BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:105471|NCBI_annot:putative phage core tail protein|genbank:acc:YP_529881;genbank:gi:90592621;genbank:GeneID: 3974535 (156 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|2942|lcl|protein:vir:105471 Length: 156 # NCBI annotation: pu... 318 2e-89 gi|11748|lcl|protein:vir:79038 Length: 156 # NCBI annotation: pu... 94 5e-22 gi|1180|lcl|protein:vir:102914 Length: 154 # NCBI annotation: co... 93 2e-21 gi|5646|lcl|protein:vir:102360 Length: 143 # NCBI annotation: Xk... 51 8e-09 gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 25 0.64 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 23 1.9 gi|15780|lcl|protein:vir:6245 Length: 327 # NCBI annotation: gp3... 21 6.3 >gi|2942|lcl|protein:vir:105471 Length: 156 # NCBI annotation: putative phage core tail protein # Family: family:all:668 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529881;genbank:gi:90592621;genbank:GeneID :3974535 Length = 156 Score = 318 bits (816), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 156/156 (100%), Positives = 156/156 (100%) Query: 1 MAAIDEFLNGRDTISTKDATLTIKVNGNIIKMIECDKFTAKLEKNKEDVQTLGSHWKRKK 60 MAAIDEFLNGRDTISTKDATLTIKVNGNIIKMIECDKFTAKLEKNKEDVQTLGSHWKRKK Sbjct: 1 MAAIDEFLNGRDTISTKDATLTIKVNGNIIKMIECDKFTAKLEKNKEDVQTLGSHWKRKK 60 Query: 61 TTSVEGTGTLGGYLISSNWLKYGIPYTQDGKDLYFDATLTIQDPTSRAGKQVVQLTDVNL 120 TTSVEGTGTLGGYLISSNWLKYGIPYTQDGKDLYFDATLTIQDPTSRAGKQVVQLTDVNL Sbjct: 61 TTSVEGTGTLGGYLISSNWLKYGIPYTQDGKDLYFDATLTIQDPTSRAGKQVVQLTDVNL 120 Query: 121 DDIPIADFEADDGVMEWESDFTFEGVNLVQAFDGIN 156 DDIPIADFEADDGVMEWESDFTFEGVNLVQAFDGIN Sbjct: 121 DDIPIADFEADDGVMEWESDFTFEGVNLVQAFDGIN 156 >gi|11748|lcl|protein:vir:79038 Length: 156 # NCBI annotation: putative core tail # Family: family:all:668 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110732;genbank:gi:134287349;genbank:Ge neID:4955212 Length = 156 Score = 94.4 bits (233), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 81/149 (54%) Query: 8 LNGRDTISTKDATLTIKVNGNIIKMIECDKFTAKLEKNKEDVQTLGSHWKRKKTTSVEGT 67 + RDTIS A + + G ++ AK+EKNK ++ LGS K K+T + + Sbjct: 5 IKARDTISASKAECFVTIKGKRYNFMQAINLEAKMEKNKSEIPILGSTTKGNKSTGSKYS 64 Query: 68 GTLGGYLISSNWLKYGIPYTQDGKDLYFDATLTIQDPTSRAGKQVVQLTDVNLDDIPIAD 127 G Y +S + + Y + G+D+YFD +T +DPTS G+Q + L D N+D IA Sbjct: 65 GNATFYYNTSIFRELLYEYKETGEDIYFDIQITNEDPTSSVGRQTIILEDCNMDSGIIAK 124 Query: 128 FEADDGVMEWESDFTFEGVNLVQAFDGIN 156 F+AD ++ + DFTFE LV+ F+ N Sbjct: 125 FDADGEYLDEDMDFTFENWKLVEKFNIAN 153 >gi|1180|lcl|protein:vir:102914 Length: 154 # NCBI annotation: core tail protein # Family: family:all:668 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945293;genbank:gi:39653728;hssp:P54332;un iprot:Q708L9;genbank:GeneID:2672828 Length = 154 Score = 92.8 bits (229), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 85/148 (57%) Query: 7 FLNGRDTISTKDATLTIKVNGNIIKMIECDKFTAKLEKNKEDVQTLGSHWKRKKTTSVEG 66 FL GRD IS ++ T I ++G M + A ++KNKE+V+TL + K T +G Sbjct: 3 FLKGRDVISGQEGTAFIHIDGKNEFMFYIKELEATVKKNKEEVRTLNKRGTQVKATGFKG 62 Query: 67 TGTLGGYLISSNWLKYGIPYTQDGKDLYFDATLTIQDPTSRAGKQVVQLTDVNLDDIPIA 126 G + Y ++S + + + Y ++G+D +FD +T D TS G+Q L + NLD++ + Sbjct: 63 EGKMTIYGVTSTFKEMMLDYMKNGRDTFFDIQVTNDDATSSIGRQTTILRECNLDEVVMG 122 Query: 127 DFEADDGVMEWESDFTFEGVNLVQAFDG 154 + ++ +E E +FTFE V++++ F+ Sbjct: 123 QLKVEEDFLEEEVNFTFEDVDILEKFNA 150 >gi|5646|lcl|protein:vir:102360 Length: 143 # NCBI annotation: XkdM protein # Family: family:all:668 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529566;genbank:gi:90592651;genbank:GeneID :3974492 Length = 143 Score = 50.8 bits (120), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 4/125 (3%) Query: 28 NIIKMIECDKFTAKLEKNKEDVQTLGSHWKRKKTTSVEGTGTLGGYLISSNWLKYGIPYT 87 N +++ EC A+++ +K ++ K +K G++ Y + SN LKY Sbjct: 21 NEVQIAECKALKAEIKLDKAEIVRPRKMIKGQKVIGASAEGSITLYHVDSNMLKYITQII 80 Query: 88 QDGKDLYFDATLTIQDPTSRAGKQVVQLTDVNLDDIPIADFE-ADDGVMEWESDFTFEGV 146 ++G++ F + DP ++ G + + LT V+ D + I D+E +G E E+ FTFE Sbjct: 81 KEGREPKFTIISKLADPDAK-GVERISLTGVSFDGLSIIDWENGKEG--EIEASFTFEDF 137 Query: 147 NLVQA 151 ++ A Sbjct: 138 EILDA 142 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 24.6 bits (52), Expect = 0.64, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 14 ISTKDATLTIKVNGNIIKMIECDK 37 IST TLT +V+G ++K+I D+ Sbjct: 150 ISTHTRTLTNRVSGAVLKVIAADE 173 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 23.1 bits (48), Expect = 1.9, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 17/26 (65%) Query: 14 ISTKDATLTIKVNGNIIKMIECDKFT 39 IS TLT +V+G ++K++ D+ T Sbjct: 158 ISAHTKTLTNRVSGAVLKIVAADENT 183 >gi|15780|lcl|protein:vir:6245 Length: 327 # NCBI annotation: gp39 # Family: family:all:11659 # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813699;swissprot:trembl:q859b8;genbank:gi :29366759;uniprot:Q859B8;genbank:GeneID:1258900 Length = 327 Score = 21.2 bits (43), Expect = 6.3, Method: Compositional matrix adjust. Identities = 8/21 (38%), Positives = 13/21 (61%) Query: 78 NWLKYGIPYTQDGKDLYFDAT 98 +W + GI ++ G + FDAT Sbjct: 180 DWTRTGIELSRAGSVVAFDAT 200 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.315 0.134 0.392 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,250 Number of Sequences: 514 Number of extensions: 3439 Number of successful extensions: 7 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7 length of query: 156 length of database: 206,069 effective HSP length: 65 effective length of query: 91 effective length of database: 172,659 effective search space: 15711969 effective search space used: 15711969 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 33 (17.3 bits)