Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiEF24C | Genbank acc : NC_009904 | Aclame index mge :1885

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae of Type1 (Read more about that Type)
Note that only the Adaptor was detected unambiguously

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 221

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	16	lcl\|Aclame:protein:vir:80835\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	12	lcl\|Aclame:protein:vir:80796\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	5	lcl\|Aclame:protein:vir:80755\|NCBI_annot:putative	Blast (e-value=0)
MTP	24	lcl\|Aclame:protein:vir:80710\|NCBI_annot:structural	Blast (e-value=1e-79)
Sheath	23	lcl\|Aclame:protein:vir:80779\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad1	18	lcl\|Aclame:protein:vir:80829\|NCBI_annot:hypothetical	HHsearch (proba=97.90%)
Hc1	41	lcl\|Aclame:protein:vir:80834\|NCBI_annot:putative	HHsearch (proba=73.46%)
Ne1	NOT FOUND
Tc1	7	lcl\|Aclame:protein:vir:80897\|NCBI_annot:hypothetical	HHsearch (proba=80.50%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80835 protein:vir:80491 protein:vir:63741	phiEF24C A511 P100	100 % 72 % 72 %
Portal	protein:vir:80796 protein:vir:63755 protein:vir:80644	phiEF24C P100 A511	100 % 64 % 63 %
TermL	protein:vir:80755 protein:vir:80633 protein:vir:63747	phiEF24C A511 P100	100 % 55 % 55 %
MTP	protein:vir:80710 protein:vir:80620 protein:vir:63764	phiEF24C A511 P100	100 % 75 % 72 %
Sheath	protein:vir:80779 protein:vir:80488 protein:vir:63742	phiEF24C A511 P100	100 % 65 % 65 %
Ad1	protein:vir:80320 protein:vir:1435 protein:vir:8104	phi644-2 phiE125 Che9c	12 % 11 % 13 %
Hc1	protein:vir:103282	JK06	16 %
Tc1	protein:vir:9880	315.5	18 %