BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:6384|NCBI_annot:terminase large subunit TerL|genbank:acc:NP_918997;genbank:gi:34610172;genbank:gi:91214212;gen bank:GeneID:2559603 (677 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|19767|lcl|protein:vir:6384 Length: 677 # NCBI annotation: ter... 1407 0.0 gi|12290|lcl|protein:vir:79539 Length: 699 # NCBI annotation: pu... 479 e-137 gi|5978|lcl|protein:vir:95489 Length: 659 # NCBI annotation: Put... 89 2e-19 gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: put... 89 2e-19 gi|15908|lcl|protein:vir:3418 Length: 641 # NCBI annotation: DNA... 74 6e-15 gi|17272|lcl|protein:vir:387 Length: 640 # NCBI annotation: gp2 ... 73 1e-14 gi|19539|lcl|protein:vir:10320 Length: 627 # NCBI annotation: OR... 73 1e-14 gi|24325|lcl|protein:vir:100809 Length: 488 # NCBI annotation: h... 33 0.013 gi|25110|lcl|protein:vir:80755 Length: 501 # NCBI annotation: pu... 29 0.16 gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: ter... 28 0.30 gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: put... 28 0.32 gi|22578|lcl|protein:vir:95547 Length: 605 # NCBI annotation: OR... 28 0.45 gi|9399|lcl|protein:vir:99333 Length: 605 # NCBI annotation: hyp... 28 0.45 gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T... 27 0.91 gi|14686|lcl|protein:vir:2509 Length: 204 # NCBI annotation: maj... 25 2.9 gi|12899|lcl|protein:vir:80432 Length: 510 # NCBI annotation: Bc... 25 3.1 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 25 4.1 gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA... 23 7.9 gi|1682|lcl|protein:vir:100637 Length: 214 # NCBI annotation: 77... 23 8.0 >gi|19767|lcl|protein:vir:6384 Length: 677 # NCBI annotation: terminase large subunit TerL # Family: family:all:140 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918997;genbank:gi:34610172;genbank:gi:912 14212;genbank:GeneID:2559603 Length = 677 Score = 1407 bits (3643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 677/677 (100%), Positives = 677/677 (100%) Query: 1 MVIDLADIFRPPERLTVSQAAAKYRKLNTPGAYVGDWFNETVPYMVEPMNTLTSRDFDAE 60 MVIDLADIFRPPERLTVSQAAAKYRKLNTPGAYVGDWFNETVPYMVEPMNTLTSRDFDAE Sbjct: 1 MVIDLADIFRPPERLTVSQAAAKYRKLNTPGAYVGDWFNETVPYMVEPMNTLTSRDFDAE 60 Query: 61 VFVGPAQCGKTDGLLLNFVGYTVKVDPMDMILYCPTNSAARDFSVRRIDRMHRHSPEIGA 120 VFVGPAQCGKTDGLLLNFVGYTVKVDPMDMILYCPTNSAARDFSVRRIDRMHRHSPEIGA Sbjct: 61 VFVGPAQCGKTDGLLLNFVGYTVKVDPMDMILYCPTNSAARDFSVRRIDRMHRHSPEIGA 120 Query: 121 MMARSRDTDNKFDKHYKDGTILTLSWPSVTEFAGRPIGRVCLTDYDRMPDDVDGDGEPFD 180 MMARSRDTDNKFDKHYKDGTILTLSWPSVTEFAGRPIGRVCLTDYDRMPDDVDGDGEPFD Sbjct: 121 MMARSRDTDNKFDKHYKDGTILTLSWPSVTEFAGRPIGRVCLTDYDRMPDDVDGDGEPFD 180 Query: 181 LASKRTTTFGSFAMTLAESSPSREIEEDGRKWLASSPHEAPPCKGILGLYNRGDRRRRYW 240 LASKRTTTFGSFAMTLAESSPSREIEEDGRKWLASSPHEAPPCKGILGLYNRGDRRRRYW Sbjct: 181 LASKRTTTFGSFAMTLAESSPSREIEEDGRKWLASSPHEAPPCKGILGLYNRGDRRRRYW 240 Query: 241 KCPHCGDWFEPTFKLLKWDDCGDAVSCADTVRMEAPCCGGRIEADQRNDLDLWGVWLKDG 300 KCPHCGDWFEPTFKLLKWDDCGDAVSCADTVRMEAPCCGGRIEADQRNDLDLWGVWLKDG Sbjct: 241 KCPHCGDWFEPTFKLLKWDDCGDAVSCADTVRMEAPCCGGRIEADQRNDLDLWGVWLKDG 300 Query: 301 ESMTADDKRVGTPRRSRIASFWMNGVVAAFISWRKLVANYITAEEDYERTGSQESLKKFY 360 ESMTADDKRVGTPRRSRIASFWMNGVVAAFISWRKLVANYITAEEDYERTGSQESLKKFY Sbjct: 301 ESMTADDKRVGTPRRSRIASFWMNGVVAAFISWRKLVANYITAEEDYERTGSQESLKKFY 360 Query: 361 NTDLGEPYFHRGNETVLLPETLKARAEVLREKHVPKAVRFLIGICDVQKNMWVCNVFGIA 420 NTDLGEPYFHRGNETVLLPETLKARAEVLREKHVPKAVRFLIGICDVQKNMWVCNVFGIA Sbjct: 361 NTDLGEPYFHRGNETVLLPETLKARAEVLREKHVPKAVRFLIGICDVQKNMWVCNVFGIA 420 Query: 421 PGNPYDIYVVDRFNVIKSQRVDHDGDREWVKPHAYLEDWQEVRTQVMEKMYPLDDDSGRV 480 PGNPYDIYVVDRFNVIKSQRVDHDGDREWVKPHAYLEDWQEVRTQVMEKMYPLDDDSGRV Sbjct: 421 PGNPYDIYVVDRFNVIKSQRVDHDGDREWVKPHAYLEDWQEVRTQVMEKMYPLDDDSGRV 480 Query: 481 MQLKMTFCDSGGREGVTGMAYNFYRQLREEGLHGRFHLIKGEPKPGHPRTRVGYPDANHK 540 MQLKMTFCDSGGREGVTGMAYNFYRQLREEGLHGRFHLIKGEPKPGHPRTRVGYPDANHK Sbjct: 481 MQLKMTFCDSGGREGVTGMAYNFYRQLREEGLHGRFHLIKGEPKPGHPRTRVGYPDANHK 540 Query: 541 DKWSAARGDVPVLFLNSNLLKDTALGRLEVVTPGSGMVHFPEWLPDSYYVQLVSERRTDK 600 DKWSAARGDVPVLFLNSNLLKDTALGRLEVVTPGSGMVHFPEWLPDSYYVQLVSERRTDK Sbjct: 541 DKWSAARGDVPVLFLNSNLLKDTALGRLEVVTPGSGMVHFPEWLPDSYYVQLVSERRTDK 600 Query: 601 GWVATSVKRNESWDLLYYCLGANASVLLLTEKFDWSSPPSWAEEWDKNTLVADASEQRFA 660 GWVATSVKRNESWDLLYYCLGANASVLLLTEKFDWSSPPSWAEEWDKNTLVADASEQRFA Sbjct: 601 GWVATSVKRNESWDLLYYCLGANASVLLLTEKFDWSSPPSWAEEWDKNTLVADASEQRFA 660 Query: 661 EKSSEEYDLAKIAAALA 677 EKSSEEYDLAKIAAALA Sbjct: 661 EKSSEEYDLAKIAAALA 677 >gi|12290|lcl|protein:vir:79539 Length: 699 # NCBI annotation: putative large terminase subunit # Family: family:all:140 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272515;genbank:gi:148609384;genbank:Ge neID:5204375 Length = 699 Score = 479 bits (1232), Expect = e-137, Method: Compositional matrix adjust. Identities = 266/660 (40%), Positives = 379/660 (57%), Gaps = 14/660 (2%) Query: 4 DLADIFRPPERLTVSQAAAKYRKLNTPGAYVGDWFNETVPYMVEPMNTLTSRDFDAEVFV 63 D++ F PP R+ +S+A K+ ++ W E PY++EPMN L SR++DA +FV Sbjct: 12 DISAGFSPPRRMPISEAVKKFMRVPKGAGNSVPWDPELTPYIIEPMNCLASREYDAVIFV 71 Query: 64 GPAQCGKTDGLLLNFVGYTVKVDPMDMILYCPTNSAARDFSVRRIDRMHRHSPEIGAMMA 123 GPA+ GKT GL+ ++ YT+ DP DM++ T AR+ S +R+DR R S + M+ Sbjct: 72 GPARTGKTIGLIDGWIVYTIVCDPSDMLVVQMTEDKAREHSKKRLDRTFRSSAAVKKRMS 131 Query: 124 RSRDTDNKFDKHYKDGTILTLSWPSVTEFAGRPIGRVCLTDYDRMPDDVDGDGEPFDLAS 183 R+ +N DK ++DG+ L + WPSV + V LTDYDR P+++D +G+ F LAS Sbjct: 132 PRRNDNNVHDKTFRDGSFLKIGWPSVNIMSSSDYRFVALTDYDRFPENIDSEGDGFSLAS 191 Query: 184 KRTTTFGSFAMTLAESSPSREIEEDGRKWLASSPHEAPPCKGILGLYNRGDRRRRYWKCP 243 KRTTTF S MTL ESSP R+I + KW SPHEAPP GIL LYNRGDRRR YW CP Sbjct: 192 KRTTTFMSAGMTLVESSPGRDICDS--KWRRKSPHEAPPTTGILSLYNRGDRRRWYWPCP 249 Query: 244 HCGDWFEPTFKLLK-WDDCGDAVSCADTVRMEAPCCGGRIEADQRNDLDLWGVWLKDGES 302 HCG++F+P + + + D ++ + P C G I A+++ +L+ GVWL++G+ Sbjct: 250 HCGEYFQPAMDAMTGYRNEPDPFKASEAAYLLCPHCSGIITAEKKRELNSAGVWLREGQV 309 Query: 303 MTADDKRVGTPRRSRIASFWMNGVVAAFISWRKLVANYITAEEDYERTGSQESLKKFYNT 362 + + G PRRSRIASFWM G AA+ +W +LV +TAE++YE TGS+E+L+ NT Sbjct: 310 IDRNGNVSGEPRRSRIASFWMEGPAAAYQTWAQLVYKLLTAEQEYEATGSEETLRAVINT 369 Query: 363 DLGEPYFHRGNETVLLPETLKARAEVLREKHVPKAVRFLIGICDVQKN---MWVCNVFGI 419 D G PY R + E L+ RAE + + VP V FL+ DVQ +V V G Sbjct: 370 DWGLPYLPRASMEQRKSELLEQRAEPVPSRSVPDGVNFLVAAVDVQAGRHRRFVVQVTGY 429 Query: 420 APGNPYDIYVVDRFNVIKSQRVDHDGDREWVKPHAYLEDWQEVRTQVMEKMYPLDDDSGR 479 G+ + +++DR+N+ +S R D DG+ + + P +Y EDW + T V K +PL D + Sbjct: 430 --GSRGERWIIDRYNITQSLRGDSDGESQRIDPASYPEDWDVLLTDVFHKSWPLASDPSQ 487 Query: 480 VMQLKMTFCDSGGREGVTGMAYNFYRQLREEGLHGRFHLIKGEPKPGHPRTRVGYPDANH 539 M+L DSGG +GVT AY F+R+ R +GL R +L KG+ +PD Sbjct: 488 QMRLMAMAVDSGGEDGVTDNAYKFWRRCRRDGLGKRIYLFKGDSIRRAKLITRTFPDNTG 547 Query: 540 KD-KWSAARGDVPVLFLNSNLLKDTALGRLEVVTPGSGMVHFPEWLPDSYYVQLVSERRT 598 + + + A GDVP+ L ++ LKD L +PG G VHFP+WL +Y +L E R+ Sbjct: 548 RTGRRAQAAGDVPLWLLQTDALKDRVNNALWRDSPGPGYVHFPDWLGSWFYDELTYEERS 607 Query: 599 DKG-WVATSVKRNESWDLLYYCLGANASVLLLT-EKFDWSSPPSWAEEWDKNTLVADASE 656 G W NE++DL+ Y A A V+L EK W P WA V D++E Sbjct: 608 SDGKWSKPGRGANEAFDLMVY---AEALVILHGYEKIRWPDAPEWASRETWLECVPDSTE 664 >gi|5978|lcl|protein:vir:95489 Length: 659 # NCBI annotation: Putative large subunit (GpA homolog) of DNA packaging dimer # Family: family:all:140 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293346;genbank:gi:148912767;genbank:Ge neID:5228141 Length = 659 Score = 89.0 bits (219), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 106/426 (24%), Positives = 174/426 (40%), Gaps = 69/426 (16%) Query: 35 GDWFNETVPYMVEPMNTLTSRDFDAEVFVGPAQCGKTDGLLLNFVGYTVKVDPMDMILYC 94 G W +T P+ V +N + + FV A+ G T L+ N +GY ++ +++++ Sbjct: 52 GKW--KTAPFQVAILNAMGNDLIRVVNFVKSARIGYTKMLMAN-IGYKIQHKRRNVLMWS 108 Query: 95 PTNSAARDFSVRRIDRMHRHSPEIGAMMA--RSRDTDNKFDKHY--KDGTILTLSWPSVT 150 PT+ A S ++ + R P + A+ + +DN D T+ TL + Sbjct: 109 PTDPDAEGISKSHVNGLIRDVPVLLALAPWYGRKHSDNTLDTKVFANRRTLWTLGGKAAR 168 Query: 151 EFAGRPIGRVCLTDYDRMPDDVDGDGEPFDLASKRTTTFGSFAMTLAESSPSREIEEDGR 210 + R V + + D++G+G P L +R + ++ S+P E G+ Sbjct: 169 NYRERSADEVIYDELSKFDADIEGEGSPTFLGDQRLRG-AVYPKSIRGSTPGTE----GQ 223 Query: 211 KWLASSPHEAPPCKGILGLYNRGDRRRRYW-KCPHCGDWFEPTFKLLKW----------- 258 + + E+P RR RY+ CPHCG + LKW Sbjct: 224 CQITKAADESP-------------RRLRYYIPCPHCGH-----EQTLKWGGKDCAFGVKY 265 Query: 259 --DDCGDAVSCADTVRMEAPCCGGRIEADQ--------RNDLDLWGVWLKDG-ESMTADD 307 +D G+A S E C G E + R ++ GVW +D E DD Sbjct: 266 IANDLGEASSVWYACENER--CSGTFEHHEMVVASERGRWKCEVSGVWTRDAMEWFGPDD 323 Query: 308 KRVGTPRRSRIASFWMNGVVAAFISWRKLVANYITAEEDYERTGSQESLKKFYNTDLGEP 367 + + TPR +F+ V + + SW L+ ++ + G +E LK F NT LGE Sbjct: 324 QPIRTPRS---VAFYCWAVYSTWTSWLDLIDEWLKVK------GDREKLKTFTNTILGEV 374 Query: 368 YFHRGNETVLLPETLKARAEVLREKHVPKAVRFLIGICDVQKNMWVCNVFGIAPGNPYDI 427 + E V +TL AR E VP L+G D Q + + V+ G + Sbjct: 375 WVEDEGERVEW-QTLYARRE--NYPKVPPQALVLMGGIDTQDDRYEGRVWAFGLGE--EA 429 Query: 428 YVVDRF 433 ++V RF Sbjct: 430 WLVHRF 435 >gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: putative phage terminase large subunit # Family: family:all:140 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039815;genbank:gi:126010850;genbank:Ge neID:5076210 Length = 689 Score = 88.6 bits (218), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 108/430 (25%), Positives = 167/430 (38%), Gaps = 22/430 (5%) Query: 5 LADIFRPPERLTVSQAAAKYRKLNTPGAYVGDWFNETVPYMVEPMNTLTSRDFDAEVFVG 64 +A++ + P T + A + R + G + +T PYM+ ++ + ++ FV Sbjct: 43 MAEMVKAPPPRTADEWARENRIMPPTSPIPGPFNPDTNPYMIPIVSAFANPQYNRVTFVM 102 Query: 65 PAQCGKTDGLLLNFVGYTVKVDPMDMILYCPTNSAARDFSVRRIDRMHRHSPEIGAMMAR 124 Q GK+ + N VG+ + DP ++ PT++ + M + + + Sbjct: 103 GTQMGKSVSME-NLVGWRLDDDPTPIMYVAPTSNLIDTTVEPKFMDMFQQAESLARKYDW 161 Query: 125 SRDTDNKFDKHYKDGTILTLSWP-SVTEFAGRPIGRVCLTDYDRMPDDVDGDGEPFDLAS 183 +R T K+ K + GT +W S TE A G V + + DR+ + +GD A Sbjct: 162 NRST--KYTK-WVGGTKFRFAWAGSPTELAADSAGLVLVDEVDRIVNTGEGDTTEIIEAR 218 Query: 184 KRTTTFGSFAMTLAESSPSREIEEDGRKWLA--SSPHEAPPCKGILGLYNRGDRRRRYWK 241 T + E E R L + H I L+ G R Sbjct: 219 GDAYVDSKIGYTATPTHGKVERTEHPRTGLTHWARSHRDALSSAIWRLWQSGTRHEWAVP 278 Query: 242 CPHCGDWFEPTFKLLKWDDCGDAVSCA-----DTVRMEAPCCGGRIEADQRNDLDLWGVW 296 CPHCG +F P +LL W G C + P G IE R ++ GV Sbjct: 279 CPHCGQYFIPHSELLWWPGKGTEEECTPDQAEKKAMLTCPRNGCMIEDKYRAAMNKRGVP 338 Query: 297 LKDGESMTADDKRVGTPRRSRIASF--WMNGVV--AAFISWRKLVANYITAEEDYERTGS 352 + G+++T D G + + F W++G+ AA S+ L A + +G Sbjct: 339 VAPGQTVTPDGVIEGEADTAGSSHFSMWVSGLCSFAAKKSYGFLAKKLAAALQ----SGD 394 Query: 353 QESLKKFYNTDLGEPYFHRGNETVLLPETLKARAEVLREKHVPKAVRFLIGICDVQKNMW 412 E+L+ YNT GE Y G V E +KA V LI DVQKN Sbjct: 395 PETLQGVYNTGFGECYALTGE--VPAWEEVKAMRWSYSAGEVLPGAEKLICTVDVQKNRL 452 Query: 413 VCNVFGIAPG 422 V V PG Sbjct: 453 VYVVRAWFPG 462 >gi|15908|lcl|protein:vir:3418 Length: 641 # NCBI annotation: DNA packaging protein # Family: family:all:140 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040581;genbank:gi:9626245;genbank:GeneID: 2703524 Length = 641 Score = 73.9 bits (180), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 143/662 (21%), Positives = 238/662 (35%), Gaps = 127/662 (19%) Query: 5 LADIFRPPERLTVSQAAAKYRKLNTPGAYVGDWFNETVPYMVEPMNTLTSRDFDAEVFVG 64 L +FRP + V A A Y G W ET+P+ MN + S D+ EV V Sbjct: 19 LRSLFRPEPQTAVEWADANYYLPKESAYQEGRW--ETLPFQRAIMNAMGS-DYIREVNVV 75 Query: 65 PAQCGKTDGLLLNFVGYTVKVDPMDMILYCPTNSAARDFSVRRIDRMHRHSPEIGAMM-- 122 + +LL Y ++ + +++ PT+ A +F ++ R P + A+ Sbjct: 76 KSARVGYSKMLLGVYAYFIEHKQRNTLIWLPTDGDAENFMKTHVEPTIRDIPSLLALAPW 135 Query: 123 --ARSRDTDNKFDKHYKDGTILTLSWPSVTEFAGRPIGRVCLTDYDRMPDDVDGDGEPFD 180 + RD + L + + + + + DD++ +G P Sbjct: 136 YGKKHRDNTLTMKRFTNGRGFWCLGGKAAKNYREKSVDVAGYDELAAFDDDIEQEGSPTF 195 Query: 181 LASKRTTTFGSFAMTLAESSPSREIEEDGRKWLASSPHEAPPCKGILGLYNRGDRRRRYW 240 L KR +G W S P +G + + Sbjct: 196 LGDKRI---------------------EGSVWPKSIRGSTPKVRGTCQIERAASESPHFM 234 Query: 241 K----CPHCGDWFEPTFKL--------LKW--DDCGDAVSCADTVRMEAPCCGGRIE--- 283 + CPHCG+ E K LKW DD E C R + Sbjct: 235 RFHVACPHCGE--EQYLKFGDKETPFGLKWTPDDPSSVFYLC-----EHNACVIRQQELD 287 Query: 284 -ADQRNDLDLWGVWLKDGESMTADDKRVGTPRRSRIASFWMNGVVAAFISWRKLVANYIT 342 D R + G+W +DG + P S W + F +W ++V +++ Sbjct: 288 FTDARYICEKTGIWTRDGILWFSSSGEEIEPPDSVTFHIWT--AYSPFTTWVQIVKDWMK 345 Query: 343 AEEDYERTGSQESLKKFYNTDLGEPYFHRGNETVLLPETLKARAEVLREKH------VPK 396 + D TG + K F NT LGE + + E + AEV+ E+ VP Sbjct: 346 TKGD---TGKR---KTFVNTTLGETWEAKIGE--------RPDAEVMAERKEHYSAPVPD 391 Query: 397 AVRFLIGICDVQKNMWVCNVFGIAPGNPYDIYVVDRFNVIKSQRVDHDGDREWVKPHAYL 456 V +L D Q + + V+G PG + +++DR ++ HD ++ ++ Sbjct: 392 RVAYLTAGIDSQLDRYEMRVWGWGPGE--ESWLIDRQIIMGR----HDDEQTLLRVD--- 442 Query: 457 EDWQEVRTQVMEKMYPLDDDSGRVMQLKMTFCDSGGREGVTGMAYNFYRQLREEGLHGRF 516 + + K Y + G M + D+GG + Y + ++ GL R Sbjct: 443 --------EAINKTYTRRN--GAEMSISRICWDTGGIDPTI-----VYERSKKHGLF-RV 486 Query: 517 HLIKGEPKPGHPRTRVGYPDANHKDKWSAARGDVPVLFLNSNLLKDTALGRLEVVTPGS- 575 IKG G P + P +K+ V + + ++ K+ R + G Sbjct: 487 IPIKGASVYGKPVASM--PRKRNKN-------GVYLTEIGTDTAKEQIYNRFTLTPEGDE 537 Query: 576 ---GMVHFPEWLPDSYYV----QLVSERRTDKGWV--------ATSVKRNESWDLLYYCL 620 G VHFP PD + + QL +E + +K WV + +RNE+ D Y L Sbjct: 538 PLPGAVHFPN-NPDIFDLTEAQQLTAEEQVEK-WVDGRKKILWDSKKRRNEALDCFVYAL 595 Query: 621 GA 622 A Sbjct: 596 AA 597 >gi|17272|lcl|protein:vir:387 Length: 640 # NCBI annotation: gp2 # Family: family:all:140 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046897;genbank:gi:9630466;genbank:GeneID: 1261641 Length = 640 Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 143/662 (21%), Positives = 240/662 (36%), Gaps = 127/662 (19%) Query: 5 LADIFRPPERLTVSQAAAKYRKLNTPGAYVGDWFNETVPYMVEPMNTLTSRDFDAEVFVG 64 L ++RP V A A Y G W ET+P+ MN + S + Sbjct: 19 LKSLYRPEPMTAVEWADAHYYLPKESAYQEGRW--ETLPFQRAIMNAMGSDYIRIVNVIK 76 Query: 65 PAQCGKTDGLLLNFVGYTVKVDPMDMILYCPTNSAARDFSVRRIDRMHRHSPEIGAMM-- 122 A+ G + +LL + Y ++ + +L+ PT+ A +F ++ R P + ++ Sbjct: 77 SARVGYSK-MLLGVIAYFIEHKQRNELLWLPTDGDADNFMKSHVEPTIRDVPSLLSLAPW 135 Query: 123 --ARSRDTDNKFDKHYKDGTILTLSWPSVTEFAGRPIGRVCLTDYDRMPDDVDGDGEPFD 180 + RD + L + + + + V + D++ +G P Sbjct: 136 YGKKHRDNTLSMKRFTNGRGFWCLGGKAAKNYREKSVDVVGYDELAAFDADIEKEGSPTF 195 Query: 181 LASKRTTTFGSFAMTLAESSPSREIEEDGRKWLASSPHEAPPCKGILGL----YNRGDRR 236 L KR +G W S P +G + G Sbjct: 196 LGDKRI---------------------EGSVWPKSIRGSTPKLRGTCQIERAAKESGHFM 234 Query: 237 RRYWKCPHCGDWFEPTFKL--------LKWDDCGDAVSCADTVRM---EAPCCGGRIEAD 285 R + CPHCG+ E K KW+ A+TV C + E D Sbjct: 235 RFHVACPHCGE--EQYLKFGDRDTPFGFKWEP-----EQAETVYYLCEHNACVIKQHELD 287 Query: 286 QRND---LDLWGVWLKDGESMTADDKRVGTPRRSRIASFWMNGVVAAFISWRKLVANYIT 342 N +L G+W +DG + P S W + F +W ++V ++ Sbjct: 288 FSNARYICELTGIWTRDGLRWFSSSNAEIDPPESVTFHIWT--AYSPFTTWVQIVKDWFK 345 Query: 343 AEEDYERTGSQESLKKFYNTDLGEPYFHRGNETVLLPETLKARAEVLREKH------VPK 396 + D TG + K F NT LGE + + + + A+VL E+ VP+ Sbjct: 346 TKGD---TGKR---KTFVNTTLGETWEAKIGD--------RPDADVLAERKEHFDAAVPE 391 Query: 397 AVRFLIGICDVQKNMWVCNVFGIAPGNPYDIYVVDRFNVIKSQRVDHDGDREWVKPHAYL 456 V +L D Q + + V+G PG + +++DR ++ HD + + Sbjct: 392 RVAYLTAGIDSQLDRYEMRVWGWGPGE--ESWLIDRQIIMGR----HDDESTLARVD--- 442 Query: 457 EDWQEVRTQVMEKMYPLDDDSGRVMQLKMTFCDSGGREGVTGMAYNFYRQLREEGLHGRF 516 + + K Y + G M + D GG + + YN ++ HG F Sbjct: 443 --------EAINKTYTRRN--GVEMSISRICWDIGGIDPT--IVYNRSKK------HGLF 484 Query: 517 HLIKGEPKPGHPRTRVGYPDANHKDKWSAARGDVPVLFLNSNLLKDTALGRLEVVTPG-- 574 +I P + G P AN K + + V + + ++ K+ R ++ G Sbjct: 485 RVI-----PIKGASVYGKPVANMPRKRN--KNGVYLTEVGTDTAKEQIYNRFTLIVEGDE 537 Query: 575 --SGMVHFPEWLPDSYYV----QLVSERRTDKGWV--------ATSVKRNESWDLLYYCL 620 +G VHFP PD Y + QL +E +K WV + +RNE+ D Y L Sbjct: 538 PLAGAVHFPN-NPDIYDLSEAQQLTAEELVEK-WVDGKRKIIWDSKKRRNEALDCFVYAL 595 Query: 621 GA 622 A Sbjct: 596 AA 597 >gi|19539|lcl|protein:vir:10320 Length: 627 # NCBI annotation: ORF22 # Family: family:all:140 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758915;genbank:gi:27311189;genbank:GeneID :956138 Length = 627 Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 147/642 (22%), Positives = 228/642 (35%), Gaps = 110/642 (17%) Query: 11 PPERLTVSQAAAKYRKLNTPGAYVGDWFNETVPYMVEPMNTLTSRDFDAEVFVGPAQCGK 70 PP LT+SQ K L G W +T P+ + + + + + + + G Sbjct: 21 PPPNLTISQWGDKNYVLPEEHG-GGKW--KTKPFQIGIADAMCDPEEERVTVMKSMRVGY 77 Query: 71 TDGLLLNFVGYTVKVDPMDMILYCPTNSAARDFSVRRIDRMHRHSPEIGAMMARSRDTDN 130 T + L +GY + DP M++ PT A FS I M R P + + RD D Sbjct: 78 TKIVDLA-IGYYMDADPCSMLVVQPTIDDAEGFSKDEIAPMLRDVPCLQGKV--QRDDDT 134 Query: 131 KFDKHYKDGTILTLSWPSVTEFAGRPIGRVCLTDYDRMPDDVDGDGEPFDLASKRTTTFG 190 K Y G++ + S T F + V + P + DG+P R TF Sbjct: 135 LLKKVYPGGSLTLVGANSPTGFRRLTVRIVIFDEMSAYPANTGKDGDPVRQGEGR--TFS 192 Query: 191 SFAMTLAESSPSREIEEDGRKWLA-SSPHEAPPCKGILGLYNRGDRRRRYWKCPHCGDWF 249 +F RK +A S+P A C+ I + R D+R + CPHCG Sbjct: 193 AF----------------NRKIIAGSTPTIAGVCR-IEKEFIRSDQRYFHVPCPHCGH-- 233 Query: 250 EPTFKLLKWDDCGDAVSCADTVRMEAPCCGGRIEADQRNDLDLWG--------------- 294 +L+W + + P C IE + ++ G Sbjct: 234 ---KHILQWSNFRWPEGQPELAHFVCPSCKKDIEEGSKKEMVAAGEFRSIKPFTCCGHEQ 290 Query: 295 ---VWLKDGESMTADDKRVGTPRRSRIASF--WMNGVVAAFISWRKLVANYITAEEDYER 349 W K G + K G + S A F W W KL + ++D Sbjct: 291 EPEAWDKKGRPIC---KHCGEVKISGHAGFHIWAAYSDLPNAKWSKLAKYWEEVKDD--- 344 Query: 350 TGSQESLKKFYNTDLGEPYFHRGNETVLLPETLKARAEVLREKH---VPKAVRFLIGICD 406 + + NT GE Y + ET + + L R E + H VP+AVR ++ D Sbjct: 345 ---PDEKVVYVNTIRGETY--KETETEVDWKPLYDRREPYGDDHDGKVPEAVRIILATVD 399 Query: 407 VQKNMWVCNVFGIAPGNPYDIYVVDRFNVIKSQRVDHDGDREWVKPHAYLEDWQEVRTQV 466 Q N GI G ++++++R V Q + P + T+ Sbjct: 400 TQDNRLEMTTIGIGEGE--EVWLLNR-KVFMGQPDN---------PETLAQ-----LTRA 442 Query: 467 MEKMYPLDDDSGRVMQLKMTFCDSGGREGVTGMAYNFYRQLREEGLHGRFHLIKGEPKPG 526 +++ Y G M + D G T +AY R + G KP Sbjct: 443 LDRTY--THACGFSMGITACAIDVQGHYYDTMLAYCAQHSDRCVAIRGGNDYAAPAIKP- 499 Query: 527 HPRTRVGYPDANHKDKWSAARGDVPVLFLNSNLLKDTALGRLEVVTPGSGMVHFPEW--L 584 P ++ + +P+ L N +K+ RL PG +H+P+ Sbjct: 500 --------PSRSNVYR-------IPLYTLGVNNIKNRIAKRLRFKYPGRFFIHWPKSNEF 544 Query: 585 PDSYYVQLVSERRTD--KGWVATSV------KRNESWDLLYY 618 Y+ QL +E K + V RNE+WDLL Y Sbjct: 545 EVDYFEQLTAETVVTEYKNGIPYRVFKNPTKARNEAWDLLVY 586 >gi|24325|lcl|protein:vir:100809 Length: 488 # NCBI annotation: hypothetical protein # Family: family:all:1430 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164748;genbank:gi:56693161;genbank:GeneID :3197442 Length = 488 Score = 32.7 bits (73), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 63/172 (36%), Gaps = 42/172 (24%) Query: 210 RKWLASSPHEAPPCKGILGLYNRGDRRRRYWKCPHCGDW----FEPTFKLLKWDDCGDAV 265 R+W S+P + P GI Y D+R+ ++C HCG +E KL+ D Sbjct: 86 RRW--STPTQ--PNMGIDLKYAESDQRKWVYRCQHCGLVQQLDYEKNIKLINKDGIDLIG 141 Query: 266 SCADTVRMEAPC--CGGRIEADQRNDLDLW--GVWLKDGESMTADDKRVGTPRRSRIASF 321 D + C CG I D W G W + PR R + Sbjct: 142 KVIDEGTYQYVCRKCGKPI--------DRWYSGFW------------DITAPRSGRAHGY 181 Query: 322 WMNGVVAAFISWRKLVANYITAEEDYERTGSQESLKKFYNTDLGEPYFHRGN 373 ++ + A ++S ++ + A S + FYN LG P+ N Sbjct: 182 EISQMDAVWVSASQMKQKELEA----------PSKQFFYNYSLGRPFQDTSN 223 >gi|25110|lcl|protein:vir:80755 Length: 501 # NCBI annotation: putative large terminase # Family: family:all:1430 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504114;genbank:gi:158079301;genbank:Ge neID:5666404 Length = 501 Score = 29.3 bits (64), Expect = 0.16, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 65/182 (35%), Gaps = 25/182 (13%) Query: 196 LAESSPSREIEEDGRKWLASSPHEAPPCKGILGLYNRGDRRRRYWKCPHCGDWFEPTFKL 255 LAE+S + K + + P GI GL+ D+ KC C + E ++ Sbjct: 80 LAEASALESMSSSPYKIVNRWSTPSAPDMGIHGLFKGSDQHWYLHKCEKCNYYNEMSY-- 137 Query: 256 LKWDDCGDAVSCADTVRMEAPC-CGGRIEADQRNDLDLWGVWLKDGESMTADDKRVGTPR 314 D EAP G I +D+ + DG S ++ G P Sbjct: 138 -------------DAYTPEAPVESRGNILCVNPKGVDVVAKTVVDG-SFQFVCQKCGEPL 183 Query: 315 RSRIASFWM--------NGVVAAFISWRKLVANYITAEEDYERTGSQESLKKFYNTDLGE 366 W+ NG+ ++ A ++TA++ + S + FYN LG Sbjct: 184 DRWYNGVWVPKYPDRTKNGLGTRGYMISQMNAVWVTADQLKTKELQSLSKQAFYNYTLGY 243 Query: 367 PY 368 PY Sbjct: 244 PY 245 >gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438140;genbank:gi:16271803;genbank:GeneID :929285 Length = 375 Score = 28.5 bits (62), Expect = 0.30, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 452 PHAYLEDWQEVRTQVMEKMYPLDDDSGRVMQ------LKMTFCDSGGREGVTGMAYNFYR 505 P+ Y D R +Y L D V+ ++M FC GG+ T M+ N Sbjct: 153 PYLYKRDVLGQRVMPQGVIYGLFDTEKNVLDALIGEPVEMYFCADGGQSDATSMSCNIVT 212 Query: 506 QLREEG 511 ++R+ G Sbjct: 213 RVRDNG 218 >gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795576;genbank:gi:28876345;genbank:GeneID :1257867 Length = 403 Score = 28.1 bits (61), Expect = 0.32, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 452 PHAYLEDWQEVRTQVMEKMYPLDDDSGRVMQ------LKMTFCDSGGREGVTGMAYNFYR 505 P+ Y D R +Y L D V+ ++M FC GG+ T M+ N Sbjct: 181 PYLYKRDVLGQRVMPQGVIYGLFDTEKNVLDALIGEPVEMYFCADGGQSDATSMSCNIVT 240 Query: 506 QLREEG 511 ++R+ G Sbjct: 241 RVRDNG 246 >gi|22578|lcl|protein:vir:95547 Length: 605 # NCBI annotation: ORF010 # Family: family:all:1430 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240892;genbank:gi:66394959;genbank:GeneID :5132488 Length = 605 Score = 27.7 bits (60), Expect = 0.45, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 17/124 (13%) Query: 325 GVVAAFISWRKLVANYITAEEDYERTGSQESLKKFYNTDLGEPYFHRGNETVLL---PET 381 GV I+ ++ A +I+A+E E+ + ES + FYN LG P+ E V L E Sbjct: 311 GVRGYLIT--QMNAVWISADELKEKEMNTESKQAFYNYILGYPF-----EDVKLRVNEED 363 Query: 382 LKARAEVLREKHVPKAVRF---LIGICDVQKNMWVCNVFGIAPGNPYDIYVVDRFNVIKS 438 + + E + K R+ IGI D W+ V G+ P D+ + F+V K Sbjct: 364 VYGNKSPIAETQLMKRDRYSHIAIGI-DWGNTHWIT-VHGMLPNGKVDL--IRLFSVKKM 419 Query: 439 QRVD 442 R D Sbjct: 420 TRPD 423 >gi|9399|lcl|protein:vir:99333 Length: 605 # NCBI annotation: hypothetical protein # Family: family:all:1430 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024465;genbank:gi:48696425;genbank:GeneID :2948061 Length = 605 Score = 27.7 bits (60), Expect = 0.45, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 17/124 (13%) Query: 325 GVVAAFISWRKLVANYITAEEDYERTGSQESLKKFYNTDLGEPYFHRGNETVLL---PET 381 GV I+ ++ A +I+A+E E+ + ES + FYN LG P+ E V L E Sbjct: 311 GVRGYLIT--QMNAVWISADELKEKEMNTESKQAFYNYILGYPF-----EDVKLRVNEED 363 Query: 382 LKARAEVLREKHVPKAVRF---LIGICDVQKNMWVCNVFGIAPGNPYDIYVVDRFNVIKS 438 + + E + K R+ IGI D W+ V G+ P D+ + F+V K Sbjct: 364 VYGNKSPIAETQLMKRDRYSHIAIGI-DWGNTHWIT-VHGMLPNGKVDL--IRLFSVKKM 419 Query: 439 QRVD 442 R D Sbjct: 420 TRPD 423 >gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T4-like DNA packaging large subunit terminase # Family: family:all:147 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214360;genbank:gi:61806000;genbank:GeneID :3294466 Length = 547 Score = 26.6 bits (57), Expect = 0.91, Method: Compositional matrix adjust. Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Query: 635 WSSPPSWAEEWDKNTLVADASEQRF 659 WS P EEW + T +A+ SEQ+F Sbjct: 235 WSEVPGRDEEWKEQT-IANTSEQQF 258 >gi|14686|lcl|protein:vir:2509 Length: 204 # NCBI annotation: major tail subunit gp14 # Family: family:all:698 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569750;genbank:gi:18496900;genbank:GeneID :932335 Length = 204 Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust. Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 249 FEPTFKLLKWDDCGDAVSCAD 269 FEPTFK+LK D V +D Sbjct: 178 FEPTFKVLKGTDGNHVVQYSD 198 >gi|12899|lcl|protein:vir:80432 Length: 510 # NCBI annotation: BcepGomrgp04 # Family: family:all:144 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210224;genbank:gi:146329916;genbank:Ge neID:5123541 Length = 510 Score = 25.0 bits (53), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 9/73 (12%) Query: 394 VPKAVRFLIGICDVQK-NMWVCNVFGIAPGNPYD------IYVVDRFNVIKSQRVDHDGD 446 P+ V L I D K W+ + + G D ++V RFN+ S RVD D Sbjct: 244 TPEYVAELESIKDPNKRKAWLHGDWNVVAGGAIDDLWREEVHVKPRFNIPASWRVDRSFD 303 Query: 447 REWVKPHAYLEDW 459 W H + W Sbjct: 304 --WGSTHPFYVGW 314 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 24.6 bits (52), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%) Query: 243 PHCGDWFEPTFKLLKWDDCGDAVSCA----DTVRMEAPCCGGRIEADQRNDLDLWGV 295 PH D F + L +D SC T + C G IE ++ N+L W V Sbjct: 462 PHNADTFLQDLEELGFDCVEIFQSCKWLNDPTEDFKLECEAGNIEYNEENELLSWSV 518 >gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813786;genbank:gi:29366741;genbank:GeneID :1258833 Length = 582 Score = 23.5 bits (49), Expect = 7.9, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 18/34 (52%) Query: 206 EEDGRKWLASSPHEAPPCKGILGLYNRGDRRRRY 239 ++ G L P+ A CKG+ + +GDR RY Sbjct: 308 QDKGPTTLIWMPNAANECKGVPVVGLKGDRFHRY 341 >gi|1682|lcl|protein:vir:100637 Length: 214 # NCBI annotation: 77ORF020 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958612;genbank:gi:41189535;genbank:GeneID :2743783 Length = 214 Score = 23.5 bits (49), Expect = 8.0, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%) Query: 132 FDKHYKDGTILTLSWPSVTEFAGRPIGRVCLTDYDRMPDDVDGDG 176 F + KDGT T+ P V + G D+D ++V+G+ Sbjct: 114 FRQERKDGTFRTVLLPKVMFTNPKIDGETAEKDWDFSSEEVEGEA 158 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.136 0.436 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 340,325 Number of Sequences: 514 Number of extensions: 16356 Number of successful extensions: 67 Number of sequences better than 100.0: 20 Number of HSP's better than 100.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 23 length of query: 677 length of database: 206,069 effective HSP length: 78 effective length of query: 599 effective length of database: 165,977 effective search space: 99420223 effective search space used: 99420223 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)