQDTAITRDELDF-RKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETL 456 (516) T ss_pred CceeeccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHH Confidence 4321 11 11 112223 3345556666666655444222 22 234566666554432 2 Q ss_pred HHHHHHHHHHH--hCCCcCHHHHHHH-HhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCC Q lcl|Aclame:pro 451 RDWWNIIQGQL--NTGFRSINEARME-KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGG 525 (945) Q Consensus 451 kerae~~~~~v--~~GimT~NEaRe~-lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~ 525 (945) ..|+.+++.+- -+.+++.+=+|+. +.+.-.+-. .++.+-+.. .+.+-. .++ .++.+- T Consensus 457 ~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~-----------~e~k~I~~E--~~~~~~----~~p-~~~~~f 516 (516) T protein:vir:10 457 RLRVDALSQIEPYVGKYVSHDYVMKNILQMTEEQIA-----------QEEKQIEQE--AGIKRF----QNP-ENEDDF 516 (516) T ss_pred HHHHHHHHHhhhhhccccchHHHHHHHhcCCHhhHH-----------HHHHHHHHh--hhCCCC----CCC-CccccC Confidence 34555554443 2345555555543 333211100 000000000 000000 000 000000 No 227 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=89.13 E-value=0.028 Score=29.08 Aligned_cols=430 Identities=11% Similarity=0.055 Sum_probs=173.1 Q ss_pred ccceeeeeeeeee-----cceeeeccccccccccccCCCCCcccccCc--ccce--ecccc-CCcccchhhhhhHHhhhc Q lcl|Aclame:pro 54 WNSTVVYSIIIFR-----KNQVLKKEKIIVPYNHQEPPFKFNLFEYSP--ESLM--YLPSI-SDPDAFFLINLFRKYRFN 123 (945) Q Consensus 54 ~~~~~~~~~~~~k-----~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~--~sl~--~lps~-s~p~~~~~~~v~~~~Am~ 123 (945) -|-.-.+..++=. ..++-.+-.+++|.....-........+.+ ...+ .+..- ...+.+.+++-+++. +. T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~m-a~ 79 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQL-IN 79 (516) T ss_pred CCchHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHH-hh Confidence 1111111111100 111111111111111100000000000000 1110 01111 111344466777776 58 Q ss_pred cHHHHHHHHHHHHhhcc-----CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 124 NDSKLIKVSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTI 198 (945) Q Consensus 124 nsaV~aCV~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~ 198 (945) +|.|..||+.|.+.+.- -|..|- .++.....+.+.. .......+++--|-..++++. ++.++.. T Consensus 80 ~pEvd~Av~eIVneaiv~d~~~~pV~l~--L~~~~~s~~ik~k-I~eeF~~Il~ll~F~~~~~~~--------fR~WYVD 148 (516) T protein:vir:10 80 NPEVERAVANIVNEAIVYERGHKVVSLD--LDDTDFGSNVKEK-ILEEFDEVCRLLDASRKLDTL--------FRRWYVD 148 (516) T ss_pred ccchhhHHHHhhcceeEecCCCceEEEE--ecccCcchHHHHH-HHHHHHHHHHHhccchhhhHH--------Hhhhhhc Confidence 89999999999987752 222221 1111111111111 112222333322444455554 4445678 Q ss_pred CCeEEEEEec-CCCeEEEEEEcCCceeEEEEc-----CCCceE-----EEEEEee-------CCc-----eeeeecccce Q lcl|Aclame:pro 199 DRGAIVKIRD-EQGNLVAITPVDGTTIKPILS-----EDTGIV-----VGYVQEV-------DGA-----IVAHFDKRDV 255 (945) Q Consensus 199 Gna~i~iird-~~G~pveL~pLdPs~Vtv~~d-----~dG~~~-----~~Yv~~~-------dG~-----~~~~~~a~DV 255 (945) |..|+.++.+ ....+.+|++|+|..++.++. .+|... ..|.|.+ .|+ ....++ .+. T Consensus 149 gRi~fhKiid~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~-~dA 227 (516) T protein:vir:10 149 SRIFFHKIMPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIP-RSA 227 (516) T ss_pred ceEEEEEEecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeec-hhh Confidence 8888885554 355688999999999976543 222211 1232221 121 222333 344 Q ss_pred eeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHH Q lcl|Aclame:pro 256 VLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQ 335 (945) Q Consensus 256 Ih~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~ 335 (945) |++....--+. ..+.=+|-+..|...+....-++.. .-.++=..++-+-|....-|.. |..-.++=...+... T Consensus 228 I~y~hSGL~d~-~~~~i~syLhkAiKp~NQLkm~EDA-lVIYRitRAPeRRvFYIDvGnl-----Pk~KAeqYl~~im~k 300 (516) T protein:vir:10 228 VVYASSGLMDC-SDRGIIGYLHNAVKPANQLKLLEDA-MVIYRITRAPERRVFYIDVGNM-----NNRKATEYVNGIMQS 300 (516) T ss_pred eeeecccceeC-CCCceeeeehhhhHhHHhhHHHHhh-HHHHhhhccccceEEEEecCCC-----CchhHHHHHHHHHHh Confidence 44432111111 1122244566666666554444443 2233334566666766654322 111111222222222 Q ss_pred HHHHh-----cC--cccCc--ccc----c-----CCCceeeeccC--ChhhHHHHHHHHHHHHHHHHHhcCChhhccccc Q lcl|Aclame:pro 336 LQAIM-----MG--DYTQV--PIL----S-----GGKFTWIDFKG--KRRDMQFKELAEFVARKICAVYQVSPQDVGILE 395 (945) Q Consensus 336 we~~~-----sG--~Nagk--p~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e 395 (945) +++.. .| .+..+ .|+ | +.|.+.+.+.- +.-+++ -.++..+...++++||.+-++... T Consensus 301 ~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~ 377 (516) T protein:vir:10 301 LKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMD---DVRWFNKKLYEALRIPLSRIPRDD 377 (516) T ss_pred cCceeEEeCCCCeeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCcccccCCC Confidence 22221 12 11111 111 1 23566666543 333443 456788999999999999997544 Q ss_pred CCCc--cc-HH--HHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeEEEeechhhcC-------H Q lcl|Aclame:pro 396 GSNK--AT-AE--VMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIKLWFKEDDLEK-------E 450 (945) Q Consensus 396 ~gT~--SN-~E--qq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~f~fd~~~l~D-------~ 450 (945) +++. +. .| .-...| ...+.-+..++...+...|... ++ ...+.++|..+..-. + T Consensus 378 ~~~~~~Gr~~EItRDEiKF-~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil 456 (516) T protein:vir:10 378 GGMVIGGQDTAITRDELDF-RKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETL 456 (516) T ss_pred CceeeccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHH Confidence 4321 11 11 112223 3345556666666655444222 22 234566666554432 2 Q ss_pred HHHHHHHHHHH--hCCCcCHHHHHHH-HhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCC Q lcl|Aclame:pro 451 RDWWNIIQGQL--NTGFRSINEARME-KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGG 525 (945) Q Consensus 451 kerae~~~~~v--~~GimT~NEaRe~-lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~ 525 (945) ..|+.+++.+- -+.+++.+=+|+. +.+.-.+-. .++.+-+.. .+.+-. .++ .++.+- T Consensus 457 ~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~-----------~e~k~I~~E--~~~~~~----~~p-~~~~~f 516 (516) T protein:vir:10 457 RLRVDALSQIEPYVGKYVSHDYVMKNILQMTEEQIA-----------QEEKQIEQE--AGIKRF----QNP-ENEDDF 516 (516) T ss_pred HHHHHHHHHhhhhhccccchHHHHHHHhcCCHhhHH-----------HHHHHHHHh--hhCCCC----CCC-CccccC Confidence 34555554443 2345555555543 333211100 000000000 000000 000 000000 No 228 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=89.09 E-value=0.028 Score=29.06 Aligned_cols=414 Identities=10% Similarity=-0.032 Sum_probs=142.4 Q ss_pred eecceeeeccccccccccccCCCCCcccccCccc---ceec----ccc-CCcccchhhh-hhHHhhhccHHHHHHHHHHH Q lcl|Aclame:pro 65 FRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPES---LMYL----PSI-SDPDAFFLIN-LFRKYRFNNDSKLIKVSEIP 135 (945) Q Consensus 65 ~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~s---l~~l----ps~-s~p~~~~~~~-v~~~~Am~nsaV~aCV~iIA 135 (945) .-+|.++.-++...-+....... +....... +..+ .+. .......... ......+..+-..-.|+..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~r~~~~~~yy~g~~~i~~~~~~~~~~~~~~ki~~n~~~~iv~~~~ 77 (489) T protein:vir:99 1 MLQEDFEAIDYESKLWIDQLKNY---ISRFKAEQLERLKELKRYYLGDNNIKYRPAKTDKYAADNRIASDFAKYITVFEQ 77 (489) T ss_pred CCccceeeeCCCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHhcccCccccccccccccCCcceeecchHHHHHHHHh Confidence 12222222111100000000000 00000000 0000 000 0000000000 00000112233334444444 Q ss_pred HhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEe----cCCC Q lcl|Aclame:pro 136 KKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIR----DEQG 211 (945) Q Consensus 136 ~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iir----d~~G 211 (945) .-+-.-|+.+-. .+ ......+.+++.+ |.. ......+..+.+.+|.+|..+.. +..| T Consensus 78 ~~l~g~~~~~~~--~d---------~~~~~~l~~~~~~-n~~-------~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~ 138 (489) T protein:vir:99 78 GYMLGVPVEYKN--EN---------KDLQAAIDLMSVR-NNE-------DYHNVKIKTDLSIYGRAYELLTVEKIDDKKT 138 (489) T ss_pred hhhccCCceeec--CC---------hhHHHHHHHHHhh-cCh-------hHHHHHHHHHHhhCCeEEEEEeeccCcCCCc Confidence 444344443210 00 0011223333332 211 12334566777889988876543 3444 Q ss_pred eEEEEEEcCCceeEEEEcCCC--ceEE--EEEEeeCC--c---eeeeecccceeeeeeccC-------------CCCc-- Q lcl|Aclame:pro 212 NLVAITPVDGTTIKPILSEDT--GIVV--GYVQEVDG--A---IVAHFDKRDVVLFRQNLT-------------PDVY-- 267 (945) Q Consensus 212 ~pveL~pLdPs~Vtv~~d~dG--~~~~--~Yv~~~dG--~---~~~~~~a~DVIh~r~n~~-------------~d~~-- 267 (945) + ..+..++|..+.++.++.. .... +|+...++ . ....+.++.+.+++.... +.+. T Consensus 139 ~-~~i~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~vP 217 (489) T protein:vir:99 139 E-VKLYQLPAEQTFVIYDDTYQRNSLMAVHFYDIDYGSGKRKQIIKAYTSDTIYTYEDYNLETKGMRLKDYEGHFFKGVP 217 (489) T ss_pred c-eEEEEEcccceEEEEcCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEecCCCcccceecccccccCCcee Confidence 4 4688899999888876543 2221 11111111 1 112223333333221100 0000 Q ss_pred -----cCcccccHHHHHHHHHHH---HHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHH Q lcl|Aclame:pro 268 -----MYGYSLPPIEILYKVILS---DIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAI 339 (945) Q Consensus 268 -----~~GyGlSPI~aa~~~I~~---~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~ 339 (945) ....|.|.+......++. ..........+|. .|-.++ .+. ....+........+... T Consensus 218 vv~~~n~~~~~s~~~~v~~liDa~d~~~s~~~~~~~~~~----~~~l~i--~g~---------~~~~~~~~~~~~~~~~~ 282 (489) T protein:vir:99 218 VNEYANNEERTGAYESVLDNIDAYDLSQSELANFQQDSV----NALLVI--AGN---------AYTGADENDYLDDGRLN 282 (489) T ss_pred EEEeecCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhh----hhhhhh--ccC---------Ccccccchhhhhhcccc Confidence 001244444443333333 2222222222332 122222 111 01111111111111111 Q ss_pred hc-------CcccCcccccCC-------CceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH Q lcl|Aclame:pro 340 MM-------GDYTQVPILSGG-------KFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM 405 (945) Q Consensus 340 ~s-------G~Nagkp~VL~~-------G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq 405 (945) .. +...++.+.++. +.+...+.....+..+....+...+.|...-++|..-.... .++-|. ++. T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~n~Sg-~Al 360 (489) T protein:vir:99 283 PNGRLAISIGFKKAQVLILDDNPNPNGVKPQAYFLKKEYDTAGSEAYKNRLVADILRFTFTPDTQDMKF-SGVQSG-ESM 360 (489) T ss_pred cccccccccccccceeeeeccccCccccccceeeeeecCChHHHHHHHHHHHHHHHHHhCCcccccccc-cccchH-HHH Confidence 11 111122222222 22333344333444556677888999999999985432111 122222 111 Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHhhcc---ccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHH Q lcl|Aclame:pro 406 -------------ASLTKAKGLEPLMATISKGFDEVVSE---FRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSIN 469 (945) Q Consensus 406 -------------~~~F~~~tL~Pll~~IEqeLn~kL~~---~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~N 469 (945) ....+...++-.++.+...+...-.. ......+.+.|+.....|..+.++++.++. |+++.. T Consensus 361 ~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~~i~v~f~~~~p~d~~~~~~~~~kl~--giis~e 438 (489) T protein:vir:99 361 KYKLMASDNYREKQERLFKKGLMRRLRLAANIWAIKGNEATTYSLVNDTSIVFTPNLPQNDNEIVTAAQNLY--GIVSDQ 438 (489) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHH Confidence 12233334444444443333221111 111234678888888889999999888874 789988 Q ss_pred HHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccchh Q lcl|Aclame:pro 470 EARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQ 536 (945) Q Consensus 470 EaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~se~ 536 (945) .+.++++. +...|..- ......+.. ...... . .....++ ..++.+..+++. T Consensus 439 t~~~~l~~--v~~~d~~~---E~~ri~~E~-~~~~~~--~-~~~~~~~-------~~~~~~~~~~~p 489 (489) T protein:vir:99 439 TIFEILNT--VTGVDAEA---ELKRLKEEA-DKKQSL--P-EPRLVGD-------ASGQEEPTAEKP 489 (489) T ss_pred HHHHhcCC--CCchhHHH---HHHHHHHHH-HHHhcc--c-cccccCC-------CCCCcCCCCCCC Confidence 87776532 22111100 000000000 000000 0 0001111 111111111111 No 229 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=88.53 E-value=0.032 Score=28.80 Aligned_cols=437 Identities=12% Similarity=0.096 Sum_probs=175.7 Q ss_pred cchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCcccccCc----ccceecccc---CCcccchhhh Q lcl|Aclame:pro 43 FKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSP----ESLMYLPSI---SDPDAFFLIN 115 (945) Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~s~----~sl~~lps~---s~p~~~~~~~ 115 (945) .-|.|..-+ -|-. +++-- ...+|..+..+++|.....-........+.| ...++...- ...+.+.+++ T Consensus 1 ~~~~l~~~~-~~~~---~~~~~-~~~~~~~~~~s~~~P~~~dGa~~i~~~~~~~~~~~gg~~~~~~~~e~~~~~~~eLI~ 75 (521) T protein:vir:81 1 MFSRLKMLA-RWAD---FDNDK-YEEQIKDKAESIAAPKNNDGATEVEINDNLPASAWNSLTQQFYSTDQKISTTKQLVN 75 (521) T ss_pred CcchhhhhH-hhcC---chhhh-HHhhhccCccccccCCCCCCceEecccCCCcceeecceeeeecccccchhhHHHHHH Confidence 111111111 1111 11111 1122211222222211100000000000001 111111110 1113455677 Q ss_pred hhHHhhhccHHHHHHHHHHHHhhcc-----CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHH Q lcl|Aclame:pro 116 LFRKYRFNNDSKLIKVSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGM 190 (945) Q Consensus 116 v~~~~Am~nsaV~aCV~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~ 190 (945) -+++. +.+|.|..||+.|.+.+.- -|..|- .++.....+.+.. .......+++--|-..++++. T Consensus 76 ~YR~m-a~~pEvd~Av~eIVneaiv~d~~~~pV~l~--L~~~~~s~~iK~k-I~eeF~~Il~ll~F~~~~~~~------- 144 (521) T protein:vir:81 76 TYRGL-MNNHEVENAVQNIVNDAIVFEEGHEVVSLN--LEATGFSESVKER-IHEEFKDLLNTIQFDRRGQDM------- 144 (521) T ss_pred HHHHH-hhccchhhHHHHhhcceeEecCCCceEEEE--ecccccchHHHHH-HHHHHHHHHHHhccchhhhHH------- Confidence 77777 5889999999999987752 233221 1111111111111 112222333222344455554 Q ss_pred HHHHHhccCCeEEEEEecC--CCeEEEEEEcCCceeEEEEcC-----CCc-----eEEEEEEeeCC------------ce Q lcl|Aclame:pro 191 VLDDILTIDRGAIVKIRDE--QGNLVAITPVDGTTIKPILSE-----DTG-----IVVGYVQEVDG------------AI 246 (945) Q Consensus 191 Lv~dlLl~Gna~i~iird~--~G~pveL~pLdPs~Vtv~~d~-----dG~-----~~~~Yv~~~dG------------~~ 246 (945) ++.++..|..|+.++.+. ...+.+|++|+|..++.++.. .|. ....|.|.+.+ +. T Consensus 145 -fR~WYVDgRi~fhkiid~~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~ 223 (521) T protein:vir:81 145 -FRRWYVDSRIFFHKIIGKNPKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNS 223 (521) T ss_pred -HhhhhhcceEEEEEEEcCCccccceeeeeeCCcceeeeeeecccccCccceecceeeeeeeecCCccccccceeecCCc Confidence 445577899999888553 356899999999999875431 121 11123333321 11 Q ss_pred eeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccH Q lcl|Aclame:pro 247 VAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSR 326 (945) Q Consensus 247 ~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~ 326 (945) ...+ +.+.|++..-.- .+...++=+|-+..|...+....-++.. .-.++=..++-+-|....-|.. |..-.+ T Consensus 224 ~vkI-~~dAI~y~hSGl-~d~~~~~i~syLhkAiKp~NQLkm~EDA-lVIYRitRAPeRRvFYIDvGnl-----pk~KAe 295 (521) T protein:vir:81 224 RVKI-PRSAITYAHSGL-MDCDDKYIIGYLHRAVKPANQLKLLEDA-MVVYRITRAPERRVFFIDTGNM-----NNRKAA 295 (521) T ss_pred ceee-chhheeeeeccc-eeCCCCeeeecchhhhHhHHhhHHHHhh-HHHHhhhccccceEEEEecCCC-----CchhHH Confidence 2222 334444422111 1111223345577777666655444443 2333444566677777654322 211122 Q ss_pred HHHHHHHHHHHH-----HhcCc--cc--Ccccc----c-----CCCceeeecc--CChhhHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 327 EQLESIQRQLQA-----IMMGD--YT--QVPIL----S-----GGKFTWIDFK--GKRRDMQFKELAEFVARKICAVYQV 386 (945) Q Consensus 327 Eq~erlKe~we~-----~~sG~--Na--gkp~V----L-----~~G~k~~pLs--~sp~D~QflE~rk~~~eeIA~aFGV 386 (945) +=...+...+++ +..|. +. +..|+ | +.|.+.+.+. .+.-+++ -.++..+...++++| T Consensus 296 qYl~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnV 372 (521) T protein:vir:81 296 QHMNSVAQSFKNRVVYDASTGKLKNQQANLSMTEDYWLQRRDGKAITDVTTLPGASGMSDID---DIRYFNRKLYEALRV 372 (521) T ss_pred HHHHHHHHhcCceeEeecccccccccccccchhhhhcccccCCCcccceeecccCCCCChHH---HHHHHHHHHHHHhCC Confidence 222233333322 11231 11 12222 1 2356666654 3344444 445788999999999 Q ss_pred ChhhcccccCCC-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeEEEeechhhc Q lcl|Aclame:pro 387 SPQDVGILEGSN-----KATAEVMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIKLWFKEDDLE 448 (945) Q Consensus 387 PP~lLG~~e~gT-----~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~f~fd~~~l~ 448 (945) |.+-++.-+.++ .+.+.-.-..| ...+.-+..++...+...|... ++ ...+.++|..+..- T Consensus 373 P~sRl~~e~~~~~~~Gr~~EItRDEiKF-~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f 451 (521) T protein:vir:81 373 PLSRSNLSDANMVIGGDGSEITRDELEF-SKFIRTRQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYY 451 (521) T ss_pred ccccccCCCCcceeccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchH Confidence 999995433322 12222222233 3345555556555555433221 11 22356666655443 Q ss_pred C-------HHHHHHHHHHHHh-CC-CcCHHHHHHH-HhCCCCCCccccccccccccccccchhhccCCCCcccccccCCC Q lcl|Aclame:pro 449 K-------ERDWWNIIQGQLN-TG-FRSINEARME-KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQ 518 (945) Q Consensus 449 D-------~kerae~~~~~v~-~G-imT~NEaRe~-lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~ 518 (945) . +..|+.+++.+-. .| .++.+=+|+. +.+.-.+ ....+..-+...+.+-.+++..+. T Consensus 452 ~ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi~k~ILr~tDee-------------i~~~~k~I~~E~~~~~~~~p~~~~ 518 (521) T protein:vir:81 452 TEVKDAEILERRIGLIERITPYIGKYFSNQTVMRDILKYTDDQ-------------MDTEKKQIEEEANDPRFKQTPDEI 518 (521) T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHH-------------HHHHHHHHHHHhhCCCCCCCcccc Confidence 2 2344444444322 11 2333434332 3221100 000000000011111111100000 Q ss_pred CCCCCCC Q lcl|Aclame:pro 519 PSQQGGG 525 (945) Q Consensus 519 ~~~~~g~ 525 (945) ++- T Consensus 519 ----~~f 521 (521) T protein:vir:81 519 ----EDF 521 (521) T ss_pred ----cCC Confidence 000 No 230 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=88.47 E-value=0.032 Score=28.77 Aligned_cols=432 Identities=12% Similarity=0.092 Sum_probs=170.7 Q ss_pred hhccceeeeeeeeeecceee----ecc-ccccccccccCCCCCcccccCcc-cceecc-----c--cCCcccchhhhhhH Q lcl|Aclame:pro 52 LAWNSTVVYSIIIFRKNQVL----KKE-KIIVPYNHQEPPFKFNLFEYSPE-SLMYLP-----S--ISDPDAFFLINLFR 118 (945) Q Consensus 52 ~~~~~~~~~~~~~~k~n~l~----kK~-K~i~p~~~r~pp~~f~L~~~s~~-sl~~lp-----s--~s~p~~~~~~~v~~ 118 (945) .++|-.-.+..+|=...+.. |+. .+++|.+.-.-...+....+.+. ...++. . ....+.+.+++-++ T Consensus 1 m~f~~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR 80 (523) T protein:vir:68 1 MKFNILSLFAPWAKMDERDYKDQEKENLESITSPKLDDGAKEYEVSENEAQQTYNAMFQRMFGSQEPGLKSTRELIDTYR 80 (523) T ss_pred CCCchhhhhhhhhhhhhhhhhhhhhccCCCccccCCCCcceeeeccccccccccchhhhhhhhccccccchHHHHHHHHH Confidence 23332222222221111111 111 11111111000000000000000 000000 0 01123445667777 Q ss_pred HhhhccHHHHHHHHHHHHhhccC-----ceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHH Q lcl|Aclame:pro 119 KYRFNNDSKLIKVSEIPKKLTSK-----ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLD 193 (945) Q Consensus 119 ~~Am~nsaV~aCV~iIA~~IAsL-----P~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~ 193 (945) +. +.+|.|..||+.|.+.+.-. |..|- .++.....+.+.. .......+++--|-..++++. ++ T Consensus 81 ~m-a~~pEvd~Av~eIVneaiv~d~~~~pV~i~--Ld~~~~s~~iK~k-I~eeF~~Il~ll~F~~~~~~~--------fR 148 (523) T protein:vir:68 81 NL-MTNYEVDNAVSEIVSDAIVYEDDTEVVSIN--LDNTKFSPNIKSM-MLDEFNEVLNHLSFQRKGSDH--------FR 148 (523) T ss_pred HH-hhccchhhHHHHhhcceeeecCCCceEEEE--ecccccchHHHHH-HHHHHHHHHHHhccchhhhHH--------HH Confidence 76 68899999999999877522 22221 1111111121111 112223333322344455554 44 Q ss_pred HHhccCCeEEEEEecCC---CeEEEEEEcCCceeEEEEc-----CCCce-----EEEEEEeeC-------Cc-----eee Q lcl|Aclame:pro 194 DILTIDRGAIVKIRDEQ---GNLVAITPVDGTTIKPILS-----EDTGI-----VVGYVQEVD-------GA-----IVA 248 (945) Q Consensus 194 dlLl~Gna~i~iird~~---G~pveL~pLdPs~Vtv~~d-----~dG~~-----~~~Yv~~~d-------G~-----~~~ 248 (945) .++..|..|+.++.|.. ..+.+|++|+|..|+.++. +.|.. ...|+|.+. |+ ... T Consensus 149 ~WYVDgRi~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~g~~vi~~~~e~f~Y~~~~~~~~~~g~~~~~~~~i 228 (523) T protein:vir:68 149 RWYVDSRIFFHKIIDPKRPKEGIKELRRLDPRQVQYVREVITTTEAGVKIVKGYKEYFIYDTSHESYACDGRIYEAGTKI 228 (523) T ss_pred hheeeeEEEEEEEeeCCCccccceeeeeeCCcceeEEEeecCCCCcchhhhhhhhhheeeccccccccccccccCCCcce Confidence 55788899988877633 3588999999999976432 22211 112333322 11 222 Q ss_pred eecccceeeeee-ccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHH Q lcl|Aclame:pro 249 HFDKRDVVLFRQ-NLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSRE 327 (945) Q Consensus 249 ~~~a~DVIh~r~-n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~E 327 (945) .++ .+.|++.. .--+. .++.=+|-+..|...+....-.+.. .-.++=..++-+-|....-|.. |..-.++ T Consensus 229 kI~-~dAI~y~hSGL~d~--~~~~i~gyLhkAiKp~NQLkmlEDA-lVIYRitRAPeRRvFYIDvGnl-----Pk~KAeq 299 (523) T protein:vir:68 229 KIP-KAAIVYAHSGLVDC--CGKNIIGYLHRAIKPANQLKLLEDA-VVIYRITRAPDRRVWYVDTGNM-----PSRKAAE 299 (523) T ss_pred ecc-hhheeeeeccceeC--CCCceeccchhhhHHHHhhHHHHhh-HHHHhhhccccceEEEEecCCC-----CchhHHH Confidence 333 34444332 11111 1122235566666666554444443 2233334566666776654322 1111111 Q ss_pred HHHHHHHHHHHHh-----cC--cccCc--ccc----c-----CCCceeeeccC--ChhhHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 328 QLESIQRQLQAIM-----MG--DYTQV--PIL----S-----GGKFTWIDFKG--KRRDMQFKELAEFVARKICAVYQVS 387 (945) Q Consensus 328 q~erlKe~we~~~-----sG--~Nagk--p~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~~~eeIA~aFGVP 387 (945) =...+...+++.. .| .+..+ .|+ | +.|.+.+.+.- +.-++ +-.+|..+...++++|| T Consensus 300 Yl~~im~k~kNKlvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem---~DV~YF~kkLy~aLnVP 376 (523) T protein:vir:68 300 HMQHVMNTMKNRIAYDATTGKIKNQQHIMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNM---EDVRWFRNALYMALRIP 376 (523) T ss_pred HHHHHHHhhcceeEEeccCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChH---HHHHHHHHHHHHHhCCc Confidence 2222222222211 12 11111 111 1 23566666543 33344 34567889999999999 Q ss_pred hhhcccccC-CC--c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeEEEeechhhcC- Q lcl|Aclame:pro 388 PQDVGILEG-SN--K-ATAEVMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIKLWFKEDDLEK- 449 (945) Q Consensus 388 P~lLG~~e~-gT--~-SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~f~fd~~~l~D- 449 (945) .+-+..-.+ .+ . +.+.-.-..| ...+.-+..++...+...|... ++ ...+.++|..+..-. T Consensus 377 ~sRl~~~~~~f~~Gr~~EItRDEikF-~KFI~rLR~rFs~lf~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~E 455 (523) T protein:vir:68 377 ITRIPSDQGGIQFDAGTSITRDELSF-GKFIRELQHKFEEIFLDPLKTNLILKGIITEDEWNDEINNIKIKFHRDSYFSE 455 (523) T ss_pred ceeecCCCcceecccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHH Confidence 999943221 12 1 1222222233 3345556666666555444222 22 234566666554432 Q ss_pred ------HHHHHHHHHHHHh-CC-CcCHHHHHHH-HhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCC Q lcl|Aclame:pro 450 ------ERDWWNIIQGQLN-TG-FRSINEARME-KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPS 520 (945) Q Consensus 450 ------~kerae~~~~~v~-~G-imT~NEaRe~-lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~ 520 (945) +..|+.+++.+-. .| .++.+=+|+. +.+.-.+ .......-+...+.+-.+++.++. T Consensus 456 lKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDee-------------i~~~~kqI~~E~k~~~~~~p~~e~-- 520 (523) T protein:vir:68 456 LKDAEILERRINMLQMAEPFIGKYISHRTAMKDILQMSDEE-------------IEQEAKQIEEESKEARFQDPDQEQ-- 520 (523) T ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHH-------------HHHHHHHHHHHhhcCCCCCCchhh-- Confidence 2344444444322 11 2333334332 3221100 000000000000000000000000 Q ss_pred CCCCC Q lcl|Aclame:pro 521 QQGGG 525 (945) Q Consensus 521 ~~~g~ 525 (945) .+- T Consensus 521 --~~f 523 (523) T protein:vir:68 521 --EDF 523 (523) T ss_pred --hcC Confidence 000 No 231 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=87.73 E-value=0.037 Score=28.45 Aligned_cols=425 Identities=12% Similarity=0.096 Sum_probs=173.4 Q ss_pred hhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeec------ceeeeccccccccccccCCCCCcccccCcc---c Q lcl|Aclame:pro 28 KANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRK------NQVLKKEKIIVPYNHQEPPFKFNLFEYSPE---S 98 (945) Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~------n~l~kK~K~i~p~~~r~pp~~f~L~~~s~~---s 98 (945) -||.+..+. . +..++ |. +++ |. +...+. ||. -.+++.. + T Consensus 1 ~~~~~~~~~------------l----------f~f~~-~~de~~~~~~~-~~-~~~S~~----~p~---~~dGa~~I~~~ 48 (524) T protein:vir:10 1 MANFNTILS------------F----------LKPWA-NEDEKEYKQQI-NN-NLESVT----APK---LDDGAREIETQ 48 (524) T ss_pred CCchhhHHH------------H----------hhhhh-cchhhhhhhhh-cc-CCCccc----cCC---CCCCceeeccC Confidence 222222211 1 11111 11 111 11 111111 111 1111110 0 Q ss_pred ceeccc------------cCCcccchhhhhhHHhhhccHHHHHHHHHHHHhhcc-----CceEEEEeccCcccccccchh Q lcl|Aclame:pro 99 LMYLPS------------ISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRI 161 (945) Q Consensus 99 l~~lps------------~s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~ 161 (945) ....|. ....+.+.+++-+++. +.+|.|..||+.|.+.+.- -|..|- .++.+...+.+.. T Consensus 49 ~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR~m-a~~pEvd~Av~eIVneaiv~d~~~~pV~l~--Ld~~~~s~siK~k 125 (524) T protein:vir:10 49 EQNIPYNALMQQMFGSNEPEVKNTRELIDTYRNL-MNNYEVDNAVQEIVSDAIVYEDDKEVVALN--LDGTDFSQSIKDK 125 (524) T ss_pred cccccchhhhhhhhhcccchhhhHHHHHHHHHHH-hhccchhhHHHHhhcceeEecCCCceEEEE--ecccCcchHHHHH Confidence 000010 0111344466677776 5889999999999987752 222221 1111111111111 Q ss_pred hcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC---CCeEEEEEEcCCceeEEEEc----CCCce Q lcl|Aclame:pro 162 RDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE---QGNLVAITPVDGTTIKPILS----EDTGI 234 (945) Q Consensus 162 a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~---~G~pveL~pLdPs~Vtv~~d----~dG~~ 234 (945) .......+++--|-..++++. ++.++..|..|+.++.+. ...+.+|++|+|..++.++. .+++. T Consensus 126 -I~eeF~~Il~ll~F~~~~~~~--------fR~WYVDgRi~fHkiid~~~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~ 196 (524) T protein:vir:10 126 -ILAEFSEVLNLLNFQRKGTDH--------FQRWYVDSRIFFHKIINPKKMKDGVQELRRLDPRQVQYIREIVTRMEDGV 196 (524) T ss_pred -HHHHHHHHHHHhccchhhhHH--------HhhheeeceEEEEEEeeCCCccccceeeeeeCCccceeeeeecccCcccc Confidence 112222333222344455554 455578899998876653 33688999999999976432 22211 Q ss_pred ------EEEEEEee------------CCceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 ------VVGYVQEV------------DGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDY 296 (945) Q Consensus 235 ------~~~Yv~~~------------dG~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~ 296 (945) ...|.|.+ ..+....++.+.|+|....--+.. ++.=+|-+..|...+....-++.. .-. T Consensus 197 ~vi~~~~e~f~Y~~~~~~~~~~~~~~~~~~~ikI~~dAIvy~~SGL~d~~--~~~i~syLhkAiKp~NQLkm~EDA-lVI 273 (524) T protein:vir:10 197 KIVDGYREFFVYDTGHESYCADGRIYSAGTKVKIPRAAVVYAHSGLLDCC--GKNIIGYLQRAIKPANQLKLMEDA-MVI 273 (524) T ss_pred hhhcchhhheeecCCCcccccCcceecCCcceecchhheeeeccCcccCC--CCceeccchHhhHHHHhhHHHHhh-HHH Confidence 11233321 112334466667777543322222 122235566666666554444443 223 Q ss_pred HHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHh-----cC--cccCc--ccc----c-----CCCceee Q lcl|Aclame:pro 297 YRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIM-----MG--DYTQV--PIL----S-----GGKFTWI 358 (945) Q Consensus 297 F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~-----sG--~Nagk--p~V----L-----~~G~k~~ 358 (945) ++=..++-+-|+...-|.. |..-.++=...+...+++.. .| .+..+ .|+ | +.|.+.+ T Consensus 274 YRitRAPeRRvFYIDVGnl-----Pk~KAeqYl~~im~k~kNKlvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEIt 348 (524) T protein:vir:10 274 YRITRAPDRRVFYIDTGNM-----PSRKAAAQMQHIMNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVD 348 (524) T ss_pred HhhhccccceEEEEecCCC-----CchhHHHHHHHHHHhcCceeEEeccCCeeccchhhhhhHhhhcccccCCCCcccee Confidence 3334566666766654321 11111111222222222211 12 11111 111 1 2356666 Q ss_pred eccC--ChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCC--c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 359 DFKG--KRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSN--K---ATAEVMASLTKAKGLEPLMATISKGFDEVVSE 431 (945) Q Consensus 359 pLs~--sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT--~---SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~ 431 (945) .+.- +.-++ +-.+|..+...++++||.+-++.-+.+. . +.+.-.-..| ...+.-+..++...+...|.. T Consensus 349 TLpGgqnlgem---~DV~YF~kkLy~aLnVP~sRl~~e~~~~f~~gr~~EItRDEiKF-~KFI~rLR~rFs~lf~~~L~~ 424 (524) T protein:vir:10 349 TMPGATGMSDM---DDVLYFRTALYRALRIPESRIPSESNSGVMFDAGTAITRDELKF-AKWIRQLQNKFEEIFLDPLKT 424 (524) T ss_pred eccccCCcChH---HHHHHHHHHHHHHhCCCchhccCCCCccccccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHH Confidence 6543 33344 3456788999999999999995332221 1 2222222233 334555666666655544422 Q ss_pred c---------cc----cceeEEEeechhhcC-------HHHHHHHHHHHHh-CC-CcCHHHHHHH-HhCCCCCCcccccc Q lcl|Aclame:pro 432 F---------RN----EKDIKLWFKEDDLEK-------ERDWWNIIQGQLN-TG-FRSINEARME-KGLEPVPWGDVPFS 488 (945) Q Consensus 432 ~---------~~----~~g~~f~fd~~~l~D-------~kerae~~~~~v~-~G-imT~NEaRe~-lGlpPveGGD~~l~ 488 (945) . ++ ...+.++|..+..-. +..|+.+++.+-. .| .++.+=+|+. +.+.-.+ T Consensus 425 qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDee------- 497 (524) T protein:vir:10 425 NLILKKIITEDEWEREINNIKVTFNRDSYFSEMKDAEIMERRINMLTMAEPFIGKYISHQTAMKDFLQMTDEE------- 497 (524) T ss_pred hhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHH------- Confidence 2 22 234566666554432 2344444444322 11 2233334332 3221100 Q ss_pred ccccccccccchhhccCCCCcccccccCCCCCCCCCC Q lcl|Aclame:pro 489 GLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGG 525 (945) Q Consensus 489 ~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~ 525 (945) .......-+...+.+-.+++..+. .+- T Consensus 498 ------i~~~~k~I~~E~k~~~~~~~~~~~----~~f 524 (524) T protein:vir:10 498 ------INQEAKQIEEESKEARFQNPDEEE----EDF 524 (524) T ss_pred ------HHHHHHHHHHHhhcCCCCCCChhh----hcC Confidence 000000000000000000000000 000 No 232 >protein:vir:105154 Length: 525 # NCBI annotation: conserved phage-related protein # Family: family:all:6660 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398597;genbank:gi:80159853;genbank:GeneID:3772992 Probab=83.67 E-value=0.067 Score=27.04 Aligned_cols=389 Identities=12% Similarity=0.092 Sum_probs=154.8 Q ss_pred hhHH-hhhccHHHHHHHHHHH----HhhccCceEEEEeccCcccc---cc-------cch--hhcccHHHHHHhccCccC Q lcl|Aclame:pro 116 LFRK-YRFNNDSKLIKVSEIP----KKLTSKELEIYKHIEDKHVN---YY-------LKR--IRDARNILEFLERPDPYF 178 (945) Q Consensus 116 v~~~-~Am~nsaV~aCV~iIA----~~IAsLP~~VyRrtedg~ee---~~-------~r~--~a~dhpL~~LL~rPNp~m 178 (945) .++. ..-+.++-..-+++-+ +.+-.+.-. |- +-++... .+ ... .....-+...++.|.. T Consensus 1 ~~~~~~~~~~~~t~~k~~~~~e~~~~~~n~~~~~-y~-ty~~~~~~f~~gfv~~~~~ng~i~~v~~~~l~~~f~npd~-- 76 (525) T protein:vir:10 1 MTRTKGSKNKSTTIEKQSLQIEQLQEHINELERQ-YN-TYDDVVDAFIDGFVMDLCNNGKIKTVNLDTLQLWFNNPDK-- 76 (525) T ss_pred CCCCcCCcccccchhhhhhhHHHHHHHHhhhhhh-cc-hhhhHHHHHHHHHHHHhhcCCceeeeeHHHHHhhhcChHH-- Confidence 1110 0011111111122211 111111100 00 0000000 00 000 0000011111122221 Q ss_pred ChHHHHHHHHH--------------------------------------------------------HHHHHHhccCCeE Q lcl|Aclame:pro 179 SEVNSWEYLLG--------------------------------------------------------MVLDDILTIDRGA 202 (945) Q Consensus 179 T~~eFwetli~--------------------------------------------------------~Lv~dlLl~Gna~ 202 (945) |.+.+.. ++.+|+|.. T Consensus 77 ----~~~~i~~l~~y~yi~~~~v~ql~~li~~lp~l~y~i~~~~~~k~~~~~~s~~n~~l~k~i~hk~ltrdll~q---- 148 (525) T protein:vir:10 77 ----YINNIVNLLTYYYIIDGNVFQLYDLIFSLPPLDYQIKVLKRDKDYKEDLSTINLYLEKKIQHKQLTRDLLVQ---- 148 (525) T ss_pred ----HHHHHHHHHHHhhhhcchHHHHHHHHHhcCCcceeehhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHH---- Confidence 1111111 111222110 Q ss_pred EEEEecCCCeEEEEEEcCCc-----------eeEEEEcCCCceEEE-----------------------------EEE-- Q lcl|Aclame:pro 203 IVKIRDEQGNLVAITPVDGT-----------TIKPILSEDTGIVVG-----------------------------YVQ-- 240 (945) Q Consensus 203 i~iird~~G~pveL~pLdPs-----------~Vtv~~d~dG~~~~~-----------------------------Yv~-- 240 (945) ....|.+++.|.=+.. +|.+.-...|.+... |.. T Consensus 149 ----~a~~gtlig~wlg~~~~py~~vf~~~kyvfp~~r~~g~~v~vid~~~f~~~~~~~r~~~~~~lsp~i~~~~y~~~~ 224 (525) T protein:vir:10 149 ----LAHSGTLIGTWLGSKREPYFNVFNNLKYVFPYGRAKGKMVAVIDLQWFDEMSELERKLTFENLSPLITENKYKKWK 224 (525) T ss_pred ----hhccCceeEeeecCCCCcchhhhhhhhhhccccccCCceEEEEehHHhhhhhHHHHHHHHHhhchhhhhhhhhHHh Confidence 0122333333321110 111111112222110 000 Q ss_pred eeCC-----ceeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccc Q lcl|Aclame:pro 241 EVDG-----AIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSY 315 (945) Q Consensus 241 ~~dG-----~~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~ 315 (945) ..+| -....+|.+.++|.+...... ..+.|.|.+..+...|.......+...+.. +--+.|-.+|.+.+..+ T Consensus 225 ~~~~~~~~~~r~i~LP~e~t~~lr~~tl~r--nqrlG~s~vtp~l~dI~hk~klrd~EqsIA-~kii~a~avLk~gg~~g 301 (525) T protein:vir:10 225 EYNGENEDALRYIMLPISKTLVARIHTLSR--NQRLGIPYGTQTLFDIQHKQKLRDLEQSIA-DKIIKAMAVLKFRGKDD 301 (525) T ss_pred hcccccchhheeeecccceeEEeeeccccc--CcccCcchhhhHHHHHHHHHHHHHHHHHHH-HHhhhhheeeeeccccC Confidence 0011 123456667778876554332 245677777777766666554444333332 33456778998876544 Q ss_pred cccccchhccHHHHHHHHHHHHHHhc-C--cccCcccc-cCCCceee--eccC--ChhhHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 316 KEGDIYPQLSREQLESIQRQLQAIMM-G--DYTQVPIL-SGGKFTWI--DFKG--KRRDMQFKELAEFVARKICAVYQVS 387 (945) Q Consensus 316 ~~~k~~~~LS~Eq~erlKe~we~~~s-G--~Nagkp~V-L~~G~k~~--pLs~--sp~D~QflE~rk~~~eeIA~aFGVP 387 (945) ... .+-+.+++++-+..+.+.. | ...|.+++ ++.=+.+. .+.. ..-|-+ --+-..++|-.|+|++ T Consensus 302 n~m----k~p~~~kqkil~gVk~aleK~~kdK~Gi~vi~~Pdfa~~efp~ik~~~~glDg~---K~d~I~~DI~~A~GlS 374 (525) T protein:vir:10 302 NDS----KVKESAKRKVLAGVKRALEKGVKDKNGIACIAMPDFATFEFPEIKNGDKTLDPK---KYDSIDNDITNATGIS 374 (525) T ss_pred ccc----cCchHHHHHHHHHHHHHHhcccccccCeEEEeccceeecccccccCcccCCCch---hhhhhhhhhhhhhccc Confidence 433 3444445555555554442 2 22333332 23222222 2211 111222 1234568899999999 Q ss_pred hhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccceeEEEeechhhcCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 388 PQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVV---SEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTG 464 (945) Q Consensus 388 P~lLG~~e~gT~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL---~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~G 464 (945) ..+++ ++++||+++.-...-||+. +.-+++.||+..++++ ++......|.|++|.+...+.+.+.+.+-++...| T Consensus 375 ~sL~n-GdggNyAtaslnld~fykk-igVm~e~Iee~y~kL~d~Vl~~~k~~nyifnydkd~pi~~kkk~d~LIkL~d~g 452 (525) T protein:vir:10 375 QVLTN-GTKGNYASAKLNLDVFYKK-IGVMLEIIEEIYNQLIDIILGEEKGCNYIFQYNKDTPIEREKKLDTLIKLEAQG 452 (525) T ss_pred eeeec-CCCCceeeeeeeHHHHHHH-HHHHHHHHHHHHHHHHhhhcCcccCcceEEecCCCchhhhhhhhhhhhhhhccc Confidence 99986 4567888887777778775 7778888887777544 55555567889999999999999999888888888 Q ss_pred CcCHHHHHHHHhCCCCCCccccccccccccccccchhhccCCCCcccc-----cccCCCCCCCCCCCCCCccccchhHHH Q lcl|Aclame:pro 465 FRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLA-----QAMADQPSQQGGGVDENSSVPSEQKNA 539 (945) Q Consensus 465 imT~NEaRe~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~-----~~~~d~~~~~~g~~dd~e~~~se~k~a 539 (945) +.. --+....|..--+.-+ ..++..+... ..+. ..|+... .++.+...+ ..++++.++++-.+ T Consensus 453 ~s~-k~vldl~gis~e~y~E-----~s~yEtE~lk-l~EK-i~pp~~~~v~SGk~~n~iG~P----~~dd~~~~dati~s 520 (525) T protein:vir:10 453 YSA-KYVLDILGISSEEYFE-----ESIYEIEKLK-LREK-IMPPLNTNVLSGKDGNDIGSP----KLDDSDSSDATIES 520 (525) T ss_pred hhh-hhhhhhhccCcchHHH-----HHHHHHHHHH-Hhhh-ccccccceeeeccccccccCC----ccCCCcchhhhhhh Confidence 753 2233344432111100 0000000000 0000 0010000 000010000 00111111111000 Q ss_pred HHHHHHHH Q lcl|Aclame:pro 540 GLEVLRNL 547 (945) Q Consensus 540 ~~~~lr~~ 547 (945) - -||. T Consensus 521 ~---~~~~ 525 (525) T protein:vir:10 521 K---ERGV 525 (525) T ss_pred h---hcCC Confidence 0 0111 No 233 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=83.41 E-value=0.069 Score=26.96 Aligned_cols=433 Identities=12% Similarity=0.099 Sum_probs=169.6 Q ss_pred CCcchhhhhhhhhccc--eeeeeeeeeecceeeeccccccccccccCCC--CCccccc-Ccccceec--cccC-----Cc Q lcl|Aclame:pro 41 PGFKPLLTYRALAWNS--TVVYSIIIFRKNQVLKKEKIIVPYNHQEPPF--KFNLFEY-SPESLMYL--PSIS-----DP 108 (945) Q Consensus 41 ~~~~~~~~~~~~~~~~--~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~--~f~L~~~-s~~sl~~l--ps~s-----~p 108 (945) -.| |.|.. ---|.. +..| ++++ |++...+.+....+- ++....+ .+.+..+. +... .. T Consensus 1 m~~-~~L~~-~~~w~~~de~~~------~~~~--~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~ 70 (524) T protein:vir:72 1 MKF-NVLSL-FAPWAKMDERNF------KDQE--KEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMK 70 (524) T ss_pred CCC-chhhH-hhccccCcchhh------hhhh--ccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccc Confidence 011 11111 001221 1111 0111 122111111111110 0000000 00011110 1111 12 Q ss_pred ccchhhhhhHHhhhccHHHHHHHHHHHHhhcc-----CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHH Q lcl|Aclame:pro 109 DAFFLINLFRKYRFNNDSKLIKVSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNS 183 (945) Q Consensus 109 ~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eF 183 (945) +.+.+++-+++. +.+|.|..||+.|.+.+.- -|..|- .++.+...+.+. ........+++--|-..++++. T Consensus 71 ~~~eLI~~YR~m-a~~pEvd~Av~eIVneaiv~d~~~~pV~l~--L~~~~~s~~iK~-kI~eeF~~Il~ll~F~~~~~~~ 146 (524) T protein:vir:72 71 TTRELIDTYRNL-MNNYEVDNAVSEIVSDAIVYEDDTEVVALN--LDKSKFSPKIKN-MMLDEFSDVLNHLSFQRKGSDH 146 (524) T ss_pred hHHHHHHHHHHH-hhccchhhHHHHhhcceeEecCCCceEEEE--ecCcCcchHHHH-HHHHHHHHHHHHhccchhhhHH Confidence 345567777777 6889999999999987752 222221 111111111111 1112223333322344455554 Q ss_pred HHHHHHHHHHHHhccCCeEEEEEecCC---CeEEEEEEcCCceeEEEEc-----CCCceE-----EEEEEeeC------- Q lcl|Aclame:pro 184 WEYLLGMVLDDILTIDRGAIVKIRDEQ---GNLVAITPVDGTTIKPILS-----EDTGIV-----VGYVQEVD------- 243 (945) Q Consensus 184 wetli~~Lv~dlLl~Gna~i~iird~~---G~pveL~pLdPs~Vtv~~d-----~dG~~~-----~~Yv~~~d------- 243 (945) ++.++..|..|+.++.|.. ..+.+|++|+|..|+.++. +.|... ..|+|.+. T Consensus 147 --------fR~WYVDgRi~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~y~~~ 218 (524) T protein:vir:72 147 --------FRRWYVDSRIFFHKIIDPKRPKEGIKELRRLDPRQVQYVREIITETEAGTKIVKGYKEYFIYDTAHESYACD 218 (524) T ss_pred --------HhhheeeeEEEEEEEEeCCCccccceeeeeeCCccceeeeeeccCCCccchhhcchhhheeeccCccccccC Confidence 4455788899988876533 3588999999999976432 222111 12333321 Q ss_pred Cc-----eeeeecccceeeeee-ccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccc Q lcl|Aclame:pro 244 GA-----IVAHFDKRDVVLFRQ-NLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKE 317 (945) Q Consensus 244 G~-----~~~~~~a~DVIh~r~-n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~ 317 (945) |+ ....++ .+.|++.. .--+. .++.=+|-+..|...+....-.+.. .-.++=..++-+-|....-|.. T Consensus 219 g~~~~~~~~ikI~-~dAI~y~hSGL~d~--~~~~i~gyLhkAiKp~NQLkmlEDA-lVIYRitRAPeRRvFYIDvGnl-- 292 (524) T protein:vir:72 219 GRMYEAGTKIKIP-KAAVVYAHSGLVDC--CGKNIIGYLHRAVKPANQLKLLEDA-VVIYRITRAPDRRVWYVDTGNM-- 292 (524) T ss_pred ccccCCCcceecc-hhheeeeeccceeC--CCCceeccchhhhHhHHhhhHHHhh-HHHHhhhccccceEEEEecCCC-- Confidence 11 122233 34444332 11111 1122235566666666554444442 2233334566666766654322 Q ss_pred cccchhccHHHHHHHHHHHHHHh-----cC--cccCc--ccc----c-----CCCceeeeccC--ChhhHHHHHHHHHHH Q lcl|Aclame:pro 318 GDIYPQLSREQLESIQRQLQAIM-----MG--DYTQV--PIL----S-----GGKFTWIDFKG--KRRDMQFKELAEFVA 377 (945) Q Consensus 318 ~k~~~~LS~Eq~erlKe~we~~~-----sG--~Nagk--p~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~~~ 377 (945) |..-.++=...+...+++.. .| .+..+ .|+ | +.|.+.+.+.- +.-+++ -.+|.. T Consensus 293 ---Pk~KAeqYl~~im~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~ 366 (524) T protein:vir:72 293 ---PARKAAEHMQHVMNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNME---DIRWFR 366 (524) T ss_pred ---CchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHH---HHHHHH Confidence 11111122222222222221 12 11111 111 1 23566666543 333443 456788 Q ss_pred HHHHHHhcCChhhcccccCC--C---cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeE Q lcl|Aclame:pro 378 RKICAVYQVSPQDVGILEGS--N---KATAEVMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIK 439 (945) Q Consensus 378 eeIA~aFGVPP~lLG~~e~g--T---~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~ 439 (945) +...++++||.+-+.....+ + .+.+.-.-..| ...+.-+..++...+...|... ++ ...+. T Consensus 367 kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF-~KFI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~ 445 (524) T protein:vir:72 367 QALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTF-AKFIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIK 445 (524) T ss_pred HHHHHHhCCchhhcCCCCCccccccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcce Confidence 99999999999999322111 1 12222222233 3345556666666555444222 22 23456 Q ss_pred EEeechhhcC-------HHHHHHHHHHHHh-CC-CcCHHHHHHH-HhCCCCCCccccccccccccccccchhhccCCCCc Q lcl|Aclame:pro 440 LWFKEDDLEK-------ERDWWNIIQGQLN-TG-FRSINEARME-KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPP 509 (945) Q Consensus 440 f~fd~~~l~D-------~kerae~~~~~v~-~G-imT~NEaRe~-lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~ 509 (945) ++|..+..-. +..|+.+++.+-. .| .++.+=+|+. +.+.-.+ .......-+...+.+ T Consensus 446 ~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDee-------------i~~~~k~I~~E~k~~ 512 (524) T protein:vir:72 446 IEFHRDSYFAELKEAEILERRINMLTMAEPFIGKYISHRTAMKDILQMTDEE-------------IEQEAKQIEEESKEA 512 (524) T ss_pred EEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHH-------------HHHHHHHHHHHhhcC Confidence 6676554432 2344444443322 11 2233334332 2221100 000000000000000 Q ss_pred ccccccCCCCCCCCCC Q lcl|Aclame:pro 510 QLAQAMADQPSQQGGG 525 (945) Q Consensus 510 ~~~~~~~d~~~~~~g~ 525 (945) -.+++.++. .+- T Consensus 513 ~~~~~~~~~----~~f 524 (524) T protein:vir:72 513 RFQDPDQEQ----EDF 524 (524) T ss_pred CCCCCchhh----hcC Confidence 000000000 000 No 234 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=83.23 E-value=0.07 Score=26.91 Aligned_cols=433 Identities=12% Similarity=0.099 Sum_probs=169.7 Q ss_pred CCcchhhhhhhhhccc--eeeeeeeeeecceeeeccccccccccccCCC--CCccccc-Ccccceec--cccC-----Cc Q lcl|Aclame:pro 41 PGFKPLLTYRALAWNS--TVVYSIIIFRKNQVLKKEKIIVPYNHQEPPF--KFNLFEY-SPESLMYL--PSIS-----DP 108 (945) Q Consensus 41 ~~~~~~~~~~~~~~~~--~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~--~f~L~~~-s~~sl~~l--ps~s-----~p 108 (945) -.| |.|.. ---|.. +..| ++++ |++...+.+....+- ++....+ .+.+..+. +... .. T Consensus 1 m~~-~~L~~-~~~w~~~de~~~------~~~~--~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~ 70 (524) T protein:vir:10 1 MKF-NVLSL-FAPWAKMDERNF------KDQE--KEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMK 70 (524) T ss_pred CCC-chhhH-hhccccCcchhh------hhhh--ccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccc Confidence 011 11111 001221 1111 0111 122111111111110 0000000 00011110 1111 12 Q ss_pred ccchhhhhhHHhhhccHHHHHHHHHHHHhhcc-----CceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHH Q lcl|Aclame:pro 109 DAFFLINLFRKYRFNNDSKLIKVSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNS 183 (945) Q Consensus 109 ~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eF 183 (945) +.+.+++-+++. +.+|.|..||+.|.+.+.- -|..|- .++.+...+.+. ........+++--|-..++++. T Consensus 71 ~~~eLI~~YR~m-a~~pEvd~Av~eIVneaiv~d~~~~pV~l~--L~~~~~s~~iK~-kI~eeF~~Il~ll~F~~~~~~~ 146 (524) T protein:vir:10 71 TTRELIDTYRNL-MNNYEVDNAVSEIVSDAIVYEDDTEVVALN--LDKSKFSPKIKN-MMLDEFNDVLNHLSFQRKGSDH 146 (524) T ss_pred hHHHHHHHHHHH-hhccchhhHHHHhhcceeEecCCCceEEEE--ecCcCcchHHHH-HHHHHHHHHHHHhccchhhhHH Confidence 345567777777 6889999999999987752 222221 111111111111 1112222333322344455554 Q ss_pred HHHHHHHHHHHHhccCCeEEEEEecCC---CeEEEEEEcCCceeEEEEc-----CCCceE-----EEEEEeeC------- Q lcl|Aclame:pro 184 WEYLLGMVLDDILTIDRGAIVKIRDEQ---GNLVAITPVDGTTIKPILS-----EDTGIV-----VGYVQEVD------- 243 (945) Q Consensus 184 wetli~~Lv~dlLl~Gna~i~iird~~---G~pveL~pLdPs~Vtv~~d-----~dG~~~-----~~Yv~~~d------- 243 (945) ++.++..|..|+.++.|.. ..+.+|++|+|..|+.++. +.|... ..|+|.+. T Consensus 147 --------fR~WYVDgRi~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~y~~~ 218 (524) T protein:vir:10 147 --------FRRWYVDSRIFFHKIIDPKRPKEGIKELRRLDPRQVQYVREIITETEAGTKIVKGYKEYFIYDTAHESYACD 218 (524) T ss_pred --------HhhheeeeEEEEEEEeeCCCccccceeeeeeCCccceeeeeeccCCCccchhhcchhhheeeccCccccccC Confidence 4455788899988877633 3588999999999976432 222111 12333321 Q ss_pred Cc-----eeeeecccceeeeee-ccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccc Q lcl|Aclame:pro 244 GA-----IVAHFDKRDVVLFRQ-NLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKE 317 (945) Q Consensus 244 G~-----~~~~~~a~DVIh~r~-n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~ 317 (945) |+ ....++ .+.|++.. .--+. .++.=+|-+..|...+....-.+.. .-.++=..++-+-|....-|.. T Consensus 219 g~~~~~~~~ikI~-~dAI~y~hSGL~d~--~~~~i~gyLhkAiKp~NQLkmlEDA-lVIYRitRAPeRRvFYIDvGnl-- 292 (524) T protein:vir:10 219 GRMYEAGTKIKIP-KAAIVYAHSGLVDC--CGKNIIGYLHRAVKPANQLKLLEDA-VVIYRITRAPDRRVWYVDTGNM-- 292 (524) T ss_pred ccccCCCcceecc-hhheeeeeccceeC--CCCceeccchhhhHHHHhhhHHHhh-HHHHhhhccccceEEEEecCCC-- Confidence 11 122233 34444332 11111 1122235566666666554444442 2233334566666766654322 Q ss_pred cccchhccHHHHHHHHHHHHHHh-----cC--cccCc--ccc----c-----CCCceeeeccC--ChhhHHHHHHHHHHH Q lcl|Aclame:pro 318 GDIYPQLSREQLESIQRQLQAIM-----MG--DYTQV--PIL----S-----GGKFTWIDFKG--KRRDMQFKELAEFVA 377 (945) Q Consensus 318 ~k~~~~LS~Eq~erlKe~we~~~-----sG--~Nagk--p~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~~~ 377 (945) |..-.++=...+...+++.. .| .+..+ .|+ | +.|.+.+.+.- +.-+++ -.+|.. T Consensus 293 ---Pk~KAeqYl~~im~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~ 366 (524) T protein:vir:10 293 ---PARKAAEHMQHVMNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNME---DVRWFR 366 (524) T ss_pred ---CchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHH---HHHHHH Confidence 11111122222222222221 12 11111 111 1 23566666543 333443 456788 Q ss_pred HHHHHHhcCChhhcccccCC--C---cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cc----cceeE Q lcl|Aclame:pro 378 RKICAVYQVSPQDVGILEGS--N---KATAEVMASLTKAKGLEPLMATISKGFDEVVSEF---------RN----EKDIK 439 (945) Q Consensus 378 eeIA~aFGVPP~lLG~~e~g--T---~SN~Eqq~~~F~~~tL~Pll~~IEqeLn~kL~~~---------~~----~~g~~ 439 (945) +...++++||.+-+.....+ + .+.+.-.-..| ...+.-+..++...+...|... ++ ...+. T Consensus 367 kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF-~KFI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~ 445 (524) T protein:vir:10 367 QALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTF-AKFIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIK 445 (524) T ss_pred HHHHHHhCCchhhcCCCCCccccccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcce Confidence 99999999999999322111 1 12222222233 3345556666666555444222 22 23456 Q ss_pred EEeechhhcC-------HHHHHHHHHHHHh-CC-CcCHHHHHHH-HhCCCCCCccccccccccccccccchhhccCCCCc Q lcl|Aclame:pro 440 LWFKEDDLEK-------ERDWWNIIQGQLN-TG-FRSINEARME-KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPP 509 (945) Q Consensus 440 f~fd~~~l~D-------~kerae~~~~~v~-~G-imT~NEaRe~-lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~ 509 (945) ++|..+..-. +..|+.+++.+-. .| .++.+=+|+. +.+.-.+ .......-+...+.+ T Consensus 446 ~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDee-------------i~~~~k~I~~E~k~~ 512 (524) T protein:vir:10 446 IEFHRDSYFTELKEAEILERRINMLTMAEPFIGKYISHRTAMKDILQMTDEE-------------IEQEAKQIEEESKEA 512 (524) T ss_pred EEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHH-------------HHHHHHHHHHHhhcC Confidence 6676554432 2344444443322 11 2233334332 2221100 000000000000000 Q ss_pred ccccccCCCCCCCCCC Q lcl|Aclame:pro 510 QLAQAMADQPSQQGGG 525 (945) Q Consensus 510 ~~~~~~~d~~~~~~g~ 525 (945) -.+++.++. .+- T Consensus 513 ~~~~~~~~~----~~f 524 (524) T protein:vir:10 513 RFQDPDQEQ----EDF 524 (524) T ss_pred CCCCCchhh----hcC Confidence 000000000 000 No 235 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=81.13 E-value=0.089 Score=26.36 Aligned_cols=371 Identities=10% Similarity=0.024 Sum_probs=139.2 Q ss_pred ccc--CcccceeccccCCcccchhhhhhHHhh-----------------------------------hccHHHHHHHHHH Q lcl|Aclame:pro 92 FEY--SPESLMYLPSISDPDAFFLINLFRKYR-----------------------------------FNNDSKLIKVSEI 134 (945) Q Consensus 92 ~~~--s~~sl~~lps~s~p~~~~~~~v~~~~A-----------------------------------m~nsaV~aCV~iI 134 (945) ++. ..+-+..+-.--.... .......+++ +.++-....|+.. T Consensus 1 ~~~e~~~~~i~~~~~~~~~~~-~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~ 79 (471) T protein:vir:10 1 MEIEVIKKIISSQMVKHGKFV-SQAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQK 79 (471) T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccccccccchhhhhcccccccccccccccccceeccchhHHHHHhh Confidence 110 0000000000000000 0000000111 0111122222322 Q ss_pred HHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecC-CCeE Q lcl|Aclame:pro 135 PKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE-QGNL 213 (945) Q Consensus 135 A~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~-~G~p 213 (945) ++-+-+-|..+- .+. ......+..++. |. +......+..+.+.+|.+|..+.++. +|++ T Consensus 80 ~~yl~G~p~~~~---~~~--------~~~~~~l~~~~~--n~-------~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~~ 139 (471) T protein:vir:10 80 KAYALTYPPTFD---VDD--------KKVNDMIVDVLG--DD-------YERISKQLCVNAGNAGIAWLHVWKDASDNSF 139 (471) T ss_pred hhhhcccCceec---cCC--------hHHHHHHHHHHh--cC-------HHHHHHHHHHHHhhCCeEEEEEEeeCCCCee Confidence 222223333221 000 000011111111 21 12234556778889999998888875 4664 Q ss_pred EEEEEcCCceeEEEEcCCCc--eEE--EEEEee--CCce----eeeecccceeeeeecc--------------------- Q lcl|Aclame:pro 214 VAITPVDGTTIKPILSEDTG--IVV--GYVQEV--DGAI----VAHFDKRDVVLFRQNL--------------------- 262 (945) Q Consensus 214 veL~pLdPs~Vtv~~d~dG~--~~~--~Yv~~~--dG~~----~~~~~a~DVIh~r~n~--------------------- 262 (945) .+..++|..+.++.++.+. ... +|+... .++. ...+....+.|++... T Consensus 140 -~~~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (471) T protein:vir:10 140 -RYACVDSKEVIPIYSKSLDKKSIGVLRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNG 218 (471) T ss_pred -EEEEEcccceEEEEcCCCCCceEEEEEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccc Confidence 6888999999888765432 211 222111 1111 1122333333332110 Q ss_pred ---------CCCCc-------cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccH Q lcl|Aclame:pro 263 ---------TPDVY-------MYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSR 326 (945) Q Consensus 263 ---------~~d~~-------~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~ 326 (945) ++.+. ....|.|-+......++....+....++.+... +.|-.++ ++.. ....+ T Consensus 219 ~~~~~~~~~~~~g~iPvv~~~n~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~-~~~~lv~--~g~~-------~~~~~ 288 (471) T protein:vir:10 219 DRSSDNSFKHDFGLVPFIPFKNNEIETNDLKPIKDLVDVYDKVFSGFVNDTDDV-QEVIFVL--TNYG-------GQDKQ 288 (471) T ss_pred cccccccccCCCCceeEEEeccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh-hCceeee--ecCC-------ccccc Confidence 00000 001244555544444444333332233333222 2343333 2211 11111 Q ss_pred HHHHHHHHHHHHHhcCccc-CcccccCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHH Q lcl|Aclame:pro 327 EQLESIQRQLQAIMMGDYT-QVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVM 405 (945) Q Consensus 327 Eq~erlKe~we~~~sG~Na-gkp~VL~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq 405 (945) +.. ..+..... -+. +...--+.+++|..-. ..+..+....+...+.|...-++|..-.+ ..|+-|+ .+. T Consensus 289 ~~~----~~~~~~~~-i~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~~~I~~~s~tp~~~~~--~~gn~Sg-~Al 358 (471) T protein:vir:10 289 EFL----EDLKRYKM-IKMDNDGMGDQSGVTTIAID--IPTEARNLILERTKKQIFISGQGVNPETD--KLGNSSG-VAL 358 (471) T ss_pred hhH----HHhhcCCe-EEecCCCCccCccceEEeec--CChHHHHHHHHHHHHHHHHHhCCcCCCcc--cccCccH-HHH Confidence 111 11111100 000 0000012345554433 33455667788889999999999865322 1123222 111 Q ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHH Q lcl|Aclame:pro 406 A-------------SLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEAR 472 (945) Q Consensus 406 ~-------------~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaR 472 (945) . +..+...++-.++.+...+ .......+.+.|......|..+.++.+.++ .|+++...+. T Consensus 359 k~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~-----~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~ 431 (471) T protein:vir:10 359 KFLYSLLELKAGNMETQFRSGYATLVKMILKHL-----GLSDKLKIKQTWTRNSINNDTEMAQVVSTL--ATITSRENVA 431 (471) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccCCCceeEEEeCCCCCCCHHHHHHHHHHH--hccCchHHHH Confidence 1 1112222222222222211 122344678899988888999999988876 5789887777 Q ss_pred HHHhCCCCCCccccccccccccccccchhhccCC-CCcccccccCCCCCCCCCCCCCCc Q lcl|Aclame:pro 473 MEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGA-MPPQLAQAMADQPSQQGGGVDENS 530 (945) Q Consensus 473 e~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a-~~~~~~~~~~d~~~~~~g~~dd~e 530 (945) ++++. +++.+.- ++....+....+ ..+.......+. +.+ T Consensus 432 ~~~p~--v~D~~~E--------~eri~~E~~~~~~~~~~~~~~~~~~---------e~~ 471 (471) T protein:vir:10 432 KSNPI--VEDWQDE--------LRLQKAEQEGRSEKLYDMEEVEHES---------EVE 471 (471) T ss_pred HhCCC--CCCHHHH--------HHHHHHHHHHHHhcccccCCCCCcc---------ccC Confidence 66533 3221110 000000000000 000011111110 000 No 236 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=78.27 E-value=0.12 Score=25.71 Aligned_cols=401 Identities=13% Similarity=0.063 Sum_probs=141.6 Q ss_pred eeeeeecce------eeecccccccc----------cc--ccCCCC--CcccccCcccceeccccCCcccchhhhhhHHh Q lcl|Aclame:pro 61 SIIIFRKNQ------VLKKEKIIVPY----------NH--QEPPFK--FNLFEYSPESLMYLPSISDPDAFFLINLFRKY 120 (945) Q Consensus 61 ~~~~~k~n~------l~kK~K~i~p~----------~~--r~pp~~--f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~ 120 (945) -|=||.-|. +|+.++-.... .+ +.+-.. ...+.+...-+...+... ............ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~--~~~~~~~~~~~~ 78 (468) T protein:vir:96 1 MIDIFWPNEKPYHERVVEQIKPQYETQEEMILRLITKHKENVEDITVGERYYNHQPDVLFNAPKRN--VKGEIDPFKPDW 78 (468) T ss_pred CccccCCcCceeehheeecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc--cccccccccccc Confidence 222222211 11100000000 00 000000 000000000000000000 000000000001 Q ss_pred hhccHHHHHHHHHHHHhhccCceEEEEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 121 RFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDR 200 (945) Q Consensus 121 Am~nsaV~aCV~iIA~~IAsLP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gn 200 (945) .+..+-....|+..+.-+-+-|..+- .+. ......+..++. |. |. .....+..+.+.+|. T Consensus 79 ki~~n~~~~Iv~~~~~~l~g~p~~~~---~~d--------~~~~~~l~~~~~--n~------~~-~~~~~~~~~~~~~G~ 138 (468) T protein:vir:96 79 RMYTNYHQNLVDQKVAYAVANPVTYG---TED--------EKSLKTIQEVLN--HK------WD-DKLVDILTAASNKGV 138 (468) T ss_pred ccccchHHHHHHHHHhhhccCCceec---cCC--------hHHHHHHHHHHh--cC------HH-HHHHHHHHHHhhcCe Confidence 11122333344444444434444421 010 011223344443 21 11 223456678889999 Q ss_pred eEEEEEecCCCeEEEEEEcCCceeEEEEcCC--CceE--EEEEEeeCCc-eeeeecccceeeeeecc------------- Q lcl|Aclame:pro 201 GAIVKIRDEQGNLVAITPVDGTTIKPILSED--TGIV--VGYVQEVDGA-IVAHFDKRDVVLFRQNL------------- 262 (945) Q Consensus 201 a~i~iird~~G~pveL~pLdPs~Vtv~~d~d--G~~~--~~Yv~~~dG~-~~~~~~a~DVIh~r~n~------------- 262 (945) +|..+..+.+|++ .+..++|..+.++.++. +... .+|+ ..++. ....+....+.+++... T Consensus 139 ~~~~v~~d~~~~~-~i~~~~p~~~~~v~~~~~~~~~~~~ir~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (468) T protein:vir:96 139 EWIQPYVDEQGEF-KTFRVPAEQAIPIWTNKERDELKAFIRLY-ELDGGERVEYWTANDVTFYELKDGQLIPDYYQGEEH 216 (468) T ss_pred EEEEEEEcCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEE-EecCceEEEEEeCCeEEEEEEcCCceeecccccccc Confidence 9988888888875 58888999988876532 2221 1121 12221 11222222222221100 Q ss_pred -----------CCCC-------ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhc Q lcl|Aclame:pro 263 -----------TPDV-------YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQL 324 (945) Q Consensus 263 -----------~~d~-------~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~L 324 (945) ++.+ .....|.|-++.+...++....+.....+.+... +.|-.++. +.. . T Consensus 217 ~~~~~~~~~~~~~~~~iPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~-~~p~lv~~--g~~---------~ 284 (468) T protein:vir:96 217 VQAHYYVGNKSMSWNRVPFIPFKNNPQEVSDLFMYKTIIDAMDKRLSDTQNTFDEA-TELIYVLK--GYE---------G 284 (468) T ss_pred cccceeeccccccCCcccEEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh-cCceeeee--cCC---------c Confidence 0000 0012355555544444444333333233333222 34544432 211 0 Q ss_pred cHHHHHHHHHHHHHHhcCcccCccccc--CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccH Q lcl|Aclame:pro 325 SREQLESIQRQLQAIMMGDYTQVPILS--GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATA 402 (945) Q Consensus 325 S~Eq~erlKe~we~~~sG~Nagkp~VL--~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~ 402 (945) . ..+.+....+ .++++.+ ++|.+...++.......+....+...+.|...-++|..--+ ...++-| . T Consensus 285 ~--~~~~~~~~~~-------~~~~i~~~~d~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~~~n~S-g 353 (468) T protein:vir:96 285 E--DLEEFMYNLK-------YYKAINVDGDGSGGVDTIQIDVPVQSAKEYLDMLRDYVIEFGQGVDFQQD-KFGNSPS-G 353 (468) T ss_pred c--ccchhhhhhh-------cCceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccccc-ccccchH-H Confidence 0 1111111111 1122322 22333333333334455667788889999999999854321 1112222 2 Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHH-------hhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHH Q lcl|Aclame:pro 403 EVMASLT--KAKGLEPLMATISKGFDE-------VVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARM 473 (945) Q Consensus 403 Eqq~~~F--~~~tL~Pll~~IEqeLn~-------kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe 473 (945) ++....+ ......-....++..+.+ .+-.......+.+.|+.....|..+.+++ +.+.|+++.-.+.+ T Consensus 354 ~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~i~f~~~~p~d~~e~a~~---~~~~g~iS~et~i~ 430 (468) T protein:vir:96 354 IALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLSIKVQDVEITFNFNVMVNELEQSQI---GVNSQYLSKETVVT 430 (468) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCCcCHHHHHHH---HHhcCCCchHHHHH Confidence 2211111 001111112222222221 11111223356778877777777666654 45679999887877 Q ss_pred HHhCCCCCCccccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCCCCccccc Q lcl|Aclame:pro 474 EKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPS 534 (945) Q Consensus 474 ~lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~dd~e~~~s 534 (945) .++. +++.+.-+- .... .+... ... + ..- ++ .+++++ + T Consensus 431 ~l~~--v~D~~~E~~-----ri~~----E~~~~-~~~------~-~~~-~~-~~~~~~--~ 468 (468) T protein:vir:96 431 NHPW--VDDPVAEME-----RIDQ----EELAL-PSI------E-EGL-NG-KENNEP--T 468 (468) T ss_pred hCCC--CCCHHHHHH-----HHHH----HHHHH-HHH------h-hcc-CC-CCCCCC--C Confidence 6532 222111000 0000 00000 000 0 000 01 111111 1 No 237 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=57.06 E-value=0.44 Score=22.52 Aligned_cols=361 Identities=10% Similarity=0.007 Sum_probs=135.8 Q ss_pred cCcccceec-cccCCcccchhhhhhHHhh---------------------------hccHHHHHHHHHHHHhhccCceEE Q lcl|Aclame:pro 94 YSPESLMYL-PSISDPDAFFLINLFRKYR---------------------------FNNDSKLIKVSEIPKKLTSKELEI 145 (945) Q Consensus 94 ~s~~sl~~l-ps~s~p~~~~~~~v~~~~A---------------------------m~nsaV~aCV~iIA~~IAsLP~~V 145 (945) -..+.+..+ ..... .. -......+.+ +..+-....|+..++-+-+-|+.+ T Consensus 1 l~~~~i~~~i~~~~~-~~-~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~ 78 (451) T protein:vir:10 1 MELEKIRAIISADAA-RR-QEILQAKSYYYNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDEKASYMFTYPVLF 78 (451) T ss_pred CCHHHHHHHHHHHHH-HH-HHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHhhhhheeccccee Confidence 001111100 00000 00 0000000000 111222233333333333334332 Q ss_pred EEeccCcccccccchhhcccHHHHHHhccCccCChHHHHHHHHHHHHHHHhccCCeEEEEEecCCC-------eEEEEEE Q lcl|Aclame:pro 146 YKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQG-------NLVAITP 218 (945) Q Consensus 146 yRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~mT~~eFwetli~~Lv~dlLl~Gna~i~iird~~G-------~pveL~p 218 (945) . . ++.. ....+.+-+.+ |.. ......+..+.+.+|.+|..+.++... ....+.. T Consensus 79 ~-~-~~~~---------~~~~~~~~~~~-n~~-------~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~ 139 (451) T protein:vir:10 79 D-I-DNNK---------ELNEKVTDVLG-NEF-------TRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGV 139 (451) T ss_pred e-c-CCcH---------HHHHHHHHHhc-cCH-------HHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEE Confidence 1 0 0000 00011111111 211 123345667788999999888777641 1345777 Q ss_pred cCCceeEEEEcCC--CceEE--EEEEeeC--Cc--------eeeeecccceeeeeeccCC--------------CC---- Q lcl|Aclame:pro 219 VDGTTIKPILSED--TGIVV--GYVQEVD--GA--------IVAHFDKRDVVLFRQNLTP--------------DV---- 266 (945) Q Consensus 219 LdPs~Vtv~~d~d--G~~~~--~Yv~~~d--G~--------~~~~~~a~DVIh~r~n~~~--------------d~---- 266 (945) ++|..+.++.++. +...+ +|+.... ++ ....+..+.+.++...... .+ T Consensus 140 i~p~~~~~vydd~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 219 (451) T protein:vir:10 140 VNTEEIIPIYRNGIERELEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSCCGSQIEHITVQHRFNSVPF 219 (451) T ss_pred EcccceEEEEcCCCCCceEEEEEEEEeeecccccccceEEEEEEEEeCCeEEEEEecccCccccccccccccCCCCeeeE Confidence 8998888776543 22211 1211111 10 0112222222222110000 00 Q ss_pred ---ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccccccccchhccHHHHHHHHHHHHHHhcCc Q lcl|Aclame:pro 267 ---YMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGD 343 (945) Q Consensus 267 ---~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~ 343 (945) .....|.|-++.....++....+....++.+... +.|-.+ .++.. +..+.+....+ ... T Consensus 220 v~~~nn~~~~~d~e~v~~liDa~~~~~S~~~~~~~~~-~~~~l~--~~g~~-------~~~~~~~~~~~----~~~---- 281 (451) T protein:vir:10 220 VEFSNNIKKQSDLSKYKKILDLYDRVMSGFANDLEDI-QQIIYI--LENFG-------GEDTSEFLKEL----KRY---- 281 (451) T ss_pred EEeccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh-ccceee--eecCC-------cccchhhHHHH----hhC---- Confidence 0011244444444444443333322223332222 233333 32211 11122222222 111 Q ss_pred ccCccccc-------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcccccCCCcccHHHHH---------- Q lcl|Aclame:pro 344 YTQVPILS-------GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMA---------- 406 (945) Q Consensus 344 Nagkp~VL-------~~G~k~~pLs~sp~D~QflE~rk~~~eeIA~aFGVPP~lLG~~e~gT~SN~Eqq~---------- 406 (945) +++.+ +++++|..-. ..+..+.+..+...+.|...-++|.. ....-||-|+ .+.. T Consensus 282 ---~~i~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~~~I~~~s~~p~~--~~~~~gn~Sg-~Alk~~~~~l~~k~ 353 (451) T protein:vir:10 282 ---KTIKTETDSEGDSGGLKTMQIE--IPTEARKIILEILKKQIYESGQGLQQ--DTENFGNASG-VALKFFYRKLELKS 353 (451) T ss_pred ---CeEEecCcCCccCCcceEEeec--CCHHHHHHHHHHHHHHHHHHhCcccc--cccccccccH-HHHHHHHHHHHHHH Confidence 11111 2345554433 34455667788889999999999853 2211223222 1211 Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhccccccceeEEEeechhhcCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCCCCCc Q lcl|Aclame:pro 407 ---SLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWG 483 (945) Q Consensus 407 ---~~F~~~tL~Pll~~IEqeLn~kL~~~~~~~g~~f~fd~~~l~D~kerae~~~~~v~~GimT~NEaRe~lGlpPveGG 483 (945) ...+..+++-.++.+...+ .......+.+.|+.....+..+.++++.++. |+++...+.+.++. +++. T Consensus 354 ~~k~~~f~~~l~~~~~li~~~~-----~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl~--g~iS~et~~~~~p~--v~d~ 424 (451) T protein:vir:10 354 GLLETEFRTSFDKLIKAILYFL-----GVTDYKKIQQTYTRNMMSNDLEDADIATKSV--GIIPTKIILRHHPW--VDDV 424 (451) T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----CCCCccceeEEecCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCC--CCCH Confidence 1112222222222222211 1122345778898888889999999988884 78888777776543 2211 Q ss_pred cccccccccccccccchhhccCCCCcccccccCCCCCCCCCCCC Q lcl|Aclame:pro 484 DVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVD 527 (945) Q Consensus 484 D~~l~~~n~~~ped~~a~~~~~a~~~~~~~~~~d~~~~~~g~~d 527 (945) +... .....+......+..+.-.+ -.| T Consensus 425 ~~e~----------~~~~ee~~~~~~~~~~~~~~-------~~~ 451 (451) T protein:vir:10 425 EEAE----------KLYLEEKKIQASKVSDDYNN-------FTE 451 (451) T ss_pred HHHH----------HHHHHHHHHHHHHHHhhcCC-------CCC Confidence 1100 00000000000000000000 000 No 238 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=45.00 E-value=0.79 Score=21.16 Aligned_cols=435 Identities=13% Similarity=0.095 Sum_probs=170.1 Q ss_pred hchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeeecceeeeccccccccccccCCCCCccccc--Ccccce--eccc Q lcl|Aclame:pro 29 ANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEY--SPESLM--YLPS 104 (945) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~l~kK~K~i~p~~~r~pp~~f~L~~~--s~~sl~--~lps 104 (945) -|+-.| +.+ |-+ +=++- ...++-.+-.+++|.....-......... +....+ .+.. T Consensus 1 ~~~~~l------------f~f----~~~--~d~~~--~~~~~~~~~~s~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~d~ 60 (516) T protein:vir:10 1 MKFLDL------------FKF----WDR--VDQNE--YDERLKQGHESIATPKKDDGATEIEAREGESSYNALMQQFFGI 60 (516) T ss_pred CCchHh------------ccc----ccc--hhhHH--HHhhhcCCCCcccCCCCccCceeeecCcccccccceeeeeecc Confidence 111111 110 111 00000 01111112222111111100000000000 000110 0010 Q ss_pred c-CCcccchhhhhhHHhhhccHHHHHHHHHHHHhhcc-----CceEEEEeccCcccccccchhhcccHHHHHHhccCccC Q lcl|Aclame:pro 105 I-SDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYF 178 (945) Q Consensus 105 ~-s~p~~~~~~~v~~~~Am~nsaV~aCV~iIA~~IAs-----LP~~VyRrtedg~ee~~~r~~a~dhpL~~LL~rPNp~m 178 (945) - ...+..-+++.+|..+ .+|.|..||+.|.+.+.- -|..|- .++.....+.+.. .......+++--|-.. T Consensus 61 ~~~~~~~~~LI~~YR~ma-~~pEvd~Av~eIvneaiv~d~~~~pV~l~--l~~~e~s~sik~k-I~eeF~~Il~ll~F~~ 136 (516) T protein:vir:10 61 DNNISGTKDLINTYRQLT-NNPEVERAVANIVNEAVVYEKGHKVVSLD--LDDTEFSSSIKDK-ILEEFDEICRLLDASR 136 (516) T ss_pred cCccccHHHHHHHHHHhh-hccchhHHHHHhhcceeEecCCCceEEEE--ecccccchHHHHH-HHHHHHHHHHHhccch Confidence 0 1112233556666654 789999999999987752 233321 1121111121111 1122223333224444 Q ss_pred ChHHHHHHHHHHHHHHHhccCCeEEEEEec-CCCeEEEEEEcCCceeEEEEcC-----CCc-----eEEEEEEe------ Q lcl|Aclame:pro 179 SEVNSWEYLLGMVLDDILTIDRGAIVKIRD-EQGNLVAITPVDGTTIKPILSE-----DTG-----IVVGYVQE------ 241 (945) Q Consensus 179 T~~eFwetli~~Lv~dlLl~Gna~i~iird-~~G~pveL~pLdPs~Vtv~~d~-----dG~-----~~~~Yv~~------ 241 (945) ++++. ++.++..|..|+.++.+ ....+.+|++|+|..|+.++.- +|. ....|.|. T Consensus 137 ~~~~~--------fR~WYVDgRi~fhKiid~~k~GI~elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~ 208 (516) T protein:vir:10 137 KLDTL--------FRRWYIDSRIFFHKIMPNPKEGIVELRRLDPRHVEYYREIVTSDVGGTSVVKGYREFFVYTTGNEGY 208 (516) T ss_pred hhhHH--------HHhhhhcceEEEEEEecCcccceeeeeeeCCcceeeEEeeecccCcchhhhhceeeeeeeecCccce Confidence 55554 44456788888875554 3556899999999999765432 221 11123332 Q ss_pred -eCCc-----eeeeecccceeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccccc Q lcl|Aclame:pro 242 -VDGA-----IVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSY 315 (945) Q Consensus 242 -~dG~-----~~~~~~a~DVIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~k~g~~ 315 (945) .+|+ ....+ +.+.|++.+-.--+. .++.=+|-+..|...+....-++.. .-.++=..++-+-|+...-|.. T Consensus 209 ~~~g~~~~~~~~ikI-~~daI~y~hSGl~d~-~~~~i~syLhkAiKp~NQLkm~EDA-lVIYRitRAPeRRvFYIDVGnL 285 (516) T protein:vir:10 209 AYNGRLFEPNTRIKI-PRSAIVYAHSGLQDC-SDRGIVGYLHNAVKPANQLKLLEDA-LVIYRITRAPERRVFYIDVGNM 285 (516) T ss_pred eccccccCCCCceec-chhheeeeecCcccC-CCCceeceehhhhHhHHhhHHHHhh-HHHHhhhccccceEEEEecCCC Confidence 1121 11222 334444432111111 1112245566666666554444443 2233334566666776654322 Q ss_pred cccccchhccHHHHHHHHHHHHHHh-----cC--cccCc--ccc----c-----CCCceeeeccC--ChhhHHHHHHHHH Q lcl|Aclame:pro 316 KEGDIYPQLSREQLESIQRQLQAIM-----MG--DYTQV--PIL----S-----GGKFTWIDFKG--KRRDMQFKELAEF 375 (945) Q Consensus 316 ~~~k~~~~LS~Eq~erlKe~we~~~-----sG--~Nagk--p~V----L-----~~G~k~~pLs~--sp~D~QflE~rk~ 375 (945) |..-.++=...+...+++.. .| .+..+ .|+ | +.|.+.+.+.- +.-++ +-.++ T Consensus 286 -----Pk~KAeqYl~~iM~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem---~DV~Y 357 (516) T protein:vir:10 286 -----PNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVTSLPGAQTMGEM---DDVRW 357 (516) T ss_pred -----CchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChH---HHHHH Confidence 11111222222222222221 12 11111 111 1 23566666543 33344 34567 Q ss_pred HHHHHHHHhcCChhhcccccCCCc---ccHHHH--HHHHHHHHHHHHHHHHHHHHHHhhc---------cccc----cce Q lcl|Aclame:pro 376 VARKICAVYQVSPQDVGILEGSNK---ATAEVM--ASLTKAKGLEPLMATISKGFDEVVS---------EFRN----EKD 437 (945) Q Consensus 376 ~~eeIA~aFGVPP~lLG~~e~gT~---SN~Eqq--~~~F~~~tL~Pll~~IEqeLn~kL~---------~~~~----~~g 437 (945) ..+...++++||.+-++...+++. .++|-. -..| ...+.-+..++...+...|. ..++ ... T Consensus 358 F~kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EItRDEiKF-~KFI~rLR~rFs~lF~~~L~~qLilKgIit~eeW~~i~~~ 436 (516) T protein:vir:10 358 FNKKLYEALRIPLSRMPRDDGGMVIGGQDMAITRDELDF-RKFIVQLQHNFEEIFLDPLKTNLIYKKIILESEWEEQINN 436 (516) T ss_pred HHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhhc Confidence 889999999999999975444321 112211 1223 33444455555444443322 1112 224 Q ss_pred eEEEeechhhcC-------HHHHHHHHHHHH--hCCCcCHHHHHHH-HhCCCCCCccccccccccccccccchhhccCCC Q lcl|Aclame:pro 438 IKLWFKEDDLEK-------ERDWWNIIQGQL--NTGFRSINEARME-KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAM 507 (945) Q Consensus 438 ~~f~fd~~~l~D-------~kerae~~~~~v--~~GimT~NEaRe~-lGlpPveGGD~~l~~~n~~~ped~~a~~~~~a~ 507 (945) +.++|..+..-. +..|+.+++.+- -+.+++.+=+|+. +.+.-.+ .. .++.+-+. ..+ T Consensus 437 I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~~yi~k~ILr~tDee---i~--------~~~k~I~~--E~~ 503 (516) T protein:vir:10 437 IKVNFHQDSYYTELKDIETLRQRVDALSQIEPYVGKYVSHDYVMKNILQMTDEQ---IA--------QEEKQIEK--EAN 503 (516) T ss_pred ceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhH---HH--------HHHHHHHH--hhh Confidence 566666554432 234555554443 2345555555543 3332111 00 00000000 000 Q ss_pred CcccccccCCCCCCCCCC Q lcl|Aclame:pro 508 PPQLAQAMADQPSQQGGG 525 (945) Q Consensus 508 ~~~~~~~~~d~~~~~~g~ 525 (945) .+-.. + +.++.+- T Consensus 504 ~~~~~----~-p~~e~~f 516 (516) T protein:vir:10 504 VKRFQ----N-PENEDDF 516 (516) T ss_pred CCCCC----C-CCccccC Confidence 00000 0 0000000 No 239 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=22.82 E-value=2.4 Score=18.51 Aligned_cols=415 Identities=10% Similarity=-0.007 Sum_probs=138.5 Q ss_pred eeeeeccee----eeccccc-----cccccccCCCCCcccccCcccceeccccCCcccchhhhhhHHhhhccHHHHHHHH Q lcl|Aclame:pro 62 IIIFRKNQV----LKKEKII-----VPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVS 132 (945) Q Consensus 62 ~~~~k~n~l----~kK~K~i-----~p~~~r~pp~~f~L~~~s~~sl~~lps~s~p~~~~~~~v~~~~Am~nsaV~aCV~ 132 (945) .+. +-.+ +|+.-.. .+...+... +.++ .+|+...++.. .+-......-.++--.|++ T Consensus 1 ~~~--~~~~~~~~~~~r~~~l~~~R~~~e~~w~e----~~~y------~lP~~~~~~~~--~~~~~~~~~~dst~~~a~~ 66 (522) T protein:vir:94 1 MAE--REGFAAEGAKAVYDRLKNGRQPYETRAQN----CAAV------TIPSLFPKESD--NSSTEYTTPWQAVGARCLN 66 (522) T ss_pred Ccc--cchhhHHHHHHHHHHHHHHhhHHHHHHHH----HHHH------hcccccCCCCC--cccccccccccccHHHHHH Confidence 110 1110 0000000 000000000 0011 11211111100 0000111122344455667 Q ss_pred HHHHhhccC-----ceEEEEeccCccc-ccccchhhcccHHHHHHh----ccCccCChHHHHHHHHHHHHHHHhccCCeE Q lcl|Aclame:pro 133 EIPKKLTSK-----ELEIYKHIEDKHV-NYYLKRIRDARNILEFLE----RPDPYFSEVNSWEYLLGMVLDDILTIDRGA 202 (945) Q Consensus 133 iIA~~IAsL-----P~~VyRrtedg~e-e~~~r~~a~dhpL~~LL~----rPNp~mT~~eFwetli~~Lv~dlLl~Gna~ 202 (945) .+|..+-+. ||. |..-.+.. ..........+++...|. .-........|... +..+..++..+|++. T Consensus 67 ~Las~l~~~ltP~~~WF--rl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~-~~~~~~~L~~~G~a~ 143 (522) T protein:vir:94 67 NLAAKLMLALFPQSPWM--RLTVSEYEAKTLSQDSEAAARVDEGLAMVERVLMAYMETNSFRVP-LFEALKQLIVSGNCL 143 (522) T ss_pred HHHHHHHhhcCCCCccc--ccccchhhhhccCcccchhHHHHHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHhhCcEe Confidence 777666432 442 21111000 000000011112222221 11112222233333 344567888899999 Q ss_pred EEEEecCCCeEEE--EEEcCCceeEEEEcCCCceEEEE----------------------------------EEeeCCce Q lcl|Aclame:pro 203 IVKIRDEQGNLVA--ITPVDGTTIKPILSEDTGIVVGY----------------------------------VQEVDGAI 246 (945) Q Consensus 203 i~iird~~G~pve--L~pLdPs~Vtv~~d~dG~~~~~Y----------------------------------v~~~dG~~ 246 (945) .++..+..|.+.. .+|| .++.+..+..|++--.| ++..+++. T Consensus 144 l~~~~~~~~~~~~~~~~pl--~~y~v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~ 221 (522) T protein:vir:94 144 LYIPEPEQGTYSPMRMYRL--VSYVVQRDAFGNILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQDDEY 221 (522) T ss_pred EeeeccCCCceeeEEEEEc--ceEEEeeCCCcCeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEEEeeCCce Confidence 8887777666544 4555 45555666666541111 00000100 Q ss_pred eeeec--------------ccc--eeeeeeccCCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEe Q lcl|Aclame:pro 247 VAHFD--------------KRD--VVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAI 310 (945) Q Consensus 247 ~~~~~--------------a~D--VIh~r~n~~~d~~~~GyGlSPI~aa~~~I~~~~aaee~~a~~F~nnGa~PsGILs~ 310 (945) ..... .++ .+..|....++ ..||.||.+.++-.+.......+.....-.. .+.|-.++.. T Consensus 222 ~~~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~~~g---e~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~-~~~p~~~v~~ 297 (522) T protein:vir:94 222 LRYEEVEGIEVTGTDGSYPLTACPYIPVRMVRLDG---EDYGRSYCEEYLGDLNSLETITEAITKMAKV-ASKVVGLVNP 297 (522) T ss_pred eEEeeccCceecccCCCCccccCCceeeeeeecCC---CccccchHHHHHHHHHHHHHHHHHHHHHHHH-HhCCceeecc Confidence 00000 000 11222222222 2389999999998888877777776665544 3444433321 Q ss_pred ccccccccccchhccHHHHHHHHHHHHHHhcCcccCcccccCCCceeeeccCChhhHH-HHHHHHHHHHHHHHHhcCChh Q lcl|Aclame:pro 311 EPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQ-FKELAEFVARKICAVYQVSPQ 389 (945) Q Consensus 311 k~g~~~~~k~~~~LS~Eq~erlKe~we~~~sG~Nagkp~VL~~G~k~~pLs~sp~D~Q-flE~rk~~~eeIA~aFGVPP~ 389 (945) ++ ..... +...|++...+.--++++...++...+ +.+ ..+..+..+..|.++|-+... T Consensus 298 -~g---------~~~~~----------~~~~~~~g~~v~g~~~~v~~~~~~~~~-~~~~~~~~i~~~~~rI~~af~~~~~ 356 (522) T protein:vir:94 298 -NG---------ITQPR----------RLNKAATGEFVAGRVEDINFLQLTKGQ-DFTIAKSVADAIEQRLGWAFLLNSA 356 (522) T ss_pred -cc---------cccch----------heeccCCceeecCCcccceeeeccccc-chhHHHHHHHHHHHHHHHHHhhhhh Confidence 11 11111 111222211111123445555554432 333 345567778889999976632 Q ss_pred hcccccCCCcccHHHH--HHHHHHHHHHHHHHHHHHHHH------------H-hhccccccceeEEEeechhhc-----C Q lcl|Aclame:pro 390 DVGILEGSNKATAEVM--ASLTKAKGLEPLMATISKGFD------------E-VVSEFRNEKDIKLWFKEDDLE-----K 449 (945) Q Consensus 390 lLG~~e~gT~SN~Eqq--~~~F~~~tL~Pll~~IEqeLn------------~-kL~~~~~~~g~~f~fd~~~l~-----D 449 (945) +..+.. .-++++. +..=....|.|.+.++++++- + -++|......+++++....-. + T Consensus 357 --~~~~~~-r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~v~~~s~La~~qr~~~ 433 (522) T protein:vir:94 357 --VQRNAE-RVTAEEIRYVAGELEATLGGVYSVQSQELQLPIVRVLMNQLQSAGMIPDLPKEAVEPTVSTGLEALGRGQD 433 (522) T ss_pred --ccCCCc-cccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccEEeeEecHHHHHHHHHH Confidence 211111 1122222 222233445555555444432 1 123333333466666433221 1 Q ss_pred HHHHHHHHHHHHhCC------CcCHHH----HHHHHhCCCCCCcccccccccccccccc-chhhccCCCCcccccccCCC Q lcl|Aclame:pro 450 ERDWWNIIQGQLNTG------FRSINE----ARMEKGLEPVPWGDVPFSGLRNWKPEDE-QAKAQQGAMPPQLAQAMADQ 518 (945) Q Consensus 450 ~kerae~~~~~v~~G------imT~NE----aRe~lGlpPveGGD~~l~~~n~~~ped~-~a~~~~~a~~~~~~~~~~d~ 518 (945) .+....++..+.+.+ -+..++ +.+.+|.||. +.+...++ .+.-++.. T Consensus 434 ~~~l~~~~~~ia~l~P~~~~~~id~d~~~~~~a~~~Gv~~~----------~ivr~~ee~~~~~~q~~------------ 491 (522) T protein:vir:94 434 LEKLTQAVNMMTGLQPLSQDPDINLPTLKLRLLNALGIDTA----------GLLLTQDEKIQRMAEQS------------ 491 (522) T ss_pred HHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHcCCChh----------hccCCHHHHHHHHHHHH------------ Confidence 111112222111111 011111 1111222110 00000100 00000000 Q ss_pred CCCCCCCCCCCccccchhHHHHHHHHHHHHhhhhh----hhhHHHHHh Q lcl|Aclame:pro 519 PSQQGGGVDENSSVPSEQKNAGLEVLRNLFKSLDA----NASENLKQV 562 (945) Q Consensus 519 ~~~~~g~~dd~e~~~se~k~a~~~~lr~~~k~l~a----~~~~~~~~~ 562 (945) ...+........-+.+.+ ...+.+.+. T Consensus 492 -----------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 522 (522) T protein:vir:94 492 -----------------SQQAVVQGASAAGANMGAAVGQGAGEDMAQA 522 (522) T ss_pred -----------------HHHHHHHHHHHHHHHhhhhhhcccchhhhcC Confidence 000000000000011111 000111111 Done!