Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Twort | Genbank acc : NC_007021 | Aclame index mge :1623

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae of Type1 (Read more about that Type)
Note that only the Adaptor was detected unambiguously

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 195

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	11	lcl\|Aclame:protein:vir:96666\|NCBI_annot:ORF016\|genbank:acc:YP_238545;genbank:gi:66391271;genbank:Gen	HHsearch (proba=100.00%)
Portal	8	lcl\|Aclame:protein:vir:96579\|NCBI_annot:ORF012\|genbank:acc:YP_238542;genbank:gi:66391267;genbank:Gen	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:96515\|NCBI_annot:ORF036\|genbank:acc:YP_238536;genbank:gi:66391291;genbank:Gen	Blast (e-value=1e-123)
MTP	21	lcl\|Aclame:protein:vir:96672\|NCBI_annot:ORF106\|genbank:acc:YP_238555;genbank:gi:66391358;genbank:Gen	Blast (e-value=8e-69)
Sheath	19	lcl\|Aclame:protein:vir:96586\|NCBI_annot:ORF011\|genbank:acc:YP_238553;genbank:gi:66391266;genbank:Gen	HHsearch (proba=100.00%)
Ad1	14	lcl\|Aclame:protein:vir:96671\|NCBI_annot:ORF032\|genbank:acc:YP_238548;genbank:gi:66391287;genbank:Gen	HHsearch (proba=98.21%)
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96666 protein:vir:99311 protein:vir:95603	Twort K G1	100 % 82 % 82 %
Portal	protein:vir:96579 protein:vir:99312 protein:vir:95599	Twort K G1	100 % 78 % 78 %
TermL	protein:vir:99333 protein:vir:95547 protein:vir:80633	K G1 A511	72 % 72 % 53 %
MTP	protein:vir:96672 protein:vir:99300 protein:vir:95739	Twort K G1	100 % 84 % 84 %
Sheath	protein:vir:96586 protein:vir:99306 protein:vir:95741	Twort K G1	100 % 75 % 75 %
Ad1	protein:vir:80320 protein:vir:1435 protein:vir:8104	phi644-2 phiE125 Che9c	15 % 15 % 13 %