BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:100800|NCBI_annot:hypothetical protein|genbank:acc:YP_164737;genbank:gi:56693150;genbank:GeneID:31974 33 (155 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|24314|lcl|protein:vir:100800 Length: 155 # NCBI annotation: h... 314 3e-88 gi|24940|lcl|protein:vir:80620 Length: 140 # NCBI annotation: gp... 178 2e-47 gi|25129|lcl|protein:vir:80710 Length: 140 # NCBI annotation: st... 166 2e-43 gi|9414|lcl|protein:vir:99300 Length: 142 # NCBI annotation: hyp... 163 1e-42 gi|22597|lcl|protein:vir:95739 Length: 142 # NCBI annotation: OR... 163 1e-42 gi|21558|lcl|protein:vir:63764 Length: 123 # NCBI annotation: gp... 156 1e-40 gi|23709|lcl|protein:vir:96672 Length: 121 # NCBI annotation: OR... 136 1e-34 gi|15695|lcl|protein:vir:1173 Length: 171 # NCBI annotation: hyp... 23 1.6 gi|19603|lcl|protein:vir:4076 Length: 205 # NCBI annotation: maj... 21 9.4 >gi|24314|lcl|protein:vir:100800 Length: 155 # NCBI annotation: hypothetical protein # Family: family:all:2792 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164737;genbank:gi:56693150;genbank:GeneID :3197433 Length = 155 Score = 314 bits (805), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 155/155 (100%), Positives = 155/155 (100%) Query: 1 MATVKNQTVETGNRIYIMVKSAVLGRAQSLTGDRSFGTTGVYELGTIMPREHVFLKYTGT 60 MATVKNQTVETGNRIYIMVKSAVLGRAQSLTGDRSFGTTGVYELGTIMPREHVFLKYTGT Sbjct: 1 MATVKNQTVETGNRIYIMVKSAVLGRAQSLTGDRSFGTTGVYELGTIMPREHVFLKYTGT 60 Query: 61 VSVERYRMTTNNFTNTKVAALGEDVLKIDVLDIAVKDNTTGKLIIVYRGCSIDDYQETYR 120 VSVERYRMTTNNFTNTKVAALGEDVLKIDVLDIAVKDNTTGKLIIVYRGCSIDDYQETYR Sbjct: 61 VSVERYRMTTNNFTNTKVAALGEDVLKIDVLDIAVKDNTTGKLIIVYRGCSIDDYQETYR 120 Query: 121 ANEITGESARFYYLTASNLQNGGYSTSYFNNATNR 155 ANEITGESARFYYLTASNLQNGGYSTSYFNNATNR Sbjct: 121 ANEITGESARFYYLTASNLQNGGYSTSYFNNATNR 155 >gi|24940|lcl|protein:vir:80620 Length: 140 # NCBI annotation: gp8 # Family: family:all:2792 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468474;genbank:gi:157325049;genbank:Ge neID:5601587 Length = 140 Score = 178 bits (452), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 79/140 (56%), Positives = 109/140 (77%) Query: 1 MATVKNQTVETGNRIYIMVKSAVLGRAQSLTGDRSFGTTGVYELGTIMPREHVFLKYTGT 60 MA+V NQTV TGN +Y+M+K ++GR QS +G+RS+GTTGVYE+G+IMP+EHV+LKY G+ Sbjct: 1 MASVTNQTVHTGNTVYLMIKGKIVGRCQSASGERSYGTTGVYEIGSIMPQEHVYLKYEGS 60 Query: 61 VSVERYRMTTNNFTNTKVAALGEDVLKIDVLDIAVKDNTTGKLIIVYRGCSIDDYQETYR 120 ++V+R RM + + ALGED+LK DV+DI + DNTT ++II YRGCS + Y E + Sbjct: 61 LTVDRLRMRKEDLAKLGITALGEDILKRDVIDIVMMDNTTKEVIIAYRGCSAETYNEEIK 120 Query: 121 ANEITGESARFYYLTASNLQ 140 ANEI ESARF YL+A+N++ Sbjct: 121 ANEIVSESARFLYLSAANVK 140 >gi|25129|lcl|protein:vir:80710 Length: 140 # NCBI annotation: structural protein # Family: family:all:2792 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504133;genbank:gi:158079320;genbank:Ge neID:5666358 Length = 140 Score = 166 bits (419), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 107/140 (76%) Query: 1 MATVKNQTVETGNRIYIMVKSAVLGRAQSLTGDRSFGTTGVYELGTIMPREHVFLKYTGT 60 MA+V NQTV TGN +Y+M+ + ++GRAQS +G+R +GT G+YE+G+IMP+EHV+LKY GT Sbjct: 1 MASVGNQTVHTGNTVYLMIGNKIIGRAQSASGERQYGTQGIYEIGSIMPQEHVYLKYEGT 60 Query: 61 VSVERYRMTTNNFTNTKVAALGEDVLKIDVLDIAVKDNTTGKLIIVYRGCSIDDYQETYR 120 +++ER RM + + + ALGED+L+ D++DI + DN T ++++ YRGCS Y E++ Sbjct: 61 ITLERMRMKKEDLASLGITALGEDILQRDIIDIVMMDNLTKEIVVAYRGCSAISYSESFT 120 Query: 121 ANEITGESARFYYLTASNLQ 140 ANE+T ES +F YLT++ ++ Sbjct: 121 ANEVTSESTQFTYLTSAKVK 140 >gi|9414|lcl|protein:vir:99300 Length: 142 # NCBI annotation: hypothetical protein # Family: family:all:2792 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024480;genbank:gi:48696439;genbank:GeneID :2948028 Length = 142 Score = 163 bits (412), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 74/138 (53%), Positives = 101/138 (73%) Query: 1 MATVKNQTVETGNRIYIMVKSAVLGRAQSLTGDRSFGTTGVYELGTIMPREHVFLKYTGT 60 MA+ QTV TGN + +M+K +GRAQS +G R +GTTGVYE+G+IMP+EHV+L+Y GT Sbjct: 1 MASEAKQTVHTGNTVLLMIKGKPVGRAQSASGQREYGTTGVYEIGSIMPQEHVYLRYEGT 60 Query: 61 VSVERYRMTTNNFTNTKVAALGEDVLKIDVLDIAVKDNTTGKLIIVYRGCSIDDYQETYR 120 ++VER RM NF + A+LGE++LK D++DI V DN T ++II Y GCS ++Y ET++ Sbjct: 61 ITVERLRMKKENFADLGYASLGEEILKKDIIDILVVDNLTKQVIISYHGCSANNYNETWQ 120 Query: 121 ANEITGESARFYYLTASN 138 NEI E F YLTAS+ Sbjct: 121 TNEIVTEEIEFSYLTASD 138 >gi|22597|lcl|protein:vir:95739 Length: 142 # NCBI annotation: ORF105 # Family: family:all:2792 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240911;genbank:gi:66395051;genbank:GeneID :5132680 Length = 142 Score = 163 bits (412), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 74/138 (53%), Positives = 101/138 (73%) Query: 1 MATVKNQTVETGNRIYIMVKSAVLGRAQSLTGDRSFGTTGVYELGTIMPREHVFLKYTGT 60 MA+ QTV TGN + +M+K +GRAQS +G R +GTTGVYE+G+IMP+EHV+L+Y GT Sbjct: 1 MASEAKQTVHTGNTVLLMIKGKPVGRAQSASGQREYGTTGVYEIGSIMPQEHVYLRYEGT 60 Query: 61 VSVERYRMTTNNFTNTKVAALGEDVLKIDVLDIAVKDNTTGKLIIVYRGCSIDDYQETYR 120 ++VER RM NF + A+LGE++LK D++DI V DN T ++II Y GCS ++Y ET++ Sbjct: 61 ITVERLRMKKENFADLGYASLGEEILKKDIIDILVVDNLTKQVIISYHGCSANNYNETWQ 120 Query: 121 ANEITGESARFYYLTASN 138 NEI E F YLTAS+ Sbjct: 121 TNEIVTEEIEFSYLTASD 138 >gi|21558|lcl|protein:vir:63764 Length: 123 # NCBI annotation: gp25 # Family: family:all:2792 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547630;genbank:GeneID:3783515 Length = 123 Score = 156 bits (394), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 68/123 (55%), Positives = 95/123 (77%) Query: 18 MVKSAVLGRAQSLTGDRSFGTTGVYELGTIMPREHVFLKYTGTVSVERYRMTTNNFTNTK 77 M+K ++GR QS +G+RS+GTTGVYE+G+IMP+EHV+LKY G+++V+R RM + Sbjct: 1 MIKGKIVGRCQSASGERSYGTTGVYEIGSIMPQEHVYLKYEGSLTVDRLRMRKEDLAKLG 60 Query: 78 VAALGEDVLKIDVLDIAVKDNTTGKLIIVYRGCSIDDYQETYRANEITGESARFYYLTAS 137 + ALGED+LK DV+DI + DNTT ++II YRGCS + Y E +ANEI ESARF YL+A+ Sbjct: 61 ITALGEDILKRDVIDIVMMDNTTKEVIIAYRGCSAETYNEEIKANEIVSESARFLYLSAA 120 Query: 138 NLQ 140 N++ Sbjct: 121 NVK 123 >gi|23709|lcl|protein:vir:96672 Length: 121 # NCBI annotation: ORF106 # Family: family:all:2792 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238555;genbank:gi:66391358;genbank:GeneID :5130454 Length = 121 Score = 136 bits (343), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 60/116 (51%), Positives = 85/116 (73%) Query: 1 MATVKNQTVETGNRIYIMVKSAVLGRAQSLTGDRSFGTTGVYELGTIMPREHVFLKYTGT 60 MA+ QTV TGN + +M+K +GRAQS +G RS+GT GVYE+G+IMP+EHV+LKY G Sbjct: 1 MASQAKQTVHTGNTVMLMIKGKPVGRAQSASGTRSYGTEGVYEIGSIMPQEHVYLKYEGE 60 Query: 61 VSVERYRMTTNNFTNTKVAALGEDVLKIDVLDIAVKDNTTGKLIIVYRGCSIDDYQ 116 ++VER RM NF A+LGE++LK D++DI V DN T ++++ Y GCS ++Y+ Sbjct: 61 LTVERLRMKKENFAKLGYASLGEEILKKDIIDIVVIDNLTKEVLVSYHGCSANNYE 116 >gi|15695|lcl|protein:vir:1173 Length: 171 # NCBI annotation: hypothetical protein # Family: family:all:129 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490622;genbank:gi:17313242;genbank:GeneID :927298 Length = 171 Score = 23.1 bits (48), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 12/56 (21%) Query: 43 ELGTIMPREHVFLKYTGTVSVERYRMTTNNFTNTKVAALGEDVLKIDVLDIAVKDN 98 E+G P E K T T S Y++ N GE+V++ID+L+ K N Sbjct: 114 EMGDAQPGEDTEHKITTTCSY--YKLVVN----------GEEVIEIDLLNFVEKVN 157 >gi|19603|lcl|protein:vir:4076 Length: 205 # NCBI annotation: major tail shaft protein # Family: family:all:11746 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043555;genbank:gi:9628689;genbank:GeneID: 1261181 Length = 205 Score = 20.8 bits (42), Expect = 9.4, Method: Compositional matrix adjust. Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 115 YQETYRANEITGESARFY 132 Y E YR ++ TG A FY Sbjct: 106 YAERYRDDDGTGYKATFY 123 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.316 0.132 0.366 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,617 Number of Sequences: 514 Number of extensions: 2748 Number of successful extensions: 13 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 9 length of query: 155 length of database: 206,069 effective HSP length: 65 effective length of query: 90 effective length of database: 172,659 effective search space: 15539310 effective search space used: 15539310 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 33 (17.3 bits)