Query lcl|Aclame:protein:vir:102722|NCBI_annot:hypothetical protein|genbank:acc:YP_874158;genbank:gi:118197765;genbank:GeneID:4495914 Match_columns 316 No_of_seqs 1 out of 4 Neff 1.0 Searched_HMMs 1612 Date Mon Dec 2 05:45:02 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_49 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_49_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:8104 Length: 170 # 78.8 0.032 2E-05 28.8 5.5 162 108-314 1-170 (170) 2 protein:vir:6589 Length: 310 # 5.7 12 0.0074 14.7 4.3 59 1-61 251-310 (310) 3 protein:vir:81013 Length: 310 5.7 12 0.0074 14.7 4.3 59 1-61 251-310 (310) 4 protein:vir:79647 Length: 435 4.3 8.6 0.0054 15.4 1.4 66 1-72 365-435 (435) 5 protein:vir:79544 Length: 70 # 3.7 16 0.0096 14.0 2.3 53 2-58 1-70 (70) 6 protein:vir:5657 Length: 307 # 2.3 29 0.018 12.5 4.4 57 1-60 248-307 (307) 7 protein:vir:195 Length: 115 # 2.3 6.1 0.0038 16.3 -1.6 104 1-133 1-115 (115) 8 protein:vir:106985 Length: 276 2.1 31 0.02 12.4 4.3 58 1-60 216-276 (276) 9 protein:vir:107900 Length: 311 2.0 34 0.021 12.2 4.7 58 1-60 252-311 (311) 10 protein:vir:104338 Length: 422 1.8 33 0.02 12.3 1.6 65 1-91 353-422 (422) No 1 >protein:vir:8104 Length: 170 # NCBI annotation: gp8 # Family: family:all:3238 # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817685;genbank:gi:29566116;genbank:GeneID:1259310 Probab=78.76 E-value=0.032 Score=28.80 Aligned_cols=162 Identities=18% Similarity=0.257 Sum_probs=96.1 Q ss_pred eccccchhhhcchhhHHHHhhcc------ccccccccchhccCCCCceeeehhhHHHHHHHHhhhccCCCCcCccceeEE Q lcl|Aclame:pro 108 VPGSLPFELLTNDQLNQWVSNIR------VAPNKIGDAERQDGKGTPLIITYYAPIITVYSLALAFTAPPGYEGKNLFFR 181 (316) Q Consensus 108 vpgslpfelltndqlnqwvsnir------vapnkigdaerqdgkgtpliityyapiitvyslalaftappgyegknlffr 181 (316) +-|-+-.+-.+..-|+-=..-+| |.|+-.-|..+-||.|-..|..=-.|++.|-|+-.- |.. T Consensus 1 ~~~~~a~~~~~q~~l~aA~a~vR~~cGwhv~P~v~d~t~~ldg~G~~vl~LPt~pvvsV~sV~~~-----G~~------- 68 (170) T protein:vir:81 1 MRGQFADNTEAQAAIDAVLAAARRWCGWHVSPVIIDDVMEVDGPGGRVLSLPTLNLVSVKSVVEL-----GYA------- 68 (170) T ss_pred CcccccCchHHHHHHHHHHHHHHHHhCCcccceecccEEEEeCCCCeeEECCCCcceeeEEEEEC-----Cee------- Confidence 77777666665555554344443 567766777899999999987766788777776322 111 Q ss_pred eecCceeeEEe-ccceeehHHHHHHHHhhccccCCccccccCCcCccCceEEEEeeecCCcCChH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 182 LYKPNEFYFYR-TGEIHIFPAVMARILSQTTSQDPLWGSQYGPIAPRIPQVIVIDYEFGYTDTPY-DLLEAVAIRAAMQF 259 (316) Q Consensus 182 lykpnefyfyr-tgeihifpavmarilsqttsqdplwgsqygpiapripqvividyefgytdtpy-dlleavairaamqf 259 (316) ....+|++.+ +|-+- ..-.-|..- +.-|.+-|.-||+++|- |-+++|++++|-+. T Consensus 69 -l~~~~~~~~~~~glL~--------------r~~G~~~~~--------~~~V~VT~tHGy~~~~apd~~~~vi~~~a~r~ 125 (170) T protein:vir:81 69 -LDVSTLDRSRRKGTLT--------------KPYGRWTAR--------DGAIVVTATHGFTETEAADWRRAVVQLVGRRA 125 (170) T ss_pred -ecCccceeecCCceEE--------------ecCCccccc--------cceEEEEEEeCCCCCccchHHHHHHHHHHHHh Confidence 1122333332 22211 111134332 44578899999999886 88899999877643 Q ss_pred HHHhhhhhhhhhHhhccccccccccCCccchhHHHHHHHHHHHHHhhhhhhhhhc Q lcl|Aclame:pro 260 ILAISANLTAGLRSFGIEGFNASFGNNGLLYENLYNEYKERLRELLSPYYRPVMT 314 (316) Q Consensus 260 ilaisanltaglrsfgiegfnasfgnngllyenlyneykerlrellspyyrpvmt 314 (316) . ..|=...+.|-++.+++.+|+..|..-.. -.+++|++|.---|- T Consensus 126 ~---~s~~~~~l~~~~~~~vs~~~~~~~~s~~~-------~~~~iL~~Yrl~~~p 170 (170) T protein:vir:81 126 Q---TSRPSADLKRKKVDDVEYEWFETAVSVDA-------ELSAVFSPFRILPSP 170 (170) T ss_pred h---ccCCcccceeeeccceeeeecccccccCH-------HHHHhhhhcccCCCC Confidence 2 23444468888999999999877743321 123344444321111 No 2 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=5.67 E-value=12 Score=14.68 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=36.7 Q ss_pred CchhhHHHHHHHHHHHhhcceeccc-cCHHHHHHHHHHHHhHHHHHHHHhhhccchhhhccC Q lcl|Aclame:pro 1 MLTEKVKQDIFQILLDKVEGVLLPE-ITPEVQQYLEREIERSAQYIENRLRTSLTPARFTNL 61 (316) Q Consensus 1 mltekvkqdifqilldkvegvllpe-itpevqqylereiersaqyienrlrtsltparftnl 61 (316) +.|.-+|+--=|+ |-|-.|+-||- ||-.=.+-+|. -+.-.+-++.+|+-.+.|.-+--. T Consensus 251 YaTAL~K~~wGqn-L~K~qG~qLPGGVTlnG~~i~ee-A~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:65 251 MATAFTKEVWGSI-MAKHQGLQLPGGVTVDGIRIIEE-ARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred HHHHHHHHHHHHH-HHHhCCccCCCceeecHHHHHHH-HHHHHHHHHHHHHhhCCCCCeeeC Confidence 7777788776665 56999999994 66554444432 111133456666666677666555 No 3 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=5.67 E-value=12 Score=14.68 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=36.7 Q ss_pred CchhhHHHHHHHHHHHhhcceeccc-cCHHHHHHHHHHHHhHHHHHHHHhhhccchhhhccC Q lcl|Aclame:pro 1 MLTEKVKQDIFQILLDKVEGVLLPE-ITPEVQQYLEREIERSAQYIENRLRTSLTPARFTNL 61 (316) Q Consensus 1 mltekvkqdifqilldkvegvllpe-itpevqqylereiersaqyienrlrtsltparftnl 61 (316) +.|.-+|+--=|+ |-|-.|+-||- ||-.=.+-+|. -+.-.+-++.+|+-.+.|.-+--. T Consensus 251 YaTAL~K~~wGqn-L~K~qG~qLPGGVTlnG~~i~ee-A~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:81 251 MATAFTKEVWGSI-MAKHQGLQLPGGVTVDGIRIIEE-ARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred HHHHHHHHHHHHH-HHHhCCccCCCceeecHHHHHHH-HHHHHHHHHHHHHhhCCCCCeeeC Confidence 7777788776665 56999999994 66554444432 111133456666666677666555 No 4 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=4.29 E-value=8.6 Score=15.44 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=24.1 Q ss_pred CchhhHHHHHHHHHHHhh-----cceeccccCHHHHHHHHHHHHhHHHHHHHHhhhccchhhhccCCCchhhHhhhh Q lcl|Aclame:pro 1 MLTEKVKQDIFQILLDKV-----EGVLLPEITPEVQQYLEREIERSAQYIENRLRTSLTPARFTNLPKTPKEAYENR 72 (316) Q Consensus 1 mltekvkqdifqilldkv-----egvllpeitpevqqylereiersaqyienrlrtsltparftnlpktpkeayenr 72 (316) .+++|.|-||.....+.+ .|++-| .|+.+.|....+.+--.-+... . .|.-=..-|..++|..||+ T Consensus 365 ~~sekEkAei~~~~a~a~~~~~~~g~i~~---~e~r~~L~~~~~~~~~~~~~~~--~-~~~~~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 365 VPSDKDKAEIMAKNVESVVKLKAEQAINL---KETRDTLRSICPDLKIMDNDNI--E-LPEPEDLDPEPGQEGGLNK 435 (435) T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHhccccCCCCcccc--c-CCccccCCCCCCCCCCCCC Confidence 556777766665554432 233221 1333333211111110000000 0 0111112234455667776 No 5 >protein:vir:79544 Length: 70 # NCBI annotation: hypothetical protein # Family: family:all:1547 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272516;genbank:gi:148609385;genbank:GeneID:5204380 Probab=3.71 E-value=16 Score=14.04 Aligned_cols=53 Identities=26% Similarity=0.256 Sum_probs=26.1 Q ss_pred chhhHHHHHHHHHHHhhcceecc--------ccCHHHHHHHHHHHHhHHHHHHHHhhhcc---------chhhh Q lcl|Aclame:pro 2 LTEKVKQDIFQILLDKVEGVLLP--------EITPEVQQYLEREIERSAQYIENRLRTSL---------TPARF 58 (316) Q Consensus 2 ltekvkqdifqilldkvegvllp--------eitpevqqylereiersaqyienrlrtsl---------tparf 58 (316) +|...-|+..|.-++--..|+-- .+|-|- -.||.+--+|.|+||..-- --||| T Consensus 1 mt~e~~~~ml~~yleAE~avl~GkS~ti~gr~lTre~----LseIRkgr~~We~rl~~~~~~r~g~~~~kvarF 70 (70) T protein:vir:79 1 MNQNDIEAMIQRYTEAEMAVLDGKSVTFNGQQMTMEN----LSEIRQGRQEWERRLAALITRRRGHPGYRLARF 70 (70) T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCceeeCCeeecccC----HHHHHHHHHHHHHHHHHHhcccCCCCCcccccC Confidence 45555555555555443333221 122111 1367777788888884322 23666 No 6 >protein:vir:5657 Length: 307 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899596;genbank:gi:34419583;genbank:GeneID:2545698 Probab=2.31 E-value=29 Score=12.55 Aligned_cols=57 Identities=28% Similarity=0.316 Sum_probs=31.5 Q ss_pred CchhhHHHHHHHHHHHhhcceeccc-cCHHHHHHHHHHHHhHHHHHHHHhhhccch--hhhcc Q lcl|Aclame:pro 1 MLTEKVKQDIFQILLDKVEGVLLPE-ITPEVQQYLEREIERSAQYIENRLRTSLTP--ARFTN 60 (316) Q Consensus 1 mltekvkqdifqilldkvegvllpe-itpevqqylereiersaqyienrlrtsltp--arftn 60 (316) +.|.-+|+--=|+ |-|-.|+-||- ||-.=.+-+|. -+.-.+.+|.+|++ +++ --|-- T Consensus 248 YaTALvK~~wGqn-L~K~qG~qLPGGVTlnG~~i~ee-A~~E~e~LreEl~~-~~~P~~~liG 307 (307) T protein:vir:56 248 MATAMTKQMNGVI-LKKHQGLQLPGGITIDGKEIYDE-ATQEIERLREELMS-LTVPLGVFMG 307 (307) T ss_pred HHHHHHHHHHHHH-HHHhCCccCCCceeecHHHHHHH-HHHHHHHHHHHHhh-ccCCchhhcC Confidence 7777788776665 56999999994 56544443331 11112335555665 432 22222 No 7 >protein:vir:195 Length: 115 # NCBI annotation: Gp11 # Family: family:all:896 # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037705;genbank:gi:9634170;genbank:GeneID:1262540 Probab=2.27 E-value=6.1 Score=16.26 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=53.1 Q ss_pred CchhhHHHHHHHHHHHhhcceeccccCHHHH--------HHHH-HHH-HhHHHHHHHHhhhccchhhhccCCCchhhHhh Q lcl|Aclame:pro 1 MLTEKVKQDIFQILLDKVEGVLLPEITPEVQ--------QYLE-REI-ERSAQYIENRLRTSLTPARFTNLPKTPKEAYE 70 (316) Q Consensus 1 mltekvkqdifqilldkvegvllpeitpevq--------qyle-rei-ersaqyienrlrtsltparftnlpktpkeaye 70 (316) |. | +||+..|-.-+.|-+.|...|+-- -|+- ..+ .....+++- --..-..-...---+|++||.+ T Consensus 1 M~-e---~~i~~lL~~l~~gRvyp~~aP~~~~~~~~~~~Pyiv~q~vsg~p~~~L~G-~~~~~~~vQIDvyA~t~~~A~~ 75 (115) T protein:vir:19 1 MN-E---DNIYALLSPLAEGRVYPYVAPLGSDGKPSVSPPWIIFSIVDDVSADVLCG-QAESRVSVQVDVYSTSIAESRS 75 (115) T ss_pred Cc-h---hHHHHHHhhhcCcccceeeccCCCCCCccccCCeEEEEeccCcccccccC-CCccceEEEEEEeeCChHHHHH Confidence 43 3 677777665688988888777621 1110 000 111222221 0000011112234589999999 Q ss_pred hhhhhhhhhhhhhhhcCCcc-hhhhhhhhccCCCCceeeccccchhhhcchhhHHHHhhccccc Q lcl|Aclame:pro 71 NRAKYKDAINENFYQFPKWE-DLTAAQKNLYGNNPSFYVPGSLPFELLTNDQLNQWVSNIRVAP 133 (316) Q Consensus 71 nrakykdainenfyqfpkwe-dltaaqknlygnnpsfyvpgslpfelltndqlnqwvsnirvap 133 (316) -|.+-.+||.-..+ +..|+ +.--++-.||+-.=.|-| .| T Consensus 76 l~~~i~~Al~~~~p-~~~~~~~~ye~dt~lyR~s~d~~V-----------------------~~ 115 (115) T protein:vir:19 76 LRDLVLASLEPLTP-TEVVKIPGYEPDYRLYRATLDFKV-----------------------TP 115 (115) T ss_pred HHHHHHHHhhhcCC-EEecCCCCcccchhceeeEEEEEe-----------------------cC Confidence 99999999964333 34443 333444555554444433 33 No 8 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=2.13 E-value=31 Score=12.35 Aligned_cols=58 Identities=29% Similarity=0.274 Sum_probs=30.9 Q ss_pred CchhhHHHHHHHHHHHhhcceeccc-cCHHHHHHHHHHHHhHHHHHHHHhhhc--cchhhhcc Q lcl|Aclame:pro 1 MLTEKVKQDIFQILLDKVEGVLLPE-ITPEVQQYLEREIERSAQYIENRLRTS--LTPARFTN 60 (316) Q Consensus 1 mltekvkqdifqilldkvegvllpe-itpevqqylereiersaqyienrlrts--ltparftn 60 (316) |.|.-+|+--=|+ |-|-.|+-||- ||..=.+-+|. -..-.+.++.+|.+- +.|--|-. T Consensus 216 YaTAL~K~~wGq~-L~K~qG~qLPGGvTvnG~~i~ee-A~~E~e~L~eel~~~~~~Pp~~miG 276 (276) T protein:vir:10 216 YATALLKRQWGQN-LIKYNSVQLPGGITLNGRQIWED-GNNEVRELESRMMTDYSLPPMDMIG 276 (276) T ss_pred HHHHHHHHHHHHH-HHHhCCccCCCceeeCHHHHHHH-HHHHHHHHHHHHHhhcCCCceeecC Confidence 7788888776665 56999999994 56544443331 111111233344332 33444444 No 9 >protein:vir:107900 Length: 311 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595289;genbank:gi:161622595;genbank:GeneID:5783619 Probab=1.96 E-value=34 Score=12.17 Aligned_cols=58 Identities=19% Similarity=0.155 Sum_probs=30.7 Q ss_pred CchhhHHHHHHHHHHHhhcceeccc-cCHHHHHHHHHHHHhHHHHHHHHhh-hccchhhhcc Q lcl|Aclame:pro 1 MLTEKVKQDIFQILLDKVEGVLLPE-ITPEVQQYLEREIERSAQYIENRLR-TSLTPARFTN 60 (316) Q Consensus 1 mltekvkqdifqilldkvegvllpe-itpevqqylereiersaqyienrlr-tsltparftn 60 (316) +.|.-+|+--=|+ |-|-.|+-||- ||-.=.+-+|.- ..-.+-++.+|. -++.|.-|-. T Consensus 252 YaTALvK~~wGq~-L~K~qG~qLPGGvTlnG~~i~eeA-~~E~e~LreEl~~~~~Pp~~liG 311 (311) T protein:vir:10 252 YATALVKEVNGNI-LAKHQGMQLAGGTTVDGIRLIEEA-RLEKERLREELDLLDPPTPILIG 311 (311) T ss_pred HHHHHHHHHHHHH-HHHhcCccCCCceeecHHHHHHHH-HHHHHHHHHHHhhcCCCchhccC Confidence 7777788776665 56899999994 555444433310 000111222221 3445555555 No 10 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=1.82 E-value=33 Score=12.26 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=17.8 Q ss_pred CchhhHHHHHHHHHHHhh-----cceeccccCHHHHHHHHHHHHhHHHHHHHHhhhccchhhhccCCCchhhHhhhhhhh Q lcl|Aclame:pro 1 MLTEKVKQDIFQILLDKV-----EGVLLPEITPEVQQYLEREIERSAQYIENRLRTSLTPARFTNLPKTPKEAYENRAKY 75 (316) Q Consensus 1 mltekvkqdifqilldkv-----egvllpeitpevqqylereiersaqyienrlrtsltparftnlpktpkeayenraky 75 (316) .+++|.|-||+....+-+ .||+-| .|+++.|....... ..-.+....-...+.-.+-|+.-.+ T Consensus 353 ~~sekekaei~~~~a~a~~~~~~~g~i~~---~e~r~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------- 420 (422) T protein:vir:10 353 QESSKDKAEILEKNVNSIAALIAAGAMDI---DEARDTLRTIAPEV-KINDGSVETEVTISETSNDPLEVPT-------- 420 (422) T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHhhhhcccc-cCCCCCCccccchhhcCCCCCCCCC-------- Confidence 566776666665444432 232221 13333331110000 0000000001111111111111000 Q ss_pred hhhhhhhhhhcCCcch Q lcl|Aclame:pro 76 KDAINENFYQFPKWED 91 (316) Q Consensus 76 kdainenfyqfpkwed 91 (316) +| T Consensus 421 --------------~d 422 (422) T protein:vir:10 421 --------------DD 422 (422) T ss_pred --------------CC Confidence 00 Done!