Query lcl|Aclame:protein:vir:105465|NCBI_annot:hypothetical protein|genbank:acc:YP_529875;genbank:gi:90592615;genbank:GeneID:3974529 Match_columns 69 No_of_seqs 7 out of 11 Neff 2.5 Searched_HMMs 1612 Date Mon Dec 2 07:05:12 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_13 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_13_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:102961 Length: 131 99.6 9.2E-20 5.7E-23 124.9 2.2 68 1-68 60-131 (131) 2 protein:vir:79050 Length: 133 98.6 8.2E-12 5.1E-15 81.4 -0.1 69 1-69 56-133 (133) 3 protein:vir:104344 Length: 132 50.6 0.092 5.7E-05 26.3 2.1 62 1-69 48-116 (132) 4 protein:vir:98900 Length: 132 45.1 0.099 6.1E-05 26.1 1.4 58 1-69 60-131 (132) 5 protein:vir:97329 Length: 104 43.0 0.15 9.4E-05 25.1 2.0 46 1-69 54-99 (104) 6 protein:vir:96281 Length: 104 43.0 0.15 9.4E-05 25.1 2.0 46 1-69 54-99 (104) 7 protein:vir:95891 Length: 104 43.0 0.15 9.4E-05 25.1 2.0 46 1-69 54-99 (104) 8 protein:vir:94798 Length: 104 43.0 0.15 9.5E-05 25.1 2.0 46 1-69 54-99 (104) 9 protein:vir:5976 Length: 102 # 41.9 0.16 0.0001 24.9 2.0 57 1-69 24-102 (102) 10 protein:vir:107756 Length: 147 35.6 0.28 0.00017 23.6 2.2 66 1-69 52-134 (147) 11 protein:vir:80967 Length: 131 30.5 0.32 0.0002 23.3 1.7 66 1-69 61-130 (131) 12 protein:vir:97430 Length: 104 30.2 0.4 0.00025 22.8 2.2 57 1-69 34-99 (104) 13 protein:vir:94492 Length: 104 30.2 0.4 0.00025 22.8 2.2 57 1-69 34-99 (104) 14 protein:vir:1241 Length: 104 # 30.1 0.4 0.00025 22.8 2.2 57 1-69 34-99 (104) 15 protein:vir:95071 Length: 104 30.1 0.4 0.00025 22.8 2.2 57 1-69 34-99 (104) 16 protein:vir:93740 Length: 104 30.1 0.4 0.00025 22.8 2.2 57 1-69 34-99 (104) 17 protein:vir:105327 Length: 104 28.6 0.44 0.00027 22.6 2.1 46 1-69 54-99 (104) 18 protein:vir:107119 Length: 104 28.6 0.44 0.00027 22.6 2.1 46 1-69 54-99 (104) 19 protein:vir:43 Length: 131 # N 26.1 0.46 0.00029 22.4 1.7 63 1-69 61-123 (131) 20 protein:vir:79701 Length: 144 24.9 0.9 0.00056 20.8 3.1 59 1-69 70-143 (144) 21 protein:vir:95774 Length: 115 24.4 0.6 0.00037 21.8 2.0 51 1-69 54-104 (115) 22 protein:vir:96831 Length: 98 # 23.3 0.72 0.00045 21.4 2.3 56 1-69 34-98 (98) 23 protein:vir:106739 Length: 158 22.9 0.81 0.0005 21.1 2.4 69 1-69 55-140 (158) 24 protein:vir:78595 Length: 158 22.9 0.81 0.0005 21.1 2.4 69 1-69 55-140 (158) No 1 >protein:vir:102961 Length: 131 # NCBI annotation: hypothetical protein # Family: family:all:26777 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945287;genbank:gi:39653722;uniprot:Q708M5;genbank:GeneID:2672875 Probab=99.61 E-value=9.2e-20 Score=124.94 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=64.3 Q ss_pred ChhhHHHhhhhhccccc----cccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVP----KDQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLA 68 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~----v~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~ 68 (69) ++.|++++++.+.+.++ +++.+|.|+||+||||||+|+|+++.++.|++++.+.+||+.+||.||||- T Consensus 60 ~~~maiDll~~e~~~~~k~~~i~~~~g~VsSI~eGDTsIsf~s~t~~~qrl~~~~s~l~~Y~~qL~~yRRL~ 131 (131) T protein:vir:10 60 WIDMTNDLLDKVKEQSVLAEKAGADDFSVKSIKMGDTTIEKVSPYEMIQRMKQVPSSLERYKRQLNRFRKLL 131 (131) T ss_pred HHHHHHHHHhhhcccccccccccccccceeeeeecceeeeccCCccHHHHHHHHHHHHhhhHHHHhhhcccC Confidence 89999999999988765 456888999999999999999999999999999999999999999999999 No 2 >protein:vir:79050 Length: 133 # NCBI annotation: hypothetical protein # Family: family:all:6416 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110727;genbank:gi:134287344;genbank:GeneID:4955224 Probab=98.63 E-value=8.2e-12 Score=81.38 Aligned_cols=69 Identities=22% Similarity=0.118 Sum_probs=56.7 Q ss_pred ChhhHHHhhhhhcc---cccccccccc--ccccccCcceeeecChHHHHHHHhcCCC----cchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQW---LVPKDQQVGN--IQSLSEGDTSVSFRSPSDIYSALQAINT----ITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~---l~~v~~~~gn--VqSl~EGDtSVsfks~se~y~~Lq~in~----itdNY~~~LNnFRRl~~ 69 (69) ++.|++...-.+-. .+|.++-|.+ |+||.||||||+|++...-|...|.++. ++.+|.+.||.||||-= T Consensus 56 ~~~mai~~fl~~kk~~~~~~l~~~D~~~~v~sIkeGDTsv~f~~~~~s~t~eq~l~s~i~~L~~~~k~~l~~yRkLrW 133 (133) T protein:vir:79 56 EADMIVGEFLFTKKNMGQLDIESINFEAVEKSISEGDTKVDFAIGSGSQTPEQRFDSLIAYLTAYGKNKILTFRCLRW 133 (133) T ss_pred HHHHHHHHHHhcccccCCCCcccccchhhhhheecccceeecccCCCccchhHHHHHHHHHHhhcccchhhccccccC Confidence 88999986554444 3566777775 9999999999999988877777776665 58899999999999988 No 3 >protein:vir:104344 Length: 132 # NCBI annotation: hypothetical protein # Family: family:all:5122 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398973;genbank:gi:81343957;genbank:GeneID:3778876 Probab=50.60 E-value=0.092 Score=26.27 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=37.5 Q ss_pred ChhhHHHhhhhhccccccccccc------cccccc-cCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPKDQQVG------NIQSLS-EGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v~~~~g------nVqSl~-EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) |-+||.-+....+-. +.++.+ .|.|-+ ||+.||||-+++ +.|+ ++-.-.|-++++-.+|+.- T Consensus 48 laL~taHLm~~dga~--k~en~~~~t~S~rvaS~Sl~Ge~Sisf~~~s----a~~s-~L~~tp~Gkl~~~L~k~~~ 116 (132) T protein:vir:10 48 VGLYALHLMLSDGAF--KGENEGLETYSRRMASYSLSGEFSITYDNQS----AIQG-DLSSSSWGRMYKALLRKKG 116 (132) T ss_pred HHHHHHHHhhccccc--cccccchhhhhhhhhhhcccCceeeeccccc----cccc-ccccCcHHHHHHHHHHhcc Confidence 445555554433333 223322 366666 999999999887 5555 5555667777777777443 No 4 >protein:vir:98900 Length: 132 # NCBI annotation: hypothetical protein # Family: family:all:3882 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164420;genbank:gi:56694910;genbank:GeneID:3197290 Probab=45.10 E-value=0.099 Score=26.09 Aligned_cols=58 Identities=28% Similarity=0.308 Sum_probs=31.5 Q ss_pred ChhhHHHhhhhhccccccccccccccccccCcceeeecCh--------------HHHHHHHhcCCCcchhhHHHhhhhhc Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPKDQQVGNIQSLSEGDTSVSFRSP--------------SDIYSALQAINTITDNYVLLLNNFRR 66 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v~~~~gnVqSl~EGDtSVsfks~--------------se~y~~Lq~in~itdNY~~~LNnFRR 66 (69) .+...++.|+..|-.+ -+...+.|+|.+-|.+||+|.+. .++|+-|..-- +| ||= T Consensus 60 A~c~qiey~~~~G~~s-ae~~~~~~~S~svG~~Svs~~s~~~~~~~~~~~~~~~~~a~~~L~~tG--------LL--yrG 128 (132) T protein:vir:98 60 ALCAQIEYFDALGATT-FEEINNSPQTFQAGRTSVSNASRYNPSGANESKPLVAEDVYIYLQGTG--------LL--FQG 128 (132) T ss_pred HHHHHHHHHHhccchh-hhhccCccceeeeCcEEEEeeccCCcccccccccchHHHHHHHHhhcC--------Cc--ccc Confidence 3333344555555552 23345589999999999999752 23444443221 11 333 Q ss_pred cCC Q lcl|Aclame:pro 67 LAQ 69 (69) Q Consensus 67 l~~ 69 (69) .+. T Consensus 129 V~~ 131 (132) T protein:vir:98 129 VKT 131 (132) T ss_pred CCC Confidence 333 No 5 >protein:vir:97329 Length: 104 # NCBI annotation: ORF048 # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240613;genbank:gi:66396311;genbank:GeneID:5133685 Probab=43.04 E-value=0.15 Score=25.07 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=34.1 Q ss_pred ChhhHHHhhhhhccccccccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPKDQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) -|+.|++- +.-+||+|=+=||.|.||.+ |+.+++ .+-|+-||||.- T Consensus 54 fvA~~iky-----------~~~~NissRSMGtVSYty~t--~iP~~i----------~~~LkPYRklr~ 99 (104) T protein:vir:97 54 FIAECIKF-----------GTTGNISARTMGTVSYTYVT--DIPSSA----------YAYLMPYRKLSW 99 (104) T ss_pred HHHHHHhh-----------CCCCCcccccccceeecccc--hhHHHH----------HHhhhhhhhhcc Confidence 44555442 22349999999999999998 566555 467999999998 No 6 >protein:vir:96281 Length: 104 # NCBI annotation: ORF047 # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240313;genbank:gi:66396008;genbank:GeneID:5133358 Probab=43.02 E-value=0.15 Score=25.08 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=34.1 Q ss_pred ChhhHHHhhhhhccccccccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPKDQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) -|+.|++- +.-+||+|=+=||.|.||.+ |+.+++ .+-|+-||||.- T Consensus 54 fvA~~iky-----------~~~~NissRSMGtVSYTy~t--~iP~~i----------~~~LkPYRklr~ 99 (104) T protein:vir:96 54 FIAECIKF-----------GTTGNISARTMGTVSYTYVT--DIPSSA----------YAYLLPYRKLSW 99 (104) T ss_pred HHHHHHhh-----------CCCCCcccccccceeecccc--hhHHHH----------HHhhhhhhhhcc Confidence 44555442 22349999999999999998 566555 467999999998 No 7 >protein:vir:95891 Length: 104 # NCBI annotation: ORF051 # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240387;genbank:gi:66396087;genbank:GeneID:5133402 Probab=43.02 E-value=0.15 Score=25.08 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=34.1 Q ss_pred ChhhHHHhhhhhccccccccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPKDQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) -|+.|++- +.-+||+|=+=||.|.||.+ |+.+++ .+-|+-||||.- T Consensus 54 fvA~~iky-----------~~~~NissRSMGtVSYTy~t--~iP~~i----------~~~LkPYRklr~ 99 (104) T protein:vir:95 54 FIAECIKF-----------GTTGNISARTMGTVSYTYVT--DIPSSA----------YAYLLPYRKLSW 99 (104) T ss_pred HHHHHHhh-----------CCCCCcccccccceeecccc--hhHHHH----------HHhhhhhhhhcc Confidence 44555442 22349999999999999998 566555 467999999998 No 8 >protein:vir:94798 Length: 104 # NCBI annotation: ORF043 # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240538;genbank:gi:66396233;genbank:GeneID:5133578 Probab=42.98 E-value=0.15 Score=25.05 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=34.1 Q ss_pred ChhhHHHhhhhhccccccccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPKDQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) -|+.|++- +.-+||+|=+=||.|.||.+ |+.+++ .+-|+-||||.- T Consensus 54 fvA~~iky-----------~~~~NissRSMGtVSYTy~T--~iP~~i----------~~~LkPYRklr~ 99 (104) T protein:vir:94 54 FIAECIKF-----------GTTGNISARTMGTVSYTYIT--DIPSSA----------YAYLMPYRKLSW 99 (104) T ss_pred HHHHHHhh-----------CCCCCcccccccceeecccc--hhHHHH----------HHhhhhhhhhcc Confidence 44555442 22349999999999999998 566555 467999999998 No 9 >protein:vir:5976 Length: 102 # NCBI annotation: hypothetical protein # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690676;genbank:geneid:6329129;genbank:gi:22855070;uniprot:Q38584;genbank:GeneID:955305 Probab=41.88 E-value=0.16 Score=24.89 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=31.8 Q ss_pred Chh--------hHHHhhhhhc----ccccc----------ccccccccccccCcceeeecChHHHHHHHhcCCCcchhhH Q lcl|Aclame:pro 1 MLG--------LAVQTIDTHQ----WLVPK----------DQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYV 58 (69) Q Consensus 1 vV~--------m~~~~i~~~~----~l~~v----------~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~ 58 (69) ||- .|-|..+-.+ +-.+| -+.-+||+|=+=||.|.||-+ | |-+.-. T Consensus 24 lip~y~e~aedyCN~~F~dkdg~~~lP~gVkkfvAe~ik~y~~~~nissRsMgtVSYty~T--~----------iP~~i~ 91 (102) T protein:vir:59 24 MVPLLVEFAKDECHNPFIDKDGNESIPSGVLIFVAKAAQFYMTNAGLTGRSMDTVSYNFAT--E----------IPSTIL 91 (102) T ss_pred HHHHHHHHHHHHhCCccccccccccCCccHHHHHHHHHHhcCCCCCcccccccceeeechh--h----------hhHHHH Confidence 111 1111111100 00110 122259999999999999998 2 223335 Q ss_pred HHhhhhhccCC Q lcl|Aclame:pro 59 LLLNNFRRLAQ 69 (69) Q Consensus 59 ~~LNnFRRl~~ 69 (69) +-|+-||||+. T Consensus 92 ~~L~PyRrl~~ 102 (102) T protein:vir:59 92 KKLNPYRKMAR 102 (102) T ss_pred HHhhHHHhhcC Confidence 67999999999 No 10 >protein:vir:107756 Length: 147 # NCBI annotation: gp21 # Family: family:all:664 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024869;genbank:gi:48697511;genbank:GeneID:2948377 Probab=35.63 E-value=0.28 Score=23.65 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=35.2 Q ss_pred ChhhHHHhhhhh-----ccccccccccccccccccCcceeeecCh-----HHHHHHHhcCCCcchhhHHHhhhhhc---- Q lcl|Aclame:pro 1 MLGLAVQTIDTH-----QWLVPKDQQVGNIQSLSEGDTSVSFRSP-----SDIYSALQAINTITDNYVLLLNNFRR---- 66 (69) Q Consensus 1 vV~m~~~~i~~~-----~~l~~v~~~~gnVqSl~EGDtSVsfks~-----se~y~~Lq~in~itdNY~~~LNnFRR---- 66 (69) .-.+++.++.-| +-...-+...|-|.|-+||+.||||-.+ .+.+ -+.-+-=-.|..+++-||- T Consensus 52 ~~~~~l~Ll~AHll~l~~~~~~g~g~~G~v~Sas~G~VSVSy~~~~~~~~~~~w---~~~T~YGq~y~~l~~~~~~Gg~v 128 (147) T protein:vir:10 52 TLDLALMQLTAHLMKSATILSSNKGAPMVMTSATIDKVSISTLAPPIKNGWQYW---LSTTPYGQMLWALLSMRSSGGFV 128 (147) T ss_pred hHHHHHHHHHHHHHHHHHhhccCCCcccceeeeeecceeeeeecCCCCCcchhh---hhcCHHHHHHHHHHHhhCcccee Confidence 223333333333 3333445566799999999999999633 2222 1222333456666666652 Q ss_pred ---cCC Q lcl|Aclame:pro 67 ---LAQ 69 (69) Q Consensus 67 ---l~~ 69 (69) +|| T Consensus 129 vgG~p~ 134 (147) T protein:vir:10 129 YGGSPE 134 (147) T ss_pred cCCCCc Confidence 223 No 11 >protein:vir:80967 Length: 131 # NCBI annotation: gp8 # Family: family:all:3882 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468394;genbank:gi:157324968;genbank:GeneID:5601402 Probab=30.46 E-value=0.32 Score=23.26 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=32.3 Q ss_pred ChhhHHHhhhhhccccccccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhh----hhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPKDQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNN----FRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNn----FRRl~~ 69 (69) .+...++.|...+-. .+...+.++|.+-|.+||||.+.++.-.+..+.+.-.+=| +.|.. ||=..= T Consensus 61 A~c~q~e~~~~~g~~--~~~~~~~~~S~svG~~Svs~~~~~~~~~~~~~~~~~~~a~-~~L~~TGLlyrGV~~ 130 (131) T protein:vir:80 61 ATCNQIEYFKEAGGT--SELAVSKPDNVSIGRTSISDSNFASTATSLNSGLVGSDVR-SYLAHTGLLYNGVGV 130 (131) T ss_pred HHHHHHHHHHHhhhh--hhhcccccCeeeeCceEEeeccccchhhhhhhhhhHHHHH-HHHhccCCeecCCCC Confidence 233334445555533 2333458999999999999998776544444333211111 11111 010000 No 12 >protein:vir:97430 Length: 104 # NCBI annotation: ORF051 # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240751;genbank:gi:66396455;genbank:GeneID:5133786 Probab=30.18 E-value=0.4 Score=22.78 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=31.3 Q ss_pred ChhhHHHhhhhhcccccc---------ccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPK---------DQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v---------~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) .=..|-|..+-..+-.+| -+.-+||+|=+=||.|.||-+ | |-+.-.+-|+-||||.- T Consensus 34 aedyCN~~F~~~~lP~gVkkfvAe~iky~~~~NissRsMgtVSYTy~T--~----------iP~~i~~~L~PYRrlrw 99 (104) T protein:vir:97 34 AEDYCNQKFDDKEVPSGVKKFIAECIKFGTTGNISARTMGTVSYTYVT--D----------IPSSAYAYLLPYRKLSW 99 (104) T ss_pred HHHHhCCCCCCccCCccHHHHHHHHHhhCCCCCcccccccceeeechh--h----------hhHHHHHhhhhhhhhcc Confidence 001111111111111110 022349999999999999998 2 22333567899999998 No 13 >protein:vir:94492 Length: 104 # NCBI annotation: ORF049 # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240678;genbank:gi:66396380;genbank:GeneID:5133756 Probab=30.18 E-value=0.4 Score=22.78 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=31.3 Q ss_pred ChhhHHHhhhhhcccccc---------ccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPK---------DQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v---------~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) .=..|-|..+-..+-.+| -+.-+||+|=+=||.|.||-+ | |-+.-.+-|+-||||.- T Consensus 34 aedyCN~~F~~~~lP~gVkkfvAe~iky~~~~NissRsMgtVSYTy~T--~----------iP~~i~~~L~PYRrlrw 99 (104) T protein:vir:94 34 AEDYCNQKFDDKEVPSGVKKFIAECIKFGTTGNISARTMGTVSYTYVT--D----------IPSSAYAYLLPYRKLSW 99 (104) T ss_pred HHHHhCCCCCCccCCccHHHHHHHHHhhCCCCCcccccccceeeechh--h----------hhHHHHHhhhhhhhhcc Confidence 001111111111111110 022349999999999999998 2 22333567899999998 No 14 >protein:vir:1241 Length: 104 # NCBI annotation: similar to phage Spp1 gp15 (product required for head morphogenesis) # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510940;genbank:gi:17426274;genbank:GeneID:927373 Probab=30.13 E-value=0.4 Score=22.77 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=31.3 Q ss_pred ChhhHHHhhhhhcccccc---------ccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPK---------DQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v---------~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) .=..|-|..+-..+-.+| -+.-+||+|=+=||.|.||-+ | |-+.-.+-|+-||||.- T Consensus 34 aedyCN~~F~~~~lP~gVkkfvAe~iky~~~~NissRsMgtVSYTy~T--~----------iP~~i~~~L~PYRrlrw 99 (104) T protein:vir:12 34 AEDYCNQKFDDKEVPSGVKKFIAECIKFGTTGNISARTMGTVSYTYVT--D----------IPSSAYAYLLPYRKLSW 99 (104) T ss_pred HHHHhCCCCCCccCCccHHHHHHHHHhhCCCCCcccccccceeeechh--h----------hhHHHHHhhhhhhhhcc Confidence 001111111111111110 022349999999999999998 2 22333567899999998 No 15 >protein:vir:95071 Length: 104 # NCBI annotation: ORF050 # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240825;genbank:gi:66394717;genbank:GeneID:5133865 Probab=30.13 E-value=0.4 Score=22.77 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=31.3 Q ss_pred ChhhHHHhhhhhcccccc---------ccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPK---------DQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v---------~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) .=..|-|..+-..+-.+| -+.-+||+|=+=||.|.||-+ | |-+.-.+-|+-||||.- T Consensus 34 aedyCN~~F~~~~lP~gVkkfvAe~iky~~~~NissRsMgtVSYTy~T--~----------iP~~i~~~L~PYRrlrw 99 (104) T protein:vir:95 34 AEDYCNQKFDDKEVPSGVKKFIAECIKFGTTGNISARTMGTVSYTYVT--D----------IPSSAYAYLMPYRKLSW 99 (104) T ss_pred HHHHhCCCCCCccCCccHHHHHHHHHhhCCCCCcccccccceeeechh--h----------hhHHHHHhhhhhhhhcc Confidence 001111111111111110 022349999999999999998 2 22333567899999998 No 16 >protein:vir:93740 Length: 104 # NCBI annotation: ORF047 # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240461;genbank:gi:66396159;genbank:GeneID:5133509 Probab=30.12 E-value=0.4 Score=22.77 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=31.3 Q ss_pred ChhhHHHhhhhhcccccc---------ccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPK---------DQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v---------~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) .=..|-|..+-..+-.+| -+.-+||+|=+=||.|.||-+ | |-+.-.+-|+-||||.- T Consensus 34 aedyCN~~F~~~~lP~gVkkfvAe~iky~~~~NissRsMgtVSYTy~T--~----------iP~~i~~~L~PYRrlrw 99 (104) T protein:vir:93 34 AEDYCNQKFDDKEVPSGVKKFIAECIKFGTTGNISARTMGTVSYTYVT--D----------IPSSAYAYLLPYRKLSW 99 (104) T ss_pred HHHHhCCCCCCccCCccHHHHHHHHHhhCCCCCcccccccceeeechh--h----------hhHHHHHhhhhhhhhcc Confidence 001111111111111110 022349999999999999998 2 22333567899999998 No 17 >protein:vir:105327 Length: 104 # NCBI annotation: putative head morphogenesis protein # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950671;genbank:gi:119967841;genbank:GeneID:4643206 Probab=28.55 E-value=0.44 Score=22.56 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=33.6 Q ss_pred ChhhHHHhhhhhccccccccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPKDQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) -|+.|++- +--+||+|=+=||.|.||.+ |+.+++ .+-|+-||||.= T Consensus 54 fvA~~iky-----------~~~~NissRSMGtVSyTy~t--~iP~~i----------~~~L~PYRklr~ 99 (104) T protein:vir:10 54 FIANCIKQ-----------GTTSNISSRTMGTVSYTFVT--DLPKET----------YGYLKPFRRLRW 99 (104) T ss_pred HHHHHHhh-----------cCCCCcccccccceeecccc--hhHHHH----------HHhhhhhhhhcc Confidence 44444442 11239999999999999998 566555 467999999987 No 18 >protein:vir:107119 Length: 104 # NCBI annotation: conserved phage protein # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950608;genbank:gi:119953688;genbank:GeneID:4643128 Probab=28.55 E-value=0.44 Score=22.56 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=33.6 Q ss_pred ChhhHHHhhhhhccccccccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPKDQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) -|+.|++- +--+||+|=+=||.|.||.+ |+.+++ .+-|+-||||.= T Consensus 54 fvA~~iky-----------~~~~NissRSMGtVSyTy~t--~iP~~i----------~~~L~PYRklr~ 99 (104) T protein:vir:10 54 FIANCIKQ-----------GTTSNISSRTMGTVSYTFVT--DLPKET----------YGYLKPFRRLRW 99 (104) T ss_pred HHHHHHhh-----------cCCCCcccccccceeecccc--hhHHHH----------HHhhhhhhhhcc Confidence 44444442 11239999999999999998 566555 467999999987 No 19 >protein:vir:43 Length: 131 # NCBI annotation: gp8 # Family: family:all:3882 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463469;swissprot:trembl:q9t1b5;genbank:gi:16798791;uniprot:Q9T1B5;genbank:GeneID:922374 Probab=26.14 E-value=0.46 Score=22.43 Aligned_cols=63 Identities=11% Similarity=-0.031 Sum_probs=30.5 Q ss_pred ChhhHHHhhhhhccccccccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPKDQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) .+...++.|...+-. .++..+.++|.+-|.+||||.+.++.-...++.+. +....+=.++-.= T Consensus 61 A~c~q~e~~~~~g~~--s~~~~~~~~S~svG~~Svs~~~~~~~~~~~~~~~~----~~~a~~~L~~TGL 123 (131) T protein:vir:43 61 ATCNQIEYFKEAGGT--SELAVSKPDNVSIGRTSISDSNFASTATSLNSGLI----GSDVRSYLAHTGL 123 (131) T ss_pred HHHHHHHHHHHhHHH--hhhhccccCeeecCceEEeecccccchhhhchhhh----HHHHHHHHhccCC Confidence 233334445544433 12334489999999999999986654433333221 1111111111110 No 20 >protein:vir:79701 Length: 144 # NCBI annotation: hypothetical protein # Family: family:all:1399 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285884;genbank:gi:148750841;genbank:GeneID:5220403 Probab=24.89 E-value=0.9 Score=20.82 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=34.7 Q ss_pred ChhhHHHh--hhhhccccccccccccccccccCcceeeecCh-------------HHHHHHHhcCCCcchhhHHHhhhhh Q lcl|Aclame:pro 1 MLGLAVQT--IDTHQWLVPKDQQVGNIQSLSEGDTSVSFRSP-------------SDIYSALQAINTITDNYVLLLNNFR 65 (69) Q Consensus 1 vV~m~~~~--i~~~~~l~~v~~~~gnVqSl~EGDtSVsfks~-------------se~y~~Lq~in~itdNY~~~LNnFR 65 (69) -.+||-|. ++..|.++.-+-..+.++|++.|-||||..+- .+||.-|...-+. || T Consensus 70 KkA~a~QIeY~~~~G~~sa~e~~~~~~~S~svGrtsvs~~~~~~~s~t~~~~~v~~~a~~yL~~tGLL----------Yr 139 (144) T protein:vir:79 70 KKAVALEMLFLEDSGYSSAYDVAQGALNSFTVGHTSMSLNPSAGQNLTVGSTGVVKSAYDLLGRYGLL----------FS 139 (144) T ss_pred HHHHHHHHHHHHHcCCcchhhhhcCccceeEecceEEeecCCCccccccccccccHHHHHHHhhcCcc----------cc Confidence 34455554 57777776555556699999999999997443 3455555422211 22 Q ss_pred ccCC Q lcl|Aclame:pro 66 RLAQ 69 (69) Q Consensus 66 Rl~~ 69 (69) =.|- T Consensus 140 GV~s 143 (144) T protein:vir:79 140 GVAS 143 (144) T ss_pred cccc Confidence 2222 No 21 >protein:vir:95774 Length: 115 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950592;genbank:gi:119953787;genbank:GeneID:5076844 Probab=24.38 E-value=0.6 Score=21.82 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=32.3 Q ss_pred ChhhHHHhhhhhccccccccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPKDQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) ++.+|+..-+-- ... -++|-+||..|+||.+..+.+ +-|...|+.|++... T Consensus 54 v~ev~vkryNR~-------g~E-G~~S~S~eG~S~tf~~nD~~f----------~eY~~~l~~~~~~~~ 104 (115) T protein:vir:95 54 IEAVVYKLYGRK-------GSE-GVTSETVDGYSVTYQEWDNLF----------KPYMAILNKDFGLDG 104 (115) T ss_pred HHHHHHHHhcCC-------Ccc-ccceeecCceeeecccccccc----------chhHHHHHHHHhccC Confidence 666666655431 111 489999999999997543222 237777777766443 No 22 >protein:vir:96831 Length: 98 # NCBI annotation: ORF052 # Family: family:all:789 # ACLAME annotation(s): phi:0000067 - phage portal associated protein # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240159;genbank:gi:66395852;genbank:GeneID:5133172 Probab=23.34 E-value=0.72 Score=21.36 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=31.7 Q ss_pred ChhhHHHhhhhhcccccc---------ccccccccccccCcceeeecChHHHHHHHhcCCCcchhhHHHhhhhhccCC Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVPK---------DQQVGNIQSLSEGDTSVSFRSPSDIYSALQAINTITDNYVLLLNNFRRLAQ 69 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~v---------~~~~gnVqSl~EGDtSVsfks~se~y~~Lq~in~itdNY~~~LNnFRRl~~ 69 (69) .=..|-|..+. .+-.+| -+..+||+|=+=||.|.||-+ | |-+.-.+-|+-||||.- T Consensus 34 aedyCN~~F~~-~lP~gVkkfvAe~iky~~~~nissRsMgtVSYty~T--~----------iP~~i~~~L~PyRrlrw 98 (98) T protein:vir:96 34 AEEYCNQVFGD-PLPGGVKKFIAECIKYGVSGNIASRSMGTVSYTYVT--D----------VPSSMYKYLKPYRKLRW 98 (98) T ss_pred HHHHhCCcccc-cCCccHHHHHHHHHhhcccCCcccccccceeeechh--h----------hhHHHHHHhhhhhhccC Confidence 01111111110 011111 033359999999999999988 2 22333567899999988 No 23 >protein:vir:106739 Length: 158 # NCBI annotation: gp08 # Family: family:all:664 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944316;genbank:gi:38638615;genbank:GeneID:2657368 Probab=22.88 E-value=0.81 Score=21.09 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=34.3 Q ss_pred ChhhHHHhhhhhccccc-------cccccccccccccCcceeeecChH---HHHHHHhcCCCcchhhHHHhhhhhc---- Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVP-------KDQQVGNIQSLSEGDTSVSFRSPS---DIYSALQAINTITDNYVLLLNNFRR---- 66 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~-------v~~~~gnVqSl~EGDtSVsfks~s---e~y~~Lq~in~itdNY~~~LNnFRR---- 66 (69) .-.++..++.-|=+... .+...|.|.|-+||+.||||.... +.-+.--+.=+.=--|..++.-||- T Consensus 55 ~r~~ll~LltAHll~L~~~~~~~a~~g~~G~isSas~G~VSVS~d~~~~t~~~~~~W~~~T~YG~~fwal~~~~~~Ggy~ 134 (158) T protein:vir:10 55 VLRELFNMLVAHLLTLFGATPTSANSRPPGRLSSAAEGTVSSSFEFKLPEGSAIAPWYNQTQYGAMFWMATARYRSARYM 134 (158) T ss_pred HHHHHHHHHHHHHHHHhHhhhccccCCcccceeeeeecceEEEEeecCccccchhHHhhcCHHHHHHHHHHHHhcccccc Confidence 22334445555543331 223355999999999999995322 1112212222333345555555542 Q ss_pred ---cCC Q lcl|Aclame:pro 67 ---LAQ 69 (69) Q Consensus 67 ---l~~ 69 (69) +|| T Consensus 135 ~gg~pe 140 (158) T protein:vir:10 135 VSGGSG 140 (158) T ss_pred cccCCc Confidence 223 No 24 >protein:vir:78595 Length: 158 # NCBI annotation: BcepNY3gp07 # Family: family:all:664 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294844;genbank:gi:149882907;genbank:GeneID:5291066 Probab=22.88 E-value=0.81 Score=21.09 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=34.3 Q ss_pred ChhhHHHhhhhhccccc-------cccccccccccccCcceeeecChH---HHHHHHhcCCCcchhhHHHhhhhhc---- Q lcl|Aclame:pro 1 MLGLAVQTIDTHQWLVP-------KDQQVGNIQSLSEGDTSVSFRSPS---DIYSALQAINTITDNYVLLLNNFRR---- 66 (69) Q Consensus 1 vV~m~~~~i~~~~~l~~-------v~~~~gnVqSl~EGDtSVsfks~s---e~y~~Lq~in~itdNY~~~LNnFRR---- 66 (69) .-.++..++.-|=+... .+...|.|.|-+||+.||||.... +.-+.--+.=+.=--|..++.-||- T Consensus 55 ~r~~ll~LltAHll~L~~~~~~~a~~g~~G~isSas~G~VSVS~d~~~~t~~~~~~W~~~T~YG~~fwal~~~~~~Ggy~ 134 (158) T protein:vir:78 55 VLRELFNMLVAHLLTLFGATPTSANSRPPGRLSSAAEGTVSSSFEFKLPEGSAIAPWYNQTQYGAMFWMATARYRSARYM 134 (158) T ss_pred HHHHHHHHHHHHHHHHhHhhhccccCCcccceeeeeecceEEEEeecCccccchhHHhhcCHHHHHHHHHHHHhcccccc Confidence 22334445555543331 223355999999999999995322 1112212222333345555555542 Q ss_pred ---cCC Q lcl|Aclame:pro 67 ---LAQ 69 (69) Q Consensus 67 ---l~~ 69 (69) +|| T Consensus 135 ~gg~pe 140 (158) T protein:vir:78 135 VSGGSG 140 (158) T ss_pred cccCCc Confidence 223 Done!