Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phBC6A51 | Genbank acc : NC_004820 | Aclame index mge :127

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 75

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	48	lcl\|Aclame:protein:vir:6149\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	46	lcl\|Aclame:protein:vir:6147\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	45	lcl\|Aclame:protein:vir:6146\|NCBI_annot:hypothetical	Blast (e-value=2e-52)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	53	lcl\|Aclame:protein:vir:6154\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	54	lcl\|Aclame:protein:vir:6155\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97255 protein:vir:94933 protein:vir:7771	M6 Xp15 Bxz2	13 % 13 % 12 %
Portal	protein:vir:105889 protein:vir:94101 protein:vir:79043	phiETA3 96 phiC2	17 % 17 % 15 %
TermL	protein:vir:99234 protein:vir:103868 protein:vir:79222	DMS3 D3112 Phage MP22	28 % 28 % 24 %
Ne1	protein:vir:6154 protein:vir:96121 protein:vir:101594	phBC6A51 37 11b	100 % 23 % 23 %
Tc1	protein:vir:6155 protein:vir:195 protein:vir:102086	phBC6A51 HK97 Fah	100 % 16 % 14 %