Query lcl|Aclame:protein:vir:270|NCBI_annot:putative major capsid protein|genbank:acc:NP_536650;genbank:gi:17975128;genbank:GeneID:929084 Match_columns 341 No_of_seqs 117 out of 263 Neff 5.0 Searched_HMMs 1612 Date Sat Nov 30 03:42:03 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_23 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_23_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:270 Length: 341 # 100.0 6E-188 4E-191 1047.1 28.6 341 1-341 1-341 (341) 2 protein:vir:78777 Length: 358 100.0 2E-173 1E-176 967.8 29.4 341 1-341 1-355 (358) 3 protein:vir:78186 Length: 337 100.0 2E-172 1E-175 961.5 28.0 323 5-332 1-337 (337) 4 protein:vir:100331 Length: 342 100.0 3E-172 2E-175 960.9 28.3 324 5-331 1-342 (342) 5 protein:vir:79157 Length: 339 100.0 2E-172 1E-175 961.5 27.5 324 5-333 1-339 (339) 6 protein:vir:5694 Length: 357 # 100.0 9E-172 5E-175 958.4 28.3 334 5-341 1-356 (357) 7 protein:vir:2016 Length: 357 # 100.0 2E-171 1E-174 956.5 28.2 333 5-341 1-356 (357) 8 protein:vir:79171 Length: 337 100.0 3E-171 2E-174 955.7 28.5 323 5-332 1-337 (337) 9 protein:vir:6061 Length: 357 # 100.0 3E-171 2E-174 955.5 28.5 333 5-341 1-356 (357) 10 protein:vir:104011 Length: 337 100.0 3E-171 2E-174 955.4 28.4 323 5-332 1-337 (337) 11 protein:vir:98566 Length: 355 100.0 1E-170 8E-174 952.1 28.8 333 5-340 1-355 (355) 12 protein:vir:1829 Length: 355 # 100.0 2E-170 1E-173 950.6 28.9 332 5-339 1-355 (355) 13 protein:vir:1153 Length: 338 # 100.0 2E-170 1E-173 950.9 28.4 322 5-329 1-338 (338) 14 protein:vir:3746 Length: 336 # 100.0 6E-163 4E-166 909.9 27.7 319 8-333 1-336 (336) 15 protein:vir:98856 Length: 343 100.0 1E-162 9E-166 908.0 28.4 326 5-337 1-343 (343) 16 protein:vir:3783 Length: 336 # 100.0 1E-162 8E-166 908.3 27.7 319 8-333 1-336 (336) 17 protein:vir:3158 Length: 321 # 100.0 2.6E-72 1.6E-75 413.0 22.7 308 1-339 1-321 (321) 18 protein:vir:99424 Length: 360 100.0 8.5E-42 5.3E-45 245.7 20.1 310 1-332 1-360 (360) 19 protein:vir:4197 Length: 314 # 100.0 8.1E-41 5E-44 240.4 19.4 297 1-328 1-314 (314) 20 protein:vir:4159 Length: 315 # 100.0 1.1E-35 7E-39 212.2 16.6 298 4-324 1-315 (315) 21 protein:vir:4092 Length: 390 # 98.8 2.5E-09 1.5E-12 67.8 17.2 301 1-341 68-388 (390) 22 protein:vir:100247 Length: 425 98.6 7.2E-09 4.5E-12 65.2 16.4 302 1-333 105-425 (425) 23 protein:vir:100135 Length: 418 98.5 5.2E-08 3.2E-11 60.5 18.5 300 1-335 100-418 (418) 24 protein:vir:81100 Length: 415 98.5 6.9E-08 4.3E-11 59.8 18.0 304 1-338 97-415 (415) 25 protein:vir:98339 Length: 415 98.5 6.9E-08 4.3E-11 59.8 18.0 304 1-338 97-415 (415) 26 protein:vir:79987 Length: 415 98.5 6.9E-08 4.3E-11 59.8 18.0 304 1-338 97-415 (415) 27 protein:vir:9410 Length: 415 # 98.4 1.6E-07 9.6E-11 57.9 18.2 302 1-338 97-415 (415) 28 protein:vir:1328 Length: 392 # 98.3 1.6E-07 9.9E-11 57.8 15.8 295 1-333 71-392 (392) 29 protein:vir:4339 Length: 395 # 98.3 3.8E-07 2.4E-10 55.8 17.5 299 1-332 85-395 (395) 30 protein:vir:4700 Length: 415 # 98.3 5.8E-07 3.6E-10 54.8 18.4 303 1-338 97-415 (415) 31 protein:vir:4600 Length: 415 # 98.3 5.8E-07 3.6E-10 54.8 18.4 303 1-338 97-415 (415) 32 protein:vir:97053 Length: 390 98.2 5.4E-07 3.4E-10 54.9 17.2 287 1-325 79-390 (390) 33 protein:vir:8102 Length: 543 # 98.2 2.8E-07 1.8E-10 56.5 15.6 295 1-333 212-543 (543) 34 protein:vir:100172 Length: 394 98.2 1.3E-06 7.9E-10 52.9 18.9 287 1-337 84-394 (394) 35 protein:vir:1886 Length: 385 # 98.2 4.1E-07 2.6E-10 55.6 15.9 296 1-333 66-385 (385) 36 protein:vir:191 Length: 385 # 98.2 4.1E-07 2.6E-10 55.6 15.9 296 1-333 66-385 (385) 37 protein:vir:6212 Length: 434 # 98.2 6E-07 3.7E-10 54.7 16.5 291 1-333 112-434 (434) 38 protein:vir:2504 Length: 305 # 98.2 1E-06 6.5E-10 53.4 17.5 278 23-334 1-305 (305) 39 protein:vir:94771 Length: 298 98.1 2.5E-07 1.5E-10 56.8 13.7 281 20-331 1-298 (298) 40 protein:vir:4511 Length: 409 # 98.1 1.1E-06 6.9E-10 53.2 17.2 298 1-333 80-409 (409) 41 protein:vir:41 Length: 299 # N 98.1 7.1E-07 4.4E-10 54.3 15.5 275 24-335 1-299 (299) 42 protein:vir:10364 Length: 390 98.1 1.8E-06 1.1E-09 52.1 17.5 287 1-330 78-390 (390) 43 protein:vir:6242 Length: 390 # 98.1 1.1E-06 7.1E-10 53.2 15.8 291 1-333 77-390 (390) 44 protein:vir:94673 Length: 419 98.1 2.1E-06 1.3E-09 51.7 17.3 298 1-331 94-419 (419) 45 protein:vir:4456 Length: 401 # 98.0 1.6E-06 9.8E-10 52.4 16.4 299 1-332 75-401 (401) 46 protein:vir:81070 Length: 390 98.0 2.7E-06 1.7E-09 51.1 17.5 293 1-330 78-390 (390) 47 protein:vir:4226 Length: 326 # 98.0 8.4E-07 5.2E-10 53.9 14.6 299 3-333 1-326 (326) 48 protein:vir:105905 Length: 304 98.0 1.1E-06 6.8E-10 53.3 15.0 281 1-331 1-304 (304) 49 protein:vir:94142 Length: 304 98.0 1.1E-06 6.8E-10 53.3 15.0 281 1-331 1-304 (304) 50 protein:vir:95376 Length: 425 98.0 1.6E-06 9.6E-10 52.4 15.6 298 1-336 108-425 (425) 51 protein:vir:7855 Length: 497 # 98.0 2.5E-06 1.6E-09 51.3 16.1 319 1-331 114-497 (497) 52 protein:vir:101650 Length: 497 98.0 2.5E-06 1.6E-09 51.3 16.1 319 1-331 114-497 (497) 53 protein:vir:1025 Length: 408 # 97.9 6.9E-06 4.3E-09 48.9 18.2 292 1-341 82-407 (408) 54 protein:vir:7771 Length: 330 # 97.9 1.2E-06 7.5E-10 53.0 13.7 293 1-339 1-330 (330) 55 protein:vir:104085 Length: 320 97.9 2.5E-06 1.6E-09 51.3 15.4 287 4-333 1-320 (320) 56 protein:vir:81160 Length: 371 97.9 3.3E-06 2.1E-09 50.6 15.8 281 1-332 67-371 (371) 57 protein:vir:100884 Length: 389 97.9 1.2E-05 7.3E-09 47.6 18.6 279 1-334 83-389 (389) 58 protein:vir:95763 Length: 297 97.9 3.7E-06 2.3E-09 50.4 15.5 279 1-333 1-297 (297) 59 protein:vir:4953 Length: 397 # 97.9 1.1E-05 6.7E-09 47.8 17.9 281 1-334 82-397 (397) 60 protein:vir:3991 Length: 404 # 97.8 9.3E-06 5.8E-09 48.2 17.4 290 1-338 82-404 (404) 61 protein:vir:96392 Length: 324 97.8 1E-05 6.4E-09 47.9 17.3 300 1-340 1-324 (324) 62 protein:vir:78830 Length: 324 97.8 1E-05 6.4E-09 47.9 17.3 300 1-340 1-324 (324) 63 protein:vir:81227 Length: 413 97.8 2.1E-05 1.3E-08 46.2 18.1 293 1-332 85-413 (413) 64 protein:vir:103955 Length: 324 97.7 1.5E-05 9.6E-09 47.0 17.3 295 1-335 1-324 (324) 65 protein:vir:7409 Length: 408 # 97.7 1.7E-05 1E-08 46.8 17.4 292 1-341 82-407 (408) 66 protein:vir:485 Length: 407 # 97.7 1.3E-05 8.2E-09 47.3 16.6 306 1-334 74-407 (407) 67 protein:vir:97148 Length: 324 97.7 2.7E-05 1.7E-08 45.6 18.0 294 1-335 1-324 (324) 68 protein:vir:78640 Length: 352 97.6 3.5E-05 2.2E-08 45.0 18.5 280 1-333 39-352 (352) 69 protein:vir:104256 Length: 458 97.6 1.3E-05 8.2E-09 47.3 15.1 294 1-332 123-458 (458) 70 protein:vir:9704 Length: 394 # 97.6 3.9E-05 2.4E-08 44.8 17.8 274 1-331 91-394 (394) 71 protein:vir:95963 Length: 395 97.6 3.4E-05 2.1E-08 45.1 17.2 301 1-340 71-395 (395) 72 protein:vir:1638 Length: 298 # 97.6 1.3E-05 8.1E-09 47.4 14.5 279 20-331 1-298 (298) 73 protein:vir:4830 Length: 397 # 97.6 2.8E-05 1.7E-08 45.6 16.3 286 1-336 79-397 (397) 74 protein:vir:93881 Length: 387 97.5 5.1E-05 3.2E-08 44.1 17.2 281 1-333 79-387 (387) 75 protein:vir:102119 Length: 404 97.5 3.7E-05 2.3E-08 44.9 16.3 296 1-333 76-404 (404) 76 protein:vir:9643 Length: 377 # 97.5 3.9E-05 2.4E-08 44.8 16.4 286 1-327 63-377 (377) 77 protein:vir:8420 Length: 477 # 97.5 2.5E-05 1.5E-08 45.8 15.2 299 1-333 115-477 (477) 78 protein:vir:3870 Length: 400 # 97.5 2.5E-05 1.5E-08 45.8 14.7 276 1-333 104-400 (400) 79 protein:vir:9574 Length: 300 # 97.4 2.7E-05 1.7E-08 45.6 14.9 283 20-332 1-300 (300) 80 protein:vir:80376 Length: 435 97.4 5.8E-05 3.6E-08 43.8 16.6 302 1-333 85-435 (435) 81 protein:vir:80684 Length: 315 97.4 5.1E-05 3.2E-08 44.1 16.2 285 20-335 1-315 (315) 82 protein:vir:9361 Length: 402 # 97.4 4.6E-05 2.9E-08 44.4 15.5 281 1-333 94-402 (402) 83 protein:vir:1268 Length: 397 # 97.3 3.9E-05 2.4E-08 44.8 14.5 279 1-332 83-397 (397) 84 protein:vir:9509 Length: 381 # 97.3 5E-05 3.1E-08 44.2 15.1 295 1-341 61-381 (381) 85 protein:vir:101291 Length: 381 97.3 5E-05 3.1E-08 44.2 15.1 295 1-341 61-381 (381) 86 protein:vir:96223 Length: 324 97.3 9.7E-05 6E-08 42.6 16.9 299 1-340 1-324 (324) 87 protein:vir:8187 Length: 311 # 97.3 3.3E-05 2.1E-08 45.1 13.7 282 20-333 1-311 (311) 88 protein:vir:3845 Length: 395 # 97.3 0.00011 7.1E-08 42.2 18.5 290 1-339 81-395 (395) 89 protein:vir:80128 Length: 466 97.3 2.1E-05 1.3E-08 46.3 12.2 311 1-341 116-462 (466) 90 protein:vir:99749 Length: 324 97.2 0.00012 7.5E-08 42.1 18.0 295 1-335 1-324 (324) 91 protein:vir:99920 Length: 311 97.2 5.4E-05 3.4E-08 44.0 14.3 285 20-332 1-311 (311) 92 protein:vir:4997 Length: 397 # 97.1 0.00015 9.6E-08 41.5 17.7 285 1-339 82-397 (397) 93 protein:vir:4856 Length: 293 # 97.1 0.00011 6.9E-08 42.3 14.6 262 20-334 1-293 (293) 94 protein:vir:2685 Length: 387 # 97.0 0.00021 1.3E-07 40.7 15.9 281 1-333 79-387 (387) 95 protein:vir:96978 Length: 387 97.0 0.00021 1.3E-07 40.7 15.9 281 1-333 79-387 (387) 96 protein:vir:94424 Length: 387 97.0 0.00021 1.3E-07 40.7 15.9 281 1-333 79-387 (387) 97 protein:vir:2430 Length: 318 # 96.9 0.0002 1.2E-07 40.9 14.9 294 5-337 1-318 (318) 98 protein:vir:78523 Length: 338 96.9 0.00026 1.6E-07 40.2 16.0 296 1-335 1-338 (338) 99 protein:vir:100632 Length: 381 96.8 0.00031 1.9E-07 39.8 15.6 297 1-341 37-381 (381) 100 protein:vir:962 Length: 397 # 96.7 0.00013 8.1E-08 41.9 12.3 274 1-332 108-397 (397) 101 protein:vir:1084 Length: 437 # 96.4 0.00064 4E-07 38.1 15.4 280 1-333 132-437 (437) 102 protein:vir:9759 Length: 303 # 96.2 0.00086 5.4E-07 37.4 15.6 282 24-332 1-303 (303) 103 protein:vir:78223 Length: 333 96.1 0.00094 5.9E-07 37.2 15.1 290 1-332 1-333 (333) 104 protein:vir:101607 Length: 379 96.1 0.001 6.3E-07 37.0 16.1 279 1-327 74-379 (379) 105 protein:vir:1433 Length: 435 # 96.0 0.0011 7E-07 36.8 16.3 299 1-333 88-435 (435) 106 protein:vir:78350 Length: 383 95.8 0.0014 8.5E-07 36.3 13.8 289 1-334 68-383 (383) 107 protein:vir:9309 Length: 324 # 95.8 0.0015 9.4E-07 36.0 17.0 296 5-340 1-324 (324) 108 protein:vir:96762 Length: 632 95.6 0.0018 1.1E-06 35.6 14.7 287 1-331 305-632 (632) 109 protein:vir:1383 Length: 421 # 95.5 0.0019 1.2E-06 35.5 16.7 288 1-341 88-402 (421) 110 protein:vir:2344 Length: 397 # 95.2 0.0026 1.6E-06 34.7 16.7 290 1-341 1-341 (397) 111 protein:vir:98635 Length: 377 95.0 0.003 1.9E-06 34.4 13.8 282 1-327 63-377 (377) 112 protein:vir:102873 Length: 392 94.4 0.0045 2.8E-06 33.4 19.2 282 1-334 85-392 (392) 113 protein:vir:107593 Length: 392 94.4 0.0045 2.8E-06 33.4 19.2 282 1-334 85-392 (392) 114 protein:vir:102082 Length: 392 94.4 0.0045 2.8E-06 33.4 19.2 282 1-334 85-392 (392) 115 protein:vir:105004 Length: 392 94.4 0.0045 2.8E-06 33.4 19.2 282 1-334 85-392 (392) 116 protein:vir:5739 Length: 366 # 94.1 0.0054 3.4E-06 33.0 15.3 300 1-336 30-366 (366) 117 protein:vir:105038 Length: 428 85.9 0.049 3.1E-05 27.8 16.2 298 1-336 83-428 (428) 118 protein:vir:9820 Length: 272 # 72.2 0.19 0.00012 24.6 16.1 257 20-335 1-272 (272) 119 protein:vir:3033 Length: 272 # 72.2 0.19 0.00012 24.6 16.1 257 20-335 1-272 (272) 120 protein:vir:93616 Length: 645 72.2 0.19 0.00012 24.6 15.4 292 1-332 286-645 (645) 121 protein:vir:1541 Length: 347 # 61.9 0.35 0.00021 23.1 10.9 285 1-329 1-347 (347) 122 protein:vir:103285 Length: 296 51.3 0.58 0.00036 21.9 14.2 276 1-328 1-296 (296) 123 protein:vir:94622 Length: 341 32.4 1.4 0.00089 19.7 12.0 283 1-334 1-341 (341) 124 protein:vir:8885 Length: 347 # 31.6 1.5 0.00092 19.6 10.9 290 1-333 1-347 (347) 125 protein:vir:80213 Length: 334 30.0 1.6 0.001 19.4 10.2 294 1-329 1-334 (334) 126 protein:vir:78935 Length: 335 28.1 1.8 0.0011 19.2 9.7 295 1-338 1-335 (335) 127 protein:vir:3364 Length: 347 # 22.2 2.5 0.0015 18.4 11.1 294 1-329 1-347 (347) No 1 >protein:vir:270 Length: 341 # NCBI annotation: putative major capsid protein # Family: family:all:201 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536650;genbank:gi:17975128;genbank:GeneID:929084 Probab=100.00 E-value=5.9e-188 Score=1047.05 Aligned_cols=341 Identities=100% Similarity=1.433 Sum_probs=339.8 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) ||++|+++||++|++|++++|++|||++++++|+|+|++||+|+++|||||+||++||+++|++++||+|++|++|+||| T Consensus 1 m~~~m~~~tr~~~~~y~~~~A~~ngv~~~~~~FsV~P~v~q~L~~~i~ess~FL~~Invv~V~e~~Ge~v~lg~~g~iag 80 (341) T protein:vir:27 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) T ss_pred CcccccHHHHHHHHHHHHHHHHHcCcccccceEeecHHHHHHHHHHHHhhHHhhhcCccccccceeeeEeecccccceee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhh Q lcl|Aclame:pro 81 RKAGGRFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSA 160 (341) Q Consensus 81 rt~t~r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~a 160 (341) ||+|+|++|.+++++++|+|+|||||+||+|++||+|||+|+||||++|+++++.+|||||||||||||+|+|++|||++ T Consensus 81 rtdt~R~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~r~~~~i~~~~ALD~i~IGfnGts~A~~Td~~a 160 (341) T protein:vir:27 81 RKAGGRFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSA 160 (341) T ss_pred ccCCCceecccccCCcceEEEEeeeeeeecHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhhhcccceeeccCCChhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHHh Q lcl|Aclame:pro 161 NPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYD 240 (341) Q Consensus 161 nPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~n 240 (341) ||+||||||||||++||++|+|||+++++.+|+||||+||||||+|++++|||||||++||||||||||||++|||||+| T Consensus 161 nPllqDVNkGWlQ~~Re~a~~rVl~~~~~~~g~~gdy~nLDAlV~D~~~~lI~~~~~~d~dLVvivG~dLla~k~~~l~n 240 (341) T protein:vir:27 161 NPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYD 240 (341) T ss_pred cccccccchhHHHHHHhhcccceeccceeeccCCCccccHHHHHHHHHhcccChHHhcCCCEEEEEchhhhhhhhhhhhc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceeccccceeeccchhee Q lcl|Aclame:pro 241 KADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTGAWKVTQWVCWK 320 (341) Q Consensus 241 ~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s~YvVEdyg~~~ 320 (341) ++++|||++|+|+|+|+||||||++|||||++++|||+|||||||||+|++||+++|||+|||||+|||+||||||||++ T Consensus 241 ~~~~ptE~~Aa~~i~k~iGGlpa~~~PffP~~~~lVT~L~NLsIY~Q~gs~RR~~~d~p~r~rie~yes~YvVEdyg~~~ 320 (341) T protein:vir:27 241 KADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTGAWKVTQWVCWK 320 (341) T ss_pred cCCCCHHHHHHHHHHHhhCCCeEEEccccCCCceEEeeccceEEEEecCcEEEEEEeccccccccchhhhheeehhhhhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeccccccCCcchhcccccCC Q lcl|Aclame:pro 321 RSPLTTQKKSTSALNHRSERN 341 (341) Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~ 341 (341) +.+|+++|+|++|+||||||| T Consensus 321 ~~~~~~vkl~~~~~~~~~~~~ 341 (341) T protein:vir:27 321 RSPLTTQKKSTSALNHRSERN 341 (341) T ss_pred hccccccccCccccccccccC Confidence 999999999999999999999 No 2 >protein:vir:78777 Length: 358 # NCBI annotation: putative major capsid protein # Family: family:all:201 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285647;genbank:gi:148727153;genbank:GeneID:5220125 Probab=100.00 E-value=1.7e-173 Score=967.81 Aligned_cols=341 Identities=48% Similarity=0.813 Sum_probs=320.8 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCch--hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeeccccccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVS--NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLY 78 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~--~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~i 78 (341) ||++|+++||++|++|++++|++|||+ +++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+| T Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~~~Fsv~p~v~q~L~~~i~ess~FL~~INvv~V~e~~Ge~v~lg~~g~i 80 (358) T protein:vir:78 1 MSQTLTVQAEQRLNKYCDALAKAYGIDISKLDKQFSVTGPVETTLRSALLASVEFLGLITCLDVDQIKGQVVQVGVGQLY 80 (358) T ss_pred CcccccHHHHHHHHHHHHHHHHHhCCChhHccceeeeChHHHHHHHHHHHHHHHHhhcCcccccccceeeEEeecCCccc Confidence 999999999999999999999999995 789999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCCh Q lcl|Aclame:pro 79 TGRKAGGRFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDP 158 (341) Q Consensus 79 agrt~t~r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~ 158 (341) ||||+|+|+.+..++++++|+|+|||||+||+|++||+|||.+..|||++||++++.+|+|||||||||||+|+|++||| T Consensus 81 agrt~tr~~~~~~~l~~~~Y~c~qTn~dt~i~Y~~lD~WA~f~~~~dF~~r~~~~i~~~~ALD~i~IGfNGts~A~~Td~ 160 (358) T protein:vir:78 81 TGRKKGGRFKGKVGVDGNTYELTETDSCASLDWATLCTWANAGSEGEFIKLVGEFVNKAFALDMLRVGWNGVSAADDTDP 160 (358) T ss_pred ceecCCCccccccccCCCccEEEEeceeeeccHHHHHHHHhCCChhHHHHHHHHHHHHHHhhccceecccceeeccCCCh Confidence 99999988888889999999999999999999999999999666669999999999999999999999999999999999 Q ss_pred hhccchhhhhhhHHHHHHHhhccccccccc----eeec--CCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHH Q lcl|Aclame:pro 159 SANPLGQDVNEGWIAFVKNRKASQVVDVDV----YFDE--TNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIG 232 (341) Q Consensus 159 ~anPllqDVNkGWlq~~Re~~~~~v~~~~~----~~~g--~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla 232 (341) ++|||||||||||||++|+++|+|||++++ +.+| ++|||+||||||+|++++|||||||++||||||||||||+ T Consensus 161 ~~nPllqDVN~GWlQ~~Re~a~~~v~~~~~~~~~i~ig~g~~Gdy~NLDalV~D~~~~lI~~~~~~d~dLVvivG~dLla 240 (358) T protein:vir:78 161 TANPLGQDVNKGWHQLAREWKGGSQIIKAAAGEKIYFDPDGKGEYKTLDEMASDLINTTIDPLFQQDPRLVVLVGTDLVA 240 (358) T ss_pred hhCcCccccchHHHHHHHhhchhhhhccccccCceeecCCCCCccccHHHHHHHHHhccCChHHhcCCCEEEEEchhhhh Confidence 999999999999999999999999998643 4444 5599999999999999999999999999999999999999 Q ss_pred HHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceecccc--- Q lcl|Aclame:pro 233 AAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTG--- 309 (341) Q Consensus 233 ~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s--- 309 (341) +|||||+|++++|||++|+|+|.|+||||||++|||||+++||||+|||||||||+|++||+++|||+|||||||+| T Consensus 241 ~k~~~l~n~~~~pTE~~Aa~~i~k~iGGlpa~~~PfFP~~~ilVT~L~NLsIY~Q~gs~RR~~~d~p~r~riE~y~s~Ne 320 (358) T protein:vir:78 241 AAQAKLYSEATKPSEQIAAQQLAKSIAGRKAYIPPFFPGKRMVVTTLDNLHCYTQRGTRKRKADDNQDSKSFDNQYWRME 320 (358) T ss_pred HHhhhHhhcCCCcHHHHHHHHHHHHhCCCeEEEccccCCCceEEeeccccEEEEecCcEEEEEEeccccccccchhhhcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999966 Q ss_pred ceeeccchheeeeccccccCC-cchhccccc--CC Q lcl|Aclame:pro 310 AWKVTQWVCWKRSPLTTQKKS-TSALNHRSE--RN 341 (341) Q Consensus 310 ~YvVEdyg~~~~~~~~~~~~~-~~a~~~~~~--~~ 341 (341) +||||||||++.+|...++++ +||-.+-.- .+ T Consensus 321 ~YvVEd~~~~a~iE~i~v~~~~~pa~~~~~~~~~~ 355 (358) T protein:vir:78 321 GYALGEHKAYGGFEEADIEIGADPAVLAVEAAAQA 355 (358) T ss_pred eeeeeccccEEEEeeeeeeeCCCCCccccCCcccc Confidence 999999999988887777654 455544321 11 No 3 >protein:vir:78186 Length: 337 # NCBI annotation: gp2, phage major capsid protein, P2 family # Family: family:all:201 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111152;genbank:gi:134288735;genbank:GeneID:4960646 Probab=100.00 E-value=2.4e-172 Score=961.47 Aligned_cols=323 Identities=32% Similarity=0.520 Sum_probs=311.1 Q ss_pred ccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAG 84 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t 84 (341) |+++||++|++|++++|++|||++++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+|||||+| T Consensus 1 M~~~tr~~~~~y~~~~A~~ngv~~~~~~FsV~P~v~q~L~~~i~ess~FL~~INvv~V~e~~Ge~v~lg~~g~iagrtdt 80 (337) T protein:vir:78 1 MRKETRQAYEKYAAQIAKLNDTGDVSKKFAVEPTVQQRLETKMQESSEFLKRINVLPVTELEGEKLGLSVSGPIASRTDT 80 (337) T ss_pred CChHHHHHHHHHHHHHHHhcChhhhcceeecChHHHHHHHHHHHHHHHHhccCCccccccceeeEEecccCcceeeeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred Cccccc----cCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhh Q lcl|Aclame:pro 85 GRFTKQ----VGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSA 160 (341) Q Consensus 85 ~r~~r~----~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~a 160 (341) +++.|. .++++++|+|+|||||+||+|++||+||| ||||++||++++.+|+|||||||||||+|+|++|||++ T Consensus 81 ~~~~R~~~~~~~l~~~~Y~c~qTn~dt~i~Y~~lD~WA~---~~dF~~r~~~~i~~~~ALD~i~IGfNGts~A~~Td~~~ 157 (337) T protein:vir:78 81 TKAARQPIDPTALDSNRYRCEKTDYDTAIPYRKLDMWAK---FADFQQRIRDVILNQGALDRIMIGWNGVKAAATTDRQA 157 (337) T ss_pred CCcccccccccccCCCccEEEEeceecccCHHHHHHHhc---ChhHHHHHHHHHHHHHhhccceecccceeeccCCChhh Confidence 877665 47999999999999999999999999999 89999999999999999999999999999999999999 Q ss_pred ccchhhhhhhHHHHHHHhhcccccccc-----ceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHH Q lcl|Aclame:pro 161 NPLGQDVNEGWIAFVKNRKASQVVDVD-----VYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQ 235 (341) Q Consensus 161 nPllqDVNkGWlq~~Re~~~~~v~~~~-----~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~ 235 (341) |||||||||||||++||++|+|||+++ ++++|+||||+||||||+|++++|||||||++||||||||||||++|| T Consensus 158 nPllqDVN~GWlQ~~Re~ap~rVl~~~~~~~~~i~iG~~gdy~NLDalV~d~~~~lI~~~~~~d~dLVvivG~dLladk~ 237 (337) T protein:vir:78 158 NPLLQDVNIGWLQQYRERAAQRVLHEGAKQAGKVLIGKAGDYENLDALVMDIVSSMIDPWFQEDTGLVVICGRELLHDKY 237 (337) T ss_pred CcCccccchHHHHHHHhcchhhhhccccccCCceeecCCCCcccHHHHHHHHHhccCChHHhcCCCEEEEEchhhhHHHH Confidence 999999999999999999999999975 578899999999999999999999999999999999999999999999 Q ss_pred hHHHhccChhHHHHHHHHH--HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceecccc---c Q lcl|Aclame:pro 236 AKLYDKADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTG---A 310 (341) Q Consensus 236 ~~l~n~~~~ptE~~a~~~i--~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s---~ 310 (341) |||+|++++|||++|+|+| +|+||||||++|||||+++||||+|||||||||+|++||+++|||+|||||+|+| + T Consensus 238 ~~l~n~~~~ptE~~Aa~~i~s~k~iGGl~a~~~PfFP~~~ilVT~L~NLsIY~Q~gs~RR~~~d~p~r~rie~y~s~Ne~ 317 (337) T protein:vir:78 238 FPIVNATQAPTERLAADLIVSQKRIGNLPAVRVPFFPKRALMVTKLSNLSIYYQEGARRRTLKEVPERDRIENYESSNDA 317 (337) T ss_pred HHHHhcCCCcHHHHHHHHHHHhhhhcCcceEEccccCCCceEEeechhcEEEEecCcEEEEEEeccccccccchhhccce Confidence 9999999999999999998 6899999999999999999999999999999999999999999999999999966 9 Q ss_pred eeeccchheeeeccccccCCcc Q lcl|Aclame:pro 311 WKVTQWVCWKRSPLTTQKKSTS 332 (341) Q Consensus 311 YvVEdyg~~~~~~~~~~~~~~~ 332 (341) ||||||||++.+| +++.+++ T Consensus 318 YvVEd~~~~a~iE--nI~~~~a 337 (337) T protein:vir:78 318 YVVEDFGCGCVAE--NIELAAA 337 (337) T ss_pred eeeeccccEEEEe--ceeecCC Confidence 9999999988887 4444443 No 4 >protein:vir:100331 Length: 342 # NCBI annotation: major capsid protein N # Family: family:all:201 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655472;genbank:gi:109289940;genbank:GeneID:4157374 Probab=100.00 E-value=3.1e-172 Score=960.87 Aligned_cols=324 Identities=24% Similarity=0.403 Sum_probs=314.1 Q ss_pred ccHHHHHHHHHHHHHHHHhhCch----hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVS----NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~----~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) |+++||++|++|++++|++|||+ +++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+||| T Consensus 1 M~~~tr~~~~~y~~~~A~~ngv~~~~~~~~~~FsV~P~v~q~L~~~i~ess~FL~~INvv~V~e~~Ge~i~lg~~g~iag 80 (342) T protein:vir:10 1 MKDLTLEKYNAYLARQAELNNLPFNALATGIKFTVQPSVQQKLYEKVRESSDFLKSISFVFVDEQTGETLGLDSAHTVAS 80 (342) T ss_pred CChHHHHHHHHHHHHHHHHhCCChhHccccceeecChHHHHHHHHHHHHHHHHhccCcccccccceeeEEecccCccccc Confidence 99999999999999999999998 78899999999999999999999999999999999999999999999999999 Q ss_pred CCCC----Ccccccc-CCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcccccccc Q lcl|Aclame:pro 81 RKAG----GRFTKQV-GVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEAD 155 (341) Q Consensus 81 rt~t----~r~~r~~-~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~ 155 (341) ||+| +|+++.+ ++++++|+|+|||||+||+|++||+||| ||||++||++++.+|+|||||||||||+|+|++ T Consensus 81 rtdT~~~~~R~~~~~~~l~~~~Y~c~qTn~dt~i~Y~~lD~WA~---~~dF~~r~~~~i~~~~ALD~i~IGfNGts~A~~ 157 (342) T protein:vir:10 81 TTDTSGDGERKTTSIAKLVKQTYHCQQINFDTHINYKQLDMWAK---FPDFQQKVANVAAKQRKRDLIMIGFNGTSRAAT 157 (342) T ss_pred ccccCCCCCcccccccccCCCccEEEEeeecccccHHHHHHHhc---ChhHHHHHHHHHHHHHhhccceecccceeeccC Confidence 9986 4677764 8999999999999999999999999999 899999999999999999999999999999999 Q ss_pred CChhhccchhhhhhhHHHHHHHhhcccccccc----ceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHH Q lcl|Aclame:pro 156 TDPSANPLGQDVNEGWIAFVKNRKASQVVDVD----VYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLI 231 (341) Q Consensus 156 TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~----~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLl 231 (341) |||++|||||||||||||++|+++|+|||+++ ++++|+||||+||||||+|++++|||||||++|||||||||||| T Consensus 158 Td~~~nPllqDVN~GWlQ~~Re~ap~rv~~~~~~~~~i~iG~~gdy~NLDalV~D~~~~lI~~~~~~d~dLVvivG~dLl 237 (342) T protein:vir:10 158 SDRNSNPLLQDVAKGWLQKMREDAKERVMNGESTDNQVLVGKGQEYANLDALVMDATEELIDEWHRDDTDLVVITGRKLL 237 (342) T ss_pred CChhhCcCccccchHHHHHHHhhhhhhhcccceeccceeecCCCCcccHHHHHHHHHhccCChHHhcCCCEEEEEchhhh Confidence 99999999999999999999999999999875 46789999999999999999999999999999999999999999 Q ss_pred HHHHhHHHhccChhHHHHHHHHH--HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceecccc Q lcl|Aclame:pro 232 GAAQAKLYDKADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTG 309 (341) Q Consensus 232 a~~~~~l~n~~~~ptE~~a~~~i--~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s 309 (341) ++|||||+|++++|||++|++++ +|+||||||++|||||+++||||+|||||||||+|++||+++|||+|||||+|+| T Consensus 238 adk~~~l~n~~~~ptE~~Aa~~i~s~k~iGGl~a~~~PfFP~~~ilVT~L~NLsIY~Q~gs~RR~~~d~p~r~rie~y~s 317 (342) T protein:vir:10 238 ADKYFPIVNQQNAPTEELAADIVISQKRIGGLKAVRVPFFPANAILITKLENLAIYVQEGTTRKHIENVPKKDRIETYES 317 (342) T ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhhhcCceeEEccccCCCceEEeeccccEEEEecCcEEEEEEeccccccccchhh Confidence 99999999999999999999998 6899999999999999999999999999999999999999999999999999966 Q ss_pred ---ceeeccchheeeeccccccCCc Q lcl|Aclame:pro 310 ---AWKVTQWVCWKRSPLTTQKKST 331 (341) Q Consensus 310 ---~YvVEdyg~~~~~~~~~~~~~~ 331 (341) +||||||||++.+|...+++|+ T Consensus 318 ~Ne~YvVEd~~~~a~iE~i~i~~~~ 342 (342) T protein:vir:10 318 ENIDYVVEDYGCAALIENITLKDKE 342 (342) T ss_pred hccceeeeccccEEEeecceecCCC Confidence 9999999999999988888888 No 5 >protein:vir:79157 Length: 339 # NCBI annotation: P2 family phage major capsid protein # Family: family:all:201 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165257;genbank:gi:145708082;genbank:GeneID:5247168 Probab=100.00 E-value=2.3e-172 Score=961.53 Aligned_cols=324 Identities=30% Similarity=0.501 Sum_probs=311.4 Q ss_pred ccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAG 84 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t 84 (341) |+++||++|++|++++|++|||++++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|++||||+| T Consensus 1 M~~~tr~~~~~y~~~~A~~ngv~~~~~~FsV~P~v~q~L~~~i~ess~FL~~INvv~V~e~~Ge~v~lg~~g~iagrtdt 80 (339) T protein:vir:79 1 MRNDTRRLFAAYKAAIAKLNGVERVDEKFSVAPSVQQKLETKVQESSDFLKSINFYGVPEQEGEKIGLGVSGPVASTTDT 80 (339) T ss_pred CChHHHHHHHHHHHHHHHHhCcccccceeeecHHHHHHHHHHHHHHHHHhccCcccccccceeeEEeeccCcceeecccC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988 Q ss_pred C---cccccc-CCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhh Q lcl|Aclame:pro 85 G---RFTKQV-GVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSA 160 (341) Q Consensus 85 ~---r~~r~~-~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~a 160 (341) . |+|+++ ++++++|+|+|||||+||+|++||+||| ||||++||++++.+|+|||||||||||+|+|++|||++ T Consensus 81 ~~~~R~~~~~~~l~~~~Y~c~qTn~dt~i~Y~~lD~WA~---~~dF~~r~~~~i~~~~ALD~i~IGfNGts~A~~Td~~~ 157 (339) T protein:vir:79 81 TQQDRETSDISTMDGRRYRCEQTNSDTHITYQKLDAWAK---FADFQTRIRDAIIKRQALDRIMIGFNGVSRAATSDRVA 157 (339) T ss_pred CCCCcccccccccCCCccEEEEeeeeceecHHHHHHHhc---ChhHHHHHHHHHHHHHhhccceecccceeeecCCChhh Confidence 4 667765 8999999999999999999999999999 89999999999999999999999999999999999999 Q ss_pred ccchhhhhhhHHHHHHHhhccccccccc-----eee-cCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHH Q lcl|Aclame:pro 161 NPLGQDVNEGWIAFVKNRKASQVVDVDV-----YFD-ETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAA 234 (341) Q Consensus 161 nPllqDVNkGWlq~~Re~~~~~v~~~~~-----~~~-g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~ 234 (341) |||||||||||||++||++|+|||++|+ +.+ |+||||+||||||+|++++|||||||++||||||||||||++| T Consensus 158 nPllqDVN~GWlQ~~Re~ap~rV~~~g~~~s~~i~~~G~ggdy~NLDalV~d~~~~lId~~~~~d~dLVvivG~dLla~k 237 (339) T protein:vir:79 158 NPMLQDVNKGWLQNLREQAPQRVMKEGKAAAGKITVGGAGADYGNLDALVYDITNHLVEPWYAEDPDLVVVCGRNLLSDK 237 (339) T ss_pred CcCccccchhHHHHHHhhhhhhhhccceeccceeEeccCCCCcccHHHHHHHHHhccCChHHhcCCCEEEEEchhhhhhH Confidence 9999999999999999999999998763 334 9999999999999999999999999999999999999999999 Q ss_pred HhHHHhccChhHHHHHHHHH--HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceecccc--- Q lcl|Aclame:pro 235 QAKLYDKADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTG--- 309 (341) Q Consensus 235 ~~~l~n~~~~ptE~~a~~~i--~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s--- 309 (341) ||||+|++++|||++|+|+| +|+||||||++|||||+++||||+|||||||||+|++||+++|||+|||||+|+| T Consensus 238 ~~~l~n~~~~ptE~~Aa~~i~s~k~iGGl~a~~~PfFP~~~llVT~L~NLsIY~Q~gs~RR~~~d~p~r~rie~y~s~Ne 317 (339) T protein:vir:79 238 YFPLVNRDRDPVQQIAADLIISQKRIGNLPAIRVPYFPANGLLVTRLDNLSIYYQEGGRRRTILDNAKRDRIENYESSND 317 (339) T ss_pred hhhHhhcCCChHHHHHHHHHHHhhhhCCceeEEccccCCCceEEeechhcEEEEecCcEEEEEEeccccccccchhhccc Confidence 99999999999999999998 6899999999999999999999999999999999999999999999999999966 Q ss_pred ceeeccchheeeeccccccCCcch Q lcl|Aclame:pro 310 AWKVTQWVCWKRSPLTTQKKSTSA 333 (341) Q Consensus 310 ~YvVEdyg~~~~~~~~~~~~~~~a 333 (341) +||||||||++.+| +++.+.+| T Consensus 318 ~YvVEd~~~~a~iE--ni~~~~aa 339 (339) T protein:vir:79 318 AYVIEDLACAAMAE--NIALAAAA 339 (339) T ss_pred eeeeeccccEEEee--eeecccCC Confidence 99999999988877 56666666 No 6 >protein:vir:5694 Length: 357 # NCBI annotation: gpN # Family: family:all:201 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839853;genbank:gi:30065708;genbank:GeneID:1260602 Probab=100.00 E-value=8.8e-172 Score=958.37 Aligned_cols=334 Identities=25% Similarity=0.423 Sum_probs=313.4 Q ss_pred ccHHHHHHHHHHHHHHHHhhCch--hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVS--NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRK 82 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~--~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt 82 (341) |+++||++|++|++++|++|||+ +++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+||||| T Consensus 1 M~~~tr~~~~~y~~~~A~~ngv~~~d~~~~FsV~P~v~q~L~~~i~ess~FL~~INvv~V~e~~Ge~i~lg~~g~iagrt 80 (357) T protein:vir:56 1 MRQETRFKFNAYLSRVAELNGIDAGDVSKKFTVEPSVTQTLMNTMQESSDFLTRINIVPVSEMKGEKIGIGVTGSIASTT 80 (357) T ss_pred CChHHHHHHHHHHHHHHHHhCCChHHhcceeecCHHHHHHHHHHHHHHHHHhccCCccccccceeeEEecccCccccccc Confidence 99999999999999999999997 6789999999999999999999999999999999999999999999999999999 Q ss_pred CC----Ccccccc-CCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 83 AG----GRFTKQV-GVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 83 ~t----~r~~r~~-~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) +| +|+|+++ ++++++|+|+|||||+||+|++||+||| ||||++||++++.+|+|||||||||||+|+|++|| T Consensus 81 dT~~~~~R~~~~~~~l~~~~Y~c~qTn~dt~i~Y~~lD~WA~---~~dF~~r~~~~i~~~~ALD~i~IGfNGts~A~~Td 157 (357) T protein:vir:56 81 DTAGGTERQPKDFSKLASNKYECDQINFDFYIRYKTLDLWAR---YQDFQLRVRNAIIKRQSLDFIMAGFNGVKRAETSD 157 (357) T ss_pred cCCCCCCcccccccccCCCccEEEEeeecccccHHHHHHHhc---ChhHHHHHHHHHHHHHhhccceecccceeeeccCC Confidence 87 4677775 8999999999999999999999999999 89999999999999999999999999999999999 Q ss_pred hhhccchhhhhhhHHHHHHHhhccccccc-----c-----ceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeC Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDV-----D-----VYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVG 227 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~-----~-----~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG 227 (341) |++|||||||||||||++|+++|+|||++ | +|++|+||||+||||||+|++++|||||||++|||||||| T Consensus 158 ~~~nPllqDVN~GWlQ~~Re~ap~rVm~~~~~~~g~~~~~~i~~G~~gdy~NLDalV~D~~~~lI~~~~~~d~dLVvivG 237 (357) T protein:vir:56 158 RSSNPMLQDVAVGWLQKYRNEAPARVMSKVTDEEGHTTSEVIRVGKGGDYASLDALVMDATNNLIEPWYQEDPDLVVIVG 237 (357) T ss_pred hhhCcCccccchhHHHHHHhhchhhhhccccccCCccccceeeecCCCCcccHHHHHHHHHhccCChHHhcCCCEEEEEc Confidence 99999999999999999999999999985 2 3778999999999999999999999999999999999999 Q ss_pred hHHHHHHHhHHHhccChhHHHHHHHHH--HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccccccee Q lcl|Aclame:pro 228 SGLIGAAQAKLYDKADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSK 305 (341) Q Consensus 228 ~dLla~~~~~l~n~~~~ptE~~a~~~i--~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve 305 (341) ||||++|||||+|++++|||++|+++| +|+||||||++|||||+++||||+|||||||||+|++||+++|||+||||| T Consensus 238 ~dLla~k~~~l~n~~~~pTE~~Aa~~i~s~k~iGGl~a~~~PfFP~~~llVT~L~NLsIY~Q~gs~RR~~~d~p~r~riE 317 (357) T protein:vir:56 238 RQLLADKYFPIVNKEQDNSEMLAADVIISQKRIGNLPAVRVPYFPADAMLITKLENLSIYYMDDSHRRVIEENPKLDRVE 317 (357) T ss_pred hhhhhhhhhhHhhccCChHHHHHHHHHHHhhhhCCceeEEccccCCCceEEeeccccEEEEecCcEEEEEEecccccccc Confidence 999999999999999999999999998 689999999999999999999999999999999999999999999999999 Q ss_pred cccc---ceeeccchheeeeccccccCCcchhcccccCC Q lcl|Aclame:pro 306 THTG---AWKVTQWVCWKRSPLTTQKKSTSALNHRSERN 341 (341) Q Consensus 306 ~y~s---~YvVEdyg~~~~~~~~~~~~~~~a~~~~~~~~ 341 (341) ||+| +||||||||++.+|...++.++++.-.-.+-. T Consensus 318 ~y~s~Ne~YvVEd~~~~a~iE~i~i~~~~~~~~~~~~~~ 356 (357) T protein:vir:56 318 NYESMNIDYVVEDYAAGCLVEKIKVGDFSTPAKATEEPG 356 (357) T ss_pred chhhhcceeeeeccccEEEeeeeeeccCCCCcccCCCCC Confidence 9966 99999999988888666665533222222222 No 7 >protein:vir:2016 Length: 357 # NCBI annotation: gpN # Family: family:all:201 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046760;genbank:gi:9630331;genbank:GeneID:1261541 Probab=100.00 E-value=1.9e-171 Score=956.50 Aligned_cols=333 Identities=26% Similarity=0.427 Sum_probs=311.2 Q ss_pred ccHHHHHHHHHHHHHHHHhhCch--hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVS--NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRK 82 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~--~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt 82 (341) |+++||++|++|++++|++|||+ +++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+||||| T Consensus 1 M~~~tr~~~~~y~~~~A~~ngv~~~d~~~~FsV~P~v~q~L~~~i~ess~FL~~INvv~V~e~~Ge~i~lg~~g~iagrt 80 (357) T protein:vir:20 1 MRQETRFKFNAYLSRVAELNGIDAGDVSKKFTVEPSVTQTLMNTMQESSDFLTRINIVPVSEMKGEKIGIGVTGSIASTT 80 (357) T ss_pred CChHHHHHHHHHHHHHHHHhCCChHHhcceeecCHHHHHHHHHHHHHHHHHhccCCccccccceeeEEecccCccccccc Confidence 99999999999999999999997 6789999999999999999999999999999999999999999999999999999 Q ss_pred CC----Ccccccc-CCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 83 AG----GRFTKQV-GVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 83 ~t----~r~~r~~-~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) +| +|+|+++ ++++++|+|+|||||+||+|++||+||| ||||++||++++.+|+|||||||||||+|+|++|| T Consensus 81 dT~~~~~R~~~~~~~l~~~~Y~c~qTn~dt~i~Y~~lD~WA~---~~dF~~r~~~~i~~~~ALD~i~IGfNGts~A~~Td 157 (357) T protein:vir:20 81 DTAGGTERQPKDFSKLASNKYECDQINFDFYIRYKTLDLWAR---YQDFQLRIRNAIIKRQSLDFIMAGFNGVKRAETSD 157 (357) T ss_pred cCCCCCCcccccccccCCCccEEEEeeecccccHHHHHHHhc---ChhHHHHHHHHHHHHHhhccceecccceeeeccCC Confidence 87 4777775 8999999999999999999999999999 89999999999999999999999999999999999 Q ss_pred hhhccchhhhhhhHHHHHHHhhccccccc-----c-----ceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeC Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDV-----D-----VYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVG 227 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~-----~-----~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG 227 (341) |++|||||||||||||++|+++|+|||++ | +|++|+||||+||||||+|++++|||||||++|||||||| T Consensus 158 ~~~nPllqDVN~GWlQ~~Re~ap~rVm~~~~~~~g~~~~~~i~~G~~gdy~NLDalV~D~~~~lI~~~~~~d~dLVvivG 237 (357) T protein:vir:20 158 RSSNPMLQDVAVGWLQKYRNEAPARVMSKVTDEEGRTTSEVIRVGKGGDYASLDALVMDATNNLIEPWYQEDPDLVVIVG 237 (357) T ss_pred hhhCcCccccchhHHHHHHhhchhhhhccccccccccccceeeecCCCCcccHHHHHHHHHhccCChHHhcCCCEEEEEc Confidence 99999999999999999999999999975 2 3678999999999999999999999999999999999999 Q ss_pred hHHHHHHHhHHHhccChhHHHHHHHHH--HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccccccee Q lcl|Aclame:pro 228 SGLIGAAQAKLYDKADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSK 305 (341) Q Consensus 228 ~dLla~~~~~l~n~~~~ptE~~a~~~i--~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve 305 (341) ||||++|||||+|++++|||++|+++| +|+||||||++|||||+++||||+|||||||||+|++||+++|||+||||| T Consensus 238 ~dLla~k~~~l~n~~~~ptE~~Aa~~i~s~k~iGGl~a~~~PfFP~~~ilVT~L~NLsIY~Q~gs~RR~~~d~p~r~riE 317 (357) T protein:vir:20 238 RQLLADKYFPIVNKEQDNSEMLAADVIISQKRIGNLPAVRVPYFPADAMLITKLENLSIYYMDDSHRRVIEENPKLDRVE 317 (357) T ss_pred hhhhhhhhhhHhhccCChHHHHHHHHHHHhhhhCCceeEEccccCCCceEEeeccccEEEEecCcEEEEEEecccccccc Confidence 999999999999999999999999998 689999999999999999999999999999999999999999999999999 Q ss_pred cccc---ceeeccchheeeeccccccCC-cchhcccccCC Q lcl|Aclame:pro 306 THTG---AWKVTQWVCWKRSPLTTQKKS-TSALNHRSERN 341 (341) Q Consensus 306 ~y~s---~YvVEdyg~~~~~~~~~~~~~-~~a~~~~~~~~ 341 (341) ||+| +||||||||++.+|...++.+ +||-.. .|-. T Consensus 318 ~y~s~Ne~YvVEd~~~~a~iE~i~~~~~~~p~~~~-~~~~ 356 (357) T protein:vir:20 318 NYESMNIDYVVEDYAAGCLVEKIKVGDFSTPAKAT-AEPG 356 (357) T ss_pred chhhhcceeeeeccccEEEeeeeeeccccCCccCC-CCCC Confidence 9966 999999998888775554433 222211 1222 No 8 >protein:vir:79171 Length: 337 # NCBI annotation: gp2, phage major capsid protein, P2 family # Family: family:all:201 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111033;genbank:gi:134288740;genbank:GeneID:4960690 Probab=100.00 E-value=2.8e-171 Score=955.65 Aligned_cols=323 Identities=31% Similarity=0.518 Sum_probs=311.0 Q ss_pred ccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAG 84 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t 84 (341) |+++||++|++|++++|++|||++++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+|||||+| T Consensus 1 M~~~tr~~~~~y~~~~A~~ngv~~~~~~FsV~P~v~q~L~~~i~ess~FL~~Invv~V~e~~Ge~v~lg~~g~iagrt~t 80 (337) T protein:vir:79 1 MRKETRQAYEKYAAQIAKLNDTGDVSKKFAVEPTVQQRLETKMQESSEFLKRINVLPVTELEGEKLGLSVSGPIASRTDT 80 (337) T ss_pred CChHHHHHHHHHHHHHHHhcChhhhcceeeecHHHHHHHHHHHHHHHHhhccCceeccccceeeEEeeccCcceeeeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred Cccccc----cCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhh Q lcl|Aclame:pro 85 GRFTKQ----VGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSA 160 (341) Q Consensus 85 ~r~~r~----~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~a 160 (341) +++.|. .++++++|+|+|||||+||+|++||+||| ||||++|+++++.+|+|||||||||||+|+|++|||++ T Consensus 81 ~~~~R~~~~~~~l~~~~Y~c~qtn~dt~i~y~~LD~WA~---~~dF~~r~~~~i~~~~ALD~i~IGfnG~s~A~~Td~~~ 157 (337) T protein:vir:79 81 TKAARQPIDPTALDSNRYRCEKTDYDTAIPYRKLDAWAK---FADFQQRIRDVILNQGALDRIMIGWNGVKAAATTDRQA 157 (337) T ss_pred CCCccccccccccCCCccEEEEeeeeeeccHHHHHHHhc---ChhHHHHHHHHHHHHHhhchhhhcccceeeccCCChhh Confidence 877665 48999999999999999999999999999 89999999999999999999999999999999999999 Q ss_pred ccchhhhhhhHHHHHHHhhcccccccc-----ceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHH Q lcl|Aclame:pro 161 NPLGQDVNEGWIAFVKNRKASQVVDVD-----VYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQ 235 (341) Q Consensus 161 nPllqDVNkGWlq~~Re~~~~~v~~~~-----~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~ 235 (341) ||+||||||||||++|+++|+|||+++ ++++|+||||+||||||+|++++|||||||++||||||||||||++|| T Consensus 158 nPllqDVNkGWlQ~~Re~ap~rV~~~~~~~~~~i~iG~~gdy~nLDalV~D~~~~lI~~~~~~d~~LVvivG~dLladk~ 237 (337) T protein:vir:79 158 NPLLQDVNIGWLQQYRERAAQRVLHEGAKQAGKVLVGKAGDYENLDALVMDIVSSMIDPWFQEDTGLVAICGRELLHDKY 237 (337) T ss_pred CcCccccchhHHHHHHhcchhhhhccccccCcceeecCCCCcccHHHHHHHHHhccCChHHhcCCCEEEEEchhhhhHHh Confidence 999999999999999999999999874 578899999999999999999999999999999999999999999999 Q ss_pred hHHHhccChhHHHHHHHHH--HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceecccc---c Q lcl|Aclame:pro 236 AKLYDKADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTG---A 310 (341) Q Consensus 236 ~~l~n~~~~ptE~~a~~~i--~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s---~ 310 (341) +||+|++++|||++|++++ +|+||||||++|||||++++|||+|||||||||+|++||+++|||+|||||+|+| + T Consensus 238 ~~l~n~~~~ptE~~Aa~~i~s~k~iGGlpa~~~PffP~~~~lVT~L~NLsIY~Q~gs~RR~~~d~p~r~rie~y~s~Ne~ 317 (337) T protein:vir:79 238 FPIVNATQAPTERLAADLIVSQKRIGNLPAVRVPFFPKRALMVTKLSNLSIYYQEGARRRTLKEVPERDRIENYESSNDA 317 (337) T ss_pred hHHhccCCCcHHHHHHHHHHHhhhhCCceeEEccccCCCceEEeechhcEEEEecCcEEEEEEEccccccccchhhccce Confidence 9999999999999999998 6899999999999999999999999999999999999999999999999999966 9 Q ss_pred eeeccchheeeeccccccCCcc Q lcl|Aclame:pro 311 WKVTQWVCWKRSPLTTQKKSTS 332 (341) Q Consensus 311 YvVEdyg~~~~~~~~~~~~~~~ 332 (341) ||||||||++.+| +++.+.+ T Consensus 318 YvVEd~~~~a~ie--nI~~~~a 337 (337) T protein:vir:79 318 YVVEDFGCGCVAE--NIELAAA 337 (337) T ss_pred eeeeccccEEEEe--ceeecCC Confidence 9999999988887 3333433 No 9 >protein:vir:6061 Length: 357 # NCBI annotation: gpN # Family: family:all:201 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878202;genbank:gi:33438901;genbank:GeneID:1457736 Probab=100.00 E-value=2.9e-171 Score=955.50 Aligned_cols=333 Identities=26% Similarity=0.419 Sum_probs=310.1 Q ss_pred ccHHHHHHHHHHHHHHHHhhCch--hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVS--NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRK 82 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~--~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt 82 (341) |+++||++|++|++++|++|||+ +++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+||||| T Consensus 1 M~~~tr~~~~~y~~~~A~~ngv~~~d~~~~FsV~P~v~q~L~~~i~ess~FL~~INvv~V~e~~Ge~i~lg~~g~iagrt 80 (357) T protein:vir:60 1 MRQETRFKFNAYLSRVAELNGIDAGDVSKKFTVEPSVTQTLMNTMQESSDFLTRINIVPVSEMKGEKIGIGVTGSIASTT 80 (357) T ss_pred CChHHHHHHHHHHHHHHHHhCCChHHhcceeecCHHHHHHHHHHHHHHHHHhccCCccccccceeeEEecccCccccccc Confidence 99999999999999999999997 6789999999999999999999999999999999999999999999999999999 Q ss_pred CC----Ccccccc-CCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 83 AG----GRFTKQV-GVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 83 ~t----~r~~r~~-~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) +| +|+|+++ ++++++|+|+|||||+||+|++||+||| ||||++||++++.+|+|||||||||||+|+|++|| T Consensus 81 dT~~~~~R~~~~~~~l~~~~Y~c~qTn~dt~i~Y~~lD~WA~---~~dF~~r~~~~i~~~~ALD~i~IGfNGts~A~~Td 157 (357) T protein:vir:60 81 DTAGGTERQPKDFSKLASNKYECDQINFDFYIRYKTLDLWAR---YQDFQLRVRNAIIKRQSLDLIMAGFNGVRRAETSD 157 (357) T ss_pred ccCCCCCcccccccccCCCccEEEEeeeeccccHHHHHHHhc---ChhHHHHHHHHHHHHHhhccceecccceeeeccCC Confidence 87 4777774 8999999999999999999999999999 89999999999999999999999999999999999 Q ss_pred hhhccchhhhhhhHHHHHHHhhccccccc-----c-----ceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeC Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDV-----D-----VYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVG 227 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~-----~-----~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG 227 (341) |++|||||||||||||++|+++|+|||++ | +|++|+||||+||||||+|++++|||||||++|||||||| T Consensus 158 ~~~nPllqDVN~GWlQ~~Re~ap~rVm~~~~~~~g~~~~~~i~~G~~gdy~NLDalV~D~~~~lI~~~~~~d~dLVvivG 237 (357) T protein:vir:60 158 RSSNQMLQDVAVGWLQKYRNEAPARVMSKVTDEEGHTTSEVIRVGKGGDYASLDALVMDATNNLIEPWYQEDPDLVVIVG 237 (357) T ss_pred hhhCcCccccchhHHHHHHhhchhhhhccccccCCccccceeeecCCCCcccHHHHHHHHHhccCChHHhcCCCEEEEEc Confidence 99999999999999999999999999975 2 3778999999999999999999999999999999999999 Q ss_pred hHHHHHHHhHHHhccChhHHHHHHHHH--HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccccccee Q lcl|Aclame:pro 228 SGLIGAAQAKLYDKADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSK 305 (341) Q Consensus 228 ~dLla~~~~~l~n~~~~ptE~~a~~~i--~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve 305 (341) ||||++|||||+|++++|||++|+|+| +|+||||||++|||||+++||||+|||||||||+|++||+++|||+||||| T Consensus 238 ~dLla~k~~~l~n~~~~pTE~~Aa~~i~s~k~iGGl~a~~~PfFP~~~llVT~L~NLsIY~Q~gs~RR~~~d~p~r~riE 317 (357) T protein:vir:60 238 RQLLADKYFPIVNREQDNSEMLAADVIISQKRIGNLPAVRVPYFPADAMLITKLENLSIYYMDDSHRRVIEENPKLDRVE 317 (357) T ss_pred hhhhhHHhhhHhhcCCChHHHHHHHHHHHhhhhcCcceEEccccCCCceEEeeccccEEEEecCcEEEEEEecccccccc Confidence 999999999999999999999999998 789999999999999999999999999999999999999999999999999 Q ss_pred cccc---ceeeccchheeeeccccccCC-cchhcccccCC Q lcl|Aclame:pro 306 THTG---AWKVTQWVCWKRSPLTTQKKS-TSALNHRSERN 341 (341) Q Consensus 306 ~y~s---~YvVEdyg~~~~~~~~~~~~~-~~a~~~~~~~~ 341 (341) ||+| +||||||||++.+|...++.+ +||-- -.+-. T Consensus 318 ~y~s~Ne~YvVEd~~~~a~iE~i~~~~~~~pa~~-~~~~~ 356 (357) T protein:vir:60 318 NYESMNIDYVVEDYAAGCLVEKIKVGDFSTPAKA-TAEPG 356 (357) T ss_pred chhhhcceeeeeccccEEEeeeeeeccCcccccC-CCCCC Confidence 9966 999999998877774444332 22211 11111 No 10 >protein:vir:104011 Length: 337 # NCBI annotation: P2 family phage major capsid protein # Family: family:all:201 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293748;genbank:gi:72537718;genbank:GeneID:3608142 Probab=100.00 E-value=3.1e-171 Score=955.39 Aligned_cols=323 Identities=32% Similarity=0.521 Sum_probs=311.2 Q ss_pred ccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAG 84 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t 84 (341) |+++||++|++|++++|++|||++++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+|||||+| T Consensus 1 M~~~tr~~~~~y~~~~A~~ngv~~~~~~FsV~P~v~q~L~~~i~ess~FL~~Invv~V~e~~Ge~v~lg~~g~iagrt~t 80 (337) T protein:vir:10 1 MRKETRQAYEKYAAQIAKLNDTGDVSKKFAVEPTVQQRLETKMQESSEFLKRINVLPVTELEGEKLGLSVSGPIASRTDT 80 (337) T ss_pred CChHHHHHHHHHHHHHHHhcChhhhcceeeecHHHHHHHHHHHHHHHHhhccCceeccccceeeEEeeccCcceeeeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred Cccccc----cCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhh Q lcl|Aclame:pro 85 GRFTKQ----VGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSA 160 (341) Q Consensus 85 ~r~~r~----~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~a 160 (341) +++.|. .++++++|+|+|||||+||+|++||+||| ||||++|+++++.+|+|||||||||||+|+|++|||++ T Consensus 81 ~~~~R~~~~~~~l~~~~Y~c~qtn~dt~i~y~~LD~WA~---~~dF~~r~~~~i~~~~ALD~i~IGfnG~s~A~~Td~~~ 157 (337) T protein:vir:10 81 TKAARQPIDPTALDSNRYRCEKTDYDTAIPYRKLDMWAK---FADFQQRIRDVILNQGALDRIMIGWNGVKAAATTDRQA 157 (337) T ss_pred CCCccccccccccCCCccEEEEeeeeeeccHHHHHHHhc---ChhHHHHHHHHHHHHHhhchhhhcccceeeccCCChhh Confidence 877665 48999999999999999999999999999 89999999999999999999999999999999999999 Q ss_pred ccchhhhhhhHHHHHHHhhcccccccc-----ceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHH Q lcl|Aclame:pro 161 NPLGQDVNEGWIAFVKNRKASQVVDVD-----VYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQ 235 (341) Q Consensus 161 nPllqDVNkGWlq~~Re~~~~~v~~~~-----~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~ 235 (341) ||+||||||||||++|+++|+|||+++ ++++|+||||+||||||+|++++|||||||++||||||||||||++|| T Consensus 158 nPllqDVNkGWlQ~~Re~ap~rV~~~~~~~~~~i~iG~~gdy~nLDalV~D~~~~lI~~~~~~d~~LVvivG~dLladk~ 237 (337) T protein:vir:10 158 NPLLQDVNIGWLQQYRERAAQRVLHEGAKQAGKVLVGKAGDYENLDALVMDIVSSMIDPWFQEDTGLVVICGRELLHDKY 237 (337) T ss_pred CcCccccchhHHHHHHhcchhhhhccccccCcceeecCCCCcccHHHHHHHHHhccCChHHhcCCCEEEEEchhhhhHHh Confidence 999999999999999999999999975 578899999999999999999999999999999999999999999999 Q ss_pred hHHHhccChhHHHHHHHHH--HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceecccc---c Q lcl|Aclame:pro 236 AKLYDKADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTG---A 310 (341) Q Consensus 236 ~~l~n~~~~ptE~~a~~~i--~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s---~ 310 (341) +||+|++++|||++|++++ +|+||||||++|||||++++|||+|||||||||+|++||+++|||+|||||+|+| + T Consensus 238 ~~l~n~~~~ptE~~Aa~~i~s~k~iGGlpa~~~PffP~~~~lVT~L~NLsIY~Q~gs~RR~~~d~p~r~rie~y~s~Ne~ 317 (337) T protein:vir:10 238 FPIVNATQAPTERLAADLIVSQKRIGNLPAVRVPFFPKRALMVTKLSNLSIYYQEGARRRTLKEVPERDRIENYESSNDA 317 (337) T ss_pred hHHhccCCCcHHHHHHHHHHHhhhhCCceeEEccccCCCceEEeechhcEEEEecCcEEEEEEEccccccccchhhccce Confidence 9999999999999999998 6899999999999999999999999999999999999999999999999999966 9 Q ss_pred eeeccchheeeeccccccCCcc Q lcl|Aclame:pro 311 WKVTQWVCWKRSPLTTQKKSTS 332 (341) Q Consensus 311 YvVEdyg~~~~~~~~~~~~~~~ 332 (341) ||||||||++.+| +++.+++ T Consensus 318 YvVEd~~~~a~ie--nI~~~~a 337 (337) T protein:vir:10 318 YVVEDFGCGCVAE--NIELAAA 337 (337) T ss_pred eeeeccccEEEEe--ceeecCC Confidence 9999999988887 4444443 No 11 >protein:vir:98566 Length: 355 # NCBI annotation: gp5 # Family: family:all:201 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958060;genbank:gi:41057357;genbank:GeneID:2744237 Probab=100.00 E-value=1.2e-170 Score=952.10 Aligned_cols=333 Identities=26% Similarity=0.405 Sum_probs=311.5 Q ss_pred ccHHHHHHHHHHHHHHHHhhCch--hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVS--NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRK 82 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~--~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt 82 (341) |+++||++|++|++++|++|||+ +++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+||||| T Consensus 1 M~~~tr~~~~~y~~~~A~~ngv~~~~~~~~FsV~P~v~q~L~~~i~ess~FL~~INvv~V~e~~Ge~i~lgv~g~iagrt 80 (355) T protein:vir:98 1 MRPETRFKFNAYLTRVAELNNISTDDVSKKFTVEPSVTQTLMNTVQASSAFLKTINILPVAEMKGEKIGVGVTGTIASTT 80 (355) T ss_pred CChHHHHHHHHHHHHHHHHhCCChhHccceeecCHHHHHHHHHHHHHHHHHhhcCceeccccceeeEeeeccCccccccc Confidence 99999999999999999999996 5899999999999999999999999999999999999999999999999999999 Q ss_pred CC----Cccccc-cCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 83 AG----GRFTKQ-VGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 83 ~t----~r~~r~-~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) +| +|.+++ .++++++|+|+|||||+||+|++||+||| ||||++||++++.+|+|||||||||||+|+|++|| T Consensus 81 dT~~~~~R~~~~~~~l~~~~Y~c~qtn~dt~i~y~~LD~WA~---~~dF~~r~~~~i~k~~ALD~i~IGfNG~s~A~~Td 157 (355) T protein:vir:98 81 DTSGDKERQTADFTALESSKYECNQINFDFHLKYKTLDLWAR---FQDFQRRIRDAIVKRQALDLIMAGFNGTTRADTSD 157 (355) T ss_pred cCCCCCCcccccccccCCCccEEEEeeeeeeecHHHHHHHhc---ChhHHHHHHHHHHHHHhhchhhhcccceeeeccCC Confidence 87 355555 48999999999999999999999999999 89999999999999999999999999999999999 Q ss_pred hhhccchhhhhhhHHHHHHHhhcccccccc----------ceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeC Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDVD----------VYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVG 227 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~~----------~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG 227 (341) |++|||||||||||||++|+++|+|||+++ ++++|+||||+||||||+|++++|||||||++|||||||| T Consensus 158 ~~~nPllqDVNkGWlQ~~Re~ap~~v~~~~~~~~~~~~~~~i~~G~~gdy~NLDAlV~D~~~~lI~~~~~~d~dLVvivG 237 (355) T protein:vir:98 158 RTKNTLLQDVAVGWLQKYRNEAPARVMSNITDADGKVVSAVIRVGKNGDYENIDALVMDATNNLIDEVYQDDPNLVAIVG 237 (355) T ss_pred hhhCcCccccchhHHHHHHhcchhhhhhhhcccCccccccceeeCCCCCcccHHHHHHHHHhccCChHHhcCCCEEEEEc Confidence 999999999999999999999999999764 3577999999999999999999999999999999999999 Q ss_pred hHHHHHHHhHHHhccChhHHHHHHHHH--HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccccccee Q lcl|Aclame:pro 228 SGLIGAAQAKLYDKADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSK 305 (341) Q Consensus 228 ~dLla~~~~~l~n~~~~ptE~~a~~~i--~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve 305 (341) ||||++|||||+|++++|||++|+|+| +|+||||||++|||||+++||||+|||||||||+|++||+++|||+||||| T Consensus 238 ~dLla~k~~~l~n~~~~ptE~~Aa~~i~s~k~iGGlpa~~~PffP~~~~lVT~L~NLsIY~Q~gs~RR~~~d~p~r~rie 317 (355) T protein:vir:98 238 RKLLADKYFPLVNKQQENSESLAADIIISQKRIGNLPAVRVPYFPANAVLVTTLENLSIYFMDESHRRSIDENPKKDRVE 317 (355) T ss_pred hhhhHHHhhhHhhccCCcHHHHHHHHHHHhhhhCCceeEEccccCCCceEEeeccccEEEEecCcEEEEEEecccccccc Confidence 999999999999999999999999998 589999999999999999999999999999999999999999999999999 Q ss_pred cccc---ceeeccchheeeeccccccCCcchhcccccC Q lcl|Aclame:pro 306 THTG---AWKVTQWVCWKRSPLTTQKKSTSALNHRSER 340 (341) Q Consensus 306 ~y~s---~YvVEdyg~~~~~~~~~~~~~~~a~~~~~~~ 340 (341) ||+| +||||||||++.+|....++++++...-+.- T Consensus 318 ~y~s~Ne~YvVEd~~~~a~ienI~~~~~~~~~~~~~~a 355 (355) T protein:vir:98 318 NYESMNIDYVVEVYAAGCLLENITLGDFTAPAAPESGA 355 (355) T ss_pred chhhhcceeeeeccccEEEeeceeeeCCCCCcccccCC Confidence 9966 9999999988888755555443333333333 No 12 >protein:vir:1829 Length: 355 # NCBI annotation: major capsid protein # Family: family:all:201 # MgeID: mge:324 # MgeName: 186 # Cross-refs: genbank:acc:NP_052253;genbank:gi:9634060;genbank:GeneID:1262428 Probab=100.00 E-value=2.3e-170 Score=950.62 Aligned_cols=332 Identities=27% Similarity=0.429 Sum_probs=311.6 Q ss_pred ccHHHHHHHHHHHHHHHHhhCch--hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVS--NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRK 82 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~--~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt 82 (341) |+++||++|++|++++|++|||+ +++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+||||| T Consensus 1 M~~~tr~~~~~y~~~~A~~ngv~~~~~~~~Fsv~P~v~q~L~~~i~ess~FL~~INvv~V~e~~Ge~i~lgv~g~iagrt 80 (355) T protein:vir:18 1 MRQETRFKFNAYLTQLAKLNGISVDDVSKKFTVEPSVTQTLMNTVQASSAFLQMINILPVAEMKGEKIGVGVTGTIASTT 80 (355) T ss_pred CChHHHHHHHHHHHHHHHHhCCChhHccceeccCHHHHHHHHHHHHHHHHHhhcCceeccccceeeEEeeccCcceeecc Confidence 99999999999999999999996 7899999999999999999999999999999999999999999999999999999 Q ss_pred CC----Cccccc-cCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 83 AG----GRFTKQ-VGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 83 ~t----~r~~r~-~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) +| +|.+++ .++++++|+|+|||||+||+|++||+||| ||||++|+++++.+|+|||||||||||+|+|++|| T Consensus 81 dT~~~~~R~~~~~~~l~~~~Y~c~qtn~dt~i~y~~LD~WA~---~~dF~~r~~~~i~k~~ALD~i~IGfNG~s~A~~Td 157 (355) T protein:vir:18 81 DTSGDKERQTADFTALESNKYECNQINFDFHLTYKRLDLWAR---FQDFQRRIRDAIVQRQALDFIMAGFNGTTRADTSD 157 (355) T ss_pred ccCCCCCcccccccccCCCccEEEEeeeeeeecHHHHHHHhc---ChhHHHHHHHHHHHHHhhchhhhcccceeeeccCC Confidence 87 355555 48999999999999999999999999999 89999999999999999999999999999999999 Q ss_pred hhhccchhhhhhhHHHHHHHhhcccccccc----------ceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeC Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDVD----------VYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVG 227 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~~----------~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG 227 (341) |++|||||||||||||++|+++|+|||+++ +|++|+||||+||||||+|++++|||||||++|||||||| T Consensus 158 ~~~nPllqDVNkGWlQ~~Re~ap~rV~~~~~~~~~~~~~~~i~~G~~gdy~NLDAlV~d~~~~lI~~~~~~d~dLVvivG 237 (355) T protein:vir:18 158 RVKNPMLQDVAVGWLQKYRNEAPARVMSNITDADGKVVSAVIRVGKNGDYENLDALVMDGTNTLIDEIYQDDPKLVAIVG 237 (355) T ss_pred hhhCcCccccchhHHHHHHhcchhhhhccccccccccccceeeecCCCCcccHHHHHHHHHhccCChHHhcCCCEEEEEc Confidence 999999999999999999999999999864 4677999999999999999999999999999999999999 Q ss_pred hHHHHHHHhHHHhccChhHHHHHHHHH--HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccccccee Q lcl|Aclame:pro 228 SGLIGAAQAKLYDKADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSK 305 (341) Q Consensus 228 ~dLla~~~~~l~n~~~~ptE~~a~~~i--~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve 305 (341) ||||++|||||+|++++|||++|+++| +|+||||||++|||||+++||||+|||||||||+|++||+++|||+||||| T Consensus 238 ~dLla~k~~~l~n~~~~ptE~~Aa~~i~s~k~iGGlpa~~~PffP~~~~lVT~L~NLsIY~Q~gs~RR~~~d~p~r~rie 317 (355) T protein:vir:18 238 RKLLADKYFPLVNKQQENTESLAADIIISQKRIGNLPAVRVPYFPANAVFVTTLENLSIYFMDESHRRSIDENPKKDRVE 317 (355) T ss_pred hhhhHHHHhHHhhccCChHHHHHHHHHHHHHhhCCceeEEccccCCCceEEeeccccEEEEecCcEEEEEEecccccccc Confidence 999999999999999999999999988 689999999999999999999999999999999999999999999999999 Q ss_pred cccc---ceeeccchheeeeccccccCC-cchhccccc Q lcl|Aclame:pro 306 THTG---AWKVTQWVCWKRSPLTTQKKS-TSALNHRSE 339 (341) Q Consensus 306 ~y~s---~YvVEdyg~~~~~~~~~~~~~-~~a~~~~~~ 339 (341) ||+| +||||||||++.+|...++++ +||--.--+ T Consensus 318 ~y~s~Ne~YvVEd~~~~a~ieni~~~~~~~~~~~~~g~ 355 (355) T protein:vir:18 318 NYESMNIDYVVEAYAAGCLLENITLGDFTAPAAPEGGE 355 (355) T ss_pred chhhhcceeeeeccccEEEEeeeeecCCCCcccccCCC Confidence 9966 999999998888875554444 334333333 No 13 >protein:vir:1153 Length: 338 # NCBI annotation: predicted major capsid protein # Family: family:all:201 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490602;genbank:gi:17313222;genbank:GeneID:927319 Probab=100.00 E-value=2e-170 Score=950.90 Aligned_cols=322 Identities=32% Similarity=0.495 Sum_probs=310.1 Q ss_pred ccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAG 84 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t 84 (341) |+++||++|++|++++|++|||++++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+|||||+| T Consensus 1 M~~~tr~~~~~y~~~~A~~ngv~~~~~~FsV~P~v~q~L~~~i~ess~FL~~Invv~V~e~~Ge~v~lg~~g~iagrtdT 80 (338) T protein:vir:11 1 MRNETRKQFDAYLAQLAKLNGVNSAVQTFAVEPSVQQKLEQRIQESSEFLKQINVYGVDELQGEKIGIGVSGTIASRTDT 80 (338) T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccceeeeCHHHHHHHHHHHHHHHHhhccCceecccceeeeEeeeccCccccccccC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986 Q ss_pred ----Ccccccc-CCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChh Q lcl|Aclame:pro 85 ----GRFTKQV-GVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPS 159 (341) Q Consensus 85 ----~r~~r~~-~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~ 159 (341) +|+|+++ ++++++|+|+|||||+||+|++||+||| ||||++|+++++.+|+|||||||||||+|+|++|||+ T Consensus 81 ~~~~~R~~~~~~~l~~~~Y~c~qtn~dt~i~y~~LD~WA~---~~dF~~r~~~~i~k~~ALD~i~IGfnG~s~A~~Td~~ 157 (338) T protein:vir:11 81 TGDGVRKPRDVSALDNQRYECKHTDFDTAITYAMLDAWAK---FPEFQALLRDAILKRQALDRLMIGFNGTSAAATTNRA 157 (338) T ss_pred CCCCccccccccccCCCccEEEEeeeeeeecHHHHHHHhc---ChhHHHHHHHHHHHHHhhchhhhcccceeeccCCChh Confidence 5899987 8999999999999999999999999999 8999999999999999999999999999999999999 Q ss_pred hccchhhhhhhHHHHHHHhhccccccccc----eee--cCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHH Q lcl|Aclame:pro 160 ANPLGQDVNEGWIAFVKNRKASQVVDVDV----YFD--ETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGA 233 (341) Q Consensus 160 anPllqDVNkGWlq~~Re~~~~~v~~~~~----~~~--g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~ 233 (341) +||+||||||||||++|+++|+|||++++ +.+ |++|||+||||||+|++++|||||||++||||||||||||++ T Consensus 158 ~nPllqDVNkGWlQ~~Re~ap~rv~~~~~~~~~i~i~~g~~gdy~nLDalV~d~~~~lI~~~~~~d~dLVvivG~dLlad 237 (338) T protein:vir:11 158 ANPLLQDVNIGWFQQYRNNAPARVLKEGKTTGKVVVGNGADADYKNLDALVFDVVSSLIDPWHRRDPGLVVILGRELVHD 237 (338) T ss_pred hCcCccccchhHHHHHHhhhhhhhhhcccccceeeecCCCCCccccHHHHHHHHHhccCChHHhcCCCEEEEEchhhhHH Confidence 99999999999999999999999998854 444 566999999999999999999999999999999999999999 Q ss_pred HHhHHHhccChhHHHHHHHHH--HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceecccc-- Q lcl|Aclame:pro 234 AQAKLYDKADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTG-- 309 (341) Q Consensus 234 ~~~~l~n~~~~ptE~~a~~~i--~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s-- 309 (341) |||||+|++++|||++|+++| +|+||||||++|||||++++|||+|||||||||+|++||+++|||+|||||+|+| T Consensus 238 k~~~l~n~~~~ptE~~Aa~~~~s~k~iGGlpa~~~PffP~~~~lVT~L~NLsIY~Q~gs~RR~~~d~p~r~rie~y~s~N 317 (338) T protein:vir:11 238 KYFPMVNKDQPATEKIATDLILSQKRMGGLPPVEVPYVPEKGLMVTTLKNLSLYWQIGGRRRYLKEVPEKNRIENYESSN 317 (338) T ss_pred HHhHHHhcCCChHHHHHHHHHHHhhhhCCceeEEccccCCCceEEeeccccEEEEecCcEEEEEEeccccccccchhhhc Confidence 999999999999999999988 7899999999999999999999999999999999999999999999999999966 Q ss_pred -ceeeccchheeeeccccccC Q lcl|Aclame:pro 310 -AWKVTQWVCWKRSPLTTQKK 329 (341) Q Consensus 310 -~YvVEdyg~~~~~~~~~~~~ 329 (341) +||||||||++.+|...+++ T Consensus 318 e~YvVEd~~~~a~ieni~~~~ 338 (338) T protein:vir:11 318 DAYVVEDYGLGCLVENIEVAE 338 (338) T ss_pred cceeeeccccEEEeecceecC Confidence 99999999998888555555 No 14 >protein:vir:3746 Length: 336 # NCBI annotation: orf15 # Family: family:all:201 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043487;genbank:gi:9628622;genbank:GeneID:1261135 Probab=100.00 E-value=6e-163 Score=909.93 Aligned_cols=319 Identities=26% Similarity=0.371 Sum_probs=301.2 Q ss_pred HHHHHHHHHHHHHHHhhCchh----hcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCC Q lcl|Aclame:pro 8 SAREYMDNFAQQLAKSYGVSN----VAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKA 83 (341) Q Consensus 8 ~tr~~~~~y~~~~A~~ngv~~----~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~ 83 (341) -||++|++|++++|++|||+. ++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+|||||+ T Consensus 1 mtr~~~~~y~~~~A~~ngv~~a~~~~~~~Fsv~P~v~q~L~~~i~ess~FL~~INvv~V~e~~Ge~v~lg~~g~iagrtd 80 (336) T protein:vir:37 1 MNKQAYYALAAALAKHFNQPLDSVLRGESFALKAPEAALLGENIQQRSDFLKQINMIQVAHTKGQKLFGATEKGVTGRKQ 80 (336) T ss_pred CcHHHHHHHHHHHHHHhCCChhhhccCceeecCHHHHHHHHHHHHHHHHHhhcCceeecccccceEeeeccCcccccccC Confidence 358999999999999999974 4589999999999999999999999999999999999999999999999999999 Q ss_pred CCccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHH-HHHHHHHHHHHhhhHHHHhhccccccccCChhhcc Q lcl|Aclame:pro 84 GGRFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFM-KHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANP 162 (341) Q Consensus 84 t~r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~-~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anP 162 (341) |+|+++++++++++|+|+|||||+||+|++||+||| ||||+ .+++.++.+|+|||||||||||+|+|++|| || T Consensus 81 t~R~~~~~~l~~~~Y~c~qTn~dt~i~y~~LD~WA~---~~df~~~~~~~~~~r~iALD~i~IGfnG~s~A~~Td---nP 154 (336) T protein:vir:37 81 TGRNLANLDHTQNGFELAETDSGIIVPWALFDSFAI---FKDRLVELYSEYFQNQVALDILQIGWNGQSVADNTT---KA 154 (336) T ss_pred CCccccccCcCCcccEEEEeeeeeeecHHHHHHHhc---ChhHHHHHHHHHHHHHHhhchhhhcccceeeccCCC---CC Confidence 999999999999999999999999999999999999 89965 667888899999999999999999999998 99 Q ss_pred chhhhhhhHHHHHHHhhccccccccc------eeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHh Q lcl|Aclame:pro 163 LGQDVNEGWIAFVKNRKASQVVDVDV------YFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQA 236 (341) Q Consensus 163 llqDVNkGWlq~~Re~~~~~v~~~~~------~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~ 236 (341) +||||||||||++||++|+|||++++ +.+|+||||+||||||+|+++ +||||||++||||||||||||+++|+ T Consensus 155 llqDVNkGWlQ~~Re~a~~~v~~~~~~~~g~i~~~G~~gdy~NLDalV~D~~~-~I~~~~~~d~dLVvivG~dLla~~~~ 233 (336) T protein:vir:37 155 DLSDVNKGWLKLLQEQRAANFMTESTKSSGKITIFGDNADYANLDDLAFDLKQ-GLDFRHQNRNDLVFLVGADLVSKETK 233 (336) T ss_pred cccccchhHHHHHHhccchhhcccccccCCceEEecCCCCcccHHHHHHHHHh-cCchHHhcCCCeEEEEchhhhhhhhh Confidence 99999999999999999999998753 456999999999999999997 69999999999999999999999999 Q ss_pred HHHhc-cChhHHHHHHHH--HHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceecccc---c Q lcl|Aclame:pro 237 KLYDK-ADKPSEQIAAQK--LDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTG---A 310 (341) Q Consensus 237 ~l~n~-~~~ptE~~a~~~--i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s---~ 310 (341) +|+|+ +++|||++|+++ ++|+||||||++|||||++++|||+|||||||||+|++||+++|||+|||||||+| + T Consensus 234 ~l~~~~~~~PtE~~Aa~~~~~~k~iGGlpa~~~PffP~~~~lVT~L~NLsIY~Q~gs~RR~~~d~p~r~rie~y~s~Ne~ 313 (336) T protein:vir:37 234 LIQQKHGLTPTEKAALGSHNLMGSFGGMNAITPPNFPARAAAVTTLKNLSVYTEAESVRRSLRNDEDKKGLVTSYYRQEG 313 (336) T ss_pred hhhhhcCCCHHHHHHHHHHHHHHhhCCceeEEccccCCCceEEeechhcEEEEecCcEEEEEEEccccccccchhhhcce Confidence 99997 579999999965 58999999999999999999999999999999999999999999999999999966 9 Q ss_pred eeeccchheeeeccccccCCcch Q lcl|Aclame:pro 311 WKVTQWVCWKRSPLTTQKKSTSA 333 (341) Q Consensus 311 YvVEdyg~~~~~~~~~~~~~~~a 333 (341) ||||||||++.+|...++++.-- T Consensus 314 YvVEd~~~~a~iE~i~v~~~~e~ 336 (336) T protein:vir:37 314 YVVEDLGLMTAIDHTKVKLNGEV 336 (336) T ss_pred eeeeccccEEEeeeeeeeecCcC Confidence 99999999999988888777544 No 15 >protein:vir:98856 Length: 343 # NCBI annotation: hypothetical protein # Family: family:all:201 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654732;genbank:gi:109302917;genbank:GeneID:4156061 Probab=100.00 E-value=1.4e-162 Score=907.95 Aligned_cols=326 Identities=25% Similarity=0.383 Sum_probs=307.7 Q ss_pred ccHHHHHHHHHHHHHHHHhhCch----hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVS----NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~----~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) |+++||++|++|++++|++|||+ +++++|+|+|++||+|+++|||||+||++||+++|+|++|+++.+|.+|+++| T Consensus 1 M~~~tr~~~~~y~~~~A~~ngv~~~~~~~~~~FsV~P~v~q~L~~~i~ess~FL~~INvv~V~q~~g~v~~~~~sg~~t~ 80 (343) T protein:vir:98 1 MNKTAQELFYSLIGDAAEYYGANPALALAGKQFSIEAPKESVLLGAIQQRSNFLEKINCVFSERYQRAIDLRSNRKRHYG 80 (343) T ss_pred CChHHHHHHHHHHHHHHHHhCCccchhccCceeeecHHHHHHHHHHHHHHHHHhhcCceecchhhcceEEEeecCccccC Confidence 99999999999999999999996 67899999999999999999999999999999999999999999999999999 Q ss_pred CCCC-CccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchh-HHHHHHHHHHHHHhhhHHHHhhccccccccCCh Q lcl|Aclame:pro 81 RKAG-GRFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQ-FMKHLTEFSNQMFALDIMRIGWNGVSAEADTDP 158 (341) Q Consensus 81 rt~t-~r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~d-F~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~ 158 (341) |++| +++.+..+.++++|+|+|||||+||+|++||+||| ||| |++||++++.+|+|||||||||||+|+|++| T Consensus 81 r~~t~~~~~~~~~~~~~~Y~c~qTn~dt~i~Y~~lD~WA~---~~deF~~r~~~~i~~~~ALD~i~IGfNGts~A~~T-- 155 (343) T protein:vir:98 81 AHDRRTPIQQRWTRQVMSMNVSRQIQACLIPWAKLDQWGH---LKDKFASLYAEFVQNQIALDMIKIGFYGTSVGTDT-- 155 (343) T ss_pred ccccCCCccccccCCCCccEEEEeeeeeeccHHHHHHhhc---ChhHHHHHHHHHHHHHHhhccceecccceeeccCC-- Confidence 9987 56666677888999999999999999999999999 898 9999999999999999999999999999998 Q ss_pred hhccchhhhhhhHHHHHHHhhccccccccc-----eeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHH Q lcl|Aclame:pro 159 SANPLGQDVNEGWIAFVKNRKASQVVDVDV-----YFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGA 233 (341) Q Consensus 159 ~anPllqDVNkGWlq~~Re~~~~~v~~~~~-----~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~ 233 (341) +|||||||||||||++||++|+|||++++ +.+|+||||+||||||+|+++ +||||||++||||||||||||++ T Consensus 156 -~nPllqDVN~GWLQ~~Re~ap~rVm~~~~~~~~~~~~G~ggdy~NLDalV~D~~~-~I~~~~~~d~dLVvivG~dLla~ 233 (343) T protein:vir:98 156 -SDPNLADVNKGWIQFVRENKATQILTQGATSGEIRLFGEGADYVNLDELAYDLKQ-GLDARHRDAGDLVFLVGADLVAK 233 (343) T ss_pred -CCcchhhcchHHHHHHHhcchhhhhccceeccceeEecCCCCcccHHHHHHHHHh-cCchHHhcCCCEEEEEchhhhhh Confidence 69999999999999999999999998865 357999999999999999985 99999999999999999999999 Q ss_pred HHhHHHhc-cChhHHHHHHHHH--HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceecccc- Q lcl|Aclame:pro 234 AQAKLYDK-ADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTG- 309 (341) Q Consensus 234 ~~~~l~n~-~~~ptE~~a~~~i--~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s- 309 (341) |||||+|+ +++|||++|++++ +|+||||||++|||||+++||||+|||||||||+|++||+++|||+|||||||+| T Consensus 234 ~~~~l~n~~~~~ptEk~Aa~~~~~~k~iGGl~a~~~PfFP~~~llVT~L~NLsIY~Q~gs~RR~~~d~p~r~rie~y~s~ 313 (343) T protein:vir:98 234 EASLVYKGNGLIATEKAALNTHDLMKSFGGMPAMIVPNMPPRAAIVTSLSNLSIYTQEGSMRRGMKDDDDKKAVRDSYYR 313 (343) T ss_pred hhhhhhhhcCCChHHHHHHHHHHHHHhhCCCeeEEccccCCCceEEeeccccEEEEecCcEEEEEEeccccccccchhhh Confidence 99999996 6799999999875 7999999999999999999999999999999999999999999999999999966 Q ss_pred --ceeeccchheeeeccccccCCcchhccc Q lcl|Aclame:pro 310 --AWKVTQWVCWKRSPLTTQKKSTSALNHR 337 (341) Q Consensus 310 --~YvVEdyg~~~~~~~~~~~~~~~a~~~~ 337 (341) +||||||||++.+|...+++++.+--.. T Consensus 314 Ne~YvVEd~~~~a~iE~i~v~~~~~~g~w~ 343 (343) T protein:vir:98 314 NEAYAVEDCGKFMAVDFTKVKLSSGKGTWK 343 (343) T ss_pred cceeeeeccccEEEeeeeeeeecCCCCCCC Confidence 9999999999999999988887555333 No 16 >protein:vir:3783 Length: 336 # NCBI annotation: capsid # Family: family:all:201 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536823;genbank:gi:17981832;genbank:GeneID:929211 Probab=100.00 E-value=1.2e-162 Score=908.25 Aligned_cols=319 Identities=26% Similarity=0.368 Sum_probs=301.3 Q ss_pred HHHHHHHHHHHHHHHhhCchh----hcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCC Q lcl|Aclame:pro 8 SAREYMDNFAQQLAKSYGVSN----VAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKA 83 (341) Q Consensus 8 ~tr~~~~~y~~~~A~~ngv~~----~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~ 83 (341) -||++|++|++++|++|||+. ++++|+|+|++||+|+++|||||+||++||+++|+|++||+|++|++|+|||||+ T Consensus 1 mtr~~~~~y~~~~A~~ngv~~a~~~~~~~Fsv~P~v~q~L~~~i~ess~FL~~INvv~V~e~~Ge~v~lg~~g~iagrtd 80 (336) T protein:vir:37 1 MNKQAYYALAAALAKHFNQPLDSVLRGESFALKAPEAALLGENIQQRSDFLKGINMVQVAHTKGTKLFGATEKGVTGRKQ 80 (336) T ss_pred CcHHHHHHHHHHHHHHhCCChhhhcccceeecCHHHHHHHHHHHHHHHHHhhcCceeecccccceEEeeccCcccccccC Confidence 358999999999999999974 4589999999999999999999999999999999999999999999999999999 Q ss_pred CCccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHH-HHHHHHHHHHHhhhHHHHhhccccccccCChhhcc Q lcl|Aclame:pro 84 GGRFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFM-KHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANP 162 (341) Q Consensus 84 t~r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~-~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anP 162 (341) |+|++++.++++++|+|+|||||+||+|++||+||| ||||+ .+++.++.+|+|||||||||||+|+|++|| || T Consensus 81 t~r~r~~~~l~~~~Y~c~qTn~dt~i~y~~LD~WA~---~~d~~~~~~~~~~~r~iALD~i~IGfnG~s~A~~Td---nP 154 (336) T protein:vir:37 81 TGRNLATLDHSQNGYELSETDSGILVNWSLFDSFAI---FKDRLVELYSEYFQNQVALDILQIGWNGQSVATNTT---KT 154 (336) T ss_pred CCCCccccCCCCCccEEEEeeeeeeccHHHHHHHhc---ChhHHHHHHHHHHHHHHhcchhhhcccceeeccCCC---Cc Confidence 999999999999999999999999999999999999 89855 667888889999999999999999999999 99 Q ss_pred chhhhhhhHHHHHHHhhccccccccc------eeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHh Q lcl|Aclame:pro 163 LGQDVNEGWIAFVKNRKASQVVDVDV------YFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQA 236 (341) Q Consensus 163 llqDVNkGWlq~~Re~~~~~v~~~~~------~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~ 236 (341) +||||||||||++||++|+|||++++ +.+|+||||+||||||+|+++ +||||||++||||||||||||+++|+ T Consensus 155 llqDVNkGWlQ~~Re~a~~~v~~~~~~~~g~i~~~G~~gdy~NLDalV~D~~~-~I~~~~~~d~dLVvivG~dLla~~~~ 233 (336) T protein:vir:37 155 DLSDVNKGWLKLLQEQRAANFMTESTKSSGKITIFGDNADYANLDDLAFDLKQ-GLDFRHQNRNDLVFLVGADLVSKETK 233 (336) T ss_pred cccccchhHHHHHHhccchhhcccccccCCceEEecCCCCcccHHHHHHHHHh-ccchHHhcCCCeEEEEchhhhhhhhh Confidence 99999999999999999999998753 456999999999999999997 79999999999999999999999999 Q ss_pred HHHhc-cChhHHHHHHH--HHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceecccc---c Q lcl|Aclame:pro 237 KLYDK-ADKPSEQIAAQ--KLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTG---A 310 (341) Q Consensus 237 ~l~n~-~~~ptE~~a~~--~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s---~ 310 (341) +|+|+ +++|||++|++ +++|+||||||++|||||++++|||+|||||||||+|++||+++|||+|||||||+| + T Consensus 234 ~l~~~~~~~PtE~~Aa~~~~~~k~iGGlpa~~~PffP~~~~lVT~L~NLsIY~Q~gs~RR~~~d~p~r~rie~y~s~Ne~ 313 (336) T protein:vir:37 234 LIQQKHGLTPTEKAALGSHNLMGSFGGMNAITPPNFPARAAAVTTLKNLSVYTEAESVRRSLRNDEDKKGLVTSYYRQEG 313 (336) T ss_pred hhhhhcCCCHHHHHHHHHHHHHHhhCCceEEEccccCCCceEEeeccccEEEEecCcEEEEEEEccccccccchhhhcce Confidence 99997 57999999995 458999999999999999999999999999999999999999999999999999966 9 Q ss_pred eeeccchheeeeccccccCCcch Q lcl|Aclame:pro 311 WKVTQWVCWKRSPLTTQKKSTSA 333 (341) Q Consensus 311 YvVEdyg~~~~~~~~~~~~~~~a 333 (341) ||||||||++.+|...++++.-- T Consensus 314 YvVEd~~~~a~iE~i~v~~~~e~ 336 (336) T protein:vir:37 314 YVVEDLGLMTAIDHTKVKLNGEV 336 (336) T ss_pred eeeeccccEEEeeeeeeeccccC Confidence 99999999999998888887544 No 17 >protein:vir:3158 Length: 321 # NCBI annotation: capsid protein gpE # Family: family:all:1377 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665929;genbank:gi:22091115;genbank:GeneID:951342 Probab=100.00 E-value=2.6e-72 Score=413.00 Aligned_cols=308 Identities=11% Similarity=0.136 Sum_probs=249.5 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCc--hhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeeccccccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGV--SNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLY 78 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv--~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~i 78 (341) |+ ++.|++|++++++.+++ ++++..|+|.|+++|+|+++++|+|.||++||+++|++.+|+++.+|+++++ T Consensus 1 ~~-------~k~~~~~l~~~~~~~~~~~~~~~~g~~v~~~~~~~l~~~i~e~s~~l~~i~v~~v~~~~~~i~~~~~~~~~ 73 (321) T protein:vir:31 1 MA-------SRTINNDLSRITEKNALTVDDLDAGGTLPDPLWDEFWTDMIEETPLLDAIRTETVGAKKTRIPTLNIGERH 73 (321) T ss_pred Cc-------hHHHHHHHHHHHHhccccccccCCcceeCHHHHHHHHHHHHHhhhhhhhceeeeccCcceeeeeeccCCcc Confidence 55 88899999999999886 6788899999999999999999999999999999999999999999998877 Q ss_pred CCCCCC---CccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcccccccc Q lcl|Aclame:pro 79 TGRKAG---GRFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEAD 155 (341) Q Consensus 79 agrt~t---~r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~ 155 (341) .++..+ .+.+..+++++.+|.|++++++++|+|++||.|++ +|||++++++.+++++|+|++++||||++++.+ T Consensus 74 ~~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~it~e~L~d~a~---~~d~e~~i~~~ia~~~a~~~~~~~~nGd~~~~~ 150 (321) T protein:vir:31 74 RRPQDEGEWNENESDVSTGTIDISTEKATVAWDLPREVVQENPE---GEALADRILNLMTDAWSADVEDLAANGDEDAED 150 (321) T ss_pred cccccccccccccccceeeeeeeeeEEEEeehhccHHHHHhhhc---chhHHHHHHHHHHHHHHHHHHhheeeccccCCC Confidence 554433 34455678999999999999999999999999997 799999999999999999999999999876544 Q ss_pred CChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHH Q lcl|Aclame:pro 156 TDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQ 235 (341) Q Consensus 156 TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~ 235 (341) + +++||+||||++|+..+. .+.+++..++|. +.+++. .||++||+++++|||||++++.+.+ T Consensus 151 ~-------~~~~n~G~l~~a~~~~~~---------~~~~~~~~~~d~-l~~l~~-~l~~~yr~~~~~v~im~~~~~~~~~ 212 (321) T protein:vir:31 151 S-------FENQNDGFITVAEGDVET---------IDAADDILDNDL-VIRTIA-GLDSKYRARMNPALIVSEDQLLSYH 212 (321) T ss_pred c-------ccccchhhhhhhcccccc---------ccccccccCHHH-HHHHHH-hccHhHhcCCCeEEEechHHHHHHH Confidence 3 789999999999876432 223444455663 345555 6799999999999999999998877 Q ss_pred hHHHhccChhHHHHHHHH-HHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcc----cccceecccc- Q lcl|Aclame:pro 236 AKLYDKADKPSEQIAAQK-LDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHES----DRKRSKTHTG- 309 (341) Q Consensus 236 ~~l~n~~~~ptE~~a~~~-i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~----~r~rve~y~s- 309 (341) .+|.+. +.|.+..+... -.++|+|+|++++||||++.+++|+|+||++|++++.++|+..+.+ +++|+++|.+ T Consensus 213 ~~l~~~-~~~~~~~~l~~~~~~tl~G~pvv~~~~mP~~~il~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (321) T protein:vir:31 213 YTLTDR-DTPLGDNVIMGEADVNPFSFPIIGSGLWPDDKAMFTDPQNLIYALYRDLEIDVLTESDKVSERDLHARYFMRG 291 (321) T ss_pred HHHhcC-CCccccchhhccccccccceeEEEcCCCCCCcEEEeccccEEEEEeeccEEEEeecCccccccceeeEeeeee Confidence 777665 34554433221 2468999999999999999999999999999999997777665543 5789999854 Q ss_pred --ceeeccchheeeeccccccCCcchhccccc Q lcl|Aclame:pro 310 --AWKVTQWVCWKRSPLTTQKKSTSALNHRSE 339 (341) Q Consensus 310 --~YvVEdyg~~~~~~~~~~~~~~~a~~~~~~ 339 (341) +||||||++++..+ .+++|--+++.-+. T Consensus 292 ~~~~~ve~~~a~a~~~--~i~~~~~~~~~~~~ 321 (321) T protein:vir:31 292 DDDFAIENTEAVVLAE--GLGDPLEHLEEETS 321 (321) T ss_pred ecceeEeccccEEEEe--cCCcchhcccCCCC Confidence 99999998766554 23333333333222 No 18 >protein:vir:99424 Length: 360 # NCBI annotation: hypothetical protein # Family: family:all:1377 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919080;genbank:gi:119757038;genbank:GeneID:4606077 Probab=100.00 E-value=8.5e-42 Score=245.74 Aligned_cols=310 Identities=14% Similarity=0.123 Sum_probs=210.8 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCc-hhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccc--eeecccccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGV-SNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQ--VVDVGVSGL 77 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv-~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge--~i~lgv~g~ 77 (341) |+ =+...-+..|+++..+++++-. ++++ +|.+.|+++++|..++|+++.||++|+++++...+|+ +|++|.-.. T Consensus 1 ~~--~~~~~~~~~n~~~~~i~k~~it~~~l~-~g~L~p~~a~~Fl~~v~~~t~iL~~~r~~~~~s~~~ei~kig~G~r~~ 77 (360) T protein:vir:99 1 MS--SNSTIDSVRNQNMNSLSQKDIGLAELD-GFQLPVDVTEEFLERMQKGVQILGMADTMTLARLEMEVPQFGVPRLSG 77 (360) T ss_pred Cc--chhHHHHHhhhHHHHHHhhhccccccC-ceeecHHHHHHHHHHHhhccchhhhcceeecccccccccccccceeec Confidence 33 4455567788999999888754 5665 7999999999999999999999999999999999999 565555333 Q ss_pred cCCCCC---C---CccccccCC-CCcceEEEEeeeeeeecHH--HHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhc Q lcl|Aclame:pro 78 YTGRKA---G---GRFTKQVGV-GGHKYKLAETDSCAAITWA--MLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWN 148 (341) Q Consensus 78 iagrt~---t---~r~~r~~~l-~~~~Y~c~qtn~dt~i~y~--~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfn 148 (341) .++... + ++.+..+.. .-.++.|. .+|.+. ..+.|.. ..+|++.+.+.++++++.|+.++||| T Consensus 78 r~~~e~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~i~~~~~~~n~~~~---~~~f~~~i~~~~ae~~~~Dle~l~~~ 149 (360) T protein:vir:99 78 HTRDEEGSRTENSEAESGSVKFNATDKSYYI-----LVEPKRDALKNTHYG---PDQFGDYIVDQFIERYGNDLGLMGIR 149 (360) T ss_pred cccccCCCCCcCCcCccccCccccccceeeE-----eechHHHHHhhhhcc---cchhHHHHHHHHHHHHHHHHHHHHhh Confidence 333111 1 122222222 12234444 344333 4556776 56899999999999999999999999 Q ss_pred cccccccC--ChhhccchhhhhhhHHHHHHHhhcccccccc---------------------ceeecCCchhhhHHHHHH Q lcl|Aclame:pro 149 GVSAEADT--DPSANPLGQDVNEGWIAFVKNRKASQVVDVD---------------------VYFDETNGDYRTLDAMAS 205 (341) Q Consensus 149 G~s~A~~T--D~~anPllqDVNkGWlq~~Re~~~~~v~~~~---------------------~~~~g~ggdy~nLDalv~ 205 (341) |.+...++ |-+.+|++ ++|+||||+++.+ ++.+-..+ .-..|.|+-|....+|+. T Consensus 150 g~~ds~d~~~~~~~d~fl-~~~dGwlKka~~~-~~~id~a~d~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lf~ 227 (360) T protein:vir:99 150 AGASSGNLQSIGGAAELD-NTFKGWIARAEGD-AQSVDDAGDSTRIGLEDTATADADSMPSIANTDGSGNPQPVDTSLFN 227 (360) T ss_pred ccchhcccccCcccchhh-hhhHHHHHHhhcc-cchhhccccccccccccccccccccchhhhccccccccccchHHHHH Confidence 98875543 33345655 9999999999977 22221111 012366777888999999 Q ss_pred HHHhcccchhhccCC--CeEEEeChHHHHHHHhHHHhccChhHHHHHHH-HH----HHhhcCcccccCCcCCCCCEEEec Q lcl|Aclame:pro 206 DIINNQIHPMFRNDP--RLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQ-KL----DKTIAGRPAYVPPFLPDNAMVVTI 278 (341) Q Consensus 206 d~~~~li~~~~r~~~--dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~-~i----~k~igGlpa~~vPffP~~~ilVT~ 278 (341) +++.+| |..||+++ .++++++.+......-.|-++. |. +++ .| .++|-|.|++.||+||++.+|+|+ T Consensus 228 ~~~~~L-p~kyr~~~~~~~~~~~s~~~~~~yr~~L~~R~---t~--LGd~~l~g~~~~~~~Gipi~~v~~~pd~~~mlT~ 301 (360) T protein:vir:99 228 ETIQTL-DSRYRESDAYSPVLMTSPNQVQSYTMSLTERE---DP--LGSAVIFGDSDITPFSYDLVGVNGFPDEYMMFTD 301 (360) T ss_pred HHHHhc-chhhhcCcccceEEEccCchHHHHHHHHhccC---cc--cchhheecccccccceeeeEEcCCCCCCceEEec Confidence 999875 66688877 4589999986554333343433 32 222 22 247889999999999999999999 Q ss_pred cCCcEEEEecCcEEEEEEEcccc---cc--eecc---ccceeeccchheeeeccccccCCcc Q lcl|Aclame:pro 279 PENLQVLTQHGTAQRKAKHESDR---KR--SKTH---TGAWKVTQWVCWKRSPLTTQKKSTS 332 (341) Q Consensus 279 l~NLsIY~Q~gs~RR~~~d~~~r---~r--ve~y---~s~YvVEdyg~~~~~~~~~~~~~~~ 332 (341) ++||.+++-+..+.+...+ |+| +| +..| ..+|++||+.+.+-. +..+.|++ T Consensus 302 p~NLi~g~~~~iri~~~~e-~~~~~~~~~~~~~~~~~~~D~~iee~~Av~~v--t~~~~~~~ 360 (360) T protein:vir:99 302 PNNLAFGLYEEMELDQSTD-TDKVHEQRLHSRNWLEGQFDFQIKEQQAGVLV--TDLETPTA 360 (360) T ss_pred cCceeEEeeeeeEEeeccc-chhhhhhceeeeEEEEEEeeEEEEecccEEEE--ecCCCCCC Confidence 9999666666666554444 433 33 2333 239999999544332 23333444 No 19 >protein:vir:4197 Length: 314 # NCBI annotation: putative structural protein # Family: family:all:1377 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071822;genbank:gi:11863105;genbank:GeneID:1257607 Probab=100.00 E-value=8.1e-41 Score=240.37 Aligned_cols=297 Identities=13% Similarity=0.137 Sum_probs=212.3 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceec-chhhccceeecccccccC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTT-VDQIEGQVVDVGVSGLYT 79 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~-V~~~~Ge~i~lgv~g~ia 79 (341) |. +-|..|+ +=+...+++.+ .+.+.|.+.++|+++|+|+|.||++++++. +...+++.-.+|+.+.++ T Consensus 1 ~~-----~~~~~~~-----~~k~it~~d~~-gG~L~P~~~~~~i~~l~e~s~i~~~a~vi~t~~s~~~~i~~i~~g~~~~ 69 (314) T protein:vir:41 1 MD-----FLNKPFQ-----ITPKIDVPDLG-KGILAVQRFGEFVREVRENSAIIKDARVLNALKSYEVDISRISLGVELE 69 (314) T ss_pred Cc-----hhhhHHH-----hhcccccccCC-CceeChHHHHHHHHHHHhccchhhheeeecccCccceeecccccCcccc Confidence 33 1122232 22234566665 556999999999999999999999999884 566666665667666654 Q ss_pred CCCCC-----CccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccc Q lcl|Aclame:pro 80 GRKAG-----GRFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEA 154 (341) Q Consensus 80 grt~t-----~r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~ 154 (341) +..+. ......++.+..+|.|++....++|+|++|+.|+. .|+|++.+.+.+++++|.|+.+++|||.. T Consensus 70 ~~~~~~~~~~~~~~~~~tf~~~~l~~~kl~~~v~is~e~L~D~a~---~~~le~~i~~~~Ae~~g~~~~~~~~nGdg--- 143 (314) T protein:vir:41 70 PGRNTSGTKVAPTADEVTVSTNTLEMKELVTKVVLEDEALEDNIE---QSAFEQTITSLLASGVTYDLECFFLHADS--- 143 (314) T ss_pred cccccccCCccCCcccccccceeeeeEEEEEeecccHHHHHhhhc---hhhHHHHHHHHHHHHHHHHHHHHhhcccc--- Confidence 43322 22234568899999999999999999999999996 58999999999999999999999999965 Q ss_pred cCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHH Q lcl|Aclame:pro 155 DTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAA 234 (341) Q Consensus 155 ~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~ 234 (341) ++.+++|+++ +++|||++.. +++...++++|.+.+.++.+++.+|.++|+++.+++|+||+++.+ .+ T Consensus 144 -~~~s~~~~~~-~p~G~l~~a~----------~~~~~~~~~~~~~~~~~~~~l~~sl~~~yr~~~~~~~~~m~~~t~-~~ 210 (314) T protein:vir:41 144 -SLTTGRELYR-INDGWMKLAG----------NQYTDAEPEDENWPLNLFDGMMDELDTRYLQLKPRMKFYVSNEIY-NG 210 (314) T ss_pred -CCcCcccchh-cchhhhhhcc----------cceeecCccccccHHHHHHHHHHhcCchhhcCCCceEEEecHHHH-HH Confidence 3445568777 9999999642 234445677889999999999999877777788899999999976 56 Q ss_pred HhHHHhccChhHHHHHHHH-HHHhhcCcccccCCcC-----CCCCEEEeccCCcEEEEecCcEEEEEEEcccccceeccc Q lcl|Aclame:pro 235 QAKLYDKADKPSEQIAAQK-LDKTIAGRPAYVPPFL-----PDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHT 308 (341) Q Consensus 235 ~~~l~n~~~~ptE~~a~~~-i~k~igGlpa~~vPff-----P~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~ 308 (341) +-+++...++|--..+... -..+|.|+|++.+|+| |++.|++|.|+|| ||.-.-..|+..+-+.+.+++..|- T Consensus 211 ~r~~l~~~~~~l~~~~~~~~~~~~l~G~PV~~~~~~~~~~~~~~~i~fgd~~nl-v~~~~~~ir~~~~~~a~~~~~~~~~ 289 (314) T protein:vir:41 211 YRKQLLVRETGLGDSALIGATGLQYDGIPIQYVPALDALGDDKARALLTVPTNL-VYGFWRNIRIEPKRDAAMRRTEYIA 289 (314) T ss_pred HHHHHhccCCcccchhhhCCCCceecceeeEecccccccCCCCceEEEechhhe-EEEeeceeEEeecccCcCCeEEEEE Confidence 7777754444411111110 1347999999999987 6799999999999 4544444555555556667777764 Q ss_pred c---ceee--ccchheeeecccccc Q lcl|Aclame:pro 309 G---AWKV--TQWVCWKRSPLTTQK 328 (341) Q Consensus 309 s---~YvV--Edyg~~~~~~~~~~~ 328 (341) + ++.+ ||.+|.+-....... T Consensus 290 ~~r~d~~~~~~~aa~~~~~~~~~~~ 314 (314) T protein:vir:41 290 SLRADCNYEDENAAVAAVIDMSSGG 314 (314) T ss_pred EEEeceEEEEcCcEEEEEeeccCCC Confidence 4 5444 444444433332222 No 20 >protein:vir:4159 Length: 315 # NCBI annotation: structural protein # Family: family:all:1377 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046968;genbank:gi:9630538;genbank:GeneID:1261712 Probab=100.00 E-value=1.1e-35 Score=212.19 Aligned_cols=298 Identities=13% Similarity=0.150 Sum_probs=195.4 Q ss_pred cccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceec-chhhccceeeccccccc-CCC Q lcl|Aclame:pro 4 ILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTT-VDQIEGQVVDVGVSGLY-TGR 81 (341) Q Consensus 4 ~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~-V~~~~Ge~i~lgv~g~i-agr 81 (341) ++. ..-.+.+.....+ +..++++.+ .|.+.|++.++|+++++|+|.||++|+++. ....+++.-.+|+..++ .|+ T Consensus 1 ~~~-~~~~~~~~~~~~~-k~~t~~d~~-Gg~l~P~~~~~~i~~~~e~s~~l~~~~vi~~~~~~~~~i~~~g~~~~~~~g~ 77 (315) T protein:vir:41 1 MLT-IEDIRGGKPFEIV-PKIDVPDLG-RGVLSVDRFGEFVKAVRDSAVIIPEARIDNALKSYEKDISRLSLVLDVGPGR 77 (315) T ss_pred Ccc-cchhhcCChhhhh-hhcCCcCCC-CceechHHHHHHHHHHHhhhhhhhhceeeeccccccccccccccCccccccc Confidence 010 0011112222222 345676664 777999999999999999999999999864 45555655555555444 344 Q ss_pred CCCC---ccc-cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 82 KAGG---RFT-KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 82 t~t~---r~~-r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) +.++ +.+ ..+.+...+|.|++..+.++|+|+.|+.|+. .|+|++.+.+.+++++|.|+.+++|||.+.+.+ T Consensus 78 ~~~~~~~~~~~~~~~f~~~~l~~~~l~~~~~it~elL~D~~~---~~~~e~~l~~~~a~~~a~~~~~~~~nGdg~s~~-- 152 (315) T protein:vir:41 78 DETGQKLAPPESTAEVKTNTLYMREMVTKVVIHEDAIEDNIE---GKAFEQKIVTLLGEGISYVLEKYYLHGDTSSSD-- 152 (315) T ss_pred ccccCcCCCCCCccccceeeeceeeeeeeccccHHHHHhhhc---cccHHHHHHHHHHHHHHHHHHHHhhccCCcCcC-- Confidence 4332 222 2357888999999999999999999999996 689999999999999999999999999775433 Q ss_pred hhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhH Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAK 237 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~ 237 (341) |+ -..|+|||++++........ .++.++. ..| ++.|++.+|.++++++.+++|+||+++.++ ++-+ T Consensus 153 ----p~-~~~~~G~l~~a~~~~~~~~~------~~~a~~~-~~d-~l~~l~~sl~~~yr~~~~~~~~imn~~t~~-~~rk 218 (315) T protein:vir:41 153 ----PL-LRMSDGWLKLASEKLTESDV------DPEAEDW-PMN-LFDTMIESLPTPYRNNLPNMKFYVTWDIYR-AYRD 218 (315) T ss_pred ----cc-ccccccceeccccccccccc------ccccccc-cHH-HHHHHHHhcChHHhhcCCceEEEEcHHHHH-HHHH Confidence 32 23689999977654322111 1111111 123 455666666555555667999999999885 4666 Q ss_pred HHhccChhHHHHHHHHH-HHhhcCcccccCCcC-----CCCCEEEeccCCcEEEEecCcEEEEEEEcccccceecccc-- Q lcl|Aclame:pro 238 LYDKADKPSEQIAAQKL-DKTIAGRPAYVPPFL-----PDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTG-- 309 (341) Q Consensus 238 l~n~~~~ptE~~a~~~i-~k~igGlpa~~vPff-----P~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s-- 309 (341) +......+--.-..+.- ..+|.|+|++.+|.| |++.|++|.++||.+...++.+++... +++..++..|.. T Consensus 219 lk~~~g~~lw~~~~~~g~~~tl~G~PV~~~~~m~~~~~~~~~ilf~d~~nl~~~~~~~i~i~~~~-~a~~~~~~~~~~~r 297 (315) T protein:vir:41 219 ALKGRETGLGDQALTGANSILYDGRPVQYVPALEALNDGKSRALFVVPTQLVYGFWRNIKVVPDY-DAEMRLTKYVASLR 297 (315) T ss_pred HhccCCCccccchhhcCCCceecccceEecccccccCCCCccEEEecccceEEEeccccEEEeee-cCCCCceEEEEEEE Confidence 66443333111011111 247889999888776 678899999999988776664444333 344444544422 Q ss_pred ---ceeeccchheeeecc Q lcl|Aclame:pro 310 ---AWKVTQWVCWKRSPL 324 (341) Q Consensus 310 ---~YvVEdyg~~~~~~~ 324 (341) .|++|++.+++-..+ T Consensus 298 ~d~~~~~~~~~a~~~~~v 315 (315) T protein:vir:41 298 TDNHYEDEEGAVSATITV 315 (315) T ss_pred eceeEEeccceeEeeeeC Confidence 688999765555555 No 21 >protein:vir:4092 Length: 390 # NCBI annotation: major capsid protein a # Family: family:all:635 # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510986;swissprot:trembl:q8w604;genbank:gi:17488508;uniprot:Q8W604;genbank:GeneID:1260361 Probab=98.76 E-value=2.5e-09 Score=67.76 Aligned_cols=301 Identities=11% Similarity=0.005 Sum_probs=157.4 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) +...+.++-|+.++++.+.. + ...-.+.|-+.+.+.+++.+.+.|.++++++++++.--.+...... +++-+. T Consensus 68 ~~~~l~~~~r~~~~~~~~~~----~--~~~gg~lvP~~~~~~I~~~~~~~s~i~~~~~~~~~~~~~~~i~~~~-~~~~a~ 140 (390) T protein:vir:40 68 GANALTSDESKYYNEVIAGN----G--FAGVTALLPPTVFERVFEDLTVEHPLLSKINFVNTTATTEWIISVG-DVATAW 140 (390) T ss_pred CchhccHHHHHHHHHHHhcc----C--cccCcccccHHHHHHHHHHHHhhhhhhhhceeeecCCceeEEEEEc-CCccee Confidence 33345666677666554321 1 2223456777888999999999999999999999865333322222 222222 Q ss_pred CCCC-C-cc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 81 RKAG-G-RF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 81 rt~t-~-r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) -... + .. ...+.++...|.+++.--...|+.++|+.-. .++++.+++.+.++++.-.-.--++|+- ++ T Consensus 141 ~~~E~~~~~~~~~~~f~~i~l~~~k~~~~i~iS~ell~ds~-----~~l~~~i~~~la~~i~~~~~~a~l~G~G----~~ 211 (390) T protein:vir:40 141 WGPLCAEIKEVLDNGFDKIQTGMYKLSAYIPVCNAMLDLGP-----SWLDQYVRTILGEAMALGLEAGIVNGSG----KD 211 (390) T ss_pred eeccccccCccccccceeeEeeeeeEEEeehhhHHHHhcch-----HHHHHHHHHHHHHHHHHHHHhhhhcccC----CC Confidence 2221 1 11 1234667777888877777888888887444 5799999999999999888877888842 11 Q ss_pred hhhccchhhhhhhHHHHHHHhhccccccccceeecCC--chhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHH- Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETN--GDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAA- 234 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~g--gdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~- 234 (341) -| .|+|... .-+ +.+.....+. -.+.+...++..+...+.+...+..+..|++|.+.-..+. T Consensus 212 ---~P------~Gil~~~-----~~~-~~~~~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~a~~i~n~~t~~~~l 276 (390) T protein:vir:40 212 ---QP------IGMMRDL-----NNV-TAGEHPVKTATPLTDLTPATLATKVMLPLTDNGKKSVSDAILVINPADYWSKI 276 (390) T ss_pred ---cc------ceeeecc-----ccc-cccccccccccccchhhHHHHHHHHHHHhhcchhhhhcCceEEEcchhHHHHH Confidence 12 4665311 100 1111111112 2233333344443333222222334578999987532211 Q ss_pred -HhH-HHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcc--cccceecc--- Q lcl|Aclame:pro 235 -QAK-LYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHES--DRKRSKTH--- 307 (341) Q Consensus 235 -~~~-l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~--~r~rve~y--- 307 (341) ..+ +.+....+ + -.....|+|++.-+++|++.+++-.+++.-|+. ++..+-..-++. .++.+..+ T Consensus 277 ~~~~~~~d~~G~~---v----~~~~~~g~pvv~~~~~p~~~i~~Gd~s~~~i~~-~~~~~v~~~~~~~f~~~~~~~r~~~ 348 (390) T protein:vir:40 277 YAATSYMTPQGVW---V----TGILPVPLEIVQSVAVPVGKAVAGRAKDYFMGI-GSEQVIRTSTEYRLLDDETLYYAKQ 348 (390) T ss_pred HHHhhccCCCCcc---c----cccCCCceeEEEcCCCCCCcEEEEeeceEEEEe-ecceEEEecchhhhhcCcEEEEEEE Confidence 111 22222222 1 112356999999999999999999999876554 343332222111 11221111 Q ss_pred ccceeeccchheeeeccccccCCcchhcc-------cccCC Q lcl|Aclame:pro 308 TGAWKVTQWVCWKRSPLTTQKKSTSALNH-------RSERN 341 (341) Q Consensus 308 ~s~YvVEdyg~~~~~~~~~~~~~~~a~~~-------~~~~~ 341 (341) .-+..|-|-.+|....++..+ .++|+.- .+|-. T Consensus 349 r~dg~v~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 388 (390) T protein:vir:40 349 YANGRPKDNSSFLVFDITGLE-GSPAIDVNVVNNATPSETP 388 (390) T ss_pred EeCCEEecccceEEEEeeccC-CCCCCCcceeeCCCCCCCC Confidence 002222222334433444332 1222211 11111 No 22 >protein:vir:100247 Length: 425 # NCBI annotation: gp76 # Family: family:all:21 # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355412;genbank:gi:77864702;genbank:GeneID:3725969 Probab=98.64 E-value=7.2e-09 Score=65.22 Aligned_cols=302 Identities=11% Similarity=0.075 Sum_probs=163.4 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCc---hhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGV---SNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGL 77 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv---~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~ 77 (341) ....=..+.+..|..|+..--....+ ....-.|.|-+.+.+.+++.+++.+.+++.++++++....+. +-+..+++ T Consensus 105 ~~~~~~~~~~~af~~~l~~~e~~~al~~~t~~~gG~lvP~~~~~~ii~~~~~~s~l~~l~~~~~~~~~~~~-~~~~~~~~ 183 (425) T protein:vir:10 105 VKPLRDPEYTEAFKAHVKRGDVQAALNKGEDSEGGYLTPIEWDRTITNKLVLISPMRQLCRVQPVSKAGFS-KLFNMGGT 183 (425) T ss_pred ccccccHHHHHHHHHHhhhhhhHHHhhcCcCCCCceeccHhHHHHHHHHHHhhhhhhhhceeeeccCCceE-EEEEcCCc Confidence 12112344566788887543222221 122335667777788999999999999999999998765443 33334444 Q ss_pred cCCCCCCC-ccc-c-ccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccc Q lcl|Aclame:pro 78 YTGRKAGG-RFT-K-QVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEA 154 (341) Q Consensus 78 iagrt~t~-r~~-r-~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~ 154 (341) .+.-...+ ..+ . ...+....|.+++.---+.|+.+.|+... ++|+..+.+.+.+.++.=.-.--+||+- T Consensus 184 ~a~wv~E~~~~~~~~~~~f~~v~~~~~k~~~~i~iS~ell~ds~-----~~l~~~i~~~la~ai~~~~d~~~l~G~G--- 255 (425) T protein:vir:10 184 TSGWVGEASQRPQTNAATFQPLSFASGEIYANPAATQQILDDAE-----IDLESWLATEVQTEFAKQEGKAFLAGDG--- 255 (425) T ss_pred ceeeeccccccccccccccceeeeeheeeEeehHhHHHHHhcch-----hHHHHHHHHHHHHHHHHHHHhhhhcccC--- Confidence 44433222 112 1 13466677888887777888888887443 6899999999999999887777788842 Q ss_pred cCChhhccchhhhhhhHHHHHHHhhccccccccc---eeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHH Q lcl|Aclame:pro 155 DTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDV---YFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLI 231 (341) Q Consensus 155 ~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~---~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLl 231 (341) ++ + ..|+|...-.......-..+. +..++.+. .+.|.++ |++.+| ++.|+.. -+++|.+... T Consensus 256 -~~---~------p~Gil~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~l~-~l~~~l-~~~~~~~--a~~vmn~~~~ 320 (425) T protein:vir:10 256 -TN---K------PNGLLTYIAGGANAAKHPFGAIEVVNSGAAAD-ITSDGII-DLVYDL-PSAFTGN--ARFAMNRNTQ 320 (425) T ss_pred -CC---C------cceeeecccccccccccccccccccccccccc-ccHHHHH-HHHhhh-hhhhccC--CEEEEchHHH Confidence 11 2 336664322111111100111 11122222 2345444 666664 6677753 4889998866 Q ss_pred HHHHhHHH-hccChhHHHHHHH-HHHHhhcCcccccCCcCCC-----CCEEEeccCCcEEEEecCcEEEEEEEcccccce Q lcl|Aclame:pro 232 GAAQAKLY-DKADKPSEQIAAQ-KLDKTIAGRPAYVPPFLPD-----NAMVVTIPENLQVLTQHGTAQRKAKHESDRKRS 304 (341) Q Consensus 232 a~~~~~l~-n~~~~ptE~~a~~-~i~k~igGlpa~~vPffP~-----~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rv 304 (341) . ++..+ +....|--.-..+ .-..++-|+|++..++||+ ..|++=.+++.-..+.+...+.....--.++.+ T Consensus 321 ~--~L~~lkD~~G~~l~~~~~~~g~~~~l~G~PV~~~~~~p~~~~~~~~i~~Gd~~~~~~i~~~~~~~v~~d~~~~~~~~ 398 (425) T protein:vir:10 321 R--QVRKLKDGQGNYLWQPSYVAGQPATLAGYPVTEVPDMPDVAANSTPILFGDFQQTYLIIDRIGVRVLRDPYTAKPYV 398 (425) T ss_pred H--HHHHhhcCCCceeeccCccCCCCceecceeeEEecCcCCccCCccEEEEEehhccEEEEEecceEEEecccccCCcE Confidence 4 33333 3322331000000 0124788999999999995 347777788754445555554322111111211 Q ss_pred eccccceeec-cchh--eeeeccccccCCcch Q lcl|Aclame:pro 305 KTHTGAWKVT-QWVC--WKRSPLTTQKKSTSA 333 (341) Q Consensus 305 e~y~s~YvVE-dyg~--~~~~~~~~~~~~~~a 333 (341) .|..+ -+|+ .....|...+.+++= T Consensus 399 -----~~~~~~r~d~~v~~~~A~~~l~~~as~ 425 (425) T protein:vir:10 399 -----LFYTTKRVGGGLLNPEPMRAMKVAASE 425 (425) T ss_pred -----EEEEEEEeccEeecccceEEEEeeccC Confidence 34433 3332 222234333333222 No 23 >protein:vir:100135 Length: 418 # NCBI annotation: gp5 # Family: family:all:585 # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945035;genbank:gi:38707895;genbank:GeneID:2744182 Probab=98.54 E-value=5.2e-08 Score=60.51 Aligned_cols=300 Identities=8% Similarity=-0.051 Sum_probs=151.6 Q ss_pred CCccccHHHHHHHHHHH-------------HHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhcc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFA-------------QQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEG 67 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~-------------~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~G 67 (341) =.......-...|..+. .......+.......+.|-+.+.+.+.+.+.+.+.+++.++++++..-.+ T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvp~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~ 179 (418) T protein:vir:10 100 GQLVTESEEMKGMDGSARKSVRVRVDRKSIMNVPATVGSGVSGSNSLVVADRQAGIIAPPQRKMTIRDLLMPGQTSSSSI 179 (418) T ss_pred hHHhhhHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCccccchhHHHHHHHHHhhhhhHHhhcceeeccCCce Confidence 00000011111111111 11112222223344567888888999999999999999999999876555 Q ss_pred ceeecccccccCCCCCC-Cc-cccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHH Q lcl|Aclame:pro 68 QVVDVGVSGLYTGRKAG-GR-FTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRI 145 (341) Q Consensus 68 e~i~lgv~g~iagrt~t-~r-~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~I 145 (341) ..+.....++.++=+.. +. ....+.++...+.+++.---+.|+.+.|+.- ++|+..+.+.+.++++.-.-.- T Consensus 180 ~~~~~~~~~~~a~~v~E~~~~~~~~~~f~~v~~~~~k~~~~~~is~ell~ds------~~l~~~i~~~l~~a~~~~~d~a 253 (418) T protein:vir:10 180 EYTVETGFTNNAAAVAEGAQKPTSDLKFNLKNQPVRTIAHLFKASRQILDDA------PALQSYIDGRARYGLQLTEEGQ 253 (418) T ss_pred eEEEEecCCCceeeeccCccccccccceeeEEEeeeeEEEeehhhHHHHHhH------HHHHHHHHHHHHHHHHHHHHHH Confidence 55554332333322111 11 1223456777777777666677777777632 5799999999999998888888 Q ss_pred hhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEE Q lcl|Aclame:pro 146 GWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVF 225 (341) Q Consensus 146 GfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvi 225 (341) -|||+- |+ .+|. |.+... ...+...+..+..++|.+ .+++..+ .+.++.. -+++ T Consensus 254 ~l~G~g----~~--~~p~------Gi~~~~----------~~~~~~~~~~~~~~~~~i-~~~~~~~-~~~~~~~--~~~v 307 (418) T protein:vir:10 254 ILKGDG----TG--ANIL------GILPQA----------SAFMPSITLANATPIDKI-RLALLQA-VLAEFPA--TGIV 307 (418) T ss_pred HhccCC----CC--cccc------cccccc----------ccccccccccccccHHHH-HHHHHhh-ccccCCC--CEEE Confidence 889833 21 1232 444311 111111122222334433 2334434 3333332 2688 Q ss_pred eChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcE-EEEecCcEEEEEEEcccccce Q lcl|Aclame:pro 226 VGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQ-VLTQHGTAQRKAKHESDRKRS 304 (341) Q Consensus 226 vG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLs-IY~Q~gs~RR~~~d~~~r~rv 304 (341) |.+..... ...|-.....|-=.........++-|+|++..+++|++.+++-.+++.. |+...| ..=.+ +....+.+ T Consensus 308 ~n~~~~~~-L~~lkd~~G~~i~~~~~~~~~~~l~G~pV~~~~~~p~~~~~~gd~s~~~~~~~~~~-~~i~~-~~~~~~~f 384 (418) T protein:vir:10 308 LNPIDWAS-IELTKDSQGRYIVGNPVNGTTPRLWNLPVVETQAMTANEFLVGAFSMAAQIFDRME-IEVLL-STENVDDF 384 (418) T ss_pred EcHHHHHH-HHHhhcCCCceeccccccCCCceecceeeEEcCCCCCCcEEEeeccceEEEEEecc-eEEEE-ecccchhh Confidence 99886542 2223222222210000111245789999999999999999999998744 443333 22222 11111112 Q ss_pred eccccceeeccc-hh--eeeeccccccCCcchhc Q lcl|Aclame:pro 305 KTHTGAWKVTQW-VC--WKRSPLTTQKKSTSALN 335 (341) Q Consensus 305 e~y~s~YvVEdy-g~--~~~~~~~~~~~~~~a~~ 335 (341) ..-.-+|.++-+ ++ .....|..++.+++|-- T Consensus 385 ~~~~~~~r~~~~~d~~~~~~~a~~~~~~~~~~~g 418 (418) T protein:vir:10 385 EKNMVSIRAEERLALAVYRPESFVTGALVEQAGG 418 (418) T ss_pred hcCceEEEEEEeeccEEecccceEEEEeccCCCC Confidence 111124444432 22 12223333333333333 No 24 >protein:vir:81100 Length: 415 # NCBI annotation: capsid protein # Family: family:all:21 # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429874;genbank:gi:156603927;genbank:GeneID:5525320 Probab=98.49 E-value=6.9e-08 Score=59.85 Aligned_cols=304 Identities=10% Similarity=0.040 Sum_probs=162.8 Q ss_pred CCccccHHHHHHHHHHHHHHHHh--hCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc-cc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKS--YGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS-GL 77 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~--ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~-g~ 77 (341) +...+....+..|..++...... .++......+.|-..+...+.+.+.+.+.+++.+++++++...|.....-.+ +. T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (415) T protein:vir:81 97 QNTKVTSQEVRDFTEYLETRNDIQGGSLKTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVVRQSEVA 176 (415) T ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhccccccccccccchHHHHHHHHHHHhhhhhhhheeeeeccCCceeEEEEeecCCc Confidence 11112222333333333222111 1122223344455567889999999999999999999998887775443322 22 Q ss_pred cCCCCCCC-ccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccc Q lcl|Aclame:pro 78 YTGRKAGG-RFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEA 154 (341) Q Consensus 78 iagrt~t~-r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~ 154 (341) -+.-...+ ..+ ..+.++...+..++.---+.|+.++|+.-. .+|+..+.+.+.++++.-.-.--++|.-... T Consensus 177 ~~~~v~E~~~~~~~~~~~~~~v~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~~~~~~~~~~il~g~g~g~ 251 (415) T protein:vir:81 177 ALEKVEELEENPELAVKPFFQLAYDINTHRGYFRISREAIEDAK-----VNVLQELKLWMARTIAATRNKAIIDVITKGS 251 (415) T ss_pred cceeeccccccCcccccceeeEEeeeeeeEeeehhhHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHHHhhccccCc Confidence 22222221 111 123455666666665555778877776432 5788899999998887766666666643211 Q ss_pred cCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHH Q lcl|Aclame:pro 155 DTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAA 234 (341) Q Consensus 155 ~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~ 234 (341) .. ..- .++. -....+...+..+ .|.+ .+++..+.+++++. -+++|.++.+. T Consensus 252 ~~-------~~~--~~~~-----------~~~~~~~~~~~~~---~~~i-~~~~~~~~~~~~~~---~~~v~n~~~~~-- 302 (415) T protein:vir:81 252 TG-------STS--SGFE-----------KEGKKLEVKKAKS---LDDI-KDAINLNVKPNYEH---NVAIVSQTMFA-- 302 (415) T ss_pred cc-------ccc--cccc-----------ccccccccccccc---hhHH-HHHHHhhhhhccCC---CEEEEcHHHHH-- Confidence 11 100 0110 0011122223333 4443 36666665665543 47889998765 Q ss_pred HhHHHh-ccChhHHH-HHHHHHHHhhcCcccccCCcCCCCC-----EEEeccCCcEEEEecCcEEEEEEEcccccce-ec Q lcl|Aclame:pro 235 QAKLYD-KADKPSEQ-IAAQKLDKTIAGRPAYVPPFLPDNA-----MVVTIPENLQVLTQHGTAQRKAKHESDRKRS-KT 306 (341) Q Consensus 235 ~~~l~n-~~~~ptE~-~a~~~i~k~igGlpa~~vPffP~~~-----ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rv-e~ 306 (341) .+..+. ....|-=. ........++-|+|++..|++|... +++-.|+++.+.+.++..+=.+.+....... -- T Consensus 303 ~l~~lkd~~G~~l~~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~~~~~~Gd~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 382 (415) T protein:vir:81 303 KLDKMKDKLGNYLIQPDVKEKTQQRLLGAKIEILPDEVLGQKGNNTLIIGNLKDAIVLFDRSQYQASWTDYMHFGECLMI 382 (415) T ss_pred HHHHhhccCCceeeccCcCCCCCceecceeeEEecccccCCCCccEEEEEehhccEEEEeecceEEEEeccccCceEEEE Confidence 233332 22222100 0001112479999999999999765 8888999877666666555444332111110 00 Q ss_pred c-ccceeeccchheeeeccccccCCcchhcccc Q lcl|Aclame:pro 307 H-TGAWKVTQWVCWKRSPLTTQKKSTSALNHRS 338 (341) Q Consensus 307 y-~s~YvVEdyg~~~~~~~~~~~~~~~a~~~~~ 338 (341) | .-+..|-+..+|....++..+.+++-|-... T Consensus 383 ~~r~d~~v~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (415) T protein:vir:81 383 AVRQDCRILDYKSAIVIEYDDSERGEGDLGLEA 415 (415) T ss_pred EEEeccEEeccccEEEEEEeccCCCCCccccCC Confidence 0 1155566667777777777776666555443 No 25 >protein:vir:98339 Length: 415 # NCBI annotation: putative capsid protein # Family: family:all:21 # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918931;genbank:gi:119443693;genbank:GeneID:4594501 Probab=98.49 E-value=6.9e-08 Score=59.85 Aligned_cols=304 Identities=10% Similarity=0.040 Sum_probs=162.8 Q ss_pred CCccccHHHHHHHHHHHHHHHHh--hCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc-cc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKS--YGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS-GL 77 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~--ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~-g~ 77 (341) +...+....+..|..++...... .++......+.|-..+...+.+.+.+.+.+++.+++++++...|.....-.+ +. T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (415) T protein:vir:98 97 QNTKVTSQEVRDFTEYLETRNDIQGGSLKTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVVRQSEVA 176 (415) T ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhccccccccccccchHHHHHHHHHHHhhhhhhhheeeeeccCCceeEEEEeecCCc Confidence 11112222333333333222111 1122223344455567889999999999999999999998887775443322 22 Q ss_pred cCCCCCCC-ccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccc Q lcl|Aclame:pro 78 YTGRKAGG-RFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEA 154 (341) Q Consensus 78 iagrt~t~-r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~ 154 (341) -+.-...+ ..+ ..+.++...+..++.---+.|+.++|+.-. .+|+..+.+.+.++++.-.-.--++|.-... T Consensus 177 ~~~~v~E~~~~~~~~~~~~~~v~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~~~~~~~~~~il~g~g~g~ 251 (415) T protein:vir:98 177 ALEKVEELEENPELAVKPFFQLAYDINTHRGYFRISREAIEDAK-----VNVLQELKLWMARTIAATRNKAIIDVITKGS 251 (415) T ss_pred cceeeccccccCcccccceeeEEeeeeeeEeeehhhHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHHHhhccccCc Confidence 22222221 111 123455666666665555778877776432 5788899999998887766666666643211 Q ss_pred cCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHH Q lcl|Aclame:pro 155 DTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAA 234 (341) Q Consensus 155 ~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~ 234 (341) .. ..- .++. -....+...+..+ .|.+ .+++..+.+++++. -+++|.++.+. T Consensus 252 ~~-------~~~--~~~~-----------~~~~~~~~~~~~~---~~~i-~~~~~~~~~~~~~~---~~~v~n~~~~~-- 302 (415) T protein:vir:98 252 TG-------STS--SGFE-----------KEGKKLEVKKAKS---LDDI-KDAINLNVKPNYEH---NVAIVSQTMFA-- 302 (415) T ss_pred cc-------ccc--cccc-----------ccccccccccccc---hhHH-HHHHHhhhhhccCC---CEEEEcHHHHH-- Confidence 11 100 0110 0011122223333 4443 36666665665543 47889998765 Q ss_pred HhHHHh-ccChhHHH-HHHHHHHHhhcCcccccCCcCCCCC-----EEEeccCCcEEEEecCcEEEEEEEcccccce-ec Q lcl|Aclame:pro 235 QAKLYD-KADKPSEQ-IAAQKLDKTIAGRPAYVPPFLPDNA-----MVVTIPENLQVLTQHGTAQRKAKHESDRKRS-KT 306 (341) Q Consensus 235 ~~~l~n-~~~~ptE~-~a~~~i~k~igGlpa~~vPffP~~~-----ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rv-e~ 306 (341) .+..+. ....|-=. ........++-|+|++..|++|... +++-.|+++.+.+.++..+=.+.+....... -- T Consensus 303 ~l~~lkd~~G~~l~~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~~~~~~Gd~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 382 (415) T protein:vir:98 303 KLDKMKDKLGNYLIQPDVKEKTQQRLLGAKIEILPDEVLGQKGNNTLIIGNLKDAIVLFDRSQYQASWTDYMHFGECLMI 382 (415) T ss_pred HHHHhhccCCceeeccCcCCCCCceecceeeEEecccccCCCCccEEEEEehhccEEEEeecceEEEEeccccCceEEEE Confidence 233332 22222100 0001112479999999999999765 8888999877666666555444332111110 00 Q ss_pred c-ccceeeccchheeeeccccccCCcchhcccc Q lcl|Aclame:pro 307 H-TGAWKVTQWVCWKRSPLTTQKKSTSALNHRS 338 (341) Q Consensus 307 y-~s~YvVEdyg~~~~~~~~~~~~~~~a~~~~~ 338 (341) | .-+..|-+..+|....++..+.+++-|-... T Consensus 383 ~~r~d~~v~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (415) T protein:vir:98 383 AVRQDCRILDYKSAIVIEYDDSERGEGDLGLEA 415 (415) T ss_pred EEEeccEEeccccEEEEEEeccCCCCCccccCC Confidence 0 1155566667777777777776666555443 No 26 >protein:vir:79987 Length: 415 # NCBI annotation: head protein # Family: family:all:21 # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430002;genbank:gi:156604057;genbank:GeneID:5525447 Probab=98.49 E-value=6.9e-08 Score=59.85 Aligned_cols=304 Identities=10% Similarity=0.040 Sum_probs=162.8 Q ss_pred CCccccHHHHHHHHHHHHHHHHh--hCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc-cc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKS--YGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS-GL 77 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~--ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~-g~ 77 (341) +...+....+..|..++...... .++......+.|-..+...+.+.+.+.+.+++.+++++++...|.....-.+ +. T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (415) T protein:vir:79 97 QNTKVTSQEVRDFTEYLETRNDIQGGSLKTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVVRQSEVA 176 (415) T ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhccccccccccccchHHHHHHHHHHHhhhhhhhheeeeeccCCceeEEEEeecCCc Confidence 11112222333333333222111 1122223344455567889999999999999999999998887775443322 22 Q ss_pred cCCCCCCC-ccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccc Q lcl|Aclame:pro 78 YTGRKAGG-RFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEA 154 (341) Q Consensus 78 iagrt~t~-r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~ 154 (341) -+.-...+ ..+ ..+.++...+..++.---+.|+.++|+.-. .+|+..+.+.+.++++.-.-.--++|.-... T Consensus 177 ~~~~v~E~~~~~~~~~~~~~~v~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~~~~~~~~~~il~g~g~g~ 251 (415) T protein:vir:79 177 ALEKVEELEENPELAVKPFFQLAYDINTHRGYFRISREAIEDAK-----VNVLQELKLWMARTIAATRNKAIIDVITKGS 251 (415) T ss_pred cceeeccccccCcccccceeeEEeeeeeeEeeehhhHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHHHhhccccCc Confidence 22222221 111 123455666666665555778877776432 5788899999998887766666666643211 Q ss_pred cCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHH Q lcl|Aclame:pro 155 DTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAA 234 (341) Q Consensus 155 ~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~ 234 (341) .. ..- .++. -....+...+..+ .|.+ .+++..+.+++++. -+++|.++.+. T Consensus 252 ~~-------~~~--~~~~-----------~~~~~~~~~~~~~---~~~i-~~~~~~~~~~~~~~---~~~v~n~~~~~-- 302 (415) T protein:vir:79 252 TG-------STS--SGFE-----------KEGKKLEVKKAKS---LDDI-KDAINLNVKPNYEH---NVAIVSQTMFA-- 302 (415) T ss_pred cc-------ccc--cccc-----------ccccccccccccc---hhHH-HHHHHhhhhhccCC---CEEEEcHHHHH-- Confidence 11 100 0110 0011122223333 4443 36666665665543 47889998765 Q ss_pred HhHHHh-ccChhHHH-HHHHHHHHhhcCcccccCCcCCCCC-----EEEeccCCcEEEEecCcEEEEEEEcccccce-ec Q lcl|Aclame:pro 235 QAKLYD-KADKPSEQ-IAAQKLDKTIAGRPAYVPPFLPDNA-----MVVTIPENLQVLTQHGTAQRKAKHESDRKRS-KT 306 (341) Q Consensus 235 ~~~l~n-~~~~ptE~-~a~~~i~k~igGlpa~~vPffP~~~-----ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rv-e~ 306 (341) .+..+. ....|-=. ........++-|+|++..|++|... +++-.|+++.+.+.++..+=.+.+....... -- T Consensus 303 ~l~~lkd~~G~~l~~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~~~~~~Gd~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 382 (415) T protein:vir:79 303 KLDKMKDKLGNYLIQPDVKEKTQQRLLGAKIEILPDEVLGQKGNNTLIIGNLKDAIVLFDRSQYQASWTDYMHFGECLMI 382 (415) T ss_pred HHHHhhccCCceeeccCcCCCCCceecceeeEEecccccCCCCccEEEEEehhccEEEEeecceEEEEeccccCceEEEE Confidence 233332 22222100 0001112479999999999999765 8888999877666666555444332111110 00 Q ss_pred c-ccceeeccchheeeeccccccCCcchhcccc Q lcl|Aclame:pro 307 H-TGAWKVTQWVCWKRSPLTTQKKSTSALNHRS 338 (341) Q Consensus 307 y-~s~YvVEdyg~~~~~~~~~~~~~~~a~~~~~ 338 (341) | .-+..|-+..+|....++..+.+++-|-... T Consensus 383 ~~r~d~~v~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (415) T protein:vir:79 383 AVRQDCRILDYKSAIVIEYDDSERGEGDLGLEA 415 (415) T ss_pred EEEeccEEeccccEEEEEEeccCCCCCccccCC Confidence 0 1155566667777777777776666555443 No 27 >protein:vir:9410 Length: 415 # NCBI annotation: head protein # Family: family:all:21 # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803388;genbank:gi:29028700;genbank:GeneID:1258136 Probab=98.41 E-value=1.6e-07 Score=57.92 Aligned_cols=302 Identities=9% Similarity=0.042 Sum_probs=163.1 Q ss_pred CCccccHHHHHHHHHHHHHHH--HhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeec-ccccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLA--KSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDV-GVSGL 77 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A--~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~l-gv~g~ 77 (341) +.......-+..|..++.... ...+.....-.+.|-+.+...+++.+.+.+.+++.+++++++...|...-. ..+++ T Consensus 97 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (415) T protein:vir:94 97 QNTKVTSQEVRDFTEYLETRNDIQGGSLKTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVVRQSEVA 176 (415) T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhhccccccccccCcHHHHHHHHHHHHhhhhhhhhcceeeccCCceeEEEEeecCCc Confidence 111122222333443333222 111122223445555567889999999999999999999998777664333 22333 Q ss_pred cCCCCCC-Cccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccc Q lcl|Aclame:pro 78 YTGRKAG-GRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEA 154 (341) Q Consensus 78 iagrt~t-~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~ 154 (341) -+.-... +..+ ..+.++...+..++.---+.|+.+.|+.-. .+|+..+.+.+.++++.-.-.--++|.-... T Consensus 177 ~~~~v~Eg~~~~~~~~~~~~~i~~~~~k~~~~~~is~ell~ds~-----~~~~~~i~~~l~~~~~~~~~~~il~g~g~g~ 251 (415) T protein:vir:94 177 ALEKVEELEENPELAVKPFFQLAYDINTHRGYFRISREAIEDAK-----VNVLQELKLWMARTIAATRNKAIIDVITKGS 251 (415) T ss_pred cceeccccccccccccccceeeEeeheeeeeechhhHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHHHhhccccCc Confidence 3333222 2222 123456666666665555677777666322 5799999999999888777666677643221 Q ss_pred cCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHH Q lcl|Aclame:pro 155 DTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAA 234 (341) Q Consensus 155 ~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~ 234 (341) +.. ...++.. ....+...+..+|..| .+++..+.++.++. -+++|.+.... T Consensus 252 ~~~---------~~~~~~~-----------~~~~~~~~~~~~~~~i----~~~~~~~~~~~~~~---~~~vmn~~~~~-- 302 (415) T protein:vir:94 252 TGS---------TSSGFEK-----------EGKKLEVKKAKSLDDI----KDAINLNVKPNYEH---NVAIVSQTMFA-- 302 (415) T ss_pred ccc---------ccccccc-----------cccccccccccchHHH----HHHHHhhhhhccCC---CEEEEcHHHHH-- Confidence 110 0111110 0111222233445443 35566666665543 37888887654 Q ss_pred HhHHH-hccChhHHH-HHHHHHHHhhcCcccccCCcCCCCC-----EEEeccCCcEEEEecCcEEEEEEEcccccceecc Q lcl|Aclame:pro 235 QAKLY-DKADKPSEQ-IAAQKLDKTIAGRPAYVPPFLPDNA-----MVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTH 307 (341) Q Consensus 235 ~~~l~-n~~~~ptE~-~a~~~i~k~igGlpa~~vPffP~~~-----ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y 307 (341) .+..+ .....|-=. ........++-|+|++..|++|.+. +++-.|+++.+.+.++..+-...+. ..+.. .| T Consensus 303 ~l~~lkd~~G~~l~~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~~~i~~gd~~~~~~~~~~~~~~v~~~~~-~~~~~-~~ 380 (415) T protein:vir:94 303 KLDKMKDKLGNYLIQPDVKEKTQQRLLGAKIEILPDEVLGQKGNNTLIIGNLKDAIVLFDRSQYQASWTDY-MHFGE-CL 380 (415) T ss_pred HHHHhhccCCCeeeccCcCCCCCceecceeeEEecccccCCCCccEEEEEehhccEEEEeecceEEEEecc-ccCce-EE Confidence 33333 222222000 0000112478999999999999776 8888999976555555444333321 11111 11 Q ss_pred ----ccceeeccchheeeeccccccCCcchhcccc Q lcl|Aclame:pro 308 ----TGAWKVTQWVCWKRSPLTTQKKSTSALNHRS 338 (341) Q Consensus 308 ----~s~YvVEdyg~~~~~~~~~~~~~~~a~~~~~ 338 (341) .-+..|-+..||....++....+++-|-... T Consensus 381 r~~~r~d~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (415) T protein:vir:94 381 MIAVRQDCRILDYKSAIVIEYDDSERGEGDLGLEA 415 (415) T ss_pred EEEEEeccEEeccccEEEEEEeccCCCCCccccCC Confidence 1155566667788888887777766555444 No 28 >protein:vir:1328 Length: 392 # NCBI annotation: gp36 # Family: family:all:21 # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047927;swissprot:trembl:q9zwv6;genbank:gi:9631145;uniprot:Q9ZWV6;genbank:GeneID:2715889 Probab=98.30 E-value=1.6e-07 Score=57.84 Aligned_cols=295 Identities=13% Similarity=0.077 Sum_probs=146.3 Q ss_pred CCccc------cHHHHHHHHHHHH------------HHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhccc-ceec Q lcl|Aclame:pro 1 MSQIL------TQSAREYMDNFAQ------------QLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMI-TVTT 61 (341) Q Consensus 1 m~~~M------~~~tr~~~~~y~~------------~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~I-nv~~ 61 (341) ++... .+.....+.+|+. ......+....+. -.+-|++...++..+.+.+..|+.+ ++++ T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~~t~~~~g-~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 149 (392) T protein:vir:13 71 LSGLQGSGSGAQRSADHDDDAVLRAGNLGEARSFEFAPEKRDGTKAGNP-NVLSRTLYGQLIAQAVERSAIMRGGASTFT 149 (392) T ss_pred hcccCCcccchhhhhhHHHHHHHhccchhhhHHHHhhhhhhcccccCCC-ccccccchHHHHHHHHhhhhhhhhcceeee Confidence 00000 0000000111110 1111222222222 2366677777776666666666554 6665 Q ss_pred chhhccceeecccccccCCCCCC-Cc-cccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHh Q lcl|Aclame:pro 62 VDQIEGQVVDVGVSGLYTGRKAG-GR-FTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFA 139 (341) Q Consensus 62 V~~~~Ge~i~lgv~g~iagrt~t-~r-~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~a 139 (341) +..-..-.+-...+++-++=... +. ....+.++...|..++.---+.|+.+.|+... ++|+..+.+.+.+.++ T Consensus 150 ~~~~~~~~~~~~~~~~~a~~v~E~~~~~~~~~~f~~v~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~~i~ 224 (392) T protein:vir:13 150 TSDANPMDFTVITGRATAGIVGETAEIPESYPATTQRSMGGFKYGFASVVSYEFATDQV-----LDLVGFLVSDAGPAIG 224 (392) T ss_pred cCCCceeEEEEEcCCcceeeecccccccccccceeeEEeeeeeEEeeehhHHHHHhcch-----HHHHHHHHHHHHHHHH Confidence 54322233333333333332211 11 12234566667777776667888888888654 5899999999999887 Q ss_pred hhHHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccC Q lcl|Aclame:pro 140 LDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRND 219 (341) Q Consensus 140 lD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~ 219 (341) .=.-.--+||+- | ..| +|+|...- ..+. .+.. ...+....|.| .+++.+| ++.|+.. T Consensus 225 ~~~d~~~l~G~G----t---~~p------~Gil~~~~------~~~~-~~~~-~~~~~~~~d~l-~~~~~~l-~~~~~~~ 281 (392) T protein:vir:13 225 DAMGRHFLTGTG----T---GQP------RGILTDAT------GANA-AFGE-ADADSKVSDAL-IDLFHEV-PSAYRKN 281 (392) T ss_pred HHHHHHHhcccC----C---ccc------cccccccc------cccc-cccc-cccccccHHHH-HHHHHhh-hhhhhcC Confidence 655555566731 1 123 36653110 0001 1111 11222344544 3566654 6777764 Q ss_pred CCeEEEeChHHHHHHHhH-HHhccChhHHHHHHH-HHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEE Q lcl|Aclame:pro 220 PRLTVFVGSGLIGAAQAK-LYDKADKPSEQIAAQ-KLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKH 297 (341) Q Consensus 220 ~dLVvivG~dLla~~~~~-l~n~~~~ptE~~a~~-~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d 297 (341) -+++|.+..++ .+. |-+....|-=.-..+ .-..++.|+|++..+++|++.|++-.|+++-|... +..+-.... T Consensus 282 --a~~v~n~~~~~--~l~~lkd~~G~~l~~~~~~~g~~~~l~G~Pv~~~~~~~~~~i~~Gdf~~~~i~~~-~~~~i~~~~ 356 (392) T protein:vir:13 282 --AKFVVNDLRAA--QMRKLKDANGQYLWQSALTVGAPDTFNGKVVETDDGMPADKVLFADLSKYRVRFA-GSLRVDRSV 356 (392) T ss_pred --CEEEEcHHHHH--HHHHhhccCCceeecCCcCCCCCceecceeeEEcCCCCCCcEEEeeccceeEEee-cceEEEeec Confidence 37888888665 233 333322221000000 01247899999999999999999999998655433 333322221 Q ss_pred cccccceecccc-ceeecc-chhee--eeccccccCCcch Q lcl|Aclame:pro 298 ESDRKRSKTHTG-AWKVTQ-WVCWK--RSPLTTQKKSTSA 333 (341) Q Consensus 298 ~~~r~rve~y~s-~YvVEd-yg~~~--~~~~~~~~~~~~a 333 (341) ++ +-..+. +|..+. +||.. ...|...+.+++| T Consensus 357 ~~----~~~~~~~~~r~~~r~d~~~~~~~A~~~~~~~~aa 392 (392) T protein:vir:13 357 DA----KFSTDQIVYRFLQRADGLLVDARGAKVLTVTPAA 392 (392) T ss_pred cc----cccCCcEEEEEEEEeccEEecccceEEEEeeccC Confidence 21 111111 454443 44432 4457777777777 No 29 >protein:vir:4339 Length: 395 # NCBI annotation: major head protein # Family: family:all:585 # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061502;genbank:gi:9635591;genbank:GeneID:1262860 Probab=98.28 E-value=3.8e-07 Score=55.79 Aligned_cols=299 Identities=8% Similarity=-0.071 Sum_probs=147.9 Q ss_pred CCccccHHHHHHHHHHHHHHH------HhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeeccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLA------KSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGV 74 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A------~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv 74 (341) -.+......+..|..+..... ......+.+..+.|-|...+.+++.+.+.+.+++.++++++.--.+....... T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~ii~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 164 (395) T protein:vir:43 85 GQMVAESLKEQGVTSSLRGSHRVSMPRSAITSIDGSGGALVAPDRRPGVVAAPQRRLTIRDLVAPGTTESNSVEYVRETG 164 (395) T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCCCCccccchhhHHHHHHHHHhhhhHHhhccceecCCCceEEEEEec Confidence 000011111122222221111 11111223344668888999999999999999999999998654433333211 Q ss_pred ccccCCCCC-CC-ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccc Q lcl|Aclame:pro 75 SGLYTGRKA-GG-RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSA 152 (341) Q Consensus 75 ~g~iagrt~-t~-r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~ 152 (341) ..+.++-.. ++ .....+.++...+.+++.--.+.|+.+.|+. -++++..+.+.+++.++.-.-.--+||+- T Consensus 165 ~~~~a~~v~E~~~~~~~~~~~~~i~~~~~k~~~~~~is~ell~d------~~~l~~~v~~~la~a~~~~~d~~~l~G~g- 237 (395) T protein:vir:43 165 FVNNAAPVSEGTQKPYSDLTFELENAPVRTIAHLFKASRQILDD------ASALQSYIDARARYGLMLVEECQLLYGNG- 237 (395) T ss_pred CCCceeeecCCccccccccceeEEEEeeeeEEEeehhhHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHhccC- Confidence 111121111 11 1122345667778888777777787777653 25688889999999888876667778843 Q ss_pred cccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHH Q lcl|Aclame:pro 153 EADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIG 232 (341) Q Consensus 153 A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla 232 (341) + .+|. +|=+ ....... .. ..+.......+|. +.+++..+ ++.++.. -+++|.+.... T Consensus 238 ---~---~~~~-----~Gi~----~~~~~~~--~~--~~~~~~~~~~~~~-i~~~~~~~-~~~~~~~--~~~vmn~~~~~ 294 (395) T protein:vir:43 238 ---T---GANL-----HGII----PQAQAYA--PP--SGVVVTAEQRIDR-IRLAILQA-QLAEFPA--SGIVLNPIDWA 294 (395) T ss_pred ---C---CCcc-----cccc----ccccccc--cc--cccccccchhHHH-HHHHHHhh-ccccCCC--cEEEEcHHHHH Confidence 1 1221 1111 0000000 00 0111222223442 33444433 4445432 37889988654 Q ss_pred HHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceecccc-ce Q lcl|Aclame:pro 233 AAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTG-AW 311 (341) Q Consensus 233 ~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s-~Y 311 (341) . ...+-.....|-=.-....-..++-|+|++..+++|++.+++-.+++...++-++...=.+.++.. +-++ ++. +| T Consensus 295 ~-l~~lkd~~G~~i~~~~~~~~~~~l~G~pVv~~~~~~~~~~~~gd~~~~~~~~~~~~~~i~~~~~~~-~~f~-~~~~~~ 371 (395) T protein:vir:43 295 L-IELNKDAENRYIIGSPQNGTTPTLWRLPVVETQAITQDEFLTGAFSLGAQIFDRMDIEVLVSTEND-KDFE-NNMVTI 371 (395) T ss_pred H-HHHhhccCCceeccccccCCCceecceeeEEcCCCCCCcEEEEeccceEEEEEecceEEEEecccc-chhh-cCcEEE Confidence 2 222322222221000011113578899999999999999999999996544433332222222111 1111 122 55 Q ss_pred eecc-chhee--eeccccccCCcc Q lcl|Aclame:pro 312 KVTQ-WVCWK--RSPLTTQKKSTS 332 (341) Q Consensus 312 vVEd-yg~~~--~~~~~~~~~~~~ 332 (341) .+|- +|+.. ...|..++.+++ T Consensus 372 r~~~r~d~~v~~~~a~~~~~~taa 395 (395) T protein:vir:43 372 RAEERLAFAVYRPEAFVTGSLTAS 395 (395) T ss_pred EEEEeeccEEecccceEEEEeccC Confidence 5544 34332 333444444444 No 30 >protein:vir:4700 Length: 415 # NCBI annotation: phi PVL ORF 7 homologue # Family: family:all:21 # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061632;genbank:gi:9635719;genbank:GeneID:1262976 Probab=98.28 E-value=5.8e-07 Score=54.77 Aligned_cols=303 Identities=9% Similarity=0.031 Sum_probs=162.4 Q ss_pred CCccccHHHHHHHHHHHHHHHHhh--CchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeec-ccccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSY--GVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDV-GVSGL 77 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~n--gv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~l-gv~g~ 77 (341) +........+..|..+.......- ++....-.+.|-......+.+.+.+.+.+++.+++++++.-.|..... ..++. T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (415) T protein:vir:47 97 QNTKVTSQEVRDFTEYLETRNDIQGGSLKTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVVRQSEVA 176 (415) T ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhccccccCCcccccHHHHHHHHHHHHhhhhhhhhcceeeccCCceeEEEEEecCCc Confidence 111222233333444433222111 112222334455566788999999999999999999998877754332 22233 Q ss_pred cCCCCCCC-ccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccc Q lcl|Aclame:pro 78 YTGRKAGG-RFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEA 154 (341) Q Consensus 78 iagrt~t~-r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~ 154 (341) -++-...+ ..+ ..+.++...+..++.---+.|+.++|+.-. .+|+..+.+.+.++++.-.-.--++|.-... T Consensus 177 ~~~~v~Eg~~~~~~~~~~~~~v~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~~i~~~~d~~il~g~g~g~ 251 (415) T protein:vir:47 177 ALEKVEELEENPELAVKPFFQLAYDINTHRGYFRISREAIEDAK-----VNVLQELKLWMARTIAATRNKAIIDVITKGS 251 (415) T ss_pred ceeecccccccccccccceeeEEeeeeeeEeeehhhHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHHHhhccccCC Confidence 33333222 222 123566667777766666777777775432 5799999999999998877777777743111 Q ss_pred cCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHH Q lcl|Aclame:pro 155 DTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAA 234 (341) Q Consensus 155 ~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~ 234 (341) +. .. ..++.. ....+...+...|..| .+++..+.++++.. -+++|.++.++ T Consensus 252 ~~-------~~--~~~~~~-----------~~~~~~~~~~~~~~~i----~~~~~~~~~~~~~~---~~~v~n~~~~~-- 302 (415) T protein:vir:47 252 TG-------ST--SSGFEK-----------EGKKLEVKKAKSLDDI----KDAINLNVKPNYEH---NVAIVSQTMFA-- 302 (415) T ss_pred cc-------cc--cccccc-----------ccceeccccccchHHH----HHHHHhhhhhccCC---CEEEEcHHHHH-- Confidence 11 00 001100 0111222233444433 35666665665543 37889998765 Q ss_pred HhHHHh-ccChhHHH-HHHHHHHHhhcCcccccCCcCCCCC-----EEEeccCCcEEEEecCcEEEEEEEcccccceec- Q lcl|Aclame:pro 235 QAKLYD-KADKPSEQ-IAAQKLDKTIAGRPAYVPPFLPDNA-----MVVTIPENLQVLTQHGTAQRKAKHESDRKRSKT- 306 (341) Q Consensus 235 ~~~l~n-~~~~ptE~-~a~~~i~k~igGlpa~~vPffP~~~-----ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~- 306 (341) .+..+- ....|-=. ........++-|+|++..|++|... +++=.|+++.+.+.++...=...+.. .+.... T Consensus 303 ~L~~lkd~~G~~i~~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~v~~~~~~-~~~~~~~ 381 (415) T protein:vir:47 303 KLDKMKDKLGNYLIQPDVKEKTQQRLLGAKIEILPDEVLGQKGNNTLIIGNLKDAIVLFDRSQYQASWTDYM-HFGECLM 381 (415) T ss_pred HHHHhhccCCCeeeccCcCCCCCccccceeeEEeccccccCCCccEEEEEehhccEEEEeecceEEEeeccc-cCceEEE Confidence 344332 22122100 0001113579999999999999654 78888888765555444433332211 111100 Q ss_pred -c-ccceeeccchheeeeccccccCCcchhcccc Q lcl|Aclame:pro 307 -H-TGAWKVTQWVCWKRSPLTTQKKSTSALNHRS 338 (341) Q Consensus 307 -y-~s~YvVEdyg~~~~~~~~~~~~~~~a~~~~~ 338 (341) + .-+..|-+..+|..+.++..+.+.+-|-... T Consensus 382 ~~~r~d~~v~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (415) T protein:vir:47 382 IAVRQDCRILDYKSAIVIEYDDSERGEGDLGLEA 415 (415) T ss_pred EEEEeccEEeccccEEEEEeeccCCCCCCccCCC Confidence 0 1155555666777777777766665554443 No 31 >protein:vir:4600 Length: 415 # NCBI annotation: capsid protein # Family: family:all:21 # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058445;genbank:gi:9635171;genbank:GeneID:1262708 Probab=98.28 E-value=5.8e-07 Score=54.77 Aligned_cols=303 Identities=9% Similarity=0.031 Sum_probs=162.4 Q ss_pred CCccccHHHHHHHHHHHHHHHHhh--CchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeec-ccccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSY--GVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDV-GVSGL 77 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~n--gv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~l-gv~g~ 77 (341) +........+..|..+.......- ++....-.+.|-......+.+.+.+.+.+++.+++++++.-.|..... ..++. T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (415) T protein:vir:46 97 QNTKVTSQEVRDFTEYLETRNDIQGGSLKTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVVRQSEVA 176 (415) T ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhccccccCCcccccHHHHHHHHHHHHhhhhhhhhcceeeccCCceeEEEEEecCCc Confidence 111222233333444433222111 112222334455566788999999999999999999998877754332 22233 Q ss_pred cCCCCCCC-ccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccc Q lcl|Aclame:pro 78 YTGRKAGG-RFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEA 154 (341) Q Consensus 78 iagrt~t~-r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~ 154 (341) -++-...+ ..+ ..+.++...+..++.---+.|+.++|+.-. .+|+..+.+.+.++++.-.-.--++|.-... T Consensus 177 ~~~~v~Eg~~~~~~~~~~~~~v~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~~i~~~~d~~il~g~g~g~ 251 (415) T protein:vir:46 177 ALEKVEELEENPELAVKPFFQLAYDINTHRGYFRISREAIEDAK-----VNVLQELKLWMARTIAATRNKAIIDVITKGS 251 (415) T ss_pred ceeecccccccccccccceeeEEeeeeeeEeeehhhHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHHHhhccccCC Confidence 33333222 222 123566667777766666777777775432 5799999999999998877777777743111 Q ss_pred cCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHH Q lcl|Aclame:pro 155 DTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAA 234 (341) Q Consensus 155 ~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~ 234 (341) +. .. ..++.. ....+...+...|..| .+++..+.++++.. -+++|.++.++ T Consensus 252 ~~-------~~--~~~~~~-----------~~~~~~~~~~~~~~~i----~~~~~~~~~~~~~~---~~~v~n~~~~~-- 302 (415) T protein:vir:46 252 TG-------ST--SSGFEK-----------EGKKLEVKKAKSLDDI----KDAINLNVKPNYEH---NVAIVSQTMFA-- 302 (415) T ss_pred cc-------cc--cccccc-----------ccceeccccccchHHH----HHHHHhhhhhccCC---CEEEEcHHHHH-- Confidence 11 00 001100 0111222233444433 35666665665543 37889998765 Q ss_pred HhHHHh-ccChhHHH-HHHHHHHHhhcCcccccCCcCCCCC-----EEEeccCCcEEEEecCcEEEEEEEcccccceec- Q lcl|Aclame:pro 235 QAKLYD-KADKPSEQ-IAAQKLDKTIAGRPAYVPPFLPDNA-----MVVTIPENLQVLTQHGTAQRKAKHESDRKRSKT- 306 (341) Q Consensus 235 ~~~l~n-~~~~ptE~-~a~~~i~k~igGlpa~~vPffP~~~-----ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~- 306 (341) .+..+- ....|-=. ........++-|+|++..|++|... +++=.|+++.+.+.++...=...+.. .+.... T Consensus 303 ~L~~lkd~~G~~i~~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~v~~~~~~-~~~~~~~ 381 (415) T protein:vir:46 303 KLDKMKDKLGNYLIQPDVKEKTQQRLLGAKIEILPDEVLGQKGNNTLIIGNLKDAIVLFDRSQYQASWTDYM-HFGECLM 381 (415) T ss_pred HHHHhhccCCCeeeccCcCCCCCccccceeeEEeccccccCCCccEEEEEehhccEEEEeecceEEEeeccc-cCceEEE Confidence 344332 22122100 0001113579999999999999654 78888888765555444433332211 111100 Q ss_pred -c-ccceeeccchheeeeccccccCCcchhcccc Q lcl|Aclame:pro 307 -H-TGAWKVTQWVCWKRSPLTTQKKSTSALNHRS 338 (341) Q Consensus 307 -y-~s~YvVEdyg~~~~~~~~~~~~~~~a~~~~~ 338 (341) + .-+..|-+..+|..+.++..+.+.+-|-... T Consensus 382 ~~~r~d~~v~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (415) T protein:vir:46 382 IAVRQDCRILDYKSAIVIEYDDSERGEGDLGLEA 415 (415) T ss_pred EEEEeccEEeccccEEEEEeeccCCCCCCccCCC Confidence 0 1155555666777777777766665554443 No 32 >protein:vir:97053 Length: 390 # NCBI annotation: putative head protein # Family: family:all:585 # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453565;genbank:gi:84662600;genbank:GeneID:5142468 Probab=98.23 E-value=5.4e-07 Score=54.94 Aligned_cols=287 Identities=9% Similarity=-0.050 Sum_probs=144.8 Q ss_pred CCccccHHHHHHHHHHHHHHHHh------------hC---chhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhh Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKS------------YG---VSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQI 65 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~------------ng---v~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~ 65 (341) -.+... ...+.++....... +. ....+..+.|.|...+.+.+.+++.+.+++.++++++..- T Consensus 79 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lip~~~~~~ii~~~~~~~~i~~~~~~~~~~~~ 155 (390) T protein:vir:97 79 GDMFVA---SEQFQASTGRWNDRSARATMNIKAALNTASTDAAGSAGALTTPNRLPGFITPPDARLTVRDLIGSGRTDSA 155 (390) T ss_pred hhhhhh---hHHHHHHHHHhhhhhhhhhhHHHHHHHhhhcccccccccccchhhhHHHHHHHhhhhhhHhhcceeeccCC Confidence 000011 11112222111111 11 1122345568888999999999999999999999998754 Q ss_pred ccceeecccccccCCCCCC-Cc-cccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 66 EGQVVDVGVSGLYTGRKAG-GR-FTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIM 143 (341) Q Consensus 66 ~Ge~i~lgv~g~iagrt~t-~r-~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i 143 (341) ...........+-++-... +. ....+.++...+..++.--.+.|+.+.|+. -++++..+.+.+.+.++.-.- T Consensus 156 ~~~~~~~~~~~~~a~~v~Eg~~~~~~~~~~~~i~~~~~k~~~~~~is~ell~d------s~~l~~~i~~~la~a~~~~~d 229 (390) T protein:vir:97 156 LIEYVQETGFVNNAAIVAEGALKPESSLKFAKKTDTTHVIAHTMKATRQILSD------APQLASYMNNRLIRGLKVKED 229 (390) T ss_pred ceEEEEEecCCcceeeecCCccccccccceeEEEEeeeeEEEeehhhHHHHHh------HHHHHHHHHHHHHHHHHHHHH Confidence 4444443322222222211 11 112235566666666655556677666543 257899999999998888777 Q ss_pred HHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeE Q lcl|Aclame:pro 144 RIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLT 223 (341) Q Consensus 144 ~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLV 223 (341) .--|+|+- |+ .+| +|.+... . ........++. ..+| .+.+++..+ ++.++... + T Consensus 230 ~a~l~G~g----~~--~~p------~Gi~~~~----~----~~~~~~~~~~~--~~~d-~~~~~~~~~-~~~~~~~~--~ 283 (390) T protein:vir:97 230 AEILRGTG----AN--DGL------LGLIPQA----T----TYAAPTTIAGA--TRVD-QLRLAMLQA-SLAEYPAS--G 283 (390) T ss_pred HHHhhcCC----CC--ccc------cceeecc----c----ccccccccccc--chHH-HHHHHHHhh-ccccCCCC--E Confidence 77788832 21 112 2333210 0 00011111222 2234 344555544 44444322 6 Q ss_pred EEeChHHHHHHHhH-HHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCC-cEEEEecCcEEEEEEEcc-- Q lcl|Aclame:pro 224 VFVGSGLIGAAQAK-LYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPEN-LQVLTQHGTAQRKAKHES-- 299 (341) Q Consensus 224 vivG~dLla~~~~~-l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~N-LsIY~Q~gs~RR~~~d~~-- 299 (341) ++|.+..+. ++. |-.....|--.-.......++-|+|++..+++|++.+++-.+++ +-++.+.| ..=.+.+++ T Consensus 284 ~v~n~~~~~--~L~~lkd~~G~~l~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~gd~~~~~~~~~~~~-~~i~~~~~~~~ 360 (390) T protein:vir:97 284 IVINPIDWA--AIELAKDANNQYLIGNARGTLTPTLWGLPVVATQAMAPGEFLVGAFDLAAQIFDQWD-ARVEIGYVNDD 360 (390) T ss_pred EEEcHHHHH--HHHHhhcCCCceeecCccCCCCceecceeeEEcCCCCCCcEEEEeccceEEEEEecc-eEEEEeecccc Confidence 888887654 233 32222222110011122458999999999999999999999987 44444444 333333322 Q ss_pred -cccceecc-cc--ceeeccchheeeeccc Q lcl|Aclame:pro 300 -DRKRSKTH-TG--AWKVTQWVCWKRSPLT 325 (341) Q Consensus 300 -~r~rve~y-~s--~YvVEdyg~~~~~~~~ 325 (341) .++.+.-+ .. ++.|=+-.+|..++|- T Consensus 361 f~~~~~~~r~~~r~d~~v~~~~a~v~~~~a 390 (390) T protein:vir:97 361 FQRNMVTVLAEERLALVVYRPEALITGSFA 390 (390) T ss_pred cccCcEEEEEEEeeccEEeccccEEEEEeC Confidence 23332211 00 3333333344444443 No 33 >protein:vir:8102 Length: 543 # NCBI annotation: gp6 # Family: family:all:21 # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817683;genbank:gi:29566114;genbank:GeneID:1259308 Probab=98.23 E-value=2.8e-07 Score=56.49 Aligned_cols=295 Identities=9% Similarity=0.036 Sum_probs=150.2 Q ss_pred CCcccc-HHHHHHHHHHHHH---------------HHHhhCchhhcceeecChHHHHH-HHHHHHhhHHHhcccceecch Q lcl|Aclame:pro 1 MSQILT-QSAREYMDNFAQQ---------------LAKSYGVSNVAELFNVSPQLETK-LRAAITESAEFLKMITVTTVD 63 (341) Q Consensus 1 m~~~M~-~~tr~~~~~y~~~---------------~A~~ngv~~~~~~Fsv~P~~~q~-L~~~iqess~FL~~Inv~~V~ 63 (341) +++... ...+..+..++.. -+...++...+..+.|-+.+... +...+.+++.+.+..++++. T Consensus 212 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~e~~~~~~~~~~~~t~~~gg~lip~~~~~~ii~~~~~~~~~l~~~~~~~~~- 290 (543) T protein:vir:81 212 QCLATSSPAYLRAWSKMARNPHAAILTEEEKRAINEVRAMGLTKADGGYLVPFQLDPTVIITSNGSLNDIRRFARQVVA- 290 (543) T ss_pred hhhhhhhhhhhhHHHHHHHhhHHHHhhhhhhhhhhhhhhcccccccCcccCchhhhhHHHHHHHhhhchhhhhcccccC- Confidence 110000 1111112222110 01122233333344444555544 45677788888887777655 Q ss_pred hhccce-eecccccccCCCCCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhh Q lcl|Aclame:pro 64 QIEGQV-VDVGVSGLYTGRKAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFAL 140 (341) Q Consensus 64 ~~~Ge~-i~lgv~g~iagrt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~al 140 (341) .|.. +....+++.+.-...+ .....+.++...+..++.--.+.|+.+.|+ . -++|...|...+.+.++. T Consensus 291 --~g~~~~~~~~~~~~a~~v~Eg~~~~~~~~~~~~i~~~~~k~~~~~~is~ell~---d---~~~~~~~i~~~l~~~~~~ 362 (543) T protein:vir:81 291 --TGDVWHGVSSAAVQWSWDAEFEEVSDDSPEFGQPEIPVKKAQGFVPISIEALQ---D---EANVTETVALLFAEGKDE 362 (543) T ss_pred --CcceEEEEecCCcceeecccCccccccccccceeeeeeeeeEeeehhhHHHHh---c---cHHHHHHHHHHHHHHHHH Confidence 3432 2222233333322211 112234567777777777777888877765 3 268999999999999998 Q ss_pred hHHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceee-cCCchhhhHHHHHHHHHhcccchhhccC Q lcl|Aclame:pro 141 DIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFD-ETNGDYRTLDAMASDIINNQIHPMFRND 219 (341) Q Consensus 141 D~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~-g~ggdy~nLDalv~d~~~~li~~~~r~~ 219 (341) -.-.-.|||.- |. ..|. |.+.. ..... ...+.. .+.-.|..+.+| +.. +++.|+. T Consensus 363 ~~d~ail~G~G----t~--~~p~------Gi~~~----~~~~~--~~~~~~~~~~~~~~~~~~~----~~~-l~~~~~~- 418 (543) T protein:vir:81 363 LEAVTLTTGTG----QG--NQPT------GIVTA----LAGTA--AEIAPVTAETFALADVYAV----YEQ-LAARHRR- 418 (543) T ss_pred HHHHHHhccCC----CC--cccc------cchhh----ccccc--ccccccccccccHHHHHHH----HHh-hhccccC- Confidence 88788889832 11 1232 33221 11100 111111 222334444433 433 4666664 Q ss_pred CCeEEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCC----------EEEeccCCcEEEEecC Q lcl|Aclame:pro 220 PRLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNA----------MVVTIPENLQVLTQHG 289 (341) Q Consensus 220 ~dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~----------ilVT~l~NLsIY~Q~g 289 (341) .-+++|.+..+.. -..+-.....|-=.-.......++-|+|++..+++|.+. |++-.++++.|....| T Consensus 419 -~~~~v~n~~~~~~-l~~lkd~~G~~l~~~~~~g~~~~l~G~pv~~~~~~~~~~~~~~~~~~~~i~~gd~~~~~i~~~~~ 496 (543) T protein:vir:81 419 -QGAWLANNLIYNK-IRQFDTQGGAGLWTTIGNGEPSQLLGRPVGEAEAMDANWNTSASADNFVLLYGNFQNYVIADRIG 496 (543) T ss_pred -CcEEEEcHHHHHH-HHHhhcCCCceeccCcCCCCCccccceeeEEeccccccccccccCCcceEEEeeccceeEEeecc Confidence 4588999987652 122322222221000000012468899999999999875 7888998887776655 Q ss_pred cEEEEEEEcccccceecc--cc-ceeeccc-h--heeeeccccccCCcch Q lcl|Aclame:pro 290 TAQRKAKHESDRKRSKTH--TG-AWKVTQW-V--CWKRSPLTTQKKSTSA 333 (341) Q Consensus 290 s~RR~~~d~~~r~rve~y--~s-~YvVEdy-g--~~~~~~~~~~~~~~~a 333 (341) .. +.-.|+...-.++ +. +|.++-| | -.....|..++.+++| T Consensus 497 ~~---i~~~~~~~~~~~~~~~~~~~~~~~r~d~~v~~~~A~~~l~~~~~a 543 (543) T protein:vir:81 497 MT---VEFIPHLFGTNRRPNGSRGWFAYYRMGADVVNPNAFRLLNVETAS 543 (543) T ss_pred cE---EEEeccccccchhhcCceEEEEEEeeccEeecccceEEEEecccC Confidence 22 1222221111111 22 6666543 3 3455568888888888 No 34 >protein:vir:100172 Length: 394 # NCBI annotation: putative major head protein # Family: family:all:21 # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025031;genbank:gi:48697264;genbank:GeneID:2948270 Probab=98.21 E-value=1.3e-06 Score=52.91 Aligned_cols=287 Identities=9% Similarity=0.019 Sum_probs=151.6 Q ss_pred CCccccHHHHHHHHHHHHHHHH-----hhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAK-----SYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS 75 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~-----~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~ 75 (341) +........+..|..|+..... ..+..+..-.+.|-++..+.+.+.+.+.+.+++.+++++|....|.......+ T Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~gg~~vP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (394) T protein:vir:10 84 LKKKPIDAKKKAINDFIHSHGKVIDNAAGHVTSTEAGVLIPEEIIYDPTAEVNSVVDLSTLVTKTPVTTPKGTYPILKRA 163 (394) T ss_pred hhhhHHHHHHHHHHHHHhccchhhhhhhcccccccCceeccHHHHHHHHHHHHhhhhhhhhceeeeccCCceEEEEEecC Confidence 2222233445567776543221 11122223457787778899999999999999999999998777665544322 Q ss_pred cccCC-CCCCCccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccc Q lcl|Aclame:pro 76 GLYTG-RKAGGRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSA 152 (341) Q Consensus 76 g~iag-rt~t~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~ 152 (341) +.-+. -...+..+ ..+.++...+..++.---+.|+.++|+. + .++|+..+.+.+.+.++.-.-.--.+|..- T Consensus 164 ~~~~~~~~E~~~~~~~~~~~~~~v~l~~~k~~~~~~iS~ell~d-s----~~~l~~~i~~~la~~~~~~~~~~il~g~g~ 238 (394) T protein:vir:10 164 TDRFSSVAELAENPALAEPEFEQVDWSVSTYRGAIPLSEEAIAD-S----AVDLTSLVGQSINEKSVNTYNAMIAPVLQS 238 (394) T ss_pred CCccccccccccccccccccceeEEeeeeeeEeeehhHHHHHhh-h----hHHHHHHHHHHHHHHHHHHHHHHHhhcccc Confidence 22111 11112222 2234455555554443336666666653 2 368999999998888776433322333210 Q ss_pred cccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHH Q lcl|Aclame:pro 153 EADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIG 232 (341) Q Consensus 153 A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla 232 (341) ++. +........|.++ +++...+++.+. =+++|.+..+. T Consensus 239 ----------------------------------~~~--~~~~~~~~~d~l~-~~~~~~~~~~~~----a~~vmn~~~~~ 277 (394) T protein:vir:10 239 ----------------------------------FTA--KATTTDTLVDSLK-HILNVDLDPAYS----RALVVTQSLFN 277 (394) T ss_pred ----------------------------------ccc--ccccccccHHHHH-HHHHhhhhhhcc----CEEEecHHHHH Confidence 000 1112234556544 455556788774 27999998765 Q ss_pred HHHhHHHh-ccChh------HHHHHHHHHHHhhcCcccccCCcC--CCC----CEEEeccCCc-EEEEecCcEEEEEEEc Q lcl|Aclame:pro 233 AAQAKLYD-KADKP------SEQIAAQKLDKTIAGRPAYVPPFL--PDN----AMVVTIPENL-QVLTQHGTAQRKAKHE 298 (341) Q Consensus 233 ~~~~~l~n-~~~~p------tE~~a~~~i~k~igGlpa~~vPff--P~~----~ilVT~l~NL-sIY~Q~gs~RR~~~d~ 298 (341) .+..+. ....| ... .......++-|+|++.++.. |.. .+++-.|++. -++-+.+ .+-...++ T Consensus 278 --~l~~lkd~~G~~i~~~~~~~~-~~~~~~~~L~G~PV~~~~~~~~~~~~~~~~i~~gd~s~~~~~~~~~~-~~v~~~~~ 353 (394) T protein:vir:10 278 --TLDTLKDKNGRYLLHDASDSI-TDGTAKGTVLGVPVYVVGDALLGSAAGDQKAFVGDLKRGVLFADRQQ-VTLAWEDS 353 (394) T ss_pred --HHHHhhccCCCeeeecccccc-ccCCcccccccceeEEecccccCCCCCceEEEEeeccccEEEEeecc-eEEEEecc Confidence 344342 22222 000 00111247899999887643 322 2788888874 3443333 44344333 Q ss_pred cccccee-cc-ccceeeccchheeeeccccccCCcchhccc Q lcl|Aclame:pro 299 SDRKRSK-TH-TGAWKVTQWVCWKRSPLTTQKKSTSALNHR 337 (341) Q Consensus 299 ~~r~rve-~y-~s~YvVEdyg~~~~~~~~~~~~~~~a~~~~ 337 (341) ....+.- -| .-+..|-+-.++.-..++....+++|-.-| T Consensus 354 ~~~~~~~~~~~r~d~~~~~~~ai~~~~~~~~~~~~~~~~~~ 394 (394) T protein:vir:10 354 KIYGRYLGAAFRFGVKQADSNAGYFVTNTDAASGSTSGTGK 394 (394) T ss_pred cccceeEEEEEEeccEEeccccEEEEEeecccCCCCCCCCC Confidence 3322211 01 113444444556666666666666666666 No 35 >protein:vir:1886 Length: 385 # NCBI annotation: major capsid subunit precursor # Family: family:all:585 # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037666;genbank:gi:9634124;genbank:GeneID:1262513 Probab=98.19 E-value=4.1e-07 Score=55.59 Aligned_cols=296 Identities=8% Similarity=-0.038 Sum_probs=146.5 Q ss_pred CCccccH----HHHHHHHHHHHHHHHhh------------CchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchh Q lcl|Aclame:pro 1 MSQILTQ----SAREYMDNFAQQLAKSY------------GVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQ 64 (341) Q Consensus 1 m~~~M~~----~tr~~~~~y~~~~A~~n------------gv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~ 64 (341) +.-.... ..+...+.+....-... .....+....|-|.+...+++.+.+.+.+++.++++++.- T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~ii~~~~~~~~l~~~~~~~~~~~ 145 (385) T protein:vir:18 66 SGAENPGEKKSFSERAAEELIKSWDGKQGTFGAKTFNKSLGSDADSAGSLIQPMQIPGIIMPGLRRLTIRDLLAQGRTSS 145 (385) T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhccchhhHHHhhhccccccCCceecchhhhHHHHHhhhccchhhhcceecccC Confidence 0000101 11112222222111100 0111122344788889999999999999999999998875 Q ss_pred hccceeecccccccCCCCC-CCcc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhH Q lcl|Aclame:pro 65 IEGQVVDVGVSGLYTGRKA-GGRF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDI 142 (341) Q Consensus 65 ~~Ge~i~lgv~g~iagrt~-t~r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~ 142 (341) -.++.......++-+.-.. .+.. ...+.+....+..++.--.+.|+-+.|+.. ++++..+.+.+.+.++.-. T Consensus 146 ~~~~~~~~~~~~~~a~~v~E~~~~~~~~~~~~~~~~~~~k~~~~~~is~ell~d~------~~l~~~i~~~la~a~~~~~ 219 (385) T protein:vir:18 146 NALEYVREEVFTNNADVVAEKALKPESDITFSKQTANVKTIAHWVQASRQVMDDA------PMLQSYINNRLMYGLALKE 219 (385) T ss_pred cceEEEEEecCCcceeeeccCccccccccceeEEEEeeeeEEEeehhhHHHHhhH------HHHHHHHHHHHHHHHHHHH Confidence 5544444322222222111 1111 122456666777777666677776766532 5688889999999888765 Q ss_pred HHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCe Q lcl|Aclame:pro 143 MRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRL 222 (341) Q Consensus 143 i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dL 222 (341) -.--++|.- + .+|. +.|- ..+. .........++ ..+|. +.+++..+ .+.+++. - T Consensus 220 d~~~l~G~g----~---~~~~------~Gi~---~~~~-----~~~~~~~~~~~-~~~d~-i~~~~~~l-~~~~~~~--~ 273 (385) T protein:vir:18 220 EGQLLNGDG----T---GDNL------EGLN---KVAT-----AYDTSLNATGD-TRADI-IAHAIYQV-TESEFSA--S 273 (385) T ss_pred HHHHHhccC----C---CCcc------cccc---cccc-----ccccccccccc-chHHH-HHHHHHhh-ccccCCC--C Confidence 555667721 1 1121 1110 0000 01111122222 34553 33444433 4555443 2 Q ss_pred EEEeChHHHHHHHhHHH-hccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCC-cEEEEecCcEEEEEEEccc Q lcl|Aclame:pro 223 TVFVGSGLIGAAQAKLY-DKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPEN-LQVLTQHGTAQRKAKHESD 300 (341) Q Consensus 223 VvivG~dLla~~~~~l~-n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~N-LsIY~Q~gs~RR~~~d~~~ 300 (341) +++|.+..+. .+..+ .....|-=......-..++-|+|++..+++|++.+++-.+++ .-|+.+.|.. =.+.+ .. T Consensus 274 ~~~~~~~~~~--~l~~lkd~~G~~l~~~~~~~~~~~l~G~pV~~~~~~p~~~~~~gd~~~~~~~~~~~~~~-v~~~~-~~ 349 (385) T protein:vir:18 274 GIVLNPRDWH--NIALLKDNEGRYIFGGPQAFTSNIMWGLPVVPTKAQAAGTFTVGGFDMASQVWDRMDAT-VEVSR-ED 349 (385) T ss_pred EEEEcHHHHH--HHHHhhcCCCceeccCcccCCCceecceeeEEcCcCCCCcEEEeecccEEEEEEecceE-EEEec-cc Confidence 7889988655 23333 222222100001112357889999999999999999999986 5555554422 11111 11 Q ss_pred ccceecccc-ceeecc-ch--heeeeccccccCCcch Q lcl|Aclame:pro 301 RKRSKTHTG-AWKVTQ-WV--CWKRSPLTTQKKSTSA 333 (341) Q Consensus 301 r~rve~y~s-~YvVEd-yg--~~~~~~~~~~~~~~~a 333 (341) .+-+. ++. +|.++- +| ......|..++.+++| T Consensus 350 ~~~~~-~~~~~~~~~~r~~~~v~~~~a~~~~~~~aa~ 385 (385) T protein:vir:18 350 RDNFV-KNMLTILCEERLALAHYRPTAIIKGTFSSGS 385 (385) T ss_pred cchhh-cCcEEEEEEEeeccEEecccceEEEEeccCC Confidence 11111 111 444433 33 2333345555556666 No 36 >protein:vir:191 Length: 385 # NCBI annotation: major head subunit precursor # Family: family:all:585 # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037701;genbank:gi:9634158;genbank:GeneID:1262530 Probab=98.19 E-value=4.1e-07 Score=55.59 Aligned_cols=296 Identities=8% Similarity=-0.038 Sum_probs=146.5 Q ss_pred CCccccH----HHHHHHHHHHHHHHHhh------------CchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchh Q lcl|Aclame:pro 1 MSQILTQ----SAREYMDNFAQQLAKSY------------GVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQ 64 (341) Q Consensus 1 m~~~M~~----~tr~~~~~y~~~~A~~n------------gv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~ 64 (341) +.-.... ..+...+.+....-... .....+....|-|.+...+++.+.+.+.+++.++++++.- T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~ii~~~~~~~~l~~~~~~~~~~~ 145 (385) T protein:vir:19 66 SGAENPGEKKSFSERAAEELIKSWDGKQGTFGAKTFNKSLGSDADSAGSLIQPMQIPGIIMPGLRRLTIRDLLAQGRTSS 145 (385) T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhccchhhHHHhhhccccccCCceecchhhhHHHHHhhhccchhhhcceecccC Confidence 0000101 11112222222111100 0111122344788889999999999999999999998875 Q ss_pred hccceeecccccccCCCCC-CCcc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhH Q lcl|Aclame:pro 65 IEGQVVDVGVSGLYTGRKA-GGRF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDI 142 (341) Q Consensus 65 ~~Ge~i~lgv~g~iagrt~-t~r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~ 142 (341) -.++.......++-+.-.. .+.. ...+.+....+..++.--.+.|+-+.|+.. ++++..+.+.+.+.++.-. T Consensus 146 ~~~~~~~~~~~~~~a~~v~E~~~~~~~~~~~~~~~~~~~k~~~~~~is~ell~d~------~~l~~~i~~~la~a~~~~~ 219 (385) T protein:vir:19 146 NALEYVREEVFTNNADVVAEKALKPESDITFSKQTANVKTIAHWVQASRQVMDDA------PMLQSYINNRLMYGLALKE 219 (385) T ss_pred cceEEEEEecCCcceeeeccCccccccccceeEEEEeeeeEEEeehhhHHHHhhH------HHHHHHHHHHHHHHHHHHH Confidence 5544444322222222111 1111 122456666777777666677776766532 5688889999999888765 Q ss_pred HHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCe Q lcl|Aclame:pro 143 MRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRL 222 (341) Q Consensus 143 i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dL 222 (341) -.--++|.- + .+|. +.|- ..+. .........++ ..+|. +.+++..+ .+.+++. - T Consensus 220 d~~~l~G~g----~---~~~~------~Gi~---~~~~-----~~~~~~~~~~~-~~~d~-i~~~~~~l-~~~~~~~--~ 273 (385) T protein:vir:19 220 EGQLLNGDG----T---GDNL------EGLN---KVAT-----AYDTSLNATGD-TRADI-IAHAIYQV-TESEFSA--S 273 (385) T ss_pred HHHHHhccC----C---CCcc------cccc---cccc-----ccccccccccc-chHHH-HHHHHHhh-ccccCCC--C Confidence 555667721 1 1121 1110 0000 01111122222 34553 33444433 4555443 2 Q ss_pred EEEeChHHHHHHHhHHH-hccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCC-cEEEEecCcEEEEEEEccc Q lcl|Aclame:pro 223 TVFVGSGLIGAAQAKLY-DKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPEN-LQVLTQHGTAQRKAKHESD 300 (341) Q Consensus 223 VvivG~dLla~~~~~l~-n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~N-LsIY~Q~gs~RR~~~d~~~ 300 (341) +++|.+..+. .+..+ .....|-=......-..++-|+|++..+++|++.+++-.+++ .-|+.+.|.. =.+.+ .. T Consensus 274 ~~~~~~~~~~--~l~~lkd~~G~~l~~~~~~~~~~~l~G~pV~~~~~~p~~~~~~gd~~~~~~~~~~~~~~-v~~~~-~~ 349 (385) T protein:vir:19 274 GIVLNPRDWH--NIALLKDNEGRYIFGGPQAFTSNIMWGLPVVPTKAQAAGTFTVGGFDMASQVWDRMDAT-VEVSR-ED 349 (385) T ss_pred EEEEcHHHHH--HHHHhhcCCCceeccCcccCCCceecceeeEEcCcCCCCcEEEeecccEEEEEEecceE-EEEec-cc Confidence 7889988655 23333 222222100001112357889999999999999999999986 5555554422 11111 11 Q ss_pred ccceecccc-ceeecc-ch--heeeeccccccCCcch Q lcl|Aclame:pro 301 RKRSKTHTG-AWKVTQ-WV--CWKRSPLTTQKKSTSA 333 (341) Q Consensus 301 r~rve~y~s-~YvVEd-yg--~~~~~~~~~~~~~~~a 333 (341) .+-+. ++. +|.++- +| ......|..++.+++| T Consensus 350 ~~~~~-~~~~~~~~~~r~~~~v~~~~a~~~~~~~aa~ 385 (385) T protein:vir:19 350 RDNFV-KNMLTILCEERLALAHYRPTAIIKGTFSSGS 385 (385) T ss_pred cchhh-cCcEEEEEEEeeccEEecccceEEEEeccCC Confidence 11111 111 444433 33 2333345555556666 No 37 >protein:vir:6212 Length: 434 # NCBI annotation: prohead protease # Family: family:all:21 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852592;genbank:gi:31415852;genbank:GeneID:1489210 Probab=98.17 E-value=6e-07 Score=54.69 Aligned_cols=291 Identities=11% Similarity=0.039 Sum_probs=148.8 Q ss_pred CCc---cccHHHHHHHHHHHHHH-----HHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeec Q lcl|Aclame:pro 1 MSQ---ILTQSAREYMDNFAQQL-----AKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDV 72 (341) Q Consensus 1 m~~---~M~~~tr~~~~~y~~~~-----A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~l 72 (341) |.. .-..+-|..|..|+... +...++....-.|.|-+.+.+.+++.+.+.+.+.+..+++++.- +-++-+ T Consensus 112 ~~~~~~~~~~e~r~a~~~~l~~~~~~~e~~a~~~~t~~GG~lvP~~~~~~Ii~~l~~~~~i~~~~~~~~~~~--~~~~p~ 189 (434) T protein:vir:62 112 TKGHRTNKETEIRSVFANYIVGNIDEKEARALGLVTGNGSVTIPDFLSKEIITYAQEENFLRRLGTGVKTKE--NIKYPV 189 (434) T ss_pred hccccchHHHHHHHHHHHHhccccchhhhhhhcccccccceecchhhHHHHHHhhhhhhhhhhhcceeccCC--ceEEEE Confidence 110 01123355566665421 22223333334576777778889999999999998888877641 212222 Q ss_pred ccccccCCCC-----CCCccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhh Q lcl|Aclame:pro 73 GVSGLYTGRK-----AGGRFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGW 147 (341) Q Consensus 73 gv~g~iagrt-----~t~r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGf 147 (341) -..++.++-. .+......+.++...+.+++.---+.|+.++|+.-. .+|++.+.+.+.++++.-.-.--+ T Consensus 190 ~~~~~~a~~~~~~~e~~~~~~~~~~f~~v~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~la~~~~~~~d~~~l 264 (434) T protein:vir:62 190 LVKKAEAQGHKNERTNNEMPETDIEFDEIELSPTEFDALATVTKKLLARTG-----LPIEQIVMDELKKAYVRKETQYMV 264 (434) T ss_pred EecCCcccceecccccccccccccceeeEEeeheeeEeehhhHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHHh Confidence 2222222111 111111223455555655554444666666665432 589999999999999887777777 Q ss_pred ccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeC Q lcl|Aclame:pro 148 NGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVG 227 (341) Q Consensus 148 nG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG 227 (341) ||+-. .+|.. | +++...+...+.+. ...|.+ .+++.++ ++.|+. .-+++|. T Consensus 265 ~G~G~-------~~~~~-----g------------~~~~~~~~~~~~~~-~~~d~l-~~l~~~l-~~~~~~--~a~~v~n 315 (434) T protein:vir:62 265 NGDEA-------NNIND-----G------------ALAKKAVEFKTDEK-NLYDAL-VKMKNTP-VKEVRK--KARWVLN 315 (434) T ss_pred ccCCC-------Ccccc-----c------------eeeccccccccccc-chhhHH-HHHHhhc-chhhhc--CCEEEEc Confidence 88432 22211 1 11111121111111 234433 3556554 666664 4488999 Q ss_pred hHHHHHHHhHHH-hccChhH--HH-HHHHHHHHhhcCcccccCCcCCCCC------EEEeccCCcEEEEecCcEEEEEEE Q lcl|Aclame:pro 228 SGLIGAAQAKLY-DKADKPS--EQ-IAAQKLDKTIAGRPAYVPPFLPDNA------MVVTIPENLQVLTQHGTAQRKAKH 297 (341) Q Consensus 228 ~dLla~~~~~l~-n~~~~pt--E~-~a~~~i~k~igGlpa~~vPffP~~~------ilVT~l~NLsIY~Q~gs~RR~~~d 297 (341) +..+. +++.+ .....|- +. .+......++-|+|++..+++|... |++=.|+..-|+-..|...-.... T Consensus 316 ~~~~~--~L~~lkd~~G~~l~~~~~~~~~g~~~tl~G~pV~~~~~~~~~~~~~~~~i~~Gdfs~~~i~~~~g~~~i~~~~ 393 (434) T protein:vir:62 316 TAALT--KIETMKTDDGFPLLRPFNQAEGGIGYTLLGFPVEEEDAIDIPDSPDTPVFYFGDFSKFYIQDVIGSLEVQKLV 393 (434) T ss_pred HHHHH--HHHHhhccCCCEeeccCCCccCCCCceecceeeEEecCccCccCCCceEEEEeeccceEEEEeeceeEEEeeh Confidence 88765 34433 2222221 00 0000112368899999999999765 555566655555444433222111 Q ss_pred cccccceecccc-ceeeccc--hhee--eecccc----ccCCcch Q lcl|Aclame:pro 298 ESDRKRSKTHTG-AWKVTQW--VCWK--RSPLTT----QKKSTSA 333 (341) Q Consensus 298 ~~~r~rve~y~s-~YvVEdy--g~~~--~~~~~~----~~~~~~a 333 (341) ..+...+. +|.++.+ |++. ..+... +|.|++| T Consensus 394 ----~~~~~~~~v~~~~~~r~Dgk~i~~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:62 394 ----ELFSRTNRVGFRIWNLLDAQLIHSPFEVPVYKYVLKAPTGA 434 (434) T ss_pred ----hhhcccCceEEEEEeeecceeecCcccceEEEEEeccCCCC Confidence 11212222 6777774 4444 222222 3556666 No 38 >protein:vir:2504 Length: 305 # NCBI annotation: major capsid subunit gp9 # Family: family:all:507 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569745;genbank:gi:18496895;genbank:GeneID:932268 Probab=98.16 E-value=1e-06 Score=53.36 Aligned_cols=278 Identities=10% Similarity=0.025 Sum_probs=153.8 Q ss_pred hhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCCC-------ccccccCCCC Q lcl|Aclame:pro 23 SYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAGG-------RFTKQVGVGG 95 (341) Q Consensus 23 ~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t~-------r~~r~~~l~~ 95 (341) ........-.+.|-+++.+.+.+.+++.+.+++.++++++.--. .++-.-.+++-++-...+ .....+.++. T Consensus 1 ma~~t~~~gg~liP~~~~~~Ii~~~~~~s~l~~l~~~~~~~~~~-~~~p~~~~~~~a~wv~E~~~~~~~~~~~s~~~f~~ 79 (305) T protein:vir:25 1 MADISRAEVASLIQEAYSDTLLAAAKQGSTVLSAFQNVNMGTKT-THLPVLATLPEADWVGESATDPKGVKPTSKVTWAN 79 (305) T ss_pred CCCccCCccceecCHHHHHHHHHHHHhhchhhhhcceeeccCCc-EEEEEEeCCcceEEeecccccccccccccccceee Confidence 22222333456788888899999999999999999999886332 222222223333222111 1122345666 Q ss_pred cceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHH Q lcl|Aclame:pro 96 HKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFV 175 (341) Q Consensus 96 ~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~ 175 (341) ..+..++.---+.|+.+.|+.-. ++|+..+++.+.++++.-.-.-.|||+-. .+... +.+.+.. T Consensus 80 i~~~~~k~~~~~~is~ell~ds~-----~~~~~~i~~~l~~~~a~~~d~a~~~G~g~--~~~~~--------~~~~~~~- 143 (305) T protein:vir:25 80 RTLVAEEIAVIIPVHENVIDDAT-----VAVLTEVAELGGQAIGKKLDQAVIFGTDK--PASWV--------SPALIPA- 143 (305) T ss_pred EEeeeEEEEEeehhhHHHHhcch-----HHHHHHHHHHHHHHHHHHHhhhheeccCC--CCCcc--------ccccccc- Confidence 67777777777888888776433 68999999999999999999999999641 11110 0010000 Q ss_pred HHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHHhccChhHHHHHHHHH- Q lcl|Aclame:pro 176 KNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKL- 254 (341) Q Consensus 176 Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i- 254 (341) ...........+....+.++...+..+...+....+... .++|.+...+.- ..|-.....| +. T Consensus 144 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~l-~~lkd~~G~~-------i~~ 207 (305) T protein:vir:25 144 -----AVTAGQAVEVVGGVANESDIVGATNRAAKAVASAGWAPD---TLLSSLALRYEV-ANIRDANGNP-------VFR 207 (305) T ss_pred -----cccccccccccccchhhhHHHHHHHHHHHhhhhcccccc---eeEecHHHHHHH-HHhhccCCce-------eec Confidence 000001111222233344444444444433322222221 377777765531 2232222222 11 Q ss_pred HHhhcCcccccCCcCCCC----CEEEeccCCcEEEEecCcEEEEEEEc----ccccceecccc-----------ceeecc Q lcl|Aclame:pro 255 DKTIAGRPAYVPPFLPDN----AMVVTIPENLQVLTQHGTAQRKAKHE----SDRKRSKTHTG-----------AWKVTQ 315 (341) Q Consensus 255 ~k~igGlpa~~vPffP~~----~ilVT~l~NLsIY~Q~gs~RR~~~d~----~~r~rve~y~s-----------~YvVEd 315 (341) ..++-|+|++..+++|.. .+++-.++++.|..+.|- +-.+.++ .....+.-|++ ++.|-+ T Consensus 208 ~~~l~G~Pv~~~~~~~~~~~~~~~~~gd~s~~~i~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~R~~~r~~~~v~~ 286 (305) T protein:vir:25 208 DDSFAGFRTFFNRNGAWDADAAIEVIADSSRVKIGVRQDI-TVKFLDQATLGTGENQINLAERDMVALRLKARFAYVLGV 286 (305) T ss_pred CCcccccceEEcCccCCCCCccEEEEEecceEEEEEecCe-EEEEeeeeeeecCCceeeeeecCcEEEEEEEeecceeeC Confidence 247999999999998754 588889999877666653 2222111 12222222221 455555 Q ss_pred chheeeeccccccCCcchh Q lcl|Aclame:pro 316 WVCWKRSPLTTQKKSTSAL 334 (341) Q Consensus 316 yg~~~~~~~~~~~~~~~a~ 334 (341) -.++....++.++.-+||. T Consensus 287 p~a~v~~~~~~~~~~~pa~ 305 (305) T protein:vir:25 287 SATAQGANKTPVAVVAPAA 305 (305) T ss_pred cccEEEEccccccccCCCC Confidence 5667777766665556766 No 39 >protein:vir:94771 Length: 298 # NCBI annotation: major head protein # Family: family:all:966 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996706;genbank:gi:45597421;genbank:GeneID:2769044 Probab=98.14 E-value=2.5e-07 Score=56.80 Aligned_cols=281 Identities=10% Similarity=-0.005 Sum_probs=157.0 Q ss_pred HHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCCC--ccccccCCCCcc Q lcl|Aclame:pro 20 LAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAGG--RFTKQVGVGGHK 97 (341) Q Consensus 20 ~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t~--r~~r~~~l~~~~ 97 (341) ||- +..+.|-|...+.+.+.++++|.+++..+++++.--. -++-.-.+++-++-...+ .....+.++..+ T Consensus 1 ma~-------~gG~lip~~~~~~ii~~~~~~s~i~~~~~~~~~~~~~-~~~p~~~~~~~a~~v~Eg~~~~~~~~~f~~v~ 72 (298) T protein:vir:94 1 MVL-------NKGTLFDPELVTDLISKVAGKSSIARLSAQKPIPFNG-EKVFTFTMDSEIDVVAESGKKTHGGVTLAPQT 72 (298) T ss_pred Cee-------ccccccChhHHHHHHHHHHhhchhhhhcceeeccCCc-eEEEEEecCcceEEeeCCccccccccceeEEE Confidence 222 2345677888999999999999999999999876522 233232233334333222 112234566777 Q ss_pred eEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHH Q lcl|Aclame:pro 98 YKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKN 177 (341) Q Consensus 98 Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re 177 (341) ..+++.---+.|+.+.|.+.... ..+|.+.+.+.++++++.....--+||+....-++.. +. ..-++.... T Consensus 73 l~~~k~~~~~~iS~ell~~~~~~--~~~l~~~i~~~la~ai~~~~d~~~l~G~~~~~g~~~~----~~-~~~~~~~~~-- 143 (298) T protein:vir:94 73 MVPIKVEYGARISDEFMYASDEE--KINILQAFNDGFAKKVARGIDLMAFHGVNPRLGTASA----VI-GTNHFDSKV-- 143 (298) T ss_pred EeeeEEEEeeehhHHHhccCCcc--HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcccc----cc-ccccccccc-- Confidence 77777777788888888554432 4679999999999999988888888985322111111 00 000111110 Q ss_pred hhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHHhccChhHHHHHHH-HHHH Q lcl|Aclame:pro 178 RKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQ-KLDK 256 (341) Q Consensus 178 ~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~-~i~k 256 (341) + ..+..++.+ ..++..+.+++..+... +++ +. +++|.+...+. ...|-.....|-=.-..+ .-.. T Consensus 144 -------~-~~~~~~~~~--~~~~~~i~~~~~~~~~~-~~~-~~-~~vmn~~~~~~-l~~lkd~~G~~l~~~~~~~~~~~ 209 (298) T protein:vir:94 144 -------T-QKVEAPRGI--ADPNGAIENAVELLTGV-DAD-VT-GIAINPSFRSA-LAKQKDLQGNALFPELKWGATPD 209 (298) T ss_pred -------c-ccccccccc--ccHHHHHHHHHHhhhhc-CCC-cc-EEEEcHHHHHH-HHHhhccCCCeeecCcccCCCCc Confidence 0 011112222 23344455555544333 332 22 68888876652 222333322221000000 0124 Q ss_pred hhcCcccccCCcCCCC------CEEEeccCCcEEEEecCcEEEEEEEcccccce--ecccc---ceeeccc-h--heeee Q lcl|Aclame:pro 257 TIAGRPAYVPPFLPDN------AMVVTIPENLQVLTQHGTAQRKAKHESDRKRS--KTHTG---AWKVTQW-V--CWKRS 322 (341) Q Consensus 257 ~igGlpa~~vPffP~~------~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rv--e~y~s---~YvVEdy-g--~~~~~ 322 (341) ++-|+|++..+++|++ .+++-.++++-.|..++..+-.+.+..+-++. .-|+. +|.+|-+ | ..... T Consensus 210 tl~G~PV~~~~~v~~~~~~~~~~~~~Gdfs~~~~~~~~~~~~~~~~~~~~~d~~~~~~f~~~~v~~r~~~r~~~~~~~~~ 289 (298) T protein:vir:94 210 TINGLPVDVNKTVSDMSLTQRDRAIIGDFANGFKWGYAKEVPLEVIQYGDPDNSGLDLKGYNQVYIRAELFLGWGILDAT 289 (298) T ss_pred eecceeeEEecccccccCCCccEEEEeeccceEEEEEecCceEEEeecCCCcCcchhhhhcCcEEEEEEEEeccEeeccc Confidence 7889999999999975 47888999987787777776666554332322 22222 5666654 3 23334 Q ss_pred ccccccCCc Q lcl|Aclame:pro 323 PLTTQKKST 331 (341) Q Consensus 323 ~~~~~~~~~ 331 (341) .|..++.+| T Consensus 290 a~~~l~~~t 298 (298) T protein:vir:94 290 KFARVTEAN 298 (298) T ss_pred ceEEEEecC Confidence 455555555 No 40 >protein:vir:4511 Length: 409 # NCBI annotation: capsid # Family: family:all:21 # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599037;genbank:gi:19548995;genbank:GeneID:935211 Probab=98.14 E-value=1.1e-06 Score=53.24 Aligned_cols=298 Identities=11% Similarity=0.073 Sum_probs=147.7 Q ss_pred CCccccHHHHHHHHHHHHHH--------------HHhhCch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhh Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQL--------------AKSYGVS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQI 65 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~--------------A~~ngv~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~ 65 (341) -.-....+.++.|.+|+... ++..++. +..-.|.|-+.....+.+.+++.+.+++.++++++..- T Consensus 80 ~~~~~~~~~~~a~~~~l~~~~~~~~~~e~~~~~~~~a~~~~~~~~gg~liP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~ 159 (409) T protein:vir:45 80 NNSQQDEKRAQVFDKWMRHGASELTSEERKALRELRAQGVAQDEKGGYTVPETFLAKVVEKMKSYGGIASVAQILTTSDG 159 (409) T ss_pred CcchhhHHHHHHHHHHHHhhhhhccHHHHHHHHHHhhccCccCcCCceeccHhHHHHHHHHHHhhhhhhhhceeeecCCC Confidence 00001111222344443221 1122221 22235677777778899999999999999999998643 Q ss_pred ccceee-cccccccCCCCCCC-c-cccccCCCCcceEEEEeee-eeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 66 EGQVVD-VGVSGLYTGRKAGG-R-FTKQVGVGGHKYKLAETDS-CAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALD 141 (341) Q Consensus 66 ~Ge~i~-lgv~g~iagrt~t~-r-~~r~~~l~~~~Y~c~qtn~-dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD 141 (341) ....+- .+..+..+.-+..+ . ....+.++.....-++.-. -+.|+.++|+... ++|+..+.+.+.++++.- T Consensus 160 ~~~~~~~~~~~~~~~~~v~E~~~~~~~~~~f~~~~l~~~k~~~~~i~is~ell~ds~-----~~l~~~i~~~la~a~~~~ 234 (409) T protein:vir:45 160 RTMEWATADGTSEVGVLLGENEEAGEEDTDFGMGSLGALKMTSKIIRVSNELLQDSA-----IDMEAYLARRIAERIGRG 234 (409) T ss_pred ceEEEEeeccCccccccccccccccccccccceeeeeeeeeeeeehhhhHHHHhccH-----HHHHHHHHHHHHHHHHHH Confidence 222221 11111111111111 1 1111223333322222211 1346777777654 689999999999999988 Q ss_pred HHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCC Q lcl|Aclame:pro 142 IMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPR 221 (341) Q Consensus 142 ~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~d 221 (341) .-.--++|+-...+. .|. |=|. ..+ +....++.++ .+.|. +.+++.. |++.|+..+. T Consensus 235 ~~~a~l~G~G~~~~~----~p~------Gil~---------~~~-~~~~~~~~~~-~~~d~-i~~l~~~-l~~~~~~~a~ 291 (409) T protein:vir:45 235 EARYLIQGTGAGTPK----QPK------GLAA---------SVT-GTTQTAAANA-VKWQE-ILALKHS-IDPAYRRGPK 291 (409) T ss_pred HHHHhhccCCCCCcc----ccc------eeee---------ccc-cccccccccc-cchHH-HHHHHHh-hhhhhccCCe Confidence 877788886532221 222 1111 000 1111122221 23443 3455654 5788888889 Q ss_pred eEEEeChHHHHHHHhHHH-hccChhH-HHHHHHHHHHhhcCcccccCCcCCC-----CCEEEeccCCcEEEEecCcEEEE Q lcl|Aclame:pro 222 LTVFVGSGLIGAAQAKLY-DKADKPS-EQIAAQKLDKTIAGRPAYVPPFLPD-----NAMVVTIPENLQVLTQHGTAQRK 294 (341) Q Consensus 222 LVvivG~dLla~~~~~l~-n~~~~pt-E~~a~~~i~k~igGlpa~~vPffP~-----~~ilVT~l~NLsIY~Q~gs~RR~ 294 (341) .+++|.+..++ ++..+ +....|- .--.......++-|+|++...++|. ..|++=.+++.-|..+.+..=+. T Consensus 292 ~~~~~n~~~~~--~l~~lkd~~G~~i~~~~~~~~~~~~l~G~PV~~~~~~p~~~~~~~~i~~Gd~~~~~i~~~~~~~~~~ 369 (409) T protein:vir:45 292 FRLAFNDNTLK--LISEMEDGQGRPLWLPDIVGVAPASVLNVPYVIDQEIDDIGAGKKFMFCGDFDRFIIRRVRYMILKR 369 (409) T ss_pred EEEEECHHHHH--HHHHhhcCCCceeeccCcCCCCCceecceeeEEecCcCCccCCccEEEEeehhhhheeeccceEEEE Confidence 99999998765 34444 2222221 0000001124788999999999996 34666678886665443332222 Q ss_pred EEEcccccceecccc-ceeec-cchh--eeeecccc--ccCCcch Q lcl|Aclame:pro 295 AKHESDRKRSKTHTG-AWKVT-QWVC--WKRSPLTT--QKKSTSA 333 (341) Q Consensus 295 ~~d~~~r~rve~y~s-~YvVE-dyg~--~~~~~~~~--~~~~~~a 333 (341) . +++ +..++. +|.++ -+|+ .....|.. +|.+.+| T Consensus 370 ~-~d~----~~~~~~~~~~~~~r~d~~~~~~~A~~~l~~k~s~~~ 409 (409) T protein:vir:45 370 L-VER----YAEYDQTGFLAFHRFDCILEDTSAIKALVGKGSVGG 409 (409) T ss_pred e-ecc----cccCCcEEEEEEEEeccEeechhheEEEEeccCCCC Confidence 2 222 222221 34443 3332 22333443 4445555 No 41 >protein:vir:41 Length: 299 # NCBI annotation: major capsid protein # Family: family:all:507 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463467;swissprot:trembl:q9t1b7;genbank:gi:16798789;uniprot:Q9T1B7;genbank:GeneID:922353 Probab=98.10 E-value=7.1e-07 Score=54.30 Aligned_cols=275 Identities=12% Similarity=0.013 Sum_probs=149.1 Q ss_pred hCchhh------cceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCCC--ccccccCCCC Q lcl|Aclame:pro 24 YGVSNV------AELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAGG--RFTKQVGVGG 95 (341) Q Consensus 24 ngv~~~------~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t~--r~~r~~~l~~ 95 (341) .|-+.- .....|-+.+.+.+++.+++.+.+++..+++++.--..... -.+++.++=...+ .....+.++. T Consensus 1 ~g~~a~~~~~~~~~~~~iP~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~~~~--~~~~~~a~~v~E~~~~~~~~~~f~~ 78 (299) T protein:vir:41 1 MGFNPDTTTMQSAKTGSIPINISEQIITGVKNGSAAMKLAKAVPMTKPEEEFT--FMSGVGAFWVDEAERIQTSKPTFTK 78 (299) T ss_pred CCcCCCcccccCCCceecchhHHHHHHHHHHhcchhhhhceeeecCCCcEEEE--EEcCCceeeeecCccccccccceeE Confidence 443211 12346888888999999999999999999999864332222 2233333322211 1112345677 Q ss_pred cceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHH Q lcl|Aclame:pro 96 HKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFV 175 (341) Q Consensus 96 ~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~ 175 (341) ..+..++.--.+.|+.+.|+. .-++|+..+.+.+.+.++.-.-.--++|+- + ..| .|.++.. T Consensus 79 v~l~~~k~~~~~~is~ell~d-----s~~~~~~~i~~~l~~a~~~~~d~a~l~G~g----~---~~~------~gil~~~ 140 (299) T protein:vir:41 79 AKMRSKKMGVIIPTTKENLNY-----SVTNFFSLMQAEIVEAFYKKFDQAVFTGVE----S---PYN------WNILKSA 140 (299) T ss_pred EEEeeEEEEEeehhhHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHhhccc----C---ccc------ccccccc Confidence 778888766667777777752 135799999999999988877667778842 1 122 2555421 Q ss_pred HHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHHhccChhHHHHHHHHHH Q lcl|Aclame:pro 176 KNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLD 255 (341) Q Consensus 176 Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~ 255 (341) .. .......+.-.|.+ +.+++.. +.+.++... +++|.++.... ...|-.....|--.-..+.-. T Consensus 141 ~~--------~~~~~~~~~~~~~~----l~~~~~~-l~~~~~~~~--~~v~n~~~~~~-L~~lkd~~G~~l~~~~~~~~~ 204 (299) T protein:vir:41 141 TD--------ASNLVEETANKYDD----LNEAIGL-IEAEDLEPN--GIATIRKQRVK-YRSTKDGNGMPIFNTATSNGV 204 (299) T ss_pred cc--------cceeeccccccHHH----HHHHHHh-hhcccCCcC--EEEEcHHHHHH-HHHhhccCCceeecCCcCCCC Confidence 11 11111122223433 3455554 455554432 68899886542 233433332221100000012 Q ss_pred HhhcCcccccCCcCCCCC----EEEeccCCcEEEEecCcEEEEEEEccccccee-------c-ccc---ceeec-cchhe Q lcl|Aclame:pro 256 KTIAGRPAYVPPFLPDNA----MVVTIPENLQVLTQHGTAQRKAKHESDRKRSK-------T-HTG---AWKVT-QWVCW 319 (341) Q Consensus 256 k~igGlpa~~vPffP~~~----ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve-------~-y~s---~YvVE-dyg~~ 319 (341) .++-|+|++..+++|.+. +++-.++++.|....+ .+-.+.++....... + |+. +|.++ .+|.. T Consensus 205 ~~l~G~PV~~~~~~~~~~~~~~~~~gdfs~~~i~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~d~~ 283 (299) T protein:vir:41 205 DDVLGLPIAYTPKYTFGDKDISELVGDWNQAYYGILRG-VEYEILTEATLTTVADETGKPLNLAERDMAAIKATFEVGFM 283 (299) T ss_pred ceecceeeEEecccCCCCCceEEEEEecccEEEEEecC-cEEEEeecccccccccccccchhhhhcCcEEEEEEEEeccE Confidence 468899999999999998 9999999986655544 333333333211111 1 111 33333 33433 Q ss_pred eeeccccccCCcchhc Q lcl|Aclame:pro 320 KRSPLTTQKKSTSALN 335 (341) Q Consensus 320 ~~~~~~~~~~~~~a~~ 335 (341) ..-+--+.++..+|-| T Consensus 284 v~~~~A~~~l~~~aa~ 299 (299) T protein:vir:41 284 VVKDEAFSAVQPKAGN 299 (299) T ss_pred EecccceEEEEeccCC Confidence 3222222333333444 No 42 >protein:vir:10364 Length: 390 # NCBI annotation: head protein; major capsid subunit precursor # Family: family:all:585 # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858956;genbank:gi:32128421;genbank:GeneID:2648357 Probab=98.09 E-value=1.8e-06 Score=52.08 Aligned_cols=287 Identities=9% Similarity=-0.048 Sum_probs=140.9 Q ss_pred CC-ccccHHHHHHHHHHH------------HHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhcc Q lcl|Aclame:pro 1 MS-QILTQSAREYMDNFA------------QQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEG 67 (341) Q Consensus 1 m~-~~M~~~tr~~~~~y~------------~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~G 67 (341) +. +..+......+..+. ............+....+-|.....+++.+.+.+.+++.++++++..-.+ T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~ 157 (390) T protein:vir:10 78 VGDLFVASEQFQASAGRWNDRSARATMNIKAALNTASTDAAGSAGALTTPNRLPGFITQPDARLTVRDLIGSGRTDSALI 157 (390) T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhHHHHHHHhhhcccccccccccchhHHHHHHHHHHhhchhhhhcceeeccCCce Confidence 00 001111111111111 00011111111223345777888899999999999999999998875544 Q ss_pred ceeecccccccCCCCCC-C-ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHH Q lcl|Aclame:pro 68 QVVDVGVSGLYTGRKAG-G-RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRI 145 (341) Q Consensus 68 e~i~lgv~g~iagrt~t-~-r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~I 145 (341) .........+-++-... + .....+.++...+..++.---+.|+.+.|+. -++++..+.+.+.+.++.-.-.- T Consensus 158 ~~~~~~~~~~~a~~v~Eg~~~~~~~~~~~~i~~~~~k~~~~~~is~ell~d------~~~l~~~i~~~l~~~~~~~~~~~ 231 (390) T protein:vir:10 158 EYVQETGFVNNAAIVAEGALKPESSLKFAKKTDTTHVIAHTMKATRQILSD------APQLASYMNNRLIRGLKVKEDAE 231 (390) T ss_pred EEEEEecCCcceeeecCCccccccccceeEEEEeeEEEEEeehhhHHHHHh------HHHHHHHHHHHHHHHHHHHHHHH Confidence 44433221111221111 1 1122345666777777766667777777653 25788899999998887755555 Q ss_pred hhccccccccCChhhccchhhhhhhHHHHHHHhhccccccc----cceeecCCchhhhHHHHHHHHHhcccchhhccCCC Q lcl|Aclame:pro 146 GWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDV----DVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPR 221 (341) Q Consensus 146 GfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~----~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~d 221 (341) -++|+- ++ .+|.+ +++. ......++.+ ..| .+.+++..+ .+.++.. T Consensus 232 il~G~G----~~--~~p~G------------------i~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~l-~~~~~~~-- 281 (390) T protein:vir:10 232 ILRGTG----AN--DGLLG------------------LIPQATTYAAPTTIAGAT--RVD-QLRLAMLQA-SLAEYPA-- 281 (390) T ss_pred HhhcCC----CC--ccccc------------------cccccccccccccccccc--hHH-HHHHHHHhh-ccccCCC-- Confidence 556632 11 12322 1111 1111122222 234 355666555 4445443 Q ss_pred eEEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCC-cEEEEecCcEEEEEEEcc- Q lcl|Aclame:pro 222 LTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPEN-LQVLTQHGTAQRKAKHES- 299 (341) Q Consensus 222 LVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~N-LsIY~Q~gs~RR~~~d~~- 299 (341) -+++|.+..+.. -..|-.....|-=.-.......++-|+|++..+++|++.+++-.+++ ..|+...| .+=.+.+.. T Consensus 282 ~~~v~n~~~~~~-L~~lkd~~g~~l~~~~~~~~~~~l~G~pv~~~~~~p~~~~~~gdf~~~~~~~~~~~-~~i~~~~~~~ 359 (390) T protein:vir:10 282 SGIVINPIDWAA-IELAKDANNQYLIGNARGTLTPTLWGLPVVATQAMAPGEFLVGAFDLAAQIFDQWD-ARVEIGYVND 359 (390) T ss_pred CEEEEcHHHHHH-HHHhhcCCCceeecCCcCcCCceecceeeEEcCCCCCCcEEEEeccceEEEEEecc-eEEEEeeccc Confidence 267788875542 22222222222000001112457899999999999999999999986 44555444 222222221 Q ss_pred --cccceecc---ccceeeccchheeeeccccccCC Q lcl|Aclame:pro 300 --DRKRSKTH---TGAWKVTQWVCWKRSPLTTQKKS 330 (341) Q Consensus 300 --~r~rve~y---~s~YvVEdyg~~~~~~~~~~~~~ 330 (341) .++.+.-+ .-++.|-+..+|..+.| + T Consensus 360 ~~~~~~~~~r~~~r~d~~v~~~~a~~~~~~-----a 390 (390) T protein:vir:10 360 DFQRNMVTVLAEERLALVVYRPEALISGSF-----A 390 (390) T ss_pred ccccCcEEEEEEEeeccEEeccccEEEEEe-----C Confidence 22322211 00333333333333333 3 No 43 >protein:vir:6242 Length: 390 # NCBI annotation: gp36 # Family: family:all:21 # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813696;swissprot:trembl:q859c1;genbank:gi:29366756;interpro:IPR006444;uniprot:Q859C1;genbank:GeneID:1258897 Probab=98.06 E-value=1.1e-06 Score=53.17 Aligned_cols=291 Identities=9% Similarity=0.004 Sum_probs=138.2 Q ss_pred CCccccHHHHHHHHHHHHH------------HHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhc-ccceecchhhcc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQ------------LAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLK-MITVTTVDQIEG 67 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~------------~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~-~Inv~~V~~~~G 67 (341) .....+........+|+.. .....+. ..+....+-|++.++++..+.+.+..|+ ..+++++....+ T Consensus 77 ~~~~~~~~~~~~~~~~~r~~~~~~~r~~~~~~~~~~~t-~~~~g~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~ 155 (390) T protein:vir:62 77 SGSGAQRSADVDDDATLRAGNLGEARSFEFAPEKRDGT-KAGNPNVLSRTLYGQLIAQAVERSAIMRGGATTFTTSDANP 155 (390) T ss_pred ccccchhhcchHHHHHHhhhhhhhhHHHHhhhhhhccc-ccCCCccccccchHHHHHHHHhhhhhhhhcceeeecCCCce Confidence 0000011111111122111 0011111 2222334566666665555444444454 557777653222 Q ss_pred ceeecccccccCCCCCC-C-ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHH Q lcl|Aclame:pro 68 QVVDVGVSGLYTGRKAG-G-RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRI 145 (341) Q Consensus 68 e~i~lgv~g~iagrt~t-~-r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~I 145 (341) -.+-.-.+++.++-... + .....+.++...|..++.=--+.|++++|+.-. ++|+..+.+.+.+.++.=.-.- T Consensus 156 ~~~p~~~~~~~a~wv~E~~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~~i~~~~d~~ 230 (390) T protein:vir:62 156 LDFTVITGRSSASIVGETAEIPESYPATAQRSMGGFKYGFASVVSYEFATDQV-----LDLVGFLVSDAGPAIGDAMGRH 230 (390) T ss_pred eEEEEEcCCcceeeecccccccccccceeeeEeeeeeEEeehHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHhh Confidence 22333333333332221 1 112233455556666665556788888887644 6899999999999887655555 Q ss_pred hhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceee-cCCchhhhHHHHHHHHHhcccchhhccCCCeEE Q lcl|Aclame:pro 146 GWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFD-ETNGDYRTLDAMASDIINNQIHPMFRNDPRLTV 224 (341) Q Consensus 146 GfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~-g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVv 224 (341) -+||+- . | +|++... ++. ....... .+..+|.+|- +++.+| ++.|+. .-++ T Consensus 231 ~l~G~G-----~----p------~Gi~~~~---~~~---~~~~~~~~~~~~~~~~l~----~~~~~l-~~~~~~--~a~~ 282 (390) T protein:vir:62 231 FITGTG-----Q----P------RGILTDA---SPA---TATFLATDTDSKVSDALI----DLFHEV-PSAYRA--NAKY 282 (390) T ss_pred hhccCC-----c----c------ccccccc---ccc---ccceecccccccchHHHH----HHHHhh-hhhhhc--CCEE Confidence 667732 1 3 4665421 000 0111111 1223444443 444444 666765 3478 Q ss_pred EeChHHHHHHHhHHHh-ccChhH--HHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccc Q lcl|Aclame:pro 225 FVGSGLIGAAQAKLYD-KADKPS--EQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDR 301 (341) Q Consensus 225 ivG~dLla~~~~~l~n-~~~~pt--E~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r 301 (341) +|.+..+. ++..+- ....|- .-+.. .-..++.|+|++..+++|++.|++=.|+..-|....+ ..-.... T Consensus 283 vmn~~~~~--~L~~lkd~~g~~l~~~~~~~-g~~~~l~G~Pv~~~~~~p~~~i~~gd~s~~~i~~~~~-~~v~~~~---- 354 (390) T protein:vir:62 283 VVNDLRAA--QMRKLKDANGQYLWQSGLTV-GAPSLFNGKVVETDDGMPADKILFADLSKYRVRFAGS-LRVDRSV---- 354 (390) T ss_pred EEchHHHH--HHHHhhccCCCeeecCCcCC-CccceecccceEEecCCCCccEEEeeccceeEEeecc-eEEEeec---- Confidence 99998765 344342 222220 00000 0124799999999999999999988777654443332 2111111 Q ss_pred cceecccc-ceeec-cchhe--eeeccccccCCcch Q lcl|Aclame:pro 302 KRSKTHTG-AWKVT-QWVCW--KRSPLTTQKKSTSA 333 (341) Q Consensus 302 ~rve~y~s-~YvVE-dyg~~--~~~~~~~~~~~~~a 333 (341) +.+-.++. +|.++ -+||. ....|...+..++| T Consensus 355 ~~~~~~~~~~~~~~~r~d~~~~~~~A~~~l~~~~~a 390 (390) T protein:vir:62 355 DAKFSTDQIVYRFLQRADGLLVDARGAKVLTVTPGA 390 (390) T ss_pred cccccCCcEEEEEEEEeCcEeechhheEEEEeecCC Confidence 12222222 44443 34442 22235555555555 No 44 >protein:vir:94673 Length: 419 # NCBI annotation: major capsid protein # Family: family:all:585 # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579208;genbank:gi:93007444;genbank:GeneID:5076792 Probab=98.05 E-value=2.1e-06 Score=51.67 Aligned_cols=298 Identities=9% Similarity=-0.061 Sum_probs=139.1 Q ss_pred CCccccHHHHHHHHHHHHHHHHh---hCch----hhcceeecChHHHHHHHHHHHh-hHHHhcccceecchhhccceee- Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKS---YGVS----NVAELFNVSPQLETKLRAAITE-SAEFLKMITVTTVDQIEGQVVD- 71 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~---ngv~----~~~~~Fsv~P~~~q~L~~~iqe-ss~FL~~Inv~~V~~~~Ge~i~- 71 (341) ..-.+....+..+..+....... +... .....+.+.|......+..+.+ ++.+.+.++++++..-...... T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 173 (419) T protein:vir:94 94 LREYRARDKRGQFQVEMRDIDPNRLLSRDAPAGTITNPNVPHLPQLVPGIVPTTPDLPLLVADLLDQQNADYNVLEYIRD 173 (419) T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhccccccccccCCcccccchhhhHHHHHHHhhhhhhhhcceeeeccCCceeeeee Confidence 00001111111111111111100 0000 1123456777777776665544 4556667888876543222111 Q ss_pred ------cccccccCCCCCC-C-ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 72 ------VGVSGLYTGRKAG-G-RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIM 143 (341) Q Consensus 72 ------lgv~g~iagrt~t-~-r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i 143 (341) +...++.++=+.. + .....+.++...+..++.---+.|+.++|+. -++|+..+.+.+.+.++.=.- T Consensus 174 ~~~~~~~~~~~~~a~~v~Eg~~~~~~~~~~~~i~~~~~k~~~~~~is~ell~d------~~~l~~~i~~~la~a~~~~~d 247 (419) T protein:vir:94 174 TSGTAGAGSTWNKAAVVPEGTAKPQSTLSFDTITTTLKTVAHWLPITRQAADD------NSQLMGYIQGRLTYGLRFLRD 247 (419) T ss_pred ccccccccccCcccceecCCccccccccceeeEEeeeeeEEEeehhhHHHHHh------HHHHHHHHHHHHHHHHHHHHH Confidence 1111111111111 1 1112234566666666666667788777763 256999999999999988877 Q ss_pred HHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeec-CCchhhhHHHHHHHHHhcccchhhccCCCe Q lcl|Aclame:pro 144 RIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDE-TNGDYRTLDAMASDIINNQIHPMFRNDPRL 222 (341) Q Consensus 144 ~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g-~ggdy~nLDalv~d~~~~li~~~~r~~~dL 222 (341) .-.+||+- +.+|. |++..-.- ..+...+..... ....|.+| .+++..+....++.. T Consensus 248 ~aii~G~G-------~~~p~------Gi~~~~~~---~~~~~~~~~~~~t~~~~~~~l----~~~~~~~~~~~~~~~--- 304 (419) T protein:vir:94 248 RQLLNGNG-------STEMQ------GILTTPGI---GTYQQPKPTAPATDEPPLVDI----RRAKTVAEIAGFPPD--- 304 (419) T ss_pred HHHHhccC-------ccccc------ceeccccc---ccccccccccccccchhHHHH----HHHHHhhhhccCCCC--- Confidence 77888833 22444 77662110 011111111111 11123333 344444444444332 Q ss_pred EEEeChHHHHHHHhHHHhccChhH--HHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccc Q lcl|Aclame:pro 223 TVFVGSGLIGAAQAKLYDKADKPS--EQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESD 300 (341) Q Consensus 223 VvivG~dLla~~~~~l~n~~~~pt--E~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~ 300 (341) +++|.+..+.. ...+....+.+- .--+......++-|+|++..+++|++.+++-.+++...++.++...=.+.+... T Consensus 305 ~~v~n~~~~~~-l~~~k~~~~~~~~~~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~gd~~~~~~~~~~~~~~v~~~~~~~ 383 (419) T protein:vir:94 305 GVVVHPQDWES-IELDQAPGSGVFRVIANVQGEATPRIWGLNVVSTVAIAQGTALVGGFRQGATLWSRQGITVLMTDSHA 383 (419) T ss_pred EEEEcHHHHHH-HHHHhhcCCCceeecCCcccCCCccccceeeEEcCCCCCccEEEeeccceEEEEEecceEEEEecccc Confidence 78888876442 222322222210 001111224588999999999999999999999987666655544433322221 Q ss_pred ccceeccccceeeccc--------hheeeeccccccCCc Q lcl|Aclame:pro 301 RKRSKTHTGAWKVTQW--------VCWKRSPLTTQKKST 331 (341) Q Consensus 301 r~rve~y~s~YvVEdy--------g~~~~~~~~~~~~~~ 331 (341) +.+..-.-+|.++.+ .+|..+.++.+ +| T Consensus 384 -~~~~~~~~~~r~~~r~d~~v~~~~a~~~~~~~aa--~~ 419 (419) T protein:vir:94 384 -DFFTANTLVILAEFRANLAVYQPKAFVRVTFAAA--TT 419 (419) T ss_pred -chhhcCcEEEEEEEeeccEEeccccEEEEEeccC--CC Confidence 111110114444443 33333333322 22 No 45 >protein:vir:4456 Length: 401 # NCBI annotation: Major capsid protein precursor # Family: family:all:21 # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700379;genbank:gi:23505451;genbank:GeneID:955658 Probab=98.04 E-value=1.6e-06 Score=52.38 Aligned_cols=299 Identities=13% Similarity=0.085 Sum_probs=153.5 Q ss_pred CCccccHHHHHHHHHHHHHHHH--hhCch--------hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhcccee Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAK--SYGVS--------NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVV 70 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~--~ngv~--------~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i 70 (341) ..-....+.+..|..|+..... ....+ +..-.+.|-+.+.+.+.+.+++.+.+++.++++++.-.. -++ T Consensus 75 ~~~~~~~e~~~a~~~~lr~~~~~~~~~~e~~a~~~~~~~~GG~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~-~~~ 153 (401) T protein:vir:44 75 AQNKVAAEHKDAFVGFLRKGREDGLRDLERKALQVGTDEDGGYAVPEELDRSILSLLKDEVVMRQEATVITVGGSD-YKK 153 (401) T ss_pred cccchhHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCCCCceeccHhHHHHHHHHHHhhhhhhhhceeeecCCCc-eEE Confidence 2223445567778887743211 10110 112246677777889999999999999999999886432 233 Q ss_pred ecccccccCCCCCCC-ccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhh Q lcl|Aclame:pro 71 DVGVSGLYTGRKAGG-RFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGW 147 (341) Q Consensus 71 ~lgv~g~iagrt~t~-r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGf 147 (341) ....+++.++-...+ ..+ ....++...|..++.---+.|+.+.|+. + ..+|+..+.+.+.+.++.-.-.--+ T Consensus 154 ~~~~~~~~a~wv~E~~~~~~~~~~~~~~v~~~~~k~~~~~~iS~ell~d-s----~~~l~~~i~~~la~ai~~~~~~~~l 228 (401) T protein:vir:44 154 LVNLGGTASGWVGETDTRSQTATSRLGLIEPFMGEIYGNPQATQKMLDD-A----FFNVEAWINSELATEFAEQEEIAFT 228 (401) T ss_pred EEecCCccceeeccccccCccccccceeeeeehhheeeehhhhHHHHhc-c----hHHHHHHHHHHHHHHHHHHHHhhhh Confidence 333444444432221 111 1123444444444433335566666652 2 3589999999999999988888888 Q ss_pred ccccccccCChhhccchhhhhhhHHHHHHHhhccccccccc---eeecCCchhhhHHHHHHHHHhcccchhhccCCCeEE Q lcl|Aclame:pro 148 NGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDV---YFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTV 224 (341) Q Consensus 148 nG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~---~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVv 224 (341) ||+-. .+| +|.|..............+. +..++.++ .+.|.++ +++..| ++.|+.. -|+ T Consensus 229 ~G~G~-------~~p------~Gil~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~d~i~-~~~~~l-~~~~~~~--a~~ 290 (401) T protein:vir:44 229 TGDGT-------KKP------KGFLAYESTEESDKARAFGKLQHIVSGEATA-VTADAII-KLIYTL-RKAHRTG--AKF 290 (401) T ss_pred ccCCC-------Ccc------ceeeccccccccccccccccccccccccccc-cCHHHHH-HHHHhc-chhhhcC--CEE Confidence 88431 122 35554333222111111111 11122222 2345443 666654 6666653 478 Q ss_pred EeChHHHHHHHhHHH-hccChhHHHH-HHHHHHHhhcCcccccCCcCCCCC-----EEEeccCC-cEEEEecCcEEEEEE Q lcl|Aclame:pro 225 FVGSGLIGAAQAKLY-DKADKPSEQI-AAQKLDKTIAGRPAYVPPFLPDNA-----MVVTIPEN-LQVLTQHGTAQRKAK 296 (341) Q Consensus 225 ivG~dLla~~~~~l~-n~~~~ptE~~-a~~~i~k~igGlpa~~vPffP~~~-----ilVT~l~N-LsIY~Q~gs~RR~~~ 296 (341) +|.+..+. ++..+ +..+.|-=.- ....-..++-|+|++..+++|..+ +++=.|+- ..|+-..| .+- . T Consensus 291 v~n~~~~~--~L~~lkd~~G~~l~~~~~~~g~~~~l~G~PVv~~~~~p~~~~~~~~i~~Gd~~~~~~i~~~~~-~~~--~ 365 (401) T protein:vir:44 291 MMNNNSLF--AIRLLKDTEGNYLWRPGLELGQPSSLAGYGIAENEQMPDIAADAKAIAFGNFKRGYTIVDRIG-TRI--L 365 (401) T ss_pred EEcHHHHH--HHHHhhccCCceeecCCcCCCCCceecceeeEEecCcCCccCCccEEEEeehhccEEEEEecc-eEE--e Confidence 99998654 33333 3333331000 000112479999999999999744 66666653 33332333 322 1 Q ss_pred Ecccccceecccc-ceeec-cchhe--eeeccccccCCcc Q lcl|Aclame:pro 297 HESDRKRSKTHTG-AWKVT-QWVCW--KRSPLTTQKKSTS 332 (341) Q Consensus 297 d~~~r~rve~y~s-~YvVE-dyg~~--~~~~~~~~~~~~~ 332 (341) ++.+..++. +|.++ -+|+. ....|...+.+++ T Consensus 366 ----~~~~~~~~~v~~~a~~r~d~~~~~~~a~~~l~~~aa 401 (401) T protein:vir:44 366 ----RDPYTNKPFVGFYTTKRTGGMLVDSQAIKLLKIAAA 401 (401) T ss_pred ----eeccccCCcEEEEEEEEeccEEecccceEEEEeecC Confidence 111222221 34433 34432 3334555555555 No 46 >protein:vir:81070 Length: 390 # NCBI annotation: p09 # Family: family:all:585 # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285679;genbank:gi:148727187;genbank:GeneID:5247115 Probab=98.03 E-value=2.7e-06 Score=51.09 Aligned_cols=293 Identities=9% Similarity=-0.038 Sum_probs=148.0 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhC---------------chhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhh Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYG---------------VSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQI 65 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ng---------------v~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~ 65 (341) +.. +.. -...+.++.......-+ ....+....+-|.....+++.+.+.+.+++.++++++..- T Consensus 78 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ii~~~~~~~~l~~~~~~~~~~~~ 155 (390) T protein:vir:81 78 VGD-MFV-ASEQFQASAGRWNDRSARATMNIKAALNTASTDAAGSAGALTTPNRLPGFITPPDARLTVRDLIGSGRTDSA 155 (390) T ss_pred chh-hhh-hhHHHHHHHHHHhhhhhhhhhHHHHHHHhhccccccCCcceechhhhHHHHHHHhhhhhhhhhcceeeccCC Confidence 110 000 00111111111111111 0112233457888889999999999999999999988755 Q ss_pred ccceeecccccccCCCCC-CCcc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 66 EGQVVDVGVSGLYTGRKA-GGRF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIM 143 (341) Q Consensus 66 ~Ge~i~lgv~g~iagrt~-t~r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i 143 (341) ...........+-+.-.. .+.. ...+.++...+..++.--.+.|+.+.|+.- ++++..+.+.+.+.++.-.- T Consensus 156 ~~~~~~~~~~~~~a~~v~Eg~~~~~~~~~~~~i~~~~~k~~~~~~is~ell~d~------~~~~~~i~~~l~~~~~~~~d 229 (390) T protein:vir:81 156 LIEYVQETGFVNNAAIVAEGALKPESSLKFAKKTDTTHVIAHTMKATRQILSDA------PQLASYMNNRLIRGLKVKED 229 (390) T ss_pred ceEEEEEecCCcceeeecCCcccccccceeeEEEEeeeEEEEeehhhHHHHHhH------HHHHHHHHHHHHHHHHHHHH Confidence 444554432222222111 1111 122456777788887777788888777632 46888899999998888777 Q ss_pred HHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeE Q lcl|Aclame:pro 144 RIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLT 223 (341) Q Consensus 144 ~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLV 223 (341) .--+||.- ++ .+| +|.+...- ..+.....++. ...| .+.+++..+.+..+..+ + T Consensus 230 ~a~l~G~g----~~--~~~------~Gi~~~~~--------~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~---~ 283 (390) T protein:vir:81 230 AEILRGTG----AN--DGL------LGLIPQAT--------TYAAPTTIAGA--TRVD-QLRLAMLQASLAEYNPS---G 283 (390) T ss_pred HHHHhcCC----CC--Ccc------cceeeccc--------ccccccccccc--hhHH-HHHHHHHhhccccCCCC---E Confidence 77778832 21 112 24332100 00111111122 2344 34555655544443322 7 Q ss_pred EEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccc Q lcl|Aclame:pro 224 VFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKR 303 (341) Q Consensus 224 vivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~r 303 (341) ++|.+..++. -..|-.....|-=.-.......++-|+|++..+++|++.+++=.+++.-..+.++..+=...+.+.. T Consensus 284 ~v~~~~~~~~-l~~lkd~~G~~l~~~~~~~~~~~l~G~pv~~~~~~p~~~~~~gd~~~~~~~~~~~~~~v~~~~~~~~-- 360 (390) T protein:vir:81 284 IVINPIDWAA-IELAKDANNQYLIGNARGTLTPTLWGLPVVATQAMAPGEFLVGAFDLAAQIFDQWDARVEIGYVGED-- 360 (390) T ss_pred EEEcHHHHHH-HHHhhcCCCceeecCcccccCceecceeeEEcCCCCCCcEEEEehhceEEEEEecceEEEEecccch-- Confidence 8889886542 2223222222210001111235788999999999999999999998843334344444333322221 Q ss_pred eeccccceeeccc-h--heeeeccccccCC Q lcl|Aclame:pro 304 SKTHTGAWKVTQW-V--CWKRSPLTTQKKS 330 (341) Q Consensus 304 ve~y~s~YvVEdy-g--~~~~~~~~~~~~~ 330 (341) +..-.-+|.++-+ | ......|..+..+ T Consensus 361 ~~~~~v~~r~~~r~d~~v~~~~a~v~~t~a 390 (390) T protein:vir:81 361 FQRNMITVLAEERLALVVYRPEALISGSFA 390 (390) T ss_pred hhcCcEEEEEEEeeccEEecccceEEEEeC Confidence 1100114444432 2 2222334444333 No 47 >protein:vir:4226 Length: 326 # NCBI annotation: observed 35.2Kd protein # Family: family:all:507 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039681;swissprot:sw:q05223;genbank:gi:9625447;uniprot:Q05223;genbank:GeneID:2942929 Probab=98.03 E-value=8.4e-07 Score=53.90 Aligned_cols=299 Identities=10% Similarity=0.023 Sum_probs=152.4 Q ss_pred ccccH-HHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCC Q lcl|Aclame:pro 3 QILTQ-SAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGR 81 (341) Q Consensus 3 ~~M~~-~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagr 81 (341) |.+++ +++..+.....+ ...+...+..-.|-|++.+.+.+.+++.+..+++++++++.-- +.++-.-.+++-++. T Consensus 1 ~~~~~~r~~~~~~~~e~~---a~~~~~~~~g~~ip~~~~~~ii~~~~~~s~i~~~~~~~~~~~~-~~~~p~~~~~~~a~~ 76 (326) T protein:vir:42 1 MAVNPDRTTPFLGVNDPK---VAQTGDSMFEGYLEPEQAQDYFAEAEKISIVQQFAQKIPMGTT-GQKIPHWTGDVSASW 76 (326) T ss_pred CCCCccchhhhcCcchhh---heeccccCCcceechhhHHHHHHHHHhcchhhhhcceeeccCC-ceEEEEEeCCcceEE Confidence 55665 444433322222 2222222223348889999999999999999999999987632 234433334444443 Q ss_pred CCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChh Q lcl|Aclame:pro 82 KAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPS 159 (341) Q Consensus 82 t~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~ 159 (341) ...+ .....+.++...+..++.---+.|+.+.|+. + ..+|+..+.+.+.++++.-.-.-.|||+- + T Consensus 77 v~Eg~~~~~~~~~f~~i~~~~~k~~~~v~iS~ell~~-s----~~~~~~~i~~~l~~a~~~~~d~a~l~G~g----s--- 144 (326) T protein:vir:42 77 IGEGDMKPITKGNMTSQTIAPHKIATIFVASAETVRA-N----PANYLGTMRTKVATAFAMAFDNAAINGTD----S--- 144 (326) T ss_pred ecCCccccccccceeEEEEeeEEEEEeehhhHHHHhc-C----HHHHHHHHHHHHHHHHHHHHHHHhhcccC----C--- Confidence 3221 1122346677778888766666776666552 2 36899999999999999988888999943 1 Q ss_pred hccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHH Q lcl|Aclame:pro 160 ANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLY 239 (341) Q Consensus 160 anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~ 239 (341) .+|.+= +. .-...............+..+..++ ..+++. .+.+.++. ..+++|.+..+.. ...|- T Consensus 145 ~~p~gi------~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~--~a~~v~n~~~~~~-L~~lk 209 (326) T protein:vir:42 145 PFPTFL------AQ---TTKEVSLVDPDGTGSNADLTVYDAV--AVNALS-LLVNAGKK--WTHTLLDDITEPI-LNGAK 209 (326) T ss_pred Cccccc------cc---cccccceeecccccccccchhHHHH--HHHHHh-hhhhhccC--ccEEEEeHHHHHH-HHHhh Confidence 223221 10 0000011111111111222333333 333332 33455444 4578888877652 22232 Q ss_pred hccChhH------HHHHHHHHHHhhcCcccccCCcCCCCCEEE--eccCCcEEEEecCcEEEEEEEcc--------cccc Q lcl|Aclame:pro 240 DKADKPS------EQIAAQKLDKTIAGRPAYVPPFLPDNAMVV--TIPENLQVLTQHGTAQRKAKHES--------DRKR 303 (341) Q Consensus 240 n~~~~pt------E~~a~~~i~k~igGlpa~~vPffP~~~ilV--T~l~NLsIY~Q~gs~RR~~~d~~--------~r~r 303 (341) .....|- ..........++-|+|++..+++|++.+++ ..++++-|. ..+...-.+.++. .-.. T Consensus 210 d~~G~~l~~~~~~~~~~~~~~~~~l~G~pv~~~~~~~~~~~~~~~Gd~s~~~~~-~~~~~~v~~~~e~~~~~~~~~~~~~ 288 (326) T protein:vir:42 210 DKSGRPLFIESTYTEENSPFRLGRIVARPTILSDHVASGTVVGYQGDFRQLVWG-QVGGLSFDVTDQATLNLGTPQAPNF 288 (326) T ss_pred ccCCceeeccccccCccccccCceeeeeeEEEcCCCCCCceEEEEeecceEEEE-EecceEEEEeecceeeecccccccc Confidence 2222211 000111123578999999999999998754 577877543 4444433333322 2222 Q ss_pred eecccc---ceeeccc-hh--eeeecccc--ccCCcch Q lcl|Aclame:pro 304 SKTHTG---AWKVTQW-VC--WKRSPLTT--QKKSTSA 333 (341) Q Consensus 304 ve~y~s---~YvVEdy-g~--~~~~~~~~--~~~~~~a 333 (341) +..|++ +|.++-| ++ .....|.. .+.+++| T Consensus 289 ~~~~~~d~~~~r~~~~~d~~v~~~~a~~~l~~~~~~~~ 326 (326) T protein:vir:42 289 VSLWQHNLVAVRVEAEYAFHCNDKDAFVKLTNVDATEA 326 (326) T ss_pred hhhhhcCcEEEEEEEEeccEEecccceEEEeeccccCC Confidence 222322 3434433 21 11122211 1222333 No 48 >protein:vir:105905 Length: 304 # NCBI annotation: major capsid protein # Family: family:all:507 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004375;genbank:gi:122891830;genbank:GeneID:4712376 Probab=98.01 E-value=1.1e-06 Score=53.27 Aligned_cols=281 Identities=12% Similarity=0.088 Sum_probs=150.4 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYT 79 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~ia 79 (341) |. -.+. ..-++. ...-.+.|-++..+.+++.+.+.+.+++.++++++.--. -++-.-.+++.+ T Consensus 1 ma----~~~~-----------~~~~~~~t~~gg~lip~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~-~~ip~~~~~~~a 64 (304) T protein:vir:10 1 MA----TPTY-----------TPGNVILSDFKNGVIPAEQGTLIMKDIMANSAIMKLAKNEPMTAQK-KKFTYLAKGVGA 64 (304) T ss_pred Cc----cccc-----------ccccccccCCCceecchhHHHHHHHHHHhccchhhhcceeeccCCc-eEEEEEeCCcce Confidence 21 1111 111121 122356788888899999999999999999999876422 222222233333 Q ss_pred CCCCC-Ccc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 80 GRKAG-GRF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 80 grt~t-~r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) .-... +.. ...+.++...+..++.---+.|+.+.|. .+ ..+|+..+.+.+.+.++.-.-.-.+||.-....+. T Consensus 65 ~~v~E~~~~~~~~~~~~~i~~~~~k~~~~~~iS~ell~-ds----~~~l~~~i~~~l~~~ia~~~d~~~l~G~g~~~~~~ 139 (304) T protein:vir:10 65 YWVSETERIQTSKPEYAQAEMEAKKIGVIIPLSKEFLK-WT----AKDFFNEVKPLIAEAFYKAFDQAVIFGTKSPYNTS 139 (304) T ss_pred EEeecCcccccccceeeEEEEEEEEEEEeehhhHHHHh-cc----hHHHHHHHHHHHHHHHHHHHHhhheeccCCCcccc Confidence 32221 111 1224556666666665555677766554 22 36899999999999999999999999954222211 Q ss_pred hhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhH Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAK 237 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~ 237 (341) ...+..+..+. ..+....++.-.|.+|-.|+.. + .+.+++.. +++|.+..++. ... T Consensus 140 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~----l-~~~~~~~~--~~v~~~~~~~~-L~~ 195 (304) T protein:vir:10 140 TSGKPLVEGAE----------------EKGNVVTDTNNLYVDLSALMAT----I-EDEELDPN--GVLTTRSFRSK-MRN 195 (304) T ss_pred ccccccccccc----------------ccccccccccchHHHHHHHHHH----h-hhccCCcC--EEEEcHHHHHH-HHH Confidence 11111111110 0111111233346666555433 3 33343332 68899987763 223 Q ss_pred HHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCC----EEEeccCCcEEEEecCcEEEEEEEccc----------ccc Q lcl|Aclame:pro 238 LYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNA----MVVTIPENLQVLTQHGTAQRKAKHESD----------RKR 303 (341) Q Consensus 238 l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~----ilVT~l~NLsIY~Q~gs~RR~~~d~~~----------r~r 303 (341) +-.....|- -+.-..++-|+|++..+++|... +++..++++- +...+..+-.+.++.. =+. T Consensus 196 lkd~~G~~l----~~~~~~~l~G~PV~~~~~~~~~~~~~~~~~gd~~~~~-~~~~~~~~i~~~~e~~~~~~~~~~~~g~~ 270 (304) T protein:vir:10 196 ALDANDRPL----FDANGNEIMGLPLSYTGADVYDKKKSLALMGDWDYAR-YGILQGIEYAISEDATLTTLQASDASGQP 270 (304) T ss_pred hhccCCcEe----ecCCCccccceeeEEecccccCCCCcEEEEEehhhEE-EEEecceEEEEeecceeeeecccccCccc Confidence 333322321 00002468899999999999665 8999999974 4444555544444431 111 Q ss_pred eecccc---ceeeccc-h--heeeeccccccCCc Q lcl|Aclame:pro 304 SKTHTG---AWKVTQW-V--CWKRSPLTTQKKST 331 (341) Q Consensus 304 ve~y~s---~YvVEdy-g--~~~~~~~~~~~~~~ 331 (341) +--|+. +|.+|.+ | ......|...+.++ T Consensus 271 ~~~f~~~~~~~r~~~r~~~~v~~~~a~~~l~~a~ 304 (304) T protein:vir:10 271 VSLFERDMFALRATMHIAYMNVKPEAFATLKPTE 304 (304) T ss_pred hhhhhcCcEEEEEEEEeccEeecccceEEEEecC Confidence 111222 5655553 3 34444565555555 No 49 >protein:vir:94142 Length: 304 # NCBI annotation: ORF013 # Family: family:all:507 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240234;genbank:gi:66395898;genbank:GeneID:5133311 Probab=98.01 E-value=1.1e-06 Score=53.27 Aligned_cols=281 Identities=12% Similarity=0.088 Sum_probs=150.4 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYT 79 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~ia 79 (341) |. -.+. ..-++. ...-.+.|-++..+.+++.+.+.+.+++.++++++.--. -++-.-.+++.+ T Consensus 1 ma----~~~~-----------~~~~~~~t~~gg~lip~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~-~~ip~~~~~~~a 64 (304) T protein:vir:94 1 MA----TPTY-----------TPGNVILSDFKNGVIPAEQGTLIMKDIMANSAIMKLAKNEPMTAQK-KKFTYLAKGVGA 64 (304) T ss_pred Cc----cccc-----------ccccccccCCCceecchhHHHHHHHHHHhccchhhhcceeeccCCc-eEEEEEeCCcce Confidence 21 1111 111121 122356788888899999999999999999999876422 222222233333 Q ss_pred CCCCC-Ccc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 80 GRKAG-GRF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 80 grt~t-~r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) .-... +.. ...+.++...+..++.---+.|+.+.|. .+ ..+|+..+.+.+.+.++.-.-.-.+||.-....+. T Consensus 65 ~~v~E~~~~~~~~~~~~~i~~~~~k~~~~~~iS~ell~-ds----~~~l~~~i~~~l~~~ia~~~d~~~l~G~g~~~~~~ 139 (304) T protein:vir:94 65 YWVSETERIQTSKPEYAQAEMEAKKIGVIIPLSKEFLK-WT----AKDFFNEVKPLIAEAFYKAFDQAVIFGTKSPYNTS 139 (304) T ss_pred EEeecCcccccccceeeEEEEEEEEEEEeehhhHHHHh-cc----hHHHHHHHHHHHHHHHHHHHHhhheeccCCCcccc Confidence 32221 111 1224556666666665555677766554 22 36899999999999999999999999954222211 Q ss_pred hhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhH Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAK 237 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~ 237 (341) ...+..+..+. ..+....++.-.|.+|-.|+.. + .+.+++.. +++|.+..++. ... T Consensus 140 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~----l-~~~~~~~~--~~v~~~~~~~~-L~~ 195 (304) T protein:vir:94 140 TSGKPLVEGAE----------------EKGNVVTDTNNLYVDLSALMAT----I-EDEELDPN--GVLTTRSFRSK-MRN 195 (304) T ss_pred ccccccccccc----------------ccccccccccchHHHHHHHHHH----h-hhccCCcC--EEEEcHHHHHH-HHH Confidence 11111111110 0111111233346666555433 3 33343332 68899987763 223 Q ss_pred HHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCC----EEEeccCCcEEEEecCcEEEEEEEccc----------ccc Q lcl|Aclame:pro 238 LYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNA----MVVTIPENLQVLTQHGTAQRKAKHESD----------RKR 303 (341) Q Consensus 238 l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~----ilVT~l~NLsIY~Q~gs~RR~~~d~~~----------r~r 303 (341) +-.....|- -+.-..++-|+|++..+++|... +++..++++- +...+..+-.+.++.. =+. T Consensus 196 lkd~~G~~l----~~~~~~~l~G~PV~~~~~~~~~~~~~~~~~gd~~~~~-~~~~~~~~i~~~~e~~~~~~~~~~~~g~~ 270 (304) T protein:vir:94 196 ALDANDRPL----FDANGNEIMGLPLSYTGADVYDKKKSLALMGDWDYAR-YGILQGIEYAISEDATLTTLQASDASGQP 270 (304) T ss_pred hhccCCcEe----ecCCCccccceeeEEecccccCCCCcEEEEEehhhEE-EEEecceEEEEeecceeeeecccccCccc Confidence 333322321 00002468899999999999665 8999999974 4444555544444431 111 Q ss_pred eecccc---ceeeccc-h--heeeeccccccCCc Q lcl|Aclame:pro 304 SKTHTG---AWKVTQW-V--CWKRSPLTTQKKST 331 (341) Q Consensus 304 ve~y~s---~YvVEdy-g--~~~~~~~~~~~~~~ 331 (341) +--|+. +|.+|.+ | ......|...+.++ T Consensus 271 ~~~f~~~~~~~r~~~r~~~~v~~~~a~~~l~~a~ 304 (304) T protein:vir:94 271 VSLFERDMFALRATMHIAYMNVKPEAFATLKPTE 304 (304) T ss_pred hhhhhcCcEEEEEEEEeccEeecccceEEEEecC Confidence 111222 5655553 3 34444565555555 No 50 >protein:vir:95376 Length: 425 # NCBI annotation: phage major capsid protein # Family: family:all:635 # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764476;genbank:gi:115334630;genbank:GeneID:5179263 Probab=98.00 E-value=1.6e-06 Score=52.43 Aligned_cols=298 Identities=9% Similarity=0.039 Sum_probs=146.2 Q ss_pred CCccccHHHHHHHH-----------HHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccce Q lcl|Aclame:pro 1 MSQILTQSAREYMD-----------NFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQV 69 (341) Q Consensus 1 m~~~M~~~tr~~~~-----------~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~ 69 (341) +.+ .+...+..+. .+..... ......+-.+.|-+.....+.+.+++.+.+++.++++++.- +.+ T Consensus 108 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gg~~vP~~~~~~Ii~~l~~~~~i~~~~~~~~~~g--~~~ 182 (425) T protein:vir:95 108 VEM-NRLQVREMLKTGEYYKRSEVVEFYEKFR--NLRAVAGGELTIPEVVVNRIMDIMGDYTTLYPLVDKIRVKG--TTR 182 (425) T ss_pred HHH-HHHHHHHHHhhhhhhhhhHHHHHHHHHH--hhcccccCceeccHHHHHHHHHHHHhhhhHHHhhceeecCc--eeE Confidence 110 0011111110 0111100 00111223455555678889999999999999999988742 223 Q ss_pred eecccccccCCCCCCC-ccc-cc-cCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHh Q lcl|Aclame:pro 70 VDVGVSGLYTGRKAGG-RFT-KQ-VGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIG 146 (341) Q Consensus 70 i~lgv~g~iagrt~t~-r~~-r~-~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IG 146 (341) +-+-.+++-++=+..+ ..+ .. ..++...+..++.---+.|+.++|+... ++|...+.+.+.+.++.-.-.-- T Consensus 183 ip~~~~~~~a~~v~E~~~~~~~~~~~f~~i~l~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~~i~~~~d~~i 257 (425) T protein:vir:95 183 ILVDTDTSPATWIEQSGALPTGDVGTIASIDFDGFKVGKVTFVDNYLLQDSI-----INLDDYVTKKIARAIAKALDLAI 257 (425) T ss_pred EEEecCCccccccccccccccccccccceeeeeheeeeeeehhhHHHHhccH-----HHHHHHHHHHHHHHHHHHHHHHh Confidence 3332223333222211 111 11 1344444444444444777878887766 47999999999999988888888 Q ss_pred hccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEe Q lcl|Aclame:pro 147 WNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFV 226 (341) Q Consensus 147 fnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVviv 226 (341) ++|+-.. ..-|+ |+|..+-.. ...+.......|.+|..++. ++...++....++++| T Consensus 258 l~G~G~~-----~~~p~------Gil~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~ 314 (425) T protein:vir:95 258 VKGTGAA-----NKQPL------GIIPSLPPE-------NQVTVEADNNLLKNLVKQIG-----LIDTGDDSVGEIVAVM 314 (425) T ss_pred hccCCCC-----ccccc------eeecccccc-------cccccccccchHHHHHHHHH-----hhhhhccccCceEEEE Confidence 8995311 11122 565321110 01112233445666665432 3456666677888888 Q ss_pred ChHHHHHHH--hHHH-hccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccc Q lcl|Aclame:pro 227 GSGLIGAAQ--AKLY-DKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKR 303 (341) Q Consensus 227 G~dLla~~~--~~l~-n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~r 303 (341) .+.-+-..- ..++ .....+--...+ .-..++-|+|++.-+++|++.+++=.+++..|.. ++...-...++. . T Consensus 315 ~~~~~~~~l~~l~~~kd~~g~~i~~~~~-~~~~~l~G~pvv~~~~~~~~~i~~Gd~~~~~~~~-~~~~~i~~~~~~---~ 389 (425) T protein:vir:95 315 KRSTYYNRLVEFSIQVDSNGNVVGKLPN-LRTPDLLGLRVVFNNFLDDDTVLFGEFEQYTLVE-RENITIDSSTHV---K 389 (425) T ss_pred eChHHHHHHHHHHhhcCCCCceeeccCC-CCCccccceeeEEcCcCCCccEEEEecccEEEEe-ecceEEEeeccc---c Confidence 764221111 1111 111111100000 0024677999999999999999999999854443 343333332221 1 Q ss_pred eeccccceeeccc-h--heeeeccccccCCcchhcc Q lcl|Aclame:pro 304 SKTHTGAWKVTQW-V--CWKRSPLTTQKKSTSALNH 336 (341) Q Consensus 304 ve~y~s~YvVEdy-g--~~~~~~~~~~~~~~~a~~~ 336 (341) +..-.-+|.++.+ + ......|...+..+|.--. T Consensus 390 f~~~~~~~~~~~r~d~~~~~~~a~~~~~i~~~~~g~ 425 (425) T protein:vir:95 390 FTEDQTAFRGKGRFDGKPVKPEAFVLVTITDPVQGA 425 (425) T ss_pred cccCceEEEEEEeeCcEeecccceEEEEecCcCCCC Confidence 1111125665543 2 2223334333333221111 No 51 >protein:vir:7855 Length: 497 # NCBI annotation: gp12 # Family: family:all:585 # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817462;genbank:gi:29565891;genbank:GeneID:1259081 Probab=97.96 E-value=2.5e-06 Score=51.27 Aligned_cols=319 Identities=9% Similarity=-0.016 Sum_probs=145.9 Q ss_pred CCccccH------------HHHHHHHHHHHHHHH--hhCc-hhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhh Q lcl|Aclame:pro 1 MSQILTQ------------SAREYMDNFAQQLAK--SYGV-SNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQI 65 (341) Q Consensus 1 m~~~M~~------------~tr~~~~~y~~~~A~--~ngv-~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~ 65 (341) +...++. +.+..+..+....+. .+.+ .+..-.+.|-|.+...+++.+++.+.+++.++++++.-- T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~vp~~~~~~ii~~~~~~~~i~~l~~~~~~~~~ 193 (497) T protein:vir:78 114 FDVSFNVSAKAADPGTAAAELMGAFADGETAPAAIGQNPFGSTGTFAPGILPTFLPGIVEQLFYELSLADLISSRPVTSP 193 (497) T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhhhhhhHHHHHhhhcccCcccccccchhhhHHHHHHHHhhhhHHhhccccccCCC Confidence 1111111 111112222211111 1111 112234678899999999999999999999999988753 Q ss_pred ccceeecccccccCCCCCC-Ccc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 66 EGQVVDVGVSGLYTGRKAG-GRF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIM 143 (341) Q Consensus 66 ~Ge~i~lgv~g~iagrt~t-~r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i 143 (341) ...........+-++-... +.. ...+.++...+..++.---+.|+-++|+.. |+++..|.+.+.+.++.=.- T Consensus 194 ~~~~~~~~~~~~~a~wv~E~~~~~~s~~~f~~i~~~~~k~a~~~~iS~ell~d~------~~l~~~i~~~l~~~i~~~~d 267 (497) T protein:vir:78 194 NLSYLTESAAHNNAAAVAEAGTYPFSSEEFARVYEQVGKVANALTITDEGLRDA------PELFNFVQGRLLEGIQRKEE 267 (497) T ss_pred ceEEEEEcCCCCcceeeccCcccccccccceeeEeeeeeeEeecHhHHHHHHhH------HHHHHHHHHHHHHHHHHHHH Confidence 3222211111112221111 111 122345556666666555566766666542 46888889999888885444 Q ss_pred HHhhccccccc----------cCChh-------------------hccchhhhhhhHHHHHHHhhccccccc--cceeec Q lcl|Aclame:pro 144 RIGWNGVSAEA----------DTDPS-------------------ANPLGQDVNEGWIAFVKNRKASQVVDV--DVYFDE 192 (341) Q Consensus 144 ~IGfnG~s~A~----------~TD~~-------------------anPllqDVNkGWlq~~Re~~~~~v~~~--~~~~~g 192 (341) .--++|+-... .+.+. ..-....+|..|+..++..+....... +.+..+ T Consensus 268 ~~~l~G~G~~~p~Gil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (497) T protein:vir:78 268 VQLLAGGGYPGVNGLLQRSTGFTASSASSLFGATSATVSNVKFPADGTNGAFVGQDTVASLKYGRVVTGAAGSGSGVAGS 347 (497) T ss_pred HHhhcCCCcccccccccccccccccccccchhhhhhhhhhhhhhcccccchhhhhhHHHHHHHHHhhhhhhhhccchhcc Confidence 44444421000 00000 001223455566666665443222211 112222 Q ss_pred CCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHHh-ccChh-----HHHHHHHH--HHHhhcCcccc Q lcl|Aclame:pro 193 TNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYD-KADKP-----SEQIAAQK--LDKTIAGRPAY 264 (341) Q Consensus 193 ~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~n-~~~~p-----tE~~a~~~--i~k~igGlpa~ 264 (341) ...++..++- +.+++..+.. -....++ +++|.+.-+. .++++. ....| .-..+.+. ..+++-|+|++ T Consensus 348 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~~-~~vmn~~~~~--~l~~lkd~~G~~i~~~~~~~~~~~~~~~~~~l~G~pV~ 422 (497) T protein:vir:78 348 YPTAAEIAEN-VFDAFVDIQL-TLFQTPN-AVVMNPRDWE--LLRLTKDANGQYMGGNFFGNAYGNPVNGGKNIWGVPVV 422 (497) T ss_pred ccchhhhhhH-HHHHHhhhhh-hcccCCC-eEEEchHHHH--HHHHhhcCCCceeccCcccccccccccCCceeeceeeE Confidence 2333333442 2333322222 2223345 4566664332 233332 21111 11111121 23578899999 Q ss_pred cCCcCCCCCEEEeccCCcEEEE-ecCcEEEEEEEcccccceeccccceeec--------cchheeeeccccccCCc Q lcl|Aclame:pro 265 VPPFLPDNAMVVTIPENLQVLT-QHGTAQRKAKHESDRKRSKTHTGAWKVT--------QWVCWKRSPLTTQKKST 331 (341) Q Consensus 265 ~vPffP~~~ilVT~l~NLsIY~-Q~gs~RR~~~d~~~r~rve~y~s~YvVE--------dyg~~~~~~~~~~~~~~ 331 (341) ..|++|++.+++-.++...+.+ -++..+-.+-+. ..+.++.-.-+|.+| +-.+|....++.++.++ T Consensus 423 ~t~~~~~~~~~~Gd~~~~~~~i~~r~~~~v~~~~~-~~~~f~~n~v~~r~~~r~~~~v~~p~A~~~l~~~~~~~~~ 497 (497) T protein:vir:78 423 TTPLIPLGTILVGHFAPSVIQTARREGVTMQMTNS-NGTDFVDGKVTVRAEERLGLLVYRPSAFQLIQLKKGATGS 497 (497) T ss_pred ecCCCCCCceEEeecccceEEEEEecccEEEeecc-cchhhhcCcEEEEEEEeecceeeccccEEEEEecCCccCC Confidence 9999999999998887654432 334433332211 111111101144443 33345555554443333 No 52 >protein:vir:101650 Length: 497 # NCBI annotation: gp13 # Family: family:all:585 # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654768;genbank:gi:109302766;genbank:GeneID:4156084 Probab=97.96 E-value=2.5e-06 Score=51.27 Aligned_cols=319 Identities=9% Similarity=-0.016 Sum_probs=145.9 Q ss_pred CCccccH------------HHHHHHHHHHHHHHH--hhCc-hhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhh Q lcl|Aclame:pro 1 MSQILTQ------------SAREYMDNFAQQLAK--SYGV-SNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQI 65 (341) Q Consensus 1 m~~~M~~------------~tr~~~~~y~~~~A~--~ngv-~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~ 65 (341) +...++. +.+..+..+....+. .+.+ .+..-.+.|-|.+...+++.+++.+.+++.++++++.-- T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~vp~~~~~~ii~~~~~~~~i~~l~~~~~~~~~ 193 (497) T protein:vir:10 114 FDVSFNVSAKAADPGTAAAELMGAFADGETAPAAIGQNPFGSTGTFAPGILPTFLPGIVEQLFYELSLADLISSRPVTSP 193 (497) T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhhhhhhHHHHHhhhcccCcccccccchhhhHHHHHHHHhhhhHHhhccccccCCC Confidence 1111111 111112222211111 1111 112234678899999999999999999999999988753 Q ss_pred ccceeecccccccCCCCCC-Ccc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 66 EGQVVDVGVSGLYTGRKAG-GRF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIM 143 (341) Q Consensus 66 ~Ge~i~lgv~g~iagrt~t-~r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i 143 (341) ...........+-++-... +.. ...+.++...+..++.---+.|+-++|+.. |+++..|.+.+.+.++.=.- T Consensus 194 ~~~~~~~~~~~~~a~wv~E~~~~~~s~~~f~~i~~~~~k~a~~~~iS~ell~d~------~~l~~~i~~~l~~~i~~~~d 267 (497) T protein:vir:10 194 NLSYLTESAAHNNAAAVAEAGTYPFSSEEFARVYEQVGKVANALTITDEGLRDA------PELFNFVQGRLLEGIQRKEE 267 (497) T ss_pred ceEEEEEcCCCCcceeeccCcccccccccceeeEeeeeeeEeecHhHHHHHHhH------HHHHHHHHHHHHHHHHHHHH Confidence 3222211111112221111 111 122345556666666555566766666542 46888889999888885444 Q ss_pred HHhhccccccc----------cCChh-------------------hccchhhhhhhHHHHHHHhhccccccc--cceeec Q lcl|Aclame:pro 144 RIGWNGVSAEA----------DTDPS-------------------ANPLGQDVNEGWIAFVKNRKASQVVDV--DVYFDE 192 (341) Q Consensus 144 ~IGfnG~s~A~----------~TD~~-------------------anPllqDVNkGWlq~~Re~~~~~v~~~--~~~~~g 192 (341) .--++|+-... .+.+. ..-....+|..|+..++..+....... +.+..+ T Consensus 268 ~~~l~G~G~~~p~Gil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (497) T protein:vir:10 268 VQLLAGGGYPGVNGLLQRSTGFTASSASSLFGATSATVSNVKFPADGTNGAFVGQDTVASLKYGRVVTGAAGSGSGVAGS 347 (497) T ss_pred HHhhcCCCcccccccccccccccccccccchhhhhhhhhhhhhhcccccchhhhhhHHHHHHHHHhhhhhhhhccchhcc Confidence 44444421000 00000 001223455566666665443222211 112222 Q ss_pred CCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHHh-ccChh-----HHHHHHHH--HHHhhcCcccc Q lcl|Aclame:pro 193 TNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYD-KADKP-----SEQIAAQK--LDKTIAGRPAY 264 (341) Q Consensus 193 ~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~n-~~~~p-----tE~~a~~~--i~k~igGlpa~ 264 (341) ...++..++- +.+++..+.. -....++ +++|.+.-+. .++++. ....| .-..+.+. ..+++-|+|++ T Consensus 348 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~~-~~vmn~~~~~--~l~~lkd~~G~~i~~~~~~~~~~~~~~~~~~l~G~pV~ 422 (497) T protein:vir:10 348 YPTAAEIAEN-VFDAFVDIQL-TLFQTPN-AVVMNPRDWE--LLRLTKDANGQYMGGNFFGNAYGNPVNGGKNIWGVPVV 422 (497) T ss_pred ccchhhhhhH-HHHHHhhhhh-hcccCCC-eEEEchHHHH--HHHHhhcCCCceeccCcccccccccccCCceeeceeeE Confidence 2333333442 2333322222 2223345 4566664332 233332 21111 11111121 23578899999 Q ss_pred cCCcCCCCCEEEeccCCcEEEE-ecCcEEEEEEEcccccceeccccceeec--------cchheeeeccccccCCc Q lcl|Aclame:pro 265 VPPFLPDNAMVVTIPENLQVLT-QHGTAQRKAKHESDRKRSKTHTGAWKVT--------QWVCWKRSPLTTQKKST 331 (341) Q Consensus 265 ~vPffP~~~ilVT~l~NLsIY~-Q~gs~RR~~~d~~~r~rve~y~s~YvVE--------dyg~~~~~~~~~~~~~~ 331 (341) ..|++|++.+++-.++...+.+ -++..+-.+-+. ..+.++.-.-+|.+| +-.+|....++.++.++ T Consensus 423 ~t~~~~~~~~~~Gd~~~~~~~i~~r~~~~v~~~~~-~~~~f~~n~v~~r~~~r~~~~v~~p~A~~~l~~~~~~~~~ 497 (497) T protein:vir:10 423 TTPLIPLGTILVGHFAPSVIQTARREGVTMQMTNS-NGTDFVDGKVTVRAEERLGLLVYRPSAFQLIQLKKGATGS 497 (497) T ss_pred ecCCCCCCceEEeecccceEEEEEecccEEEeecc-cchhhhcCcEEEEEEEeecceeeccccEEEEEecCCccCC Confidence 9999999999998887654432 334433332211 111111101144443 33345555554443333 No 53 >protein:vir:1025 Length: 408 # NCBI annotation: capsid protein # Family: family:all:21 # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076679;genbank:gi:13095788;genbank:GeneID:920362 Probab=97.94 E-value=6.9e-06 Score=48.89 Aligned_cols=292 Identities=12% Similarity=0.096 Sum_probs=149.6 Q ss_pred CCcccc---HHHHHHHHHHHHHHHHhhC---------chhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccc Q lcl|Aclame:pro 1 MSQILT---QSAREYMDNFAQQLAKSYG---------VSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQ 68 (341) Q Consensus 1 m~~~M~---~~tr~~~~~y~~~~A~~ng---------v~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge 68 (341) ++.... ...+..|.+|+........ ..+..-.+.|-+.+.+.+.+.+.+.+.+++.++++++....|. T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~t~~~gg~~vP~~~~~~Ii~~~~~~~~l~~~~~~~~~~~~~~~ 161 (408) T protein:vir:10 82 LNKSENELKDKFVKDFVNMVRNPMAFMNTVSSKTETSGSDSAAGLTIPQDIRTMINTLVRQYDSLQQYVRVESVSTSNGS 161 (408) T ss_pred cccchhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhcccccCCceeccHhHHHHHHHHHHhhchhhhhcceeeccCCcce Confidence 221111 2223333334322111100 1112235777667788999999999999999999999988887 Q ss_pred eeecccc--cccCCCCCC-Cccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 69 VVDVGVS--GLYTGRKAG-GRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIM 143 (341) Q Consensus 69 ~i~lgv~--g~iagrt~t-~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i 143 (341) ....-.+ .+.+.-... +..+ ..+.++...+.+++.---+.|+.++|+.. ..+|+..+.+.+.+.++.-.- T Consensus 162 ~~~~~~~~~~~~a~~v~E~~~~~~~~~~~~~~i~~~~~k~~~~~~iS~ell~ds-----~~~l~~~i~~~l~~~~~~~~~ 236 (408) T protein:vir:10 162 RVYEKWTDVTPLTVMDAEDGKIPDLDNPQLTIIKYLIKRYAGIITATNTSLKDT-----AENILAWLSSWIAKKVVVTRN 236 (408) T ss_pred EEEeeccccccceeeecCccccccccCcceeeEEeeeeeEEeeehhHHHHHhhc-----hHHHHHHHHHHHHHHHHHHHH Confidence 6543221 122222221 1222 22356667777777665566766666643 258999999999998887665 Q ss_pred HHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeE Q lcl|Aclame:pro 144 RIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLT 223 (341) Q Consensus 144 ~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLV 223 (341) .--++|+-.... .++.. +.|.++ +++...+++.|+. .-+ T Consensus 237 ~~il~g~g~~~~-----------------------------------~~~~~---~~~~l~-~~~~~~~~~~~~~--~a~ 275 (408) T protein:vir:10 237 QAIIEVMKAAPK-----------------------------------KPTIA---KFDDVI-TMINTAVDPAIIA--TSS 275 (408) T ss_pred HHHhhccccccc-----------------------------------ccccc---cHHHHH-HHHHHhhhhhhcc--CCE Confidence 555566331100 01112 344443 3343446777764 458 Q ss_pred EEeChHHHHHHHhHHHh-ccChhHHHH-HHHHHHHhhcCcccccCC--cCCCCC-----EEEeccCCcEEEEecCcEEEE Q lcl|Aclame:pro 224 VFVGSGLIGAAQAKLYD-KADKPSEQI-AAQKLDKTIAGRPAYVPP--FLPDNA-----MVVTIPENLQVLTQHGTAQRK 294 (341) Q Consensus 224 vivG~dLla~~~~~l~n-~~~~ptE~~-a~~~i~k~igGlpa~~vP--ffP~~~-----ilVT~l~NLsIY~Q~gs~RR~ 294 (341) ++|.+..+. .+..+. ....|-=.- ...--..++-|+|++.++ .+|..+ +++-.+++.-..+.++...=. T Consensus 276 ~v~n~~~~~--~l~~lkd~~G~~i~~~~~~~~~~~~l~G~PV~~~~~~~~~~~~~~~~~i~~gd~~~~~~~~~~~~~~v~ 353 (408) T protein:vir:10 276 LLTNQSGLN--KLALVKTAEGKYLLEPDPTKPNSYLIKGKQVIVVADRWLPNTGSTVYPLYYGDMSQAITLFDRENMSLL 353 (408) T ss_pred EEEcHHHHH--HHHHhhccCCceEeccCcCCCCCceecceeeEEecccccCccCCCceEEEEEehhccEEEEEecceEEE Confidence 999998765 344332 122221000 000012478999999876 577655 788888876544444444433 Q ss_pred EEEcccccceecccc--------ceeeccchheeeeccccccCCcchhcccccCC Q lcl|Aclame:pro 295 AKHESDRKRSKTHTG--------AWKVTQWVCWKRSPLTTQKKSTSALNHRSERN 341 (341) Q Consensus 295 ~~d~~~r~rve~y~s--------~YvVEdyg~~~~~~~~~~~~~~~a~~~~~~~~ 341 (341) +.+.. .+.++...- +.+|-+..+|..+.++..+.+++.+---+--. T Consensus 354 ~~~~~-~~~f~~~~~~~r~~~r~d~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 407 (408) T protein:vir:10 354 PTNIG-AGAFETDTTKIRVIDRFDVKATDSEALVAGSFSAIADQVGNFKTTTSTA 407 (408) T ss_pred Ecccc-cchhhcCceEEEEEEeeccEEeccccEEEEEeeccccCCCCCCCCCccc Confidence 33222 122221111 33344444455555544332222111111111 No 54 >protein:vir:7771 Length: 330 # NCBI annotation: gp17 # Family: family:all:507 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817605;genbank:gi:29566035;genbank:GeneID:1259229 Probab=97.92 E-value=1.2e-06 Score=53.04 Aligned_cols=293 Identities=9% Similarity=0.037 Sum_probs=149.0 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) |. -+.. .+ .+.....+....|-|.+.+.+.+.+++.+-+++.++++++..-.. ++-.-.+++-++ T Consensus 1 m~----~~~~---~a-------~~~~~t~~~g~~i~~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~-~~p~~~~~~~a~ 65 (330) T protein:vir:77 1 MA----GSTV---PS-------TQVALTGDFSAFLTPEQSQDYFAEIEKTSIVQRIARKVPMGPTGI-SIPHWTGAVSAS 65 (330) T ss_pred Cc----cccc---ch-------hhccccCCCcceechhHHHHHHHHHHhccchhhhcceeeccCCce-EEEEEcCCccee Confidence 21 1111 00 001112223345788999999999999999999999988764332 222222333344 Q ss_pred CCCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCCh Q lcl|Aclame:pro 81 RKAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDP 158 (341) Q Consensus 81 rt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~ 158 (341) -...+ .....+.++...+.+++.---+.|+.+.|+. + .++|+..+.+.+.++++.-.-.--|||+-. T Consensus 66 ~v~Eg~~~~~~~~~f~~i~~~~~k~~~~~~is~ell~d-s----~~~~~~~i~~~l~~ai~~~~~~~~l~G~g~------ 134 (330) T protein:vir:77 66 WTGEAERKPITKGSFGKQELEPVKITTIFAESAEVVRL-N----PLNYLNTMRTKIAEAIALKFDAAAIHGIDK------ 134 (330) T ss_pred EecCCCccccccceeeEEEEeEEEEEEeehhhHHHHhc-c----hHHHHHHHHHHHHHHHHHHHHHHhhcccCC------ Confidence 33221 1122345677788888877777887776642 2 368999999999999999998888999541 Q ss_pred hhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHH Q lcl|Aclame:pro 159 SANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKL 238 (341) Q Consensus 159 ~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l 238 (341) .+|. .|++..... ...........+.+..-..+|. +.+++..+ ...++ ..-+++|.+..+.. ...| T Consensus 135 -~~~~-----~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~-~~~~~--~~~~~vmn~~~~~~-l~~l 200 (330) T protein:vir:77 135 -PSAF-----KGYLAETTK---VVSLADTNLTTASGPQGNAYLA-VNNALSLL-VNSGK--KWTGTLLDNVTEPI-LNTA 200 (330) T ss_pred -CCcc-----ccccccccc---cceeecccccccccccchhHHH-HHHHHHhh-hhcCC--CccEEEEcHHHHHH-HHHH Confidence 1111 345443211 1111111111112222112232 22333322 33333 33478999987752 2223 Q ss_pred HhccChhH--HHHHH----HHHHHhhcCcccccCCcCCCCC------EEEeccCCcEEEEecCcEEEEEEEccc------ Q lcl|Aclame:pro 239 YDKADKPS--EQIAA----QKLDKTIAGRPAYVPPFLPDNA------MVVTIPENLQVLTQHGTAQRKAKHESD------ 300 (341) Q Consensus 239 ~n~~~~pt--E~~a~----~~i~k~igGlpa~~vPffP~~~------ilVT~l~NLsIY~Q~gs~RR~~~d~~~------ 300 (341) -.....|- +.... ..-..++-|+|++..+++|++. +++..+++.-|..+.| ..-.+.++.. T Consensus 201 kd~~G~~l~~~~~~~~~~~~~~~~~l~G~PV~~~~~~p~~~~~~~~~~~~gd~s~~~i~~~~~-~~i~~~~e~~~~~~~~ 279 (330) T protein:vir:77 201 VDGNGRPLFVESTYTEQVGAIREGRILGRPTYVADNVVNGTVGNRVVGVMGDFSQVIWGQIGG-LSFDVTDQATLDFGEE 279 (330) T ss_pred hccCCceeecCccccccccccCCceecceeeEEeccccCCCCCCccEEEEEecceEEEEEecC-cEEEEeecceeeeccc Confidence 22222221 00000 0112478899999999999876 8889999986655554 2222222211 Q ss_pred ------ccceecccc---ceee--------ccchheeeeccccccCCcchhccccc Q lcl|Aclame:pro 301 ------RKRSKTHTG---AWKV--------TQWVCWKRSPLTTQKKSTSALNHRSE 339 (341) Q Consensus 301 ------r~rve~y~s---~YvV--------Edyg~~~~~~~~~~~~~~~a~~~~~~ 339 (341) ...+-.|+. +|.+ -+-.||+... .+++--....| T Consensus 280 ~~~~~~~~~~~~f~~~~~~~r~~~r~d~~v~~~~a~~~i~-----~~~~~~~~~~~ 330 (330) T protein:vir:77 280 QGGVWVPKLISLWQHNMVAVRCEAEFAFMVNDKDAFVKLT-----DQVAGTDPEEE 330 (330) T ss_pred ccccccccccchhhcCcEEEEEEEEeccEEecccceEEEE-----eccCCcCCCCC Confidence 111111211 3333 3333443332 22222222222 No 55 >protein:vir:104085 Length: 320 # NCBI annotation: gp17 # Family: family:all:507 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655596;genbank:gi:109392467;genbank:GeneID:4156953 Probab=97.92 E-value=2.5e-06 Score=51.29 Aligned_cols=287 Identities=10% Similarity=0.043 Sum_probs=150.7 Q ss_pred cccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCC Q lcl|Aclame:pro 4 ILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKA 83 (341) Q Consensus 4 ~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~ 83 (341) |+...+ |+.=...++... +....-.|.|.+.+.+++.+.+.|.++++++++++.-... ++-.-.+++-++-.. T Consensus 1 ~~~~~~---~~~~~~~~~~t~---~~~~~~~ip~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~-~~p~~~~~~~a~~v~ 73 (320) T protein:vir:10 1 MAAGTA---FQVDHAQIAQTG---DTMFKGYLEPEQAKDYFAEAEKTSIVQQFAQKVPMGTTGQ-KIPHWIGDVSAQWIG 73 (320) T ss_pred CCCCcc---CCHHHHHhhccc---cccccccccHHHHHHHHHHHHhccchhhhcceeeccCCce-EEEEEeCCcceEEec Confidence 122211 221111122211 1112224899999999999999999999999998763222 222222333333322 Q ss_pred CC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhhc Q lcl|Aclame:pro 84 GG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSAN 161 (341) Q Consensus 84 t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~an 161 (341) .+ .....+.++..++.+++.---+.|+.+.|+. + .++++..+.+.+.++++...-.--++|+-....+. T Consensus 74 E~~~~~~~~~~f~~v~~~~~k~~~~~~is~ell~d---s--~~~l~~~i~~~l~~a~a~~~d~a~l~G~g~~~~~~---- 144 (320) T protein:vir:10 74 EGDMKPITKGNMTSQNIAPHKIATIFVASAETVRA---N--PANYLGTMRTKVATAFAMAFDSAALNGTDSPFPTY---- 144 (320) T ss_pred CCccccccccceeEEEEeeEEEEEeehhhHHHHhc---C--hHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcc---- Confidence 21 1122345677788888877778887776662 1 36899999999999999888888899954211110 Q ss_pred cchhhhhhhHHHHHHHhhccccccccce---eecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHH Q lcl|Aclame:pro 162 PLGQDVNEGWIAFVKNRKASQVVDVDVY---FDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKL 238 (341) Q Consensus 162 PllqDVNkGWlq~~Re~~~~~v~~~~~~---~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l 238 (341) +....+...+ ...+..+...+|.+..++.. +++..+++ ..+++|.+.... +++. T Consensus 145 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~v~n~~~~~--~L~~ 201 (320) T protein:vir:10 145 ------------------LAQTTKSVSLADPGGATASDLTAYDAVAVNGLS-LLVNAKKK--WTHTLLDDIVEP--ILNG 201 (320) T ss_pred ------------------cccccccccceecccccccccccHHHHHHHHHh-hhhcccCC--CcEEEEcHHHHH--HHHH Confidence 1111111111 11233333445655666554 44655554 458899998765 2333 Q ss_pred H-hccChh------HHHHHHHHHHHhhcCcccccCCcCCCCCE--EEeccCCcEEEEecCcEEEEEEEccccc------- Q lcl|Aclame:pro 239 Y-DKADKP------SEQIAAQKLDKTIAGRPAYVPPFLPDNAM--VVTIPENLQVLTQHGTAQRKAKHESDRK------- 302 (341) Q Consensus 239 ~-n~~~~p------tE~~a~~~i~k~igGlpa~~vPffP~~~i--lVT~l~NLsIY~Q~gs~RR~~~d~~~r~------- 302 (341) + .....+ ...........++-|+|++..+++|++.. ++..++++-| ...+..+-.+.++.... T Consensus 202 lkd~~G~~l~~~~~~~~~~~~~~~~~i~g~pv~~~~~~~~~~~~~~~gd~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~ 280 (320) T protein:vir:10 202 AKDKNGRPLFIESTYTDENSPFRAGRIVSRPTILSDHVADGTTVGYMGDFRNVIW-GQVGGLSFDVTDQATLNLGTPTEP 280 (320) T ss_pred hhccCCceeeccccccCccccccCceeeeeeeEecCCCCCCceEEEEeecceEEE-EEecCeEEEEeecceeeecccccc Confidence 3 221111 00001111235789999999999999974 5678888754 33444433333322110 Q ss_pred -ceecc--cc-ceeec--------cchheeeeccccccCCcch Q lcl|Aclame:pro 303 -RSKTH--TG-AWKVT--------QWVCWKRSPLTTQKKSTSA 333 (341) Q Consensus 303 -rve~y--~s-~YvVE--------dyg~~~~~~~~~~~~~~~a 333 (341) .+..| +. +|.+| +-.||.... .+-+++| T Consensus 281 ~~~~~f~~~~~~~r~~~~~d~~v~~~~a~~~l~---~~~ap~~ 320 (320) T protein:vir:10 281 NFVSLWQHNLVAVRVEAEYAFHNNDKDAFVKLT---NVVTPDA 320 (320) T ss_pred ccchhhhcCcEEEEEEEeeccEEecccceEEEE---eccCCCC Confidence 11111 11 34433 333333322 1223444 No 56 >protein:vir:81160 Length: 371 # NCBI annotation: major capsid protein # Family: family:all:21 # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285811;genbank:gi:148747732;genbank:GeneID:5247203 Probab=97.90 E-value=3.3e-06 Score=50.62 Aligned_cols=281 Identities=13% Similarity=0.146 Sum_probs=151.8 Q ss_pred CCccccHHHHHHHHHHHHH-HHHhhCch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccce-eecccccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQ-LAKSYGVS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQV-VDVGVSGL 77 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~-~A~~ngv~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~-i~lgv~g~ 77 (341) -...++...+..|..++.. ........ ..+-.+.|-+.+...+++.+.+.|.+++.+++++++...|.. +..+.+++ T Consensus 67 ~~~~~~~~~~~~~~~~l~~~~~~a~~~~t~~~gg~~vP~~~~~~ii~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (371) T protein:vir:81 67 PTVQVKENEVEAFVNHIRTRFRNAMSEGSNQDGGYTVPQDIQTRINELRESKDALQNLITVEPVTTLSGSRVFKKRSQQT 146 (371) T ss_pred cchhhHHHHHHHHHHHHHHHHHHhhccCCCccCceeecHhHHHHHHHHHHhhhhhhhhceeeeccCCceeEEEEeecCCc Confidence 1112444455566666543 22222221 223456677778899999999999999999999998766664 33333333 Q ss_pred cCCCCCCC-ccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccc Q lcl|Aclame:pro 78 YTGRKAGG-RFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEA 154 (341) Q Consensus 78 iagrt~t~-r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~ 154 (341) -++-...+ ..+ ..+.++.....+++.---+.|+.+.|+.-. ++++..+.+.+.+.++.-.-..-++|+.... T Consensus 147 ~a~~v~Eg~~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~a~~~~~~~~i~~g~g~~~ 221 (371) T protein:vir:81 147 GFVEVAEGAAIGEKATPQFTLLQYQVKKYAGFFRVTNELLNDST-----EAIVNTLVRWIGDESRVTRNGLIINVLNTKA 221 (371) T ss_pred ceeeeccccccccccccceeeEEeeeeEEEEeehhhHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhccccc Confidence 33332222 222 224566666777766666788878776433 5899999999999887665555555533211 Q ss_pred cCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHH Q lcl|Aclame:pro 155 DTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAA 234 (341) Q Consensus 155 ~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~ 234 (341) | ..... .|.+.. ++...+++.++. ..+++|.+...+ T Consensus 222 -------~-----------------------------~~~~~---~~~i~~-~~~~~l~~~~~~--~a~~vmn~~~~~-- 257 (371) T protein:vir:81 222 -------K-----------------------------TAIAD---LDGLKQ-IINVQLDPVFRS--TSSVIVNQDAFN-- 257 (371) T ss_pred -------c-----------------------------ccccc---HHHHHH-HHHhhcchhhhc--CCEEEEcHHHHH-- Confidence 0 01122 333322 233346777764 458889987655 Q ss_pred HhHHHh-ccChhHHH-HHHHHHHHhhcCcccccCCcCCCC------------CEEEeccCC-cEEEEecCcEEEEEEEcc Q lcl|Aclame:pro 235 QAKLYD-KADKPSEQ-IAAQKLDKTIAGRPAYVPPFLPDN------------AMVVTIPEN-LQVLTQHGTAQRKAKHES 299 (341) Q Consensus 235 ~~~l~n-~~~~ptE~-~a~~~i~k~igGlpa~~vPffP~~------------~ilVT~l~N-LsIY~Q~gs~RR~~~d~~ 299 (341) .+..+- ....|-=. ........++-|+|++..+++|.+ .+++=.+++ ..++.+.|.. =.+ ++. T Consensus 258 ~L~~lkd~~g~~l~~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~~~~~~~~~~i~~Gd~~~~~~~~~~~~~~-i~~-~~~ 335 (371) T protein:vir:81 258 WLDTLKDQNGQYLLQPSISSPTGRQLLGLPVVIVSNKVLANRVDGGTGAQFAPIIVGDLKEAVVMFDRQRTE-IMS-SNV 335 (371) T ss_pred HHHHhhccCCCeeeecccCCCCCceecceeEEEecccccCccccccccCCcceEEEEehhceEEEEeecceE-EEE-ecc Confidence 244332 21122000 000011257889999999999854 355555665 3343343322 111 222 Q ss_pred cccceeccccceeeccc---hheeeeccccccCCcc Q lcl|Aclame:pro 300 DRKRSKTHTGAWKVTQW---VCWKRSPLTTQKKSTS 332 (341) Q Consensus 300 ~r~rve~y~s~YvVEdy---g~~~~~~~~~~~~~~~ 332 (341) ..+.++...-.|.+|-+ ++.....|..++.+++ T Consensus 336 ~~~~f~~~~v~~~~~~r~d~~~~~~~a~~~~~~~~A 371 (371) T protein:vir:81 336 AMDAFETDATLWRAIERMDVKMRDDEAFVFGEVQLA 371 (371) T ss_pred ccchhhcCceEEEEEEeeccEEecccceEEEEEecC Confidence 22233221225555442 3444445666665555 No 57 >protein:vir:100884 Length: 389 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358764;genbank:gi:78000028;genbank:GeneID:3726155 Probab=97.89 E-value=1.2e-05 Score=47.62 Aligned_cols=279 Identities=10% Similarity=0.047 Sum_probs=143.4 Q ss_pred CCccccHHHHHHHHHHHHHHH----HhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeeccc-c Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLA----KSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGV-S 75 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A----~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv-~ 75 (341) ++..-....+..|..|+..-. ...+.....-.|.|-+.+.+.+.+.+.+.+.+++.++++++....|......- + T Consensus 83 ~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~t~~~gg~~vP~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (389) T protein:vir:10 83 LSKKPIDAKKKAINDFIHSHGKVIDATSKVTSTEAGVLIPEEIIYDPTAEVNSVVDLSTLVTKTPVTTPKGTYPILKRAT 162 (389) T ss_pred cchhHHHHHHHHHHHHhhcchhhhhhhcccccCCcceeehHHHHHHHHHHHHhhhhHHhhcceeeccCCeeEEEEEecCC Confidence 222111223455666664221 11122223345777667788899999999999999999999877776544322 2 Q ss_pred cccCCCCCCCccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcccccc Q lcl|Aclame:pro 76 GLYTGRKAGGRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAE 153 (341) Q Consensus 76 g~iagrt~t~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A 153 (341) +..+.-...+..+ ..+.++...+..++.---+.|+.+.|+. + .++|+..+.+.+.+.++.-+-.-=.+|.. T Consensus 163 ~~~~~~~E~~~~~~~~~~~~~~i~~~~~k~~~~~~iS~ell~d-s----~~~l~~~i~~~la~~~~~~~~~~i~~g~~-- 235 (389) T protein:vir:10 163 DRFSSVAELAENPKLAEPEFNKVDWSVATYRGAIPLSEEAIAD-S----AVDLTALVGQSIKEKSVNTYNAMIAPVLQ-- 235 (389) T ss_pred CccccccccccccccccccceeeeeeheeeEeeehhhHHHHhh-h----hHHHHHHHHHHHHHHHHHHHHHHHhhhhc-- Confidence 2222111111111 2234455555555543335555555542 2 36899999999988887532211112211 Q ss_pred ccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHH Q lcl|Aclame:pro 154 ADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGA 233 (341) Q Consensus 154 ~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~ 233 (341) .+.. ++.....+.|.++ ++++..+++.+.. +++|.+..+. T Consensus 236 --------------------------------~~~~--~~~~~~~~~d~l~-~~~~~~~~~~~~a----~~~~n~~~~~- 275 (389) T protein:vir:10 236 --------------------------------SFTA--KKTTTDTLVDSLK-HILNVDLDPAYSR----ALVVTQSLFN- 275 (389) T ss_pred --------------------------------cccc--ccccccccHHHHH-HHHHhhhhhhhCc----EEEecHHHHH- Confidence 0000 0111123455443 4455456776632 7899998754 Q ss_pred HHhHHHh-ccChhHH-----HHHHHHHHHhhcCcccccCCc-CCCCC-----EEEeccCCcE-EEEecCcEEEEEEEccc Q lcl|Aclame:pro 234 AQAKLYD-KADKPSE-----QIAAQKLDKTIAGRPAYVPPF-LPDNA-----MVVTIPENLQ-VLTQHGTAQRKAKHESD 300 (341) Q Consensus 234 ~~~~l~n-~~~~ptE-----~~a~~~i~k~igGlpa~~vPf-fP~~~-----ilVT~l~NLs-IY~Q~gs~RR~~~d~~~ 300 (341) .+..+. ....|-= .........++-|+|++.++- +|+.. +++-.|++.- |+.+.| .+-...++ T Consensus 276 -~L~~lkd~~G~~i~~~~~~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~-~~i~~~~~-- 351 (389) T protein:vir:10 276 -TLDTLKDKNGRYLLHDASDSITDGTAKGTILGVPVYVVGDTLLGSLAGDQKAFVGDLKRGVLFTDRQQ-VTLAWEDS-- 351 (389) T ss_pred -HHHHhhccCCCeeeecCcccccccccccccccceeEEecccccCCCCCceEEEEeeccccEEEEeecc-eEEEeecc-- Confidence 344332 2222210 000011224799999987654 34332 8888999854 444444 33222222 Q ss_pred ccceecccc--------ceeeccchheeeeccccccCCcchh Q lcl|Aclame:pro 301 RKRSKTHTG--------AWKVTQWVCWKRSPLTTQKKSTSAL 334 (341) Q Consensus 301 r~rve~y~s--------~YvVEdyg~~~~~~~~~~~~~~~a~ 334 (341) ..|.. +..|=+-.+|.-..++..+.++|+- T Consensus 352 ----~~~~~~~~~~~r~d~~~~~~~a~~~~~~~~~~~~~~~~ 389 (389) T protein:vir:10 352 ----KIYGKYLGAAFRFGVQKADSKAGYFVTNTDVPGSALGK 389 (389) T ss_pred ----ccccceEEEEEEeccEEecccceEEEEeeccCCCCCCC Confidence 22222 3333334456666777776666666 No 58 >protein:vir:95763 Length: 297 # NCBI annotation: head protein # Family: family:all:507 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950590;genbank:gi:119953785;genbank:GeneID:5076833 Probab=97.86 E-value=3.7e-06 Score=50.35 Aligned_cols=279 Identities=10% Similarity=-0.023 Sum_probs=155.9 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) |+ -+. |++.-. ....+..-.|-+++.+.+.+.+.+.|.+++..+++++.-..+..+-....++.++ T Consensus 1 m~----~~~---~~~~~~-------~~t~~~~~lvP~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 66 (297) T protein:vir:95 1 MT----VQT---FNPENV-------LVSQKKDGTLHKEFTDIIMKEVAQNSLVMQLGQYQEMEGEQEKTVYVQTDGISAY 66 (297) T ss_pred CC----ccc---cccccc-------cccCCCcceechhHHHHHHHHHHhhchhhhhcceeecCCCccEEEEEEcCCceeE Confidence 33 222 222211 1122223358888889999999999999999999987654444554444444444 Q ss_pred CCCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCCh Q lcl|Aclame:pro 81 RKAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDP 158 (341) Q Consensus 81 rt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~ 158 (341) -...+ .....+..+...+.+++.---+.|+.+.|+.-. ++|+..+.+.+.+.++...-.-.+||+-... T Consensus 67 ~v~Eg~~~~~~~~~f~~v~l~~~k~~~~~~is~ell~ds~-----~~l~~~i~~~la~ai~~~~d~a~l~G~g~~~---- 137 (297) T protein:vir:95 67 WVNETEKIKTDKPEVVPVTLKAHKLGIILVTSREALNYTW-----KKFFEDMKPQIVEAFYKKIDEAGLLGHDTPF---- 137 (297) T ss_pred EeecCccccccccceeEEEEeeEEEEEeehhhHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHHHHhcccCCcc---- Confidence 43322 112234566677777776666777777666433 5799999999999999888888889953211 Q ss_pred hhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHH Q lcl|Aclame:pro 159 SANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKL 238 (341) Q Consensus 159 ~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l 238 (341) | .|=+. .........+++-+|.+|-.+ +..+.+. +.+ .-+++|.++.... ...| T Consensus 138 ---~------~gi~~---------~~~~~~~~~~~~~t~~~i~~~----~~~l~~~-~~~--~~~~v~~~~~~~~-L~~l 191 (297) T protein:vir:95 138 ---A------NSVAK---------AAKDANKVIGGPINYDNILKL----QDALYDA-DVE--PNAFVSKIQNRSA-LREA 191 (297) T ss_pred ---c------ccccc---------cccccceecccccCHHHHHHH----HHHhhhc-cCC--cCEEEEcHHHHHH-HHHh Confidence 1 11111 001111122233456665544 4434333 332 2378999997652 2234 Q ss_pred HhccChhHHHHHHHHHHHhhcCcccccCCc--CCCCCEEEeccCCcEEEEecCcEEEEEEEcccc--------cceeccc Q lcl|Aclame:pro 239 YDKADKPSEQIAAQKLDKTIAGRPAYVPPF--LPDNAMVVTIPENLQVLTQHGTAQRKAKHESDR--------KRSKTHT 308 (341) Q Consensus 239 ~n~~~~ptE~~a~~~i~k~igGlpa~~vPf--fP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r--------~rve~y~ 308 (341) -.....|- .+.-..++-|+|++..|. .+++.+++-.++++-+.. .+..+-.+.++... ..+-.|+ T Consensus 192 ~d~~G~~i----~~~~~~~l~G~Pv~~~~~~~~~~~~~~~gd~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 266 (297) T protein:vir:95 192 RDGNKVSI----YDKAANTIDGITTVDLKSARFEKGDLLAGDFDNLIYGV-PYNITYKISEEGQISTITNADGTPINLFE 266 (297) T ss_pred hccCCcee----ecCCCCcccceeeEeecCCCCCCceEEEEecccEEEEE-ecCeEEEEeeccccccccccCccchhhhh Confidence 33222220 000124688999986554 688899999999976544 44444444333221 2222232 Q ss_pred c---ceeeccc-h--heeeeccccccCCcch Q lcl|Aclame:pro 309 G---AWKVTQW-V--CWKRSPLTTQKKSTSA 333 (341) Q Consensus 309 s---~YvVEdy-g--~~~~~~~~~~~~~~~a 333 (341) . ++.+|-+ | -.....|...+.+||- T Consensus 267 ~~~~~~r~~~~~d~~v~~~~a~~~l~~at~~ 297 (297) T protein:vir:95 267 QEMIAIRATMDIAVMITKTDAFAKLTPAERV 297 (297) T ss_pred cCcEEEEEEEEeccEeecccceEEEeecCCC Confidence 2 5555443 3 3344456677777777 No 59 >protein:vir:4953 Length: 397 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049929;genbank:gi:9632900;genbank:GeneID:1262076 Probab=97.85 E-value=1.1e-05 Score=47.81 Aligned_cols=281 Identities=9% Similarity=0.095 Sum_probs=150.7 Q ss_pred CCccccHHHHHHHHHHHHHH-----HHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeec--c Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQL-----AKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDV--G 73 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~-----A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~l--g 73 (341) -.+.+...-+..|..|+..- +.........-.+.|-..+...+.+.+.+.+.+++.+++++++...|..... . T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~gg~~vP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (397) T protein:vir:49 82 SEEEVKAGFVKDFKNLVRGRYQNLLDSKTDASGSDAGLTIPQDIQTAIHTLVSQYDSLQEYVNVENVTTLTGSRVYEKWT 161 (397) T ss_pred chhHHHHHHHHHHHHHHhcchhHHHHHhhccccccCcccccHhHHHHHHHHHHhhhhHHhhhceeecccCccceEEEeec Confidence 11223334444555554321 1112222233456676677889999999999999999999999888876543 2 Q ss_pred cccccCCCCCCCcc-c--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccc Q lcl|Aclame:pro 74 VSGLYTGRKAGGRF-T--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGV 150 (341) Q Consensus 74 v~g~iagrt~t~r~-~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~ 150 (341) ..++.++-...+.. + ..+.++...+.+++.---+.|+.+.|+.- .++|+..+.+.+.++++.-.-.--++|+ T Consensus 162 ~~~~~a~~v~E~~~~~~~~~~~~~~i~~~~~k~~~~~~iS~ell~ds-----~~~l~~~i~~~l~~~~~~~~d~ai~~G~ 236 (397) T protein:vir:49 162 DITGLANIDDEAGKIADVDDPKLSLIKYTIKRYAGISTVTNSLLADS-----AENILAWLSGWIAKKVVVTRNKAILEAI 236 (397) T ss_pred cCCcceeeecCccccccccccceeeEEeeeeeEEeeehhHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 22233343332221 2 22355666666666555567776776542 2689999999999999887766667774 Q ss_pred cccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHH Q lcl|Aclame:pro 151 SAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGL 230 (341) Q Consensus 151 s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dL 230 (341) ..... .+.. .+.|.+ .+++.. |++.++. .-+++|.+.. T Consensus 237 g~~~~-----------------------------------~~~~---~~~d~i-~~~~~~-l~~~~~~--~a~~vmn~~~ 274 (397) T protein:vir:49 237 AALPT-----------------------------------KPTL---TKWDDI-IDLEAK-VDPAIKQ--TSFFLTNTSG 274 (397) T ss_pred ccccc-----------------------------------cccc---ccHHHH-HHHHHh-hhhhhcC--CCEEEEcHHH Confidence 32110 0111 234443 345544 4666664 3588999987 Q ss_pred HHHHHhHHHh-ccChhHHHHHHHHH----HHhhcCcccccCC--cCCCCC-----EEEeccCCcE-EEEecCcEEEEEEE Q lcl|Aclame:pro 231 IGAAQAKLYD-KADKPSEQIAAQKL----DKTIAGRPAYVPP--FLPDNA-----MVVTIPENLQ-VLTQHGTAQRKAKH 297 (341) Q Consensus 231 la~~~~~l~n-~~~~ptE~~a~~~i----~k~igGlpa~~vP--ffP~~~-----ilVT~l~NLs-IY~Q~gs~RR~~~d 297 (341) ++ .++.+. ....| +....+ ..++-|+|++.++ .+|.++ +++=.|++.- |+.+.| .+-..-+ T Consensus 275 ~~--~l~~lkd~~G~~---l~~~~~~~~~~~~l~G~PV~~~~~~~~~~~~~~~~~i~~gd~~~~~~~~~~~~-~~i~~~~ 348 (397) T protein:vir:49 275 FT--ALKKVKNALGDY---LMERDVKSPTGYSIDGFAVKEVADRWLANGTGGAMPLYFGDLKQAVTLFDRQH-MSLLSTN 348 (397) T ss_pred HH--HHHHhhcCCCce---eeccCcCCCCCceecceeeEEecccccccccCCceeEEEeeccceEEEEeecc-eEEEEec Confidence 65 444442 22222 111011 2479999998765 366544 6776777643 333433 3322211 Q ss_pred cc----cccceecc---ccceeeccchheeeeccccccCC-----cchh Q lcl|Aclame:pro 298 ES----DRKRSKTH---TGAWKVTQWVCWKRSPLTTQKKS-----TSAL 334 (341) Q Consensus 298 ~~----~r~rve~y---~s~YvVEdyg~~~~~~~~~~~~~-----~~a~ 334 (341) .. .++.+.-+ .-++.|-+..+|....++.++.+ +-|+ T Consensus 349 ~~~~~~~~~~~~~r~~~r~d~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (397) T protein:vir:49 349 IGGGAFETDTTKVRVIDRFDVVATDTEAFVPASFKAIADQKGNLGSTAV 397 (397) T ss_pred cccchhhcCceeEEEEeeeCcEEecccceEEEEeecccCCCCCcccccC Confidence 11 12222111 01444444445555555554444 3333 No 60 >protein:vir:3991 Length: 404 # NCBI annotation: major structural protein # Family: family:all:21 # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116499;genbank:gi:14251132;genbank:GeneID:921252 Probab=97.85 E-value=9.3e-06 Score=48.16 Aligned_cols=290 Identities=12% Similarity=0.084 Sum_probs=159.6 Q ss_pred CC---ccccHHHHHHHHHHHHHHHHhh-Cc--------hhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccc Q lcl|Aclame:pro 1 MS---QILTQSAREYMDNFAQQLAKSY-GV--------SNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQ 68 (341) Q Consensus 1 m~---~~M~~~tr~~~~~y~~~~A~~n-gv--------~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge 68 (341) +. +..+...+..|.+|+....... .. .+.+-.+.|-+.+.+.+.+.+.+.+.+++.++++++....|. T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~t~~~gg~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~ 161 (404) T protein:vir:39 82 LNKSEYELKDKFVKEFVNMVRNPMAFLNTVSSKTETSGSDSAAGLTIPQDIRTMINTLVRQYDSLQQYVRVESVSTSNGS 161 (404) T ss_pred cccchhhhHHHHHHHHHHHHhcchhhhhhhhhhhhhcccccCCceeccHHHHHHHHHHHHhhhhHHhhcceeeccCCcce Confidence 11 1123344455555553322111 11 112234667778889999999999999999999999888887 Q ss_pred eeeccc--ccccCCCCCCCcc-c--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 69 VVDVGV--SGLYTGRKAGGRF-T--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIM 143 (341) Q Consensus 69 ~i~lgv--~g~iagrt~t~r~-~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i 143 (341) ....-. .++.+.-...+.. + ..+.++...+.+++.---+.|+.+.|+.-. ++|+..+.+.+.+.++.=.- T Consensus 162 ~~~~~~~~~~~~a~~v~Eg~~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~~~~~~~d 236 (404) T protein:vir:39 162 RVYEKWTDVTPLTVMDAEDGKIPDLDNPRLTIIKYLIKRYAGIITATNTLLKDTA-----ENILAWLSSWIAKKVVVTRN 236 (404) T ss_pred EEEEeecCCccceeeecCccccccccccceeeEEeeeeeEEeeehhHHHHHhhch-----HHHHHHHHHHHHHHHHHHHH Confidence 654321 2223332322211 1 234566666666665555667777666432 67888899988888877665 Q ss_pred HHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeE Q lcl|Aclame:pro 144 RIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLT 223 (341) Q Consensus 144 ~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLV 223 (341) .--++|+.... ..+..-+ .|.+ .+++...+++.++. .-+ T Consensus 237 ~~il~g~g~~~-----------------------------------~~~~~~~---~~~i-~~~~~~~~~~~~~~--~a~ 275 (404) T protein:vir:39 237 QAIIAAMGTVP-----------------------------------KKPTIAK---FDDV-ITMINTSVDPAIIA--TSS 275 (404) T ss_pred HHHHhcccccc-----------------------------------ccccccc---HHHH-HHHHHHhhhhhhcc--CCE Confidence 55566643110 0112223 3433 34445566777765 458 Q ss_pred EEeChHHHHHHHhHHHh-ccChhHHH-HHHHHHHHhhcCcccccCC--cCCCCC-----EEEeccCCcEEEEecCcEEEE Q lcl|Aclame:pro 224 VFVGSGLIGAAQAKLYD-KADKPSEQ-IAAQKLDKTIAGRPAYVPP--FLPDNA-----MVVTIPENLQVLTQHGTAQRK 294 (341) Q Consensus 224 vivG~dLla~~~~~l~n-~~~~ptE~-~a~~~i~k~igGlpa~~vP--ffP~~~-----ilVT~l~NLsIY~Q~gs~RR~ 294 (341) ++|.+..+. .+..+. ....|-=. .....-..++-|+|++... .+|..+ +++-.|++.-+.+.++..+=. T Consensus 276 ~v~n~~~~~--~L~~lkd~~G~~l~~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~i~ 353 (404) T protein:vir:39 276 LLTNQSGLN--KLALVKTAEGKYLLEPDPTKPNSYLIKGKKVIVVADRWLPNSGSTVYPLYYGDMSQAITLFDRENMSLL 353 (404) T ss_pred EEEcHHHHH--HHHHhhccCCceeeccCcCCCCcceecceeEEEecccccCccCCCccEEEEEeccccEEEEeecceEEE Confidence 999988654 344332 22222100 0000112478899998764 466543 788888886666655555544 Q ss_pred EEEccc----ccceecc---ccceeeccchheeeeccccccCCcchhcccc Q lcl|Aclame:pro 295 AKHESD----RKRSKTH---TGAWKVTQWVCWKRSPLTTQKKSTSALNHRS 338 (341) Q Consensus 295 ~~d~~~----r~rve~y---~s~YvVEdyg~~~~~~~~~~~~~~~a~~~~~ 338 (341) +.+... ++.+.-. .-++.|-+-.+|..+.++.++.+.++.-.-. T Consensus 354 ~~~~~~~~~~~~~~~~r~~~r~d~~~~~~~a~~~~~~~~~a~~~~~~~~~~ 404 (404) T protein:vir:39 354 PTNIGAGAFETDTTKIRVIDRFDVKTTDSEALVAGSFTAIADQVGNFTAGK 404 (404) T ss_pred EeccchhhhhhceeeEEEEeeeccEEecccceEEEEeeccccCCCCCCCCC Confidence 433322 2222111 1156666666777777777766544332221 No 61 >protein:vir:96392 Length: 324 # NCBI annotation: ORF011 # Family: family:all:507 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239648;genbank:gi:66395381;genbank:GeneID:5132868 Probab=97.82 E-value=1e-05 Score=47.94 Aligned_cols=300 Identities=9% Similarity=-0.021 Sum_probs=155.5 Q ss_pred CCcccc--HHHHHHHHHHHHHHHHhhC--ch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc Q lcl|Aclame:pro 1 MSQILT--QSAREYMDNFAQQLAKSYG--VS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS 75 (341) Q Consensus 1 m~~~M~--~~tr~~~~~y~~~~A~~ng--v~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~ 75 (341) |.+ |+ +..++.|..+....+..+. +- .....+.|-+++...+++.+.+.|.++++++++++.-.. -++-.-.+ T Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~iP~~~~~~ii~~~~~~s~l~~l~~~~~~~~~~-~~~p~~~~ 78 (324) T protein:vir:96 1 MEQ-TQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLMNEFTTPILQEVMENSKIMQLGKYEPMEGTE-KKFTFWAD 78 (324) T ss_pred CCc-chhhhHHHHHHHHHhhhhhhhccccccccCcCccccchhHHHHHHHHHHhhchhhhhcceeeccCCc-eEEEEEec Confidence 653 33 5566666666665554442 21 223446677888899999999999999999999876322 12222222 Q ss_pred cccCCCCCC-C-ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcccccc Q lcl|Aclame:pro 76 GLYTGRKAG-G-RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAE 153 (341) Q Consensus 76 g~iagrt~t-~-r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A 153 (341) ++-++=... + .....+.++...+..++.---+.|+.+.|+.-. ++|...+.+.+.+.++.-.-.-.|+|+-. T Consensus 79 ~~~a~~v~Eg~~~~~~~~~~~~v~~~~~k~~~~~~is~ell~ds~-----~~l~~~i~~~la~ai~~~~d~a~l~G~g~- 152 (324) T protein:vir:96 79 KPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTY-----SQFFEEMKPMIAEAFYKKFDEAGILNQGN- 152 (324) T ss_pred CcceeEecCCccccccccceeEEEEeeEEEEEeehhhHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHHhccCCC- Confidence 333222211 1 112234566677777776666777766666332 68999999999999998887888888431 Q ss_pred ccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHH Q lcl|Aclame:pro 154 ADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGA 233 (341) Q Consensus 154 ~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~ 233 (341) ... |. |=+ ...........+...|.+|-.+... +++.+++.. +++|.+..... T Consensus 153 -~~~----~~------gi~---------~~~~~~~~~~~~~~t~~~i~~~~~~-----l~~~~~~~~--~~vmn~~~~~~ 205 (324) T protein:vir:96 153 -NPF----GK------SIA---------QSIEKTNKVIKGDFTQDNIIDLEAL-----LEDDELEAN--AFISKTQNRSL 205 (324) T ss_pred -CCc----Cc------ccc---------ccccccceeccccccHHHHHHHHHh-----hhhccCCCC--EEEEcHHHHHH Confidence 111 11 100 0011111122233446555544332 344444432 68888876552 Q ss_pred HHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcC--CCCCEEEeccCCcEEEEecCcEEEEEEEcc--------cccc Q lcl|Aclame:pro 234 AQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFL--PDNAMVVTIPENLQVLTQHGTAQRKAKHES--------DRKR 303 (341) Q Consensus 234 ~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPff--P~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~--------~r~r 303 (341) -..+-.....|- + ......++-|+|++..|.. +++.+++-.++++- +-..+..+-.+.++. +-.. T Consensus 206 -L~~l~d~~G~~~--~-~~~~~~~l~G~PV~~~~~~~~~~~~~~~gd~~~~~-~g~~~~~~i~~~~~~~~~~~~~~~~~~ 280 (324) T protein:vir:96 206 -LRKIVDPETKER--I-YDRNSDSLDGLPVVNLKSSNLKRGELITGDFDKLI-YGIPQLIEYKIDETAQLSTVKNEDGTP 280 (324) T ss_pred -HHHhhccCCCee--e-cCCCCCcccceeeEeeCCCCCCcceEEEEecceEE-EEEecCcEEEEeecccccccccccccc Confidence 122222222221 0 0111347899999988874 45568888999864 433444444443332 2222 Q ss_pred eeccc--c-ceeeccc-h--heeeeccccccCCcchhc-ccccC Q lcl|Aclame:pro 304 SKTHT--G-AWKVTQW-V--CWKRSPLTTQKKSTSALN-HRSER 340 (341) Q Consensus 304 ve~y~--s-~YvVEdy-g--~~~~~~~~~~~~~~~a~~-~~~~~ 340 (341) +..|+ . +|.+|-+ | ......|..++.+.+... --+|- T Consensus 281 ~~~f~~d~~~~r~~~r~d~~v~~~~A~~~l~~a~~~~~~~~~~~ 324 (324) T protein:vir:96 281 VNLFEQDMVALRATMHVALHIADDKAFAKLVPADKRTDSVPGEV 324 (324) T ss_pred hhhhhcCcEEEEEEEEEccEEecccceEEEecccccCCCCCCCC Confidence 22232 2 5555443 2 222223333333222111 11122 No 62 >protein:vir:78830 Length: 324 # NCBI annotation: major head protein # Family: family:all:507 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285361;genbank:gi:148717889;genbank:GeneID:5246961 Probab=97.82 E-value=1e-05 Score=47.94 Aligned_cols=300 Identities=9% Similarity=-0.021 Sum_probs=155.5 Q ss_pred CCcccc--HHHHHHHHHHHHHHHHhhC--ch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc Q lcl|Aclame:pro 1 MSQILT--QSAREYMDNFAQQLAKSYG--VS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS 75 (341) Q Consensus 1 m~~~M~--~~tr~~~~~y~~~~A~~ng--v~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~ 75 (341) |.+ |+ +..++.|..+....+..+. +- .....+.|-+++...+++.+.+.|.++++++++++.-.. -++-.-.+ T Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~iP~~~~~~ii~~~~~~s~l~~l~~~~~~~~~~-~~~p~~~~ 78 (324) T protein:vir:78 1 MEQ-TQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLMNEFTTPILQEVMENSKIMQLGKYEPMEGTE-KKFTFWAD 78 (324) T ss_pred CCc-chhhhHHHHHHHHHhhhhhhhccccccccCcCccccchhHHHHHHHHHHhhchhhhhcceeeccCCc-eEEEEEec Confidence 653 33 5566666666665554442 21 223446677888899999999999999999999876322 12222222 Q ss_pred cccCCCCCC-C-ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcccccc Q lcl|Aclame:pro 76 GLYTGRKAG-G-RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAE 153 (341) Q Consensus 76 g~iagrt~t-~-r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A 153 (341) ++-++=... + .....+.++...+..++.---+.|+.+.|+.-. ++|...+.+.+.+.++.-.-.-.|+|+-. T Consensus 79 ~~~a~~v~Eg~~~~~~~~~~~~v~~~~~k~~~~~~is~ell~ds~-----~~l~~~i~~~la~ai~~~~d~a~l~G~g~- 152 (324) T protein:vir:78 79 KPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTY-----SQFFEEMKPMIAEAFYKKFDEAGILNQGN- 152 (324) T ss_pred CcceeEecCCccccccccceeEEEEeeEEEEEeehhhHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHHhccCCC- Confidence 333222211 1 112234566677777776666777766666332 68999999999999998887888888431 Q ss_pred ccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHH Q lcl|Aclame:pro 154 ADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGA 233 (341) Q Consensus 154 ~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~ 233 (341) ... |. |=+ ...........+...|.+|-.+... +++.+++.. +++|.+..... T Consensus 153 -~~~----~~------gi~---------~~~~~~~~~~~~~~t~~~i~~~~~~-----l~~~~~~~~--~~vmn~~~~~~ 205 (324) T protein:vir:78 153 -NPF----GK------SIA---------QSIEKTNKVIKGDFTQDNIIDLEAL-----LEDDELEAN--AFISKTQNRSL 205 (324) T ss_pred -CCc----Cc------ccc---------ccccccceeccccccHHHHHHHHHh-----hhhccCCCC--EEEEcHHHHHH Confidence 111 11 100 0011111122233446555544332 344444432 68888876552 Q ss_pred HHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcC--CCCCEEEeccCCcEEEEecCcEEEEEEEcc--------cccc Q lcl|Aclame:pro 234 AQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFL--PDNAMVVTIPENLQVLTQHGTAQRKAKHES--------DRKR 303 (341) Q Consensus 234 ~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPff--P~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~--------~r~r 303 (341) -..+-.....|- + ......++-|+|++..|.. +++.+++-.++++- +-..+..+-.+.++. +-.. T Consensus 206 -L~~l~d~~G~~~--~-~~~~~~~l~G~PV~~~~~~~~~~~~~~~gd~~~~~-~g~~~~~~i~~~~~~~~~~~~~~~~~~ 280 (324) T protein:vir:78 206 -LRKIVDPETKER--I-YDRNSDSLDGLPVVNLKSSNLKRGELITGDFDKLI-YGIPQLIEYKIDETAQLSTVKNEDGTP 280 (324) T ss_pred -HHHhhccCCCee--e-cCCCCCcccceeeEeeCCCCCCcceEEEEecceEE-EEEecCcEEEEeecccccccccccccc Confidence 122222222221 0 0111347899999988874 45568888999864 433444444443332 2222 Q ss_pred eeccc--c-ceeeccc-h--heeeeccccccCCcchhc-ccccC Q lcl|Aclame:pro 304 SKTHT--G-AWKVTQW-V--CWKRSPLTTQKKSTSALN-HRSER 340 (341) Q Consensus 304 ve~y~--s-~YvVEdy-g--~~~~~~~~~~~~~~~a~~-~~~~~ 340 (341) +..|+ . +|.+|-+ | ......|..++.+.+... --+|- T Consensus 281 ~~~f~~d~~~~r~~~r~d~~v~~~~A~~~l~~a~~~~~~~~~~~ 324 (324) T protein:vir:78 281 VNLFEQDMVALRATMHVALHIADDKAFAKLVPADKRTDSVPGEV 324 (324) T ss_pred hhhhhcCcEEEEEEEEEccEEecccceEEEecccccCCCCCCCC Confidence 22232 2 5555443 2 222223333333222111 11122 No 63 >protein:vir:81227 Length: 413 # NCBI annotation: gp6, major capsid protein # Family: family:all:585 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456736;genbank:gi:157168379;hssp:P49861;interpro:IPR006444;uniprot:Q9MBJ9;genbank:GeneID:5580350 Probab=97.75 E-value=2.1e-05 Score=46.18 Aligned_cols=293 Identities=12% Similarity=0.009 Sum_probs=141.9 Q ss_pred CCccccHH-------------HHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhcc Q lcl|Aclame:pro 1 MSQILTQS-------------AREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEG 67 (341) Q Consensus 1 m~~~M~~~-------------tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~G 67 (341) +.-.+... .+.-+.+.. ..+. .+.......+.|-+...+.++..+.+.+.+++.+++++++-..+ T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~vp~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~ 162 (413) T protein:vir:81 85 AGDQIKQQAGGAQLNYSVGEYVAPRVKAAS-DPAS-TATLTDEFQGGYGTTWNRNIIYRRREKLVVADLMDNLTMTNTTI 162 (413) T ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHhhh-hhhh-hcccccccccccchhhHHHHHHHHhhhhhHHhhcceeeccCCce Confidence 00000000 000000000 0001 11112234556778888999999999999999999998876544 Q ss_pred ceeec-c--cccccCCCCCC-Ccccc-c-cCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 68 QVVDV-G--VSGLYTGRKAG-GRFTK-Q-VGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALD 141 (341) Q Consensus 68 e~i~l-g--v~g~iagrt~t-~r~~r-~-~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD 141 (341) ...-. + +...-++-... +..+. . ..++...+..++.=-.+.|+.++|+.. +.+...++..++++++.= T Consensus 163 ~~~~~~~~~~~~~~a~~v~Eg~~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~ds------~~l~~~i~~~la~~~~~~ 236 (413) T protein:vir:81 163 KYLMEKANRVVEGGFKTVAEGGKKPYMRFADFDIVTESLSKIAGLTKITDEMIEDY------DFLVSYINARLLEELAIE 236 (413) T ss_pred eEEEeccccccccccceecCcccccccCcccceeeEeeeeeEEEeehhhHHHHHHH------HHHHHHHHHHHHHHHHHH Confidence 32211 1 11111121111 11121 2 234555566655555577888877643 458888899888888776 Q ss_pred HHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcc-cchhhccCC Q lcl|Aclame:pro 142 IMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQ-IHPMFRNDP 220 (341) Q Consensus 142 ~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~l-i~~~~r~~~ 220 (341) .-.--+||+- + .+| -+|++... ...++..+++.++ .| .+.+++..+ .+.-++. T Consensus 237 ~d~~~l~G~G----~---~~~-----~~Gi~~~~---------~~~~~~~~~~~~~--~~-~i~~~~~~~~~~~~~~~-- 290 (413) T protein:vir:81 237 EERQLLLGDG----T---GNN-----LTGLLKRD---------GIQTLAVSNKDEL--AD-SIYKAMTNISLATPFQA-- 290 (413) T ss_pred HHHHHhccCC----C---CCc-----cccccccc---------ccccccccccchh--HH-HHHHHHHHhhhhccCCC-- Confidence 6666678832 1 112 12554310 0111222233332 22 223333222 2333332 Q ss_pred CeEEEeChHHHHHHHhHHHhccChhHHH------HH--HHHHHHhhcCcccccCCcCCCCCEEEeccCC-cEEEEecCcE Q lcl|Aclame:pro 221 RLTVFVGSGLIGAAQAKLYDKADKPSEQ------IA--AQKLDKTIAGRPAYVPPFLPDNAMVVTIPEN-LQVLTQHGTA 291 (341) Q Consensus 221 dLVvivG~dLla~~~~~l~n~~~~ptE~------~a--~~~i~k~igGlpa~~vPffP~~~ilVT~l~N-LsIY~Q~gs~ 291 (341) . .++|.+..+.. ...|-.....|-=. .+ .-....++-|+|++..+++|++.+++-.+++ +-++.+.| . T Consensus 291 ~-~~vmn~~~~~~-l~~lkd~~G~~l~~~~~~~~~~~~~~~~~~~l~G~pv~~s~~~~~~~~~~gd~~~~~~~~~~~~-~ 367 (413) T protein:vir:81 291 D-ALVINPLDYQE-LRLAKDANGQYYGGGVFQGQYGSGGIMLDPAPWGLRTVQSQVVPVGKPVVGAFRSAASVLRKGG-V 367 (413) T ss_pred c-EEEEcHHHHHH-HHHhhccCCceeccccccccccccccccCceecceeeEEcCCCCcccEEEEecccEEEEEEecc-e Confidence 2 47788765552 22222222222100 00 0112357889999999999999999999997 44444444 3 Q ss_pred EEEEEEcc----cccceecc---ccceeeccchheeeeccccccCCcc Q lcl|Aclame:pro 292 QRKAKHES----DRKRSKTH---TGAWKVTQWVCWKRSPLTTQKKSTS 332 (341) Q Consensus 292 RR~~~d~~----~r~rve~y---~s~YvVEdyg~~~~~~~~~~~~~~~ 332 (341) .-.+.+.. .++.+.-+ .-++.|-+-.+|....++... +| T Consensus 368 ~v~~~~~~~~~~~~~~~~~r~~~r~d~~~~~~~a~~~l~~~~~~--~p 413 (413) T protein:vir:81 368 RIDSTNTNVDDFENNLITVRAEERVGLMVTFPEAIVQLDVAEVV--TP 413 (413) T ss_pred EEEEeccccchhhcCcEEEEEEEeeccEEecccceEEEEecCCC--CC Confidence 32222211 23444322 114555555556655554443 33 No 64 >protein:vir:103955 Length: 324 # NCBI annotation: head protein # Family: family:all:507 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873992;genbank:gi:118430767;genbank:GeneID:4525449 Probab=97.75 E-value=1.5e-05 Score=46.95 Aligned_cols=295 Identities=9% Similarity=-0.030 Sum_probs=152.0 Q ss_pred CCcccc--HHHHHHHHHHHHHHHHhhC--ch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc Q lcl|Aclame:pro 1 MSQILT--QSAREYMDNFAQQLAKSYG--VS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS 75 (341) Q Consensus 1 m~~~M~--~~tr~~~~~y~~~~A~~ng--v~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~ 75 (341) |.. |+ +...++|..++.+....+. +. .......|-+.+...+++.+.+.|.+++..+++++.-... ++-.-.+ T Consensus 1 ~~~-~~~~~~~~~~f~~~~~~~~~~~a~~~~~~~~~~~liP~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~-~~p~~~~ 78 (324) T protein:vir:10 1 MEQ-TQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLLNDFTTPILQEVMENSKIMQLGKYEPMEGTEK-KFTFWAD 78 (324) T ss_pred CCC-chHHHHHHHHHHHHhhccceecccceeccCCCcceechhHHHHHHHHHHhhchhhhhcceeeccCCce-EEEEEeC Confidence 553 32 2234455555544433322 11 1123456778888999999999999999999998774322 2222222 Q ss_pred cccCCCCCC-Cc-cccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcccccc Q lcl|Aclame:pro 76 GLYTGRKAG-GR-FTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAE 153 (341) Q Consensus 76 g~iagrt~t-~r-~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A 153 (341) ++.+.-... +. ....+.++...+.+++.---..|+.+.|+... ++|+..+.+.+.++++.-.-.-.++|.-. T Consensus 79 ~~~a~~v~Eg~~~~~~~~~~~~v~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~ai~~~~d~a~l~G~g~- 152 (324) T protein:vir:10 79 KPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTY-----SQFFEEMKPMIAEAFYKKFDEAGILNQGN- 152 (324) T ss_pred CcceeEeccCccccccccceeEEEEeeEEEEEeehhhHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHhhhcCCC- Confidence 333332221 11 12234567777788877777888888776543 58999999999998887766667777321 Q ss_pred ccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHH Q lcl|Aclame:pro 154 ADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGA 233 (341) Q Consensus 154 ~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~ 233 (341) ...|. .++. ....+.....+.-.|..|.. ++..+ ++.++... +++|.+..+.. T Consensus 153 -~~~~~--~i~~-----------------~~~~~~~~~~~~~t~~~i~~----~~~~l-~~~~~~~~--~~v~n~~~~~~ 205 (324) T protein:vir:10 153 -NPFGK--SIAQ-----------------SIEKTNKVIKGDFTQDNIID----LEALL-EDDELEAN--AFISKTQNRSL 205 (324) T ss_pred -CccCc--cccc-----------------cccccceeccccCCHHHHHH----HHHhh-hhccCCCC--EEEEcHHHHHH Confidence 11111 0111 01111111122334555444 34433 44444432 67888887652 Q ss_pred HHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCC--CEEEeccCCcEEEEecCcEEEEEEEccc--------ccc Q lcl|Aclame:pro 234 AQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDN--AMVVTIPENLQVLTQHGTAQRKAKHESD--------RKR 303 (341) Q Consensus 234 ~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~--~ilVT~l~NLsIY~Q~gs~RR~~~d~~~--------r~r 303 (341) -..+-.....|. . ......++-|+|++..|..+.+ .+++..++++-|-.. +..+-.+.++.. -.. T Consensus 206 -L~~l~d~~g~~~--~-~~~~~~~l~G~PV~~~~~~~~~~~~~~~gd~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 280 (324) T protein:vir:10 206 -LRKIVDPETKER--I-YDRNSDTLDGLPVVNLKSSNLKRGELITGDFDKLIYGIP-QLIEYKIDETAQLSTVKNEDGTP 280 (324) T ss_pred -HHHhhccCCcee--e-cCCCCccccceeEEeecCCCCCcceEEEEecccEEEEEe-cCcEEEEeecccccccccccccc Confidence 222322222221 0 0011347899999998886654 589999999754443 334444433321 111 Q ss_pred eeccc--c-ceeecc--------chheeeecccc-ccCCcchhc Q lcl|Aclame:pro 304 SKTHT--G-AWKVTQ--------WVCWKRSPLTT-QKKSTSALN 335 (341) Q Consensus 304 ve~y~--s-~YvVEd--------yg~~~~~~~~~-~~~~~~a~~ 335 (341) +..|+ . +|.+|- -.+|......+ +..++||-= T Consensus 281 ~~~~~~~~~~~r~~~r~d~~v~~~~A~~~l~~a~~~~~~~~~~~ 324 (324) T protein:vir:10 281 VNLFEQDMVALRATMHVALHIADDKAFAKLVPADKKTDSVPGEV 324 (324) T ss_pred hhhhhcCcEEEEEEEEEccEEecccceEEEEeccCCCCCCCCCC Confidence 11121 1 444433 33333332222 222233322 No 65 >protein:vir:7409 Length: 408 # NCBI annotation: major structural protein # Family: family:all:21 # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839926;genbank:gi:30089896;genbank:GeneID:1260683 Probab=97.75 E-value=1.7e-05 Score=46.77 Aligned_cols=292 Identities=11% Similarity=0.115 Sum_probs=154.5 Q ss_pred CCccccHHHHHHHHHHHHHHHHh----hCc--------hhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKS----YGV--------SNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQ 68 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~----ngv--------~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge 68 (341) ++..-.........+|...+-.. ..+ ....-.+.|-+.+...+.+.+.+.+.+++.+++++++...|. T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~gg~~vP~~~~~~Ii~~~~~~~~l~~~~~~~~~~~~~~~ 161 (408) T protein:vir:74 82 LNKSENELKDKFVKDFVNMVRNPMAFLNTVSSKTETSGSDSAAGLTIPQDIRTMINTLVRQYDSLQQYVRVESVSTSSGS 161 (408) T ss_pred ccchhhhhHHHHHHHHHHHHhcchhhhhhhhhhhhcccccCCCceeechhHhhHHHHHHhhhcchhhhcceeeccCCcce Confidence 22212221112222222211110 111 122235678778888999999999999999999999887776 Q ss_pred eeeccc--ccccCCCCCCCcc-c--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 69 VVDVGV--SGLYTGRKAGGRF-T--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIM 143 (341) Q Consensus 69 ~i~lgv--~g~iagrt~t~r~-~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i 143 (341) ...... .++.+.....+.. + ..+.++...+.+++.---+.|+.+.|+.-. .+|+..+.+.+.+.++.=.- T Consensus 162 ~~~~~~~~~~~~~~~v~E~~~~~~~~~~~~~~i~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~~~~~~~d 236 (408) T protein:vir:74 162 RVYEKWTDVTPLKAMDEEDGKIPDLDNPRLTIIKYLIKRYAGIITATNTLLKDTA-----ENILAWLSSWIAKKVVVTRN 236 (408) T ss_pred EEEEeecCCcccccccccccccccccccceeeEEeeeeeEEeeehhHHHHHhhch-----HHHHHHHHHHHHHHHHHHHH Confidence 443322 2233333332211 1 224566666777766656777777776432 57999999999998887666 Q ss_pred HHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeE Q lcl|Aclame:pro 144 RIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLT 223 (341) Q Consensus 144 ~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLV 223 (341) .--++|+-... | .+..-+ .|.++ +++...+++.|+. .-+ T Consensus 237 ~~il~G~G~~~-------~----------------------------~~~~~~---~~~i~-~~~~~~l~~~~~~--~a~ 275 (408) T protein:vir:74 237 QAIIAAMGTVP-------K----------------------------KPTIAN---FDDVI-TMINTSVDPAIIA--TSS 275 (408) T ss_pred HHHhhcccccc-------c----------------------------cccccc---HHHHH-HHHHHhhhhhhcC--CCE Confidence 66667743110 0 012223 34433 3344456888875 458 Q ss_pred EEeChHHHHHHHhHHHh-ccChhHHH-HHHHHHHHhhcCcccccCC--cCCCCC-----EEEeccCCcEEEEecCcEEEE Q lcl|Aclame:pro 224 VFVGSGLIGAAQAKLYD-KADKPSEQ-IAAQKLDKTIAGRPAYVPP--FLPDNA-----MVVTIPENLQVLTQHGTAQRK 294 (341) Q Consensus 224 vivG~dLla~~~~~l~n-~~~~ptE~-~a~~~i~k~igGlpa~~vP--ffP~~~-----ilVT~l~NLsIY~Q~gs~RR~ 294 (341) ++|.+..+. .+..+- ....|-=. .....-..++-|+|++..+ ++|..+ +++=.++..-.++.++..+-. T Consensus 276 ~v~n~~~~~--~l~~lkd~~G~~l~~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~~~~~i~~gd~~~~~~~~~~~~~~i~ 353 (408) T protein:vir:74 276 LLTNQSGLN--KLALVKTAEGKYLLEPDPTKPNSYLIKGKQVIVVADRWLPNSGSTVYPLYYGDMSQAITLFDRENMSLL 353 (408) T ss_pred EEEcHHHHH--HHHHhhcCCCceEeccCcCCCCCceecceeeEEecCcccccccCCcceEEEEehhccEEEEEecceEEE Confidence 899998755 344332 22222100 0000112479999998876 577543 677777776655655555433 Q ss_pred EEEcccccceecccc--------ceeeccchheeeeccccccCCcchhcccccCC Q lcl|Aclame:pro 295 AKHESDRKRSKTHTG--------AWKVTQWVCWKRSPLTTQKKSTSALNHRSERN 341 (341) Q Consensus 295 ~~d~~~r~rve~y~s--------~YvVEdyg~~~~~~~~~~~~~~~a~~~~~~~~ 341 (341) +-+. ..+.+..+.- ++.|-+..+|..+.++.+..+.+++-..+--- T Consensus 354 ~~~~-~~~~f~~~~~~~r~~~r~d~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 407 (408) T protein:vir:74 354 PTNI-GAGAFETDTTKIRVIDRFDVKATDSEALVAGSFTAIADQVGNFKTTTSTA 407 (408) T ss_pred Eecc-ccchhhcceeeEEEEEeeCcEEecccceEEEEeecccCCCCCCCCCcccc Confidence 3221 1122222211 44444445666666665554444333332222 No 66 >protein:vir:485 Length: 407 # NCBI annotation: putative major capsid protein # Family: family:all:21 # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543092;swissprot:trembl:q8w627;genbank:gi:18249904;uniprot:Q8W627;genbank:GeneID:929693 Probab=97.73 E-value=1.3e-05 Score=47.32 Aligned_cols=306 Identities=12% Similarity=0.075 Sum_probs=148.0 Q ss_pred CCccccHHHHHHHHHHHHHHH--HhhCc--------hhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhcccee Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLA--KSYGV--------SNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVV 70 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A--~~ngv--------~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i 70 (341) -.-....+.+..|.+|+.+-. .+... .+..-.+.|-+.+...+.+.+++.+.+++.++++++.... -++ T Consensus 74 ~~~~~~~e~~~a~~~~l~~g~~~~~~~~e~~a~~~~t~~~gG~~iP~~~~~~I~~~~~~~~~l~~~~~~~~~~~~~-~~~ 152 (407) T protein:vir:48 74 TQNKVASEHKEAFIGFMRKGREDGLRELERKALQVGNDEDGGYAIPEELDRTILTLLKDEVVMRQEATVITLGGSD-YKK 152 (407) T ss_pred cccchhhHHHHHHHHHHhccchhhhhHHHHHhhhcccCCCCcccccHhHHHHHHHHHHhhhhhhhhceeeecCCCc-eEE Confidence 111233455666777764311 00000 0112245566667888999999999999999998886543 233 Q ss_pred ecccccccCCCCCC-Cccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhh Q lcl|Aclame:pro 71 DVGVSGLYTGRKAG-GRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGW 147 (341) Q Consensus 71 ~lgv~g~iagrt~t-~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGf 147 (341) ..-.+++.++-... +..+ ....++...|..++.---+.|+.+.|+. + ..+|+..+.+.+.+.++.=.-.--+ T Consensus 153 ~~~~~~~~a~~v~E~~~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~d-s----~~~l~~~i~~~l~~~i~~~~~~a~l 227 (407) T protein:vir:48 153 LVNLGGTTSGWVGETDARPETATSKLGLIEPFMGEIYGNPQATQKMLDD-A----FFNVEDWINSELALEFAEQEEIAFT 227 (407) T ss_pred EEecCCcceeeecccccccccccccceeEEeeeeeeEeehhhHHHHHhc-c----hHHHHHHHHHHHHHHHHHHHHhhhh Confidence 33334444443322 1112 1124555666666665567788777763 2 2478888888888887765544456 Q ss_pred ccccccccCChhhccchhhhhhhHHHHHHHhhccccccccc---eeecCCchhhhHHHHHHHHHhcccchhhccCCCeEE Q lcl|Aclame:pro 148 NGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDV---YFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTV 224 (341) Q Consensus 148 nG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~---~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVv 224 (341) ||+-. ..|. |=|...-..........+. +..++.+. .+.|.+ .+++.+ +++.|+..+ ++ T Consensus 228 ~G~G~-------~~p~------Gil~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~i-~~l~~~-l~~~~~~~a--~~ 289 (407) T protein:vir:48 228 SGDGS-------KKPK------GFLAYESTDEDDKTRAFGKLQHIASGAASG-VTADAI-IKLIYT-LRKAHRSGA--KF 289 (407) T ss_pred ccCCC-------Cccc------eeeecccccccccccccccccccccccccc-cChHHH-HHHHHh-hchhhhcCC--EE Confidence 77321 1232 2221111000000001111 11122222 334544 466665 477777654 67 Q ss_pred EeChHHHHHHHhHHHh-ccChhH--HHHHHHHHHHhhcCcccccCCcCCCCC-----EEEeccCC-cEEEEecCcEEEEE Q lcl|Aclame:pro 225 FVGSGLIGAAQAKLYD-KADKPS--EQIAAQKLDKTIAGRPAYVPPFLPDNA-----MVVTIPEN-LQVLTQHGTAQRKA 295 (341) Q Consensus 225 ivG~dLla~~~~~l~n-~~~~pt--E~~a~~~i~k~igGlpa~~vPffP~~~-----ilVT~l~N-LsIY~Q~gs~RR~~ 295 (341) +|.+..++ .+..+. ....|- .-.. .--..++-|+|++..+++|+.+ |++=.|+. ..|+-..| .+-.. T Consensus 290 v~n~~~~~--~L~~lkD~~Gr~l~~~~~~-~g~~~~l~G~PV~~~~~~p~~~~~~~~i~~Gd~~~~~~i~~~~~-~~i~~ 365 (407) T protein:vir:48 290 MMNNSSLF--AIRLLKDNDGNYLWRPGIE-LGQPSSLAGYGIVENEQMPDIAADAKAIAFGNFKRGYTIVDRIG-TRILR 365 (407) T ss_pred EEcHHHHH--HHHHhhccCCceeeccCcC-CCCCceecceeeEEecCcCCccCCccEEEEEeccccEEEEEeec-eEEEe Confidence 89888764 344332 222221 0000 0012478999999999999733 67677764 33433333 32211 Q ss_pred EEcccccceecc---ccceeeccchheeeeccccccCCcchh Q lcl|Aclame:pro 296 KHESDRKRSKTH---TGAWKVTQWVCWKRSPLTTQKKSTSAL 334 (341) Q Consensus 296 ~d~~~r~rve~y---~s~YvVEdyg~~~~~~~~~~~~~~~a~ 334 (341) .+.-.++.+.-+ .-+..|-|=.+|....++..+.+.+|- T Consensus 366 d~~~~~~~~~~~~~~r~d~~v~~~~a~~~l~~~aa~~~~~~~ 407 (407) T protein:vir:48 366 DPYTNKPFVGFYTTKRTGGMLVDSQAIKLMKIGAATRQKAAA 407 (407) T ss_pred eccccCCcEEEEEEEEeccEEecccceEEEEeeccCCCCCCC Confidence 111112222111 002333333344444444444333333 No 67 >protein:vir:97148 Length: 324 # NCBI annotation: ORF010 # Family: family:all:507 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239726;genbank:gi:66394880;genbank:GeneID:5130881 Probab=97.70 E-value=2.7e-05 Score=45.61 Aligned_cols=294 Identities=9% Similarity=-0.033 Sum_probs=155.0 Q ss_pred CCcccc--HHHHHHHHHHHHHHHHhhC--ch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc Q lcl|Aclame:pro 1 MSQILT--QSAREYMDNFAQQLAKSYG--VS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS 75 (341) Q Consensus 1 m~~~M~--~~tr~~~~~y~~~~A~~ng--v~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~ 75 (341) |-+ |+ +.....|..+....+.... +. .......|-+.+.+.+++.+.+.+-+++..+++++.-... ++-.-.+ T Consensus 1 ~~~-~~~~~~~~~~f~~~~~~~~~~~a~~~~~~~~~~~~iP~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~-~ip~~~~ 78 (324) T protein:vir:97 1 MEQ-TQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLMNEFTTPILQEVMENSKIMQLGKYEPMEGTEK-KFTFWAD 78 (324) T ss_pred Ccc-chhHHHHHHHHHHhhhhhhhhccccccccCCCcceechhHHHHHHHHHHhhcchhhhcceeeccCCce-EEEEEec Confidence 542 22 3444556666655554332 21 1234556777788999999999999999999998763221 2222112 Q ss_pred cccCCCCCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcccccc Q lcl|Aclame:pro 76 GLYTGRKAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAE 153 (341) Q Consensus 76 g~iagrt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A 153 (341) ++-+.-...+ .......++...+.+++.---+.|+.+.|+.-. ++|+..+.+.+.++++.-.-..-++|+- T Consensus 79 ~~~a~~v~Eg~~~~~~~~~f~~v~~~~~k~~~~~~is~ell~ds~-----~~l~~~i~~~l~~aia~~~d~a~l~G~g-- 151 (324) T protein:vir:97 79 KPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTY-----SQFFEEMKPMIAEAFYKKFDEAGILNQG-- 151 (324) T ss_pred CcceeEeccCccccccccceeEEEEeeEEEEEeehhhHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHhhccCC-- Confidence 2222222111 112234667778888887777777777776543 6899999999999998888888888843 Q ss_pred ccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHH Q lcl|Aclame:pro 154 ADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGA 233 (341) Q Consensus 154 ~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~ 233 (341) +.. .|. |=+. ....+.....+...|.+|-.| +..+ .+.++.. + +++|.+..+.. T Consensus 152 --~~~--~~~------gi~~---------~~~~~~~~~~~~~~~~~i~~~----~~~l-~~~~~~~-~-~~v~n~~~~~~ 205 (324) T protein:vir:97 152 --NNP--FGK------SIAQ---------SIEKTNKVIKGDFTQDNIIDL----EALL-EDDELEA-N-AFISKTQNRSL 205 (324) T ss_pred --CCc--cCc------cccc---------cccccceeccccCCHHHHHHH----HHhh-hhccCCC-C-EEEEcHHHHHH Confidence 111 111 1000 011112222344556655544 3333 3444332 2 67888877652 Q ss_pred HHhHHH-hccChhHHHHHHHHHHHhhcCcccccCCcCC--CCCEEEeccCCcEEEEecCcEEEEEEEccc--------cc Q lcl|Aclame:pro 234 AQAKLY-DKADKPSEQIAAQKLDKTIAGRPAYVPPFLP--DNAMVVTIPENLQVLTQHGTAQRKAKHESD--------RK 302 (341) Q Consensus 234 ~~~~l~-n~~~~ptE~~a~~~i~k~igGlpa~~vPffP--~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~--------r~ 302 (341) +..+ .....| +.......++-|+|++..|..| .+.+++-.++++-|-. ++..+-.+.++.. -. T Consensus 206 --L~~lkd~~g~~---~~~~~~~~tl~G~PV~~~~~~~~~~~~~~~gd~~~~~i~~-~~~~~i~~~~~~~~~~~~~~~~~ 279 (324) T protein:vir:97 206 --LRKIVDPETKE---RIYDRNSDTLDGLPVVNLKSSNLKRGELITGDFDKLIYGI-PQLIEYKIDETAQLSTVKNEDGT 279 (324) T ss_pred --HHHhhcCCCce---eecCCCCccccceeeEeecCCCCCcceEEEEecccEEEEE-ecCcEEEEeeccccccccccccc Confidence 3322 222111 0001113478999999888755 5568889999975433 3334433333322 11 Q ss_pred ceecccc---ceeecc--------chheeeecccc-ccCCcchhc Q lcl|Aclame:pro 303 RSKTHTG---AWKVTQ--------WVCWKRSPLTT-QKKSTSALN 335 (341) Q Consensus 303 rve~y~s---~YvVEd--------yg~~~~~~~~~-~~~~~~a~~ 335 (341) .+.-|+. +|.++- -.+|+....++ ++.++||-- T Consensus 280 ~~~~f~~d~~~~r~~~r~d~~v~~~~a~~~l~~~~~~~~~~~~~~ 324 (324) T protein:vir:97 280 PVNLFEQDMVALRATMHVALHIADDKAFAKLVPADKKTDSVPGEV 324 (324) T ss_pred chhhhhcCcEEEEEEEEeccEEecccceEEEEeccCCCCCCCCCC Confidence 1111211 444443 33333333222 222233322 No 68 >protein:vir:78640 Length: 352 # NCBI annotation: phage capsid # Family: family:all:658 # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429943;genbank:gi:156603997;genbank:GeneID:5525386 Probab=97.63 E-value=3.5e-05 Score=45.00 Aligned_cols=280 Identities=9% Similarity=0.031 Sum_probs=130.7 Q ss_pred CCc---cccHH--HHHHHHHHHHHHH----------------HhhCch-hhcceeecChHHHHHHHHHHHhhHHHhcccc Q lcl|Aclame:pro 1 MSQ---ILTQS--AREYMDNFAQQLA----------------KSYGVS-NVAELFNVSPQLETKLRAAITESAEFLKMIT 58 (341) Q Consensus 1 m~~---~M~~~--tr~~~~~y~~~~A----------------~~ngv~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~In 58 (341) .+. .+... ....|..|..... ...+.. +..-.|.|-.++...+++.+++.+.+.+.++ T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~al~~~~~~~gG~lIP~~~~~~Ii~~l~~~s~l~~~~~ 118 (352) T protein:vir:78 39 KGEAYQSLNDNEKLVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLSKEIVSEPFAKNQLREKAR 118 (352) T ss_pred ccccccccchhhhHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHhccCCCCCCceeccHhHHHHHHHHHHhhcchhhhee Confidence 000 00000 0011111111111 111111 1223566666778899999999999999999 Q ss_pred eecchhhccceeecccccccCCCCCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHH Q lcl|Aclame:pro 59 VTTVDQIEGQVVDVGVSGLYTGRKAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQ 136 (341) Q Consensus 59 v~~V~~~~Ge~i~lgv~g~iagrt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~ 136 (341) ++++......++.. +++-++-...+ .....+..+...|..++.---+.|++++|+.= .++++..+.+.+.+ T Consensus 119 v~~~~~~~~p~~~~--~~~~a~~v~E~~~~~~~~~~f~~v~~~~~k~~~~i~is~ell~Ds-----~~~l~~~i~~~la~ 191 (352) T protein:vir:78 119 LTNIKGLEIPRVSY--TLDDDDFITDVETAKELKLKGDTVKFTTNKFKVFAAISDTVIHGS-----DVDLVNWVENALQS 191 (352) T ss_pred eEecCCceEEEEec--CCCcccccccccccccccccceeeeecceeEEeechhhHHHHhhh-----hHHHHHHHHHHHHH Confidence 98876544333322 22223322221 11122445555666666555577887776532 25788889999999 Q ss_pred HHhhhHHHHhh-ccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCC-chhhhHHHHHHHHHhcccch Q lcl|Aclame:pro 137 MFALDIMRIGW-NGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETN-GDYRTLDAMASDIINNQIHP 214 (341) Q Consensus 137 ~~alD~i~IGf-nG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~g-gdy~nLDalv~d~~~~li~~ 214 (341) .++.=..-+.| +| +....|. |.+ ....+...++ ..| |.+ .+++.+ +++ T Consensus 192 ~~~~~e~~~~~~~g-------~g~~~~~------g~l------------~~~~~~~~t~~~~~---d~i-~~~~~~-l~~ 241 (352) T protein:vir:78 192 GLAAKERKDALAVS-------PKSGLEH------MSF------------YNGSVKEVEGANMY---DAI-INALAD-LHE 241 (352) T ss_pred HHHHHHHHhhhhcC-------CCCcccc------cce------------eccccccccccchH---HHH-HHHHhc-cCh Confidence 88741122222 33 2222232 222 1111111112 224 433 355554 577 Q ss_pred hhccCCCeEEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEE Q lcl|Aclame:pro 215 MFRNDPRLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRK 294 (341) Q Consensus 215 ~~r~~~dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~ 294 (341) -|++. -+++|.+.-... -.++....+.|- ++. -..++-|+|++....+|. +++=.| |.||.. +.+. T Consensus 242 ~~~~~--a~~~mn~~t~~~-l~~~~~~~~~~~--~~~--~~~~llG~PV~~~~~~~~--~~~Gdf---~~~~~~--~~~~ 307 (352) T protein:vir:78 242 DYRDN--ATIYMRYADYVK-IISVLSNGTTNF--FDT--PAEKVFGKPVVFTDAAVK--PIVGDF---NYFGIN--YDGT 307 (352) T ss_pred hhhcC--CEEEEehHHHHH-HHHHHhccCCcc--ccc--CCccccccceEEecCCCc--eeEeeh---hhhhhh--hhhh Confidence 78764 467777654332 234444344331 111 124678999999998875 565544 444431 1111 Q ss_pred EEEcccccceeccccceeecc-c-------hheeeeccccccCCcch Q lcl|Aclame:pro 295 AKHESDRKRSKTHTGAWKVTQ-W-------VCWKRSPLTTQKKSTSA 333 (341) Q Consensus 295 ~~d~~~r~rve~y~s~YvVEd-y-------g~~~~~~~~~~~~~~~a 333 (341) .. ++.++.. .-.-.|+... + .+|....++..+.+.|+ T Consensus 308 ~~-~~~~~~~-~g~~~f~~~~r~Dg~~~~~eA~~~l~~~a~~~~~~~ 352 (352) T protein:vir:78 308 TY-DTDKDVK-KGEYLFVLTAWYDQQRTLDSAFRIAKAKESTGSLPS 352 (352) T ss_pred ee-eeecccc-CCeeEEEEEeeeCceeechhheEEEEeecccCCCCC Confidence 11 1111111 1011344322 3 34444444444455555 No 69 >protein:vir:104256 Length: 458 # NCBI annotation: major head protein precursor # Family: family:all:27070 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006977;genbank:gi:46401878;genbank:GeneID:2777673 Probab=97.62 E-value=1.3e-05 Score=47.33 Aligned_cols=294 Identities=11% Similarity=0.019 Sum_probs=137.4 Q ss_pred CCccccHHH-HHHHHHHHHHHHHhh---------------C-chhhcceeecChHHHHHHHHHHHhhHHHhcccceecch Q lcl|Aclame:pro 1 MSQILTQSA-REYMDNFAQQLAKSY---------------G-VSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVD 63 (341) Q Consensus 1 m~~~M~~~t-r~~~~~y~~~~A~~n---------------g-v~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~ 63 (341) +....++.. ......+...+.... . .....-.+.|-+...+.+.+.+++++.+++.++++++. T Consensus 123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~g~~~ip~~~~~~ii~~~~~~~~l~~~~~~~~~~ 202 (458) T protein:vir:10 123 LYGTQENFEDEVEKLVLLSYVMEKGVFETEHGQRHLKAVNQSSSVEVSSESYETIFSQRIIRDLQKELVVGALFEELPMS 202 (458) T ss_pred chhhhhhHHHHHHHHHHHHHHHhhccchhhhhhhhhhhhhhcccCccccceehhhHhHHHHHHHHhhhhHHhhcceeecC Confidence 110001000 001111111111110 0 01112345677788999999999999999999998875 Q ss_pred hhccceeecccccccCCCCC-CCcc-------ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHH Q lcl|Aclame:pro 64 QIEGQVVDVGVSGLYTGRKA-GGRF-------TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSN 135 (341) Q Consensus 64 ~~~Ge~i~lgv~g~iagrt~-t~r~-------~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~ 135 (341) --.. .+..-..++-++-.. .+.. .....++...+..++.--.+.|+.+.|+.-. ++|...+.+.+. T Consensus 203 ~~~~-~~~~~~~~~~a~~v~e~~~~~~~~~~~~~~~~~~~i~~~~~k~~~~v~is~ell~ds~-----~~~~~~i~~~l~ 276 (458) T protein:vir:10 203 SKIL-TMLVEPDAGKATWVAASTYGTDTTTGEEVKGALKEIHFSTYKLAAKSFITDETEEDAI-----FSLLPLLRKRLI 276 (458) T ss_pred Ccce-EEEEecCCcceeecccccccccccccccccccceeeEeeeeeEEeeehhhHHHHhcch-----HHHHHHHHHHHH Confidence 4221 112222222221111 1111 1122455556666666666788877665432 679999999999 Q ss_pred HHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCC--chhhhHHHHHHHHHhcccc Q lcl|Aclame:pro 136 QMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETN--GDYRTLDAMASDIINNQIH 213 (341) Q Consensus 136 ~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~g--gdy~nLDalv~d~~~~li~ 213 (341) +.++.-.-.--+||+- +..| +|.+...-... ...+...++ .+-.+.|.+ .+++.. ++ T Consensus 277 ~~i~~~~d~~~l~G~G-------~~~p------~Gi~~~~~~~~------~~~~~~~~~~~~~~~~~~~i-~~~~~~-l~ 335 (458) T protein:vir:10 277 EAHAVSIEEAFMTGDG-------SGKP------KGLLTLASEDS------AKVVTEAKADGSVLVTAKTI-SKLRRK-LG 335 (458) T ss_pred HHHHHHHHHHhhcCCC-------CCcc------ceeeecccccc------cceeecccccccccccHHHH-HHHHHh-hh Confidence 9998666666678832 1123 33333111100 011111111 111223333 334543 46 Q ss_pred hhhccCCCeEEEeChHHHHHHHhHHHhccC-hhHHH--HHH---HHHHHhhcCcccccCCcCCCC----CEEEeccCC-c Q lcl|Aclame:pro 214 PMFRNDPRLTVFVGSGLIGAAQAKLYDKAD-KPSEQ--IAA---QKLDKTIAGRPAYVPPFLPDN----AMVVTIPEN-L 282 (341) Q Consensus 214 ~~~r~~~dLVvivG~dLla~~~~~l~n~~~-~ptE~--~a~---~~i~k~igGlpa~~vPffP~~----~ilVT~l~N-L 282 (341) +.++. .-+++|.+..+. ++..+...+ .|.-. ... ..-..++-|+|++...++|+. .+++=.+.+ . T Consensus 336 ~~~~~--~~~~v~~~~~~~--~l~~lkd~~G~~i~~~~~~~~~~~~~~~~l~G~pv~~~~~~p~~~~~~~~~~~~f~~~~ 411 (458) T protein:vir:10 336 RHGLK--LSKLVLIVSMDA--YYDLLEDEEWQDVAQVGNDSVKLQGQVGRIYGLPVVVSEYFPAKANSAEFAVIVYKDNF 411 (458) T ss_pred hhhcC--CCEEEEcHHHHH--HHHhhcccCCceeeccccccccccCcCceecceeeEEccccccccCCcceEEEEecccE Confidence 66654 457899988765 344333222 22110 011 111246889999999999986 355556643 3 Q ss_pred EEEEecCcEEEEEEEcccccceecccc-ceeecc-ch--heeeeccccccCCcc Q lcl|Aclame:pro 283 QVLTQHGTAQRKAKHESDRKRSKTHTG-AWKVTQ-WV--CWKRSPLTTQKKSTS 332 (341) Q Consensus 283 sIY~Q~gs~RR~~~d~~~r~rve~y~s-~YvVEd-yg--~~~~~~~~~~~~~~~ 332 (341) -|+. ++..+ +. +|.+.+++. +|+.|- .| ++....|..+..+++ T Consensus 412 ~~~~-~~~~~--v~----~d~~~~~~~~~~~~~~r~~~~v~~~~a~v~~~~aa~ 458 (458) T protein:vir:10 412 VMPR-QRAVT--VE----RERQAGKQRDAYYVTQRVNLQRYFANGVVSGTYAAS 458 (458) T ss_pred EEEE-eeceE--EE----eecccCCCceEEEEEEEecceEecccceEEEeeccC Confidence 3332 22222 11 222222222 444433 22 333333433333333 No 70 >protein:vir:9704 Length: 394 # NCBI annotation: hypothetical protein # Family: family:all:21 # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795466;genbank:gi:28876225;genbank:GeneID:1257769 Probab=97.60 E-value=3.9e-05 Score=44.78 Aligned_cols=274 Identities=9% Similarity=0.023 Sum_probs=135.2 Q ss_pred CCcc--------ccHHHHHHHHHHHHHHH-------HhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhh Q lcl|Aclame:pro 1 MSQI--------LTQSAREYMDNFAQQLA-------KSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQI 65 (341) Q Consensus 1 m~~~--------M~~~tr~~~~~y~~~~A-------~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~ 65 (341) +... ........+..+..... ...|+....-.+.|-+.....+++.+.+.+.+++.++++++..- T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~gg~liP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~ 170 (394) T protein:vir:97 91 VNDFIRSKGKIVNDSLRFEGKDEVLMPINETTPVEPQKDGIKKENAKPVSSEEILYTPAREVKTVVDLKPFTTVYQAKKA 170 (394) T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhhhhccccccccccccChHHHHHHHHHHhhhhhhhhhhceeeeccCc Confidence 0000 00111222222222221 12223333445667777888999999999999999999999887 Q ss_pred ccceeecccccccCCCCCC-Cccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhH Q lcl|Aclame:pro 66 EGQVVDVGVSGLYTGRKAG-GRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDI 142 (341) Q Consensus 66 ~Ge~i~lgv~g~iagrt~t-~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~ 142 (341) .+....+..++.-++-... +..+ ..+.++...+.+++.=--+.|+.++|+ .+ .++|+..+.+.+.+.++.-. T Consensus 171 ~~~~~~~~~~~~~~~~v~E~~~~~~~~~~~~~~v~l~~~k~~~~i~is~ell~-ds----~~~~~~~i~~~la~~~~~~~ 245 (394) T protein:vir:97 171 SGKYPVLQRATTKMVTVAELEKNPALAKPDFKDVAWNIDTYRGAIPLSQESID-DA----DVDLVGIVSESISQIKVNTT 245 (394) T ss_pred ceEEEEEecCCCccceecccccccccccccceeEEeehhheeeehhhHHHHHh-hh----hHHHHHHHHHHHHHHHHHHH Confidence 7765544333222222211 1222 223555556666554434555555554 12 35788888888888777532 Q ss_pred HHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCe Q lcl|Aclame:pro 143 MRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRL 222 (341) Q Consensus 143 i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dL 222 (341) -.--.+|... +++..-.+.|.++ ++++..+++.+. - T Consensus 246 ~~~i~~g~~~---------------------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~----a 281 (394) T protein:vir:97 246 NDAIAKVLKS---------------------------------------FTTKTVKNLDEIK-ALLNGGFDPAYN----V 281 (394) T ss_pred HHHHhhcccc---------------------------------------ccccccccHHHHH-HHHHhhhhhhhC----C Confidence 1111122110 1111112344443 455556677653 3 Q ss_pred EEEeChHHHHHHHhHHHh-ccChhHHH-HHHHHHHHhhcCcccccCCc--CCCCCEEEeccCCcEEEEecCcEEEEEEEc Q lcl|Aclame:pro 223 TVFVGSGLIGAAQAKLYD-KADKPSEQ-IAAQKLDKTIAGRPAYVPPF--LPDNAMVVTIPENLQVLTQHGTAQRKAKHE 298 (341) Q Consensus 223 VvivG~dLla~~~~~l~n-~~~~ptE~-~a~~~i~k~igGlpa~~vPf--fP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~ 298 (341) +++|.+.... .+..+. ....|-=. -.......++-|+|++..|. +|.+.+++=.+++...++-+....=.+.++ T Consensus 282 ~~v~n~~~~~--~l~~lkd~~G~~i~~~~~~~~~~~~l~G~pv~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~ 359 (394) T protein:vir:97 282 SLIVSQSFYQ--TLDTLKDGNGRYLLQDDITAVSGKVLLGKPVFVLSDEVLGANKAFIGDFKRGVLFADRKDLGLRWADN 359 (394) T ss_pred EEEEcHHHHH--HHHHhhccCCCeeeecCcCCCCCceeccceeEEecccccCCccEEEeeccccEEEEEecceEEEEecc Confidence 6889887654 344332 22222100 00001124789999998764 777788888888754444333332222222 Q ss_pred ccccceecccccee--------eccchheeeeccccccCCc Q lcl|Aclame:pro 299 SDRKRSKTHTGAWK--------VTQWVCWKRSPLTTQKKST 331 (341) Q Consensus 299 ~~r~rve~y~s~Yv--------VEdyg~~~~~~~~~~~~~~ 331 (341) + .|..+|. |-+-.+|....++..+.|= T Consensus 360 ~------~~~~~~~~~~r~d~~v~~~~a~~~~~~~~~~~p~ 394 (394) T protein:vir:97 360 E------IYGQYLQAVLRFGVSKVDDKAGYYVTFTPEPLPL 394 (394) T ss_pred c------ccceeEEEEEEEccEEecccceEEEEecccccCC Confidence 1 1222333 3333445555555443322 No 71 >protein:vir:95963 Length: 395 # NCBI annotation: ORF009 # Family: family:all:635 # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239802;genbank:gi:66395459;genbank:GeneID:5132880 Probab=97.60 E-value=3.4e-05 Score=45.08 Aligned_cols=301 Identities=10% Similarity=0.046 Sum_probs=142.6 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) +...+..+-|+.+++... +. .....+.|-+.+.+.+++.+++.|.+++.++++++.- ...+-...+++-+. T Consensus 71 ~~~~l~~ee~~~~~~~~~------~t-~~~gG~liP~~~~~~Ii~~l~~~s~i~~~~~v~~~~~--~~~i~~~~~~~~a~ 141 (395) T protein:vir:95 71 SQDPLTSEERKFFNDINY------DV-GYTDEKILPETVVERVFDDLQKDHPLLSKINFQNAGI--KTRVIKADPAGQAV 141 (395) T ss_pred CccccchHHHHHHHHHhh------cc-CCCCceeccHHHHHHHHHHHHhhhhhhhhceeEecCC--ceEEEEecCCcceE Confidence 223345555555443221 11 1223467888889999999999999999999988752 12333322223222 Q ss_pred CCC--CCc-cccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 81 RKA--GGR-FTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 81 rt~--t~r-~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) -.. .++ ....+.++...+.+++.---+.|+.++|+.= ..+++..+++.+.++++.=.-.--+||+-...+ T Consensus 142 w~~e~~~~~~~~~~~f~~i~l~~~kl~~~~~iS~ell~ds-----~~~ie~~i~~~la~~ia~~~~~a~i~G~G~~~~-- 214 (395) T protein:vir:95 142 WGKVFGEIKGQLDAAFREENFTQYKLTCFVVLPDDLSTFG-----PAWIERFVRTQIQEAISVALESAIINGGGAAKT-- 214 (395) T ss_pred EeecccccCccccccceeeeeceeeEEEeecccHHHHhcc-----hhHHHHHHHHHHHHHHHHHHhhheeeccCCCCc-- Confidence 111 111 1223455556666666555578888877521 246888999999999988777777788543221 Q ss_pred hhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHH---hcc----cchhhccCCCeEEEeChHH Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDII---NNQ----IHPMFRNDPRLTVFVGSGL 230 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~---~~l----i~~~~r~~~dLVvivG~dL 230 (341) -|. |+|..+... ....+++... + --.+.+++.++..+. ..+ .....+....++++|.+.. T Consensus 215 ---qP~------Gil~~~~~~--~~~~~~~~~~-~-~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~mn~~t 281 (395) T protein:vir:95 215 ---QPV------GLMKDVNTN--SGAVTDKASS-G-TLTFADADTTILELNDVLKNLSVDEKGKELKIDGKVALVVNPRD 281 (395) T ss_pred ---Cce------eeeeccccc--cccccccccc-c-hhhhhhhHhhHHHHHHHHHhhccccccchhhhcCceEEEEcchh Confidence 132 666422111 0011111100 0 012333332222211 110 0011223456778888754 Q ss_pred HHHHHh-HHHh-ccChhHHHHHHHHHHHhhc-CcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcc--ccccee Q lcl|Aclame:pro 231 IGAAQA-KLYD-KADKPSEQIAAQKLDKTIA-GRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHES--DRKRSK 305 (341) Q Consensus 231 la~~~~-~l~n-~~~~ptE~~a~~~i~k~ig-Glpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~--~r~rve 305 (341) ..+... ++.. ....|. ..+| |+|++.-++||++.+++-.+++..|+...| .+-...++. .++++. T Consensus 282 ~~~~~g~~~~~~~~G~~~---------~~lg~g~~v~~~~~~p~~~i~fgdfs~y~i~~r~~-~~i~~~~~~~~~~d~~~ 351 (395) T protein:vir:95 282 SWDVQARYTYLTANGGFV---------TVLPYNVTIITSEFVPEGKLVAFVTDRYNAVRGGG-LTVKKFDQTLALEDAVL 351 (395) T ss_pred hhhcCCcceeccCCCcce---------eccCCcceEEEcCCCCCCcEEEEecccEEEEEecc-eEEEeccchhhhCCcEE Confidence 433211 1111 111110 1122 778899999999999999999876754433 333222211 112222 Q ss_pred cccc---ceeeccchheeeeccccccCC-----cchhcc-cccC Q lcl|Aclame:pro 306 THTG---AWKVTQWVCWKRSPLTTQKKS-----TSALNH-RSER 340 (341) Q Consensus 306 ~y~s---~YvVEdyg~~~~~~~~~~~~~-----~~a~~~-~~~~ 340 (341) .+-. +-.+=|-.+|...+++..+.+ ++|... -.|- T Consensus 352 f~~~~r~dg~~~~~~A~~~l~i~~~~~~~~~~~~~~~~~~~~~~ 395 (395) T protein:vir:95 352 FTAKTFAYGQPDDNKASAVYDLKVASAPRRQTSAGGTTDGIAEA 395 (395) T ss_pred EEEEEEECCEEeccccEEEEEeeccCCCCCCCCCCCCCCccccC Confidence 1100 111112223333333332222 111110 0011 No 72 >protein:vir:1638 Length: 298 # NCBI annotation: Structural protein # Family: family:all:966 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695059;genbank:gi:23455750;genbank:GeneID:955469 Probab=97.57 E-value=1.3e-05 Score=47.37 Aligned_cols=279 Identities=10% Similarity=0.006 Sum_probs=150.9 Q ss_pred HHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCCC--ccccccCCCCcc Q lcl|Aclame:pro 20 LAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAGG--RFTKQVGVGGHK 97 (341) Q Consensus 20 ~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t~--r~~r~~~l~~~~ 97 (341) ||.. -.+.|-|...+.+++.+++.|-+++...++++.--. .++-.-.+++.++-...+ .....+.++... T Consensus 1 ma~~-------gG~lvp~~~~~~ii~~~~~~s~i~~l~~~~~~~~~~-~~ip~~~~~~~a~~v~E~~~~~~~~~~f~~v~ 72 (298) T protein:vir:16 1 MVLN-------KGTLFDPTLVTDLISKVAGKSSIARLSAQKPIPFNG-EKVFTFTMDSEIDVVAESGKKTHGGVTLAPQT 72 (298) T ss_pred Cccc-------CcceechhHHHHHHHHHHhhhhhhhhcceeeccCCc-eEEEEEecCcceEEecCCccccccccceeEEE Confidence 2222 234688899999999999999999999999876422 234333334444333221 112234566777 Q ss_pred eEEEEeeeeeeecHHHHH-HHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHH Q lcl|Aclame:pro 98 YKLAETDSCAAITWAMLC-QWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVK 176 (341) Q Consensus 98 Y~c~qtn~dt~i~y~~lD-aWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~R 176 (341) +..++.---+.|+.++|- .+-. ..+|++.+.+.++++++.-.-.-.+||+--..-+... +.+. .. T Consensus 73 l~~~k~a~~~~iS~ell~~s~d~---~~~l~~~i~~~la~ai~~~~d~~~l~G~~~~~g~~~~--~~~~-~~-------- 138 (298) T protein:vir:16 73 MVPIKVEYGARISDEFMYASDEE---KINILQEFNDGFAKKVARGIDLMAFHGVNPRLGTASA--VIGT-NH-------- 138 (298) T ss_pred EeeeeEEEeehhhHHHhhcCccc---HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc--cccc-cc-------- Confidence 777777767778777662 2222 3578889999999998888888888984322111100 0000 00 Q ss_pred HhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHH-hccChhHHHHHHH-HH Q lcl|Aclame:pro 177 NRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLY-DKADKPSEQIAAQ-KL 254 (341) Q Consensus 177 e~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~-n~~~~ptE~~a~~-~i 254 (341) .....+. .+..++.+ .++++.+.+++.. +...+++ +. +++|.+...+ .+..+ .....|-=.-..+ .- T Consensus 139 ---~~~~~~~-~~~~~~~~--~~~~~~i~~~~~~-~~~~~~~-~~-~~vmn~~~~~--~l~~lkd~~G~~i~~~~~~~~~ 207 (298) T protein:vir:16 139 ---FDSKVTQ-KVEAPRGI--ADPNGAIENAVEL-LTGVDAD-VT-GIAINPSFRS--ALAKQKDLQDNALFPELKWGAT 207 (298) T ss_pred ---ccccccc-cccccccc--ccHHHHHHHHHHH-hhhcCCC-cc-EEEEcHHHHH--HHHHhhccCCCeeecCcccCCC Confidence 0000000 11111111 1233334444433 2333333 22 5888887665 23333 2222221000000 01 Q ss_pred HHhhcCcccccCCcCCCC------CEEEeccCCcEEEEecCcEEEEEEEcccccce-ecc-cc---ceeeccc-h--hee Q lcl|Aclame:pro 255 DKTIAGRPAYVPPFLPDN------AMVVTIPENLQVLTQHGTAQRKAKHESDRKRS-KTH-TG---AWKVTQW-V--CWK 320 (341) Q Consensus 255 ~k~igGlpa~~vPffP~~------~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rv-e~y-~s---~YvVEdy-g--~~~ 320 (341) ..++-|+|++..+++|++ .+++-.+++.-.|..++..+-.+.+.-+-+.. .+| +. +|.+|.+ | ... T Consensus 208 ~~~l~G~PV~~~~~v~~~~~~~~~~~~~GDfs~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~v~~ra~~r~d~~v~~ 287 (298) T protein:vir:16 208 PDTINGLPVDVNKTVSDMSLTQRDRAIIGDFANGFKWGYAKEVPLEVIQYGDPDNSGLDLKGYNQVYIRAELFLGWGILD 287 (298) T ss_pred CceecceeeEEecccccccCCCccEEEEeeccceEEEEEecCceEEEeeccCCcCcchhhhhcCcEEEEEEEEEccEeec Confidence 257999999999999975 46778899987787777666666543322221 122 22 6666664 3 334 Q ss_pred eeccccccCCc Q lcl|Aclame:pro 321 RSPLTTQKKST 331 (341) Q Consensus 321 ~~~~~~~~~~~ 331 (341) ...|..++.++ T Consensus 288 ~~a~~~l~~at 298 (298) T protein:vir:16 288 ATKFARVTEAN 298 (298) T ss_pred ccceEEEeecC Confidence 44566666666 No 73 >protein:vir:4830 Length: 397 # NCBI annotation: MPL-7201 # Family: family:all:21 # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038327;genbank:gi:9634653;genbank:GeneID:1262632 Probab=97.57 E-value=2.8e-05 Score=45.59 Aligned_cols=286 Identities=8% Similarity=0.068 Sum_probs=151.2 Q ss_pred CCc---cccHHHHHHHHHHHHHHH-----HhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeec Q lcl|Aclame:pro 1 MSQ---ILTQSAREYMDNFAQQLA-----KSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDV 72 (341) Q Consensus 1 m~~---~M~~~tr~~~~~y~~~~A-----~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~l 72 (341) +.. .+.+.-+..|.+|+..-- .........-.+.|-+.+...+++.+.+.+.+++.+++++++...|...-. T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~gg~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 158 (397) T protein:vir:48 79 LTKSEEEVKAGFVKDFKNLVRGRYQNLLDSKTDASGSDAGLTIPQDIQTAIHTLVRQYDSLQEYVNVENVTTLTGSRVYE 158 (397) T ss_pred ccchhhHHHHHHHHHHHHHHhhhhhHHHHHhhccCCccccccccHHHHHHHHHHHHHHHHHHhhhceeeccCCcceEEEE Confidence 111 122233333444432211 011111122456788888899999999999999999999999888876633 Q ss_pred --ccccccCCCCCCC-ccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhh Q lcl|Aclame:pro 73 --GVSGLYTGRKAGG-RFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGW 147 (341) Q Consensus 73 --gv~g~iagrt~t~-r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGf 147 (341) ...++.+.....+ ..+ ..+.++...+..++.---+.|+.+.|+.-. .+|...+.+.+.+.++.-.-.--+ T Consensus 159 ~~~~~~~~a~~v~E~~~~~~~~~~~~~~v~~~~~k~~~~~~iS~ell~ds~-----~~l~~~v~~~l~~~~~~~~d~~il 233 (397) T protein:vir:48 159 KWADITGLAKLDDEAGSIGTNDDPKLYPIRYAIKRYAGISTVTNSLLADSA-----ENILAWLSGWIAKKVVVTRNKAIL 233 (397) T ss_pred eecCCCcceeeeccccccccccccceeeEEeeheeeeeehhhHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHHHh Confidence 2223333333222 111 123344444444444434677777775432 478888999999998887777777 Q ss_pred ccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeC Q lcl|Aclame:pro 148 NGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVG 227 (341) Q Consensus 148 nG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG 227 (341) +|+..+. | .+..-. .|.++ +++.. +++.++. .-+++|. T Consensus 234 ~G~g~~~-------~----------------------------~~~~~~---~d~i~-~~~~~-l~~~~~~--~a~~v~n 271 (397) T protein:vir:48 234 EAIATLP-------T----------------------------KPTLTK---WDDII-DLQAK-VDPAIKQ--TSFFLTN 271 (397) T ss_pred hcccccc-------c----------------------------cccccc---HHHHH-HHHHH-hhhhhcC--CCEEEEC Confidence 8854211 0 011122 34333 34443 4666664 3588999 Q ss_pred hHHHHHHHhHHHh-ccChhH--HHHHHHHHHHhhcCcccccCC--cCC-----CCCEEEeccCCcEEEEecCcEEEEEEE Q lcl|Aclame:pro 228 SGLIGAAQAKLYD-KADKPS--EQIAAQKLDKTIAGRPAYVPP--FLP-----DNAMVVTIPENLQVLTQHGTAQRKAKH 297 (341) Q Consensus 228 ~dLla~~~~~l~n-~~~~pt--E~~a~~~i~k~igGlpa~~vP--ffP-----~~~ilVT~l~NLsIY~Q~gs~RR~~~d 297 (341) +..++ .++.+. ....|- .-. ...-..++-|+|++.++ ++| ...+++=.|++...++.++..+-.+.+ T Consensus 272 ~~~~~--~L~~lkd~~G~~i~~~~~-~~~~~~~l~G~PV~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~i~~~~ 348 (397) T protein:vir:48 272 TSGFT--ALKKVKNAFGDYLMERDV-KSPTGYSIDGFAVKEVADRWLANASSGAMPLYFGDLKQAVTLFDRQQMSLLSTN 348 (397) T ss_pred HHHHH--HHHHhhcCCCceeeccCc-CCCCCceeccceeEEecccccCCcCCCceEEEEEeccceEEEEeecceEEEEec Confidence 98765 344442 222220 000 00112479999998765 344 344777788886655555554433332 Q ss_pred ccc----ccceecc---ccceeeccchheeeeccccccCCc---chhcc Q lcl|Aclame:pro 298 ESD----RKRSKTH---TGAWKVTQWVCWKRSPLTTQKKST---SALNH 336 (341) Q Consensus 298 ~~~----r~rve~y---~s~YvVEdyg~~~~~~~~~~~~~~---~a~~~ 336 (341) ..+ ++.+.-+ .-++.|-+-.+|....++....++ +++.- T Consensus 349 ~~~~~~~~~~~~~r~~~r~d~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (397) T protein:vir:48 349 IGGGAFETDTTKIRVIDRFDVVATDTESFVPASFKAIADQKGNLGSTAV 397 (397) T ss_pred cchhhhhcCceeEEEEeeeccEEecccceEEEEecccccCCCCccccCC Confidence 222 2222111 114444455566666666654442 33333 No 74 >protein:vir:93881 Length: 387 # NCBI annotation: ORF011 # Family: family:all:658 # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239938;genbank:gi:66395599;genbank:GeneID:5130947 Probab=97.52 E-value=5.1e-05 Score=44.10 Aligned_cols=281 Identities=9% Similarity=0.018 Sum_probs=137.9 Q ss_pred CCccccHHHHHHHHHHHHHHHHhh----------------Cch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecch Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSY----------------GVS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVD 63 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~n----------------gv~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~ 63 (341) -++..+......|..|+.+..... ++. +..-.+.|-+.+...+++.+.+.+.+.+.++++++. T Consensus 79 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~al~~~t~s~gG~~IP~~~~~~Ii~~~~~~~~l~~~~~v~~~~ 158 (387) T protein:vir:93 79 QSLNDHEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLSKEIVSEPFAKNQLREKARLTNIK 158 (387) T ss_pred CCcchhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccCcCCCCceeechhHHHHHHHHHHhhchhhhheeeeecC Confidence 111122233333444443332110 110 112256777777888999999999999999999887 Q ss_pred hhccceeecccccccCCCCCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 64 QIEGQVVDVGVSGLYTGRKAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALD 141 (341) Q Consensus 64 ~~~Ge~i~lgv~g~iagrt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD 141 (341) ..+.-++.. ++.-++-...+ .....+.++...|.+++.---+.|+.++|+- + .++|+..+.+.++++++.= T Consensus 159 ~~~~p~~~~--~~~~a~~v~E~~~~~~~~~~f~~v~~~~~k~~~~~~iS~ell~D-s----~~~l~~~i~~~la~~~~~~ 231 (387) T protein:vir:93 159 GLEIPRVSY--TLDDDDFITDVETAKELKLKGDTVKFTTNKFKVFAAISDTVIHG-S----DVDLVNWVENALQSGLAAK 231 (387) T ss_pred CceEEEEee--cCCccccccCcccccccccccceeeeeheeeeeechhhHHHHhh-h----HHHHHHHHHHHHHHHHHHH Confidence 554433322 22223322221 1222345555666666655556677776642 2 3689999999999988753 Q ss_pred HHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCC Q lcl|Aclame:pro 142 IMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPR 221 (341) Q Consensus 142 ~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~d 221 (341) ..-..|.+ .+....| .|++. ...+..-++.+ ..|.+ -+++.+ +++.|+... T Consensus 232 e~~~~~~~------g~g~g~p------~g~l~------------~~~~~~v~~~~--~~d~i-~~~~~~-l~~~~~~~a- 282 (387) T protein:vir:93 232 ERKDALAV------SPKSGLD------HMSFY------------NGSVKEVEGAD--MYDAI-INALAD-LHEDYRDNA- 282 (387) T ss_pred HHHhHhhc------CCCcccc------ceeee------------ccccccccccc--hHHHH-HHHHhc-cChhhhcCC- Confidence 22222321 1222222 23331 11111112222 13433 455654 577787643 Q ss_pred eEEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccc Q lcl|Aclame:pro 222 LTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDR 301 (341) Q Consensus 222 LVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r 301 (341) +++|.+.-+. +..+++...+.|- +++ -..++-|+|++....+|. +++-.|+. ||. + +++...+ +.+ T Consensus 283 -~~~mn~~t~~-~~~~~~~d~~~~~--~~~--~~~~llG~PV~~~~~~~~--~~~GDf~~---~~~-~-~~~~~~~-~~~ 348 (387) T protein:vir:93 283 -TIYMRYADYV-KIISVLSNGTTNF--FDT--PAEKVFGKPVVFTDAAVK--PIVGDFNY---FGI-N-YDGTTYD-TDK 348 (387) T ss_pred -EEEEechHHH-HHHHHHhcCCCcc--ccc--CCccccccceEEecCCCc--eeeeehhh---hhe-e-hhhheee-ecc Confidence 6777764322 1234444333321 110 124788999999998875 66666554 432 1 1222211 111 Q ss_pred cceecc-ccceeec-cc-------hheeeeccccccCCcch Q lcl|Aclame:pro 302 KRSKTH-TGAWKVT-QW-------VCWKRSPLTTQKKSTSA 333 (341) Q Consensus 302 ~rve~y-~s~YvVE-dy-------g~~~~~~~~~~~~~~~a 333 (341) . ... .-+|+.. -+ .+|....++..+.|+|+ T Consensus 349 ~--~~~~~~~~~~~~r~d~~v~~~eA~~~l~~k~~~~~~~~ 387 (387) T protein:vir:93 349 D--VKKGEYLFVLTAWYDQQRTLDSAFRIAKAKENTGSLPS 387 (387) T ss_pred c--ccCCceeEEEEeeeCceeechhheEEEEeecCCCCCCC Confidence 1 111 1144433 23 34444455555555666 No 75 >protein:vir:102119 Length: 404 # NCBI annotation: phage major capsid protein, HK97 family # Family: family:all:21 # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699941;genbank:gi:110804052;genbank:GeneID:4206662 Probab=97.51 E-value=3.7e-05 Score=44.90 Aligned_cols=296 Identities=11% Similarity=0.071 Sum_probs=142.2 Q ss_pred CCccccHHHHHHHHHHHHHHHHhh------------CchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSY------------GVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQ 68 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~n------------gv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge 68 (341) .........+.....++....... .-...+-.+.|-+.+...+.+.+++.+.+++.+++++|....|. T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~gg~~vP~~~~~~ii~~~~~~~~l~~l~~~~~~~~~~g~ 155 (404) T protein:vir:10 76 VIYNGALFVRAIADNLLKQKNQRGLNLSEKEINAISENIDEDGGYAVPEDIQTKINTRLKDTTDLYNMVDYEPVFTRSGS 155 (404) T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcchhhHHhhhccccCCCCceeechhHHHHHHHHHhhhhhHhhhhceeeccCCccc Confidence 110111222222222222221111 11122345677778889999999999999999999999988876 Q ss_pred eee-cccccccCCCCCCC-cccc---ccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 69 VVD-VGVSGLYTGRKAGG-RFTK---QVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIM 143 (341) Q Consensus 69 ~i~-lgv~g~iagrt~t~-r~~r---~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i 143 (341) ... ...+++-+.-...+ ..+. .+.++...+..++.---+.|+-+.|+. . .++|...+.+.+.+.++.-.- T Consensus 156 ~~~~~~~~~~~~~~v~e~~~~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~d---s--~~~l~~~i~~~la~~~~~~~~ 230 (404) T protein:vir:10 156 RTYEKRSKQKPMKPLSENQQIPTNGDNGKLERFNFKLKDLADFMSIPNDLLKF---A--DKSLEDWIINWFVDKVRITRN 230 (404) T ss_pred eEEEEecCCcceeeccccccccccccccceeeeEeeheeeEeeehhhHHHHhh---c--HHHHHHHHHHHHHHHHHHHHH Confidence 532 22233323322221 1111 123344444444433335555555542 1 357888888888888776554 Q ss_pred HHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeE Q lcl|Aclame:pro 144 RIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLT 223 (341) Q Consensus 144 ~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLV 223 (341) .-=++|+- ++ .+|.+ +.... ....+..++...|..|..++.. -+++-|+. ..+ T Consensus 231 ~~il~G~g----~~--~~~~g----------i~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~--~~~ 283 (404) T protein:vir:10 231 AEILYGAG----GD--EHATG----------IMTAN-----KFKKITLPKSPALKDFKKCKNV----ELLNVFKA--TSS 283 (404) T ss_pred HHHhhcCC----CC--Ccccc----------eeecc-----ccceeeccccccHHHHHHHHHh----hhhccccC--CCE Confidence 44456622 11 11221 00000 1112334455566666544332 24555553 468 Q ss_pred EEeChHHHHHHHhHHHh-ccChhHHH-HHHHHHHHhhcCcccccCC-cCCCCC-----EEEeccCCcEEEEecCcEEEEE Q lcl|Aclame:pro 224 VFVGSGLIGAAQAKLYD-KADKPSEQ-IAAQKLDKTIAGRPAYVPP-FLPDNA-----MVVTIPENLQVLTQHGTAQRKA 295 (341) Q Consensus 224 vivG~dLla~~~~~l~n-~~~~ptE~-~a~~~i~k~igGlpa~~vP-ffP~~~-----ilVT~l~NLsIY~Q~gs~RR~~ 295 (341) ++|.+..++ .++.+. ....|-=. ........++-|+|++.+| .+|+.+ +++-.+++.-..+.++...=.+ T Consensus 284 ~v~n~~~~~--~L~~lkd~~G~~l~~~~~~~~~~~~l~G~PV~~~~~~~~~~~~~~~~~~~gd~s~~~~~~~~~~~~i~~ 361 (404) T protein:vir:10 284 WIVNQDGFN--YLDSLEDKTGRPYLQPDPKDPTQYRFLGLPVIELPNDLLLSTESAIPVLLGDTKEAYKYVSDGAYELAT 361 (404) T ss_pred EEEcHHHHH--HHHHhhccCCceeeccCcCCCCCccccceeeEEecccccCCCCCccEEEEEeccccEEEEEecceEEEE Confidence 899998655 343332 11121000 0000112478899998654 456554 7888888754334334443332 Q ss_pred EEcccccceecccc--------ceeeccchheeeeccccccCCcch Q lcl|Aclame:pro 296 KHESDRKRSKTHTG--------AWKVTQWVCWKRSPLTTQKKSTSA 333 (341) Q Consensus 296 ~d~~~r~rve~y~s--------~YvVEdyg~~~~~~~~~~~~~~~a 333 (341) .+++. +.++...- ++.|-+..+|....++.. ++|| T Consensus 362 ~~~~~-~~~~~~~~~~~~~~r~d~~v~~~~a~~~~~~~~a--a~~~ 404 (404) T protein:vir:10 362 TNIGA-GAFETNTTKARIIMRIDGNVKDSEALLIAEIPVE--SVQA 404 (404) T ss_pred ecccc-chhhcCceEEEEEEeeccEEecccceEEEEeecc--cCCC Confidence 22221 22221111 444444445555555555 3444 No 76 >protein:vir:9643 Length: 377 # NCBI annotation: major coat protein # Family: family:all:635 # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795405;genbank:gi:28876178;genbank:GeneID:1257724 Probab=97.51 E-value=3.9e-05 Score=44.76 Aligned_cols=286 Identities=7% Similarity=-0.024 Sum_probs=147.4 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) ....+.++.|+.|++++.. .....-.|-|-+++..++.+.+.+.|.++++++++++.- +.++-...+++-++ T Consensus 63 ~~~~lt~ee~~~~~~~~~~------~~~~~gg~lvP~~~~~~I~~~l~~~s~i~~~~~v~~~~~--~~~i~~~~~~~~a~ 134 (377) T protein:vir:96 63 KNRELTAEEIKFFNDIDKN------VGGKDKFKLLPEETMVQVFDDLVAEHPLLKVINFKNTSL--RLKALTAETSGTAV 134 (377) T ss_pred CCcccCHHHHHHHHHHHhc------CCCCCCceecCHHHHHHHHHHHHhhhhhhhhceeEecCC--ceEEEEecCCccee Confidence 4445566667666665432 123334566877889999999999999999999988742 23444444444333 Q ss_pred CCCC--Ccc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 81 RKAG--GRF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 81 rt~t--~r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) =... ++. ...+.++...+.+++.---+.|+.++|+.=. .+++..+++.+.++++.=.-.--+||+=.. T Consensus 135 wv~e~~~~~~~~~~~f~~i~l~~~kl~~~~~is~~ll~ds~-----~~le~~i~~~l~~~~~~~~~~a~i~G~G~~---- 205 (377) T protein:vir:96 135 WGDIFGEIKGQLKQAFKEQDFSQFKLTAFVVIPKDALKFGP-----KWLKQFITEQLKEAIAVALELAIVKGNGLL---- 205 (377) T ss_pred EeecccccccccCccceeEeeeeeeEEeechhhHHHhhcch-----hhHHHHHHHHHHHHHHHHHhhceEeccCCC---- Confidence 2221 122 2234566667777777667889988885322 368888999999999876656666773311 Q ss_pred hhhccchhhhhhhHHHHHHHhhcc--------ccccccceeec--CCchhhhHHHHHHHHHhccc-c---hhhccCCCeE Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKAS--------QVVDVDVYFDE--TNGDYRTLDAMASDIINNQI-H---PMFRNDPRLT 223 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~--------~v~~~~~~~~g--~ggdy~nLDalv~d~~~~li-~---~~~r~~~dLV 223 (341) - -+|+|......... -+..+ +...| +..+..++.-+..+++..+- + -..+..+..| T Consensus 206 ---~------P~Gil~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~ 275 (377) T protein:vir:96 206 ---Q------PVGLLKDLSQPTVDQSTGRDITTYKTD-KEAIADLSDLDPDTAVELLVPVMKHLSVNDKKHPLKIAGQVK 275 (377) T ss_pred ---c------ceeeeeccccccccccccccccceeec-cccccccccCChhHHHHHHHHHHHhhccccccccccccCceE Confidence 1 12454422111000 00000 01111 11222333334444432210 0 0112245789 Q ss_pred EEeChHHHHHHHhH--HHhccChhHHHHHHHHHHHhhcCcc--cccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcc Q lcl|Aclame:pro 224 VFVGSGLIGAAQAK--LYDKADKPSEQIAAQKLDKTIAGRP--AYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHES 299 (341) Q Consensus 224 vivG~dLla~~~~~--l~n~~~~ptE~~a~~~i~k~igGlp--a~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~ 299 (341) ++|-+.-..+-... ..+....| -++.|+| .+.-+++|++.+++-.+++--|.... ..|-...+ T Consensus 276 ~~mn~~t~~~~~~~~~~~~~~G~~----------~~~l~~p~~v~~s~~~p~~~i~fgdf~~Y~i~~r~-~~~i~~~~-- 342 (377) T protein:vir:96 276 LLLNPEDRWTLEAKFTSRNQFGEY----------VTVLPHGITILESLAVETGKAIAFVANRYDAFMAT-ASTIEEYD-- 342 (377) T ss_pred EEEchhhHHhccccccccCCCCCc----------eeccCCCceEEecCCCCcccEEEEEcCcEEEEEec-ccEEEeeh-- Confidence 99998643321111 11111122 1344444 56679999999999999995554433 33322222 Q ss_pred cccceeccccceee-ccc-h------heeeeccccc Q lcl|Aclame:pro 300 DRKRSKTHTGAWKV-TQW-V------CWKRSPLTTQ 327 (341) Q Consensus 300 ~r~rve~y~s~YvV-Edy-g------~~~~~~~~~~ 327 (341) +.--.++ +-+|.. +-+ | +|...+++.+ T Consensus 343 ~~~~~~d-~~~f~~~~r~dG~~~d~~a~~vl~l~~~ 377 (377) T protein:vir:96 343 QTFAMED-LQLYLTKNYFYGKAKDNHTAALLTLAGG 377 (377) T ss_pred hhhhhcC-CeEEEEEEEEcCEEecCCcEEEEEEecC Confidence 1111111 123333 222 2 3444445555 No 77 >protein:vir:8420 Length: 477 # NCBI annotation: gp15 # Family: family:all:21 # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818316;genbank:gi:29566752;genbank:GeneID:1260033 Probab=97.50 E-value=2.5e-05 Score=45.82 Aligned_cols=299 Identities=11% Similarity=0.093 Sum_probs=144.3 Q ss_pred CCccccHH-HHHHHHHHHHHH------------------HHhhCchhhcceeecChH-HHHHHHHHHHhhHHHhccccee Q lcl|Aclame:pro 1 MSQILTQS-AREYMDNFAQQL------------------AKSYGVSNVAELFNVSPQ-LETKLRAAITESAEFLKMITVT 60 (341) Q Consensus 1 m~~~M~~~-tr~~~~~y~~~~------------------A~~ngv~~~~~~Fsv~P~-~~q~L~~~iqess~FL~~Inv~ 60 (341) +....+.. ............ +......+.+-.+.|-|. ..+.+++.+++++.+++.+.++ T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~lv~~~~~~~~ii~~l~~~~~i~~~~~~~ 194 (477) T protein:vir:84 115 LAMQTVGMADEPAKERLRRHMVDVESDKEIRKIAKVGEEYRDLDRNGGTGGYAVPPLWMMNRFIELARAGRTYANLCPTE 194 (477) T ss_pred HHHHHhhhhhhHHHHHHHHHHhhhhhhhhHHHHHHhhhhhccccccCCCcceeeccchhHHHHHHHhhhcchHHHhhcee Confidence 00000000 000000000000 000001111224556665 3578999999999999999999 Q ss_pred cchhhccceeecc-cccccCCC-CC------CCcc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHH Q lcl|Aclame:pro 61 TVDQIEGQVVDVG-VSGLYTGR-KA------GGRF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLT 131 (341) Q Consensus 61 ~V~~~~Ge~i~lg-v~g~iagr-t~------t~r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~ 131 (341) +++...|..-..- .+|+..+- .. ++.. ...+.++...+.+++.---+.|+.++|+.-+ ++++..+. T Consensus 195 ~~~~~~~~~~ip~~~~~~~~a~~~~Eg~~~~~~~~~~s~~~f~~i~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~ 269 (477) T protein:vir:84 195 PLPGGTSSINIPKILTGTSTAIQAADNAALTAPSAHEVDLTDGFVQANVKTIAGQQGIAIQLLDQAA-----VSVDEFVF 269 (477) T ss_pred eecCCcceeEEEEEecCcceeeeeccCcccccccccccccceeeEEEeeeeEEeeeHHHHHHHhccc-----hhHHHHHH Confidence 9888777532111 12222111 11 1111 1234566677777776666777766666554 68999999 Q ss_pred HHHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHH---HH Q lcl|Aclame:pro 132 EFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASD---II 208 (341) Q Consensus 132 ~~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d---~~ 208 (341) +.+.+.++.=.-.--++|+-. ..+|. |.+.. .... .....+++.++..+|.+..+ ++ T Consensus 270 ~~l~~~~~~~~d~~~l~G~Gt------~~~p~------Gi~~~----~~~~----~~~~~~~~~t~~~~~~~~~~i~~~~ 329 (477) T protein:vir:84 270 RDLAADYANKLNVQVISGTGS------NNQVV------GVRAT----AGIT----QVTATSAGSALEKHQIIYQKIADAI 329 (477) T ss_pred HHHHHHHHHHHHHHHhccCCC------CCccc------eeeec----cccc----cccccccccchhhHHHHHHHHHHHH Confidence 999999886666667788421 11242 33320 0000 11122345667777766544 33 Q ss_pred hcccchhhccCCCeEEEeChHHHHHHHhHHHhccChh----H--H----H-HH---HHHHHHhhcCcccccCCcCCCC-- Q lcl|Aclame:pro 209 NNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYDKADKP----S--E----Q-IA---AQKLDKTIAGRPAYVPPFLPDN-- 272 (341) Q Consensus 209 ~~li~~~~r~~~dLVvivG~dLla~~~~~l~n~~~~p----t--E----~-~a---~~~i~k~igGlpa~~vPffP~~-- 272 (341) .. +++-++..+..+ +|.+..++ ....|-.....| . + . +. ......++.|+|++..|++|++ T Consensus 330 ~~-~~~~~~~~~~~~-v~~~~~~~-~l~~lkd~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~G~pVv~s~~~p~~~~ 406 (477) T protein:vir:84 330 QR-VHTSRFLEPEVI-VMHPRRWA-SFHAIFAGDDRPLIVPSGPGFNNLGVLTEVASQRVVGQMHGLPVVTDPTLPTTLG 406 (477) T ss_pred hh-ccccccCCccEE-EEcHHHHH-HHHHhhccCCCeeeecCcccccccccccccccccccchhcccceEecCccccccc Confidence 33 345555445544 44444333 122232222221 0 0 0 00 1112347889999999999975 Q ss_pred ------CEEEeccCCcEEEEecCcEEEEEEEcccccceecc-ccceeeccc---------hheeeeccccccCCcch Q lcl|Aclame:pro 273 ------AMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTH-TGAWKVTQW---------VCWKRSPLTTQKKSTSA 333 (341) Q Consensus 273 ------~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y-~s~YvVEdy---------g~~~~~~~~~~~~~~~a 333 (341) .+++-.++.+-| -+++.+ +...++ .+.++ ...|.|.-| .+|.....+-..-||-| T Consensus 407 ~~~d~~~i~~gd~~~~~i--~~~~~~--~~~~~~--~~~~~~~~~~~v~~~~~~~~~r~~~afv~~t~~~~~~~~~~ 477 (477) T protein:vir:84 407 TGTDQDVIHVLRASDLAL--FESSVR--MRALQE--TRAENLSVLLQVYGYLAFTAARFPQSVVEIGGTALTAPTFA 477 (477) T ss_pred ccCCcceEEEEEeceEEE--Eeecee--EEeccc--cccccceeeeeehhhhhhhhhccccceEEeecccccccccC Confidence 577777776533 223322 222222 22233 335555432 23333333333334444 No 78 >protein:vir:3870 Length: 400 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680487;swissprot:trembl:q8ltc0;genbank:gi:22296527;interpro:IPR006444;uniprot:Q8LTC0;genbank:GeneID:951713 Probab=97.46 E-value=2.5e-05 Score=45.85 Aligned_cols=276 Identities=8% Similarity=-0.010 Sum_probs=138.5 Q ss_pred CCccccHHHHHHHHHHHHHHH--------HhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeec Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLA--------KSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDV 72 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A--------~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~l 72 (341) ..+...+........+....+ ...++....-.+.|-+.....+++.+.+.+.+++.+++++|....|....+ T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~vP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 183 (400) T protein:vir:38 104 RNTDGVNFEKTDVGTFAVLRAVPTDASDAVNAGVKAADAASTIPETISNTPQRELQTVVDLKPFTNVFQASTQKGTYPTV 183 (400) T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcccccCCcccccHHHHHHHHHHHHhhhhhhhcceeEeccCcceEEEEE Confidence 000000000001111111111 111222333356666678899999999999999999999998777765544 Q ss_pred ccccccCCCCCC-Cccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcc Q lcl|Aclame:pro 73 GVSGLYTGRKAG-GRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNG 149 (341) Q Consensus 73 gv~g~iagrt~t-~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG 149 (341) ...++.++-... +..+ ..+.++...+.+++.--=+.|+-++|+ .+ .++|+..+.+.+.++++.=.-.-.++| T Consensus 184 ~~~~~~~~~~~E~~~~~~~~~~~f~~i~~~~~k~~~~~~is~ell~-ds----~~~~~~~i~~~l~~~~~~~~~~~i~~~ 258 (400) T protein:vir:38 184 ANATTKMVTVAELEKNPAMAKPEFKPVNWSVETYRQALPVSQESID-DS----AIDLVGLIAQNGQQIKVNTTNGAVATL 258 (400) T ss_pred ecCCCccccccccccccccccccceeeEeehhheeeehhhHHHHHh-hh----HHHHHHHHHHHHHHHHHHHHHHhhhhc Confidence 323222222211 1111 122334444444433323556555554 12 367888888888888776444444444 Q ss_pred ccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChH Q lcl|Aclame:pro 150 VSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSG 229 (341) Q Consensus 150 ~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~d 229 (341) +.... ..+.. +.|.+ .+++...+++.+. -+++|.+. T Consensus 259 ~~~~~------------------------------------~~~~~---~~~~~-~~~~~~~~~~~~~----a~~v~~~~ 294 (400) T protein:vir:38 259 LKGFT------------------------------------AKTIS---SVDDL-KHINNVDLDPAYS----RVIIASQS 294 (400) T ss_pred ccccc------------------------------------ccccc---cHHHH-HHHHHhhhhhhhC----cEEEEcHH Confidence 32110 01111 23322 3555556676542 48899988 Q ss_pred HHHHHHhHHHh-ccChhHHH-HHHHHHHHhhcCcccccCCcCCCCC-----EEEeccCCcEEEEecCcEEEEEEEccccc Q lcl|Aclame:pro 230 LIGAAQAKLYD-KADKPSEQ-IAAQKLDKTIAGRPAYVPPFLPDNA-----MVVTIPENLQVLTQHGTAQRKAKHESDRK 302 (341) Q Consensus 230 Lla~~~~~l~n-~~~~ptE~-~a~~~i~k~igGlpa~~vPffP~~~-----ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~ 302 (341) .+.. +..+. ....|-=. -.......++-|+|++..+.+|... +++=.|++..+.+-+....-++.++. T Consensus 295 ~~~~--l~~lkd~~G~~i~~~~~~~~~~~~l~G~pv~~~~~~~~~~~g~~~~~~gd~s~~~~~~~~~~~~~~~~~~~--- 369 (400) T protein:vir:38 295 FYNF--LDTVKDGNGRYLLQDSILTPSGKSVLGMPIAVVSDDTLGAAGEAHAFLGDIKRAILFANRADFMVRWVDDQ--- 369 (400) T ss_pred HHHH--HHHhhccCCCeeeecCcCCCCccccccceeEEecccccCCCCceEEEEEeccccEEEEeecceEEEEeccc--- Confidence 7653 44332 22222100 0000113479999999999999654 67778888655554443443333322 Q ss_pred ceeccccceeecc-ch--heeeeccccccCCcch Q lcl|Aclame:pro 303 RSKTHTGAWKVTQ-WV--CWKRSPLTTQKKSTSA 333 (341) Q Consensus 303 rve~y~s~YvVEd-yg--~~~~~~~~~~~~~~~a 333 (341) .|..+|++.- +| -.....|..++.++.| T Consensus 370 ---~~~~~~~~~~r~d~~~~~~~a~~~l~~~~~a 400 (400) T protein:vir:38 370 ---IYGQFLQAGMRFGVSVADEKAGYFLTYTPKA 400 (400) T ss_pred ---ccceeEEEEEEeccEEecccceEEEEeecCC Confidence 1223444433 23 3344456666666666 No 79 >protein:vir:9574 Length: 300 # NCBI annotation: gp40 # Family: family:all:966 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862879;genbank:gi:32469471;genbank:GeneID:1461316 Probab=97.45 E-value=2.7e-05 Score=45.59 Aligned_cols=283 Identities=10% Similarity=0.004 Sum_probs=151.4 Q ss_pred HHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCCC--ccccccCCCCcc Q lcl|Aclame:pro 20 LAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAGG--RFTKQVGVGGHK 97 (341) Q Consensus 20 ~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t~--r~~r~~~l~~~~ 97 (341) ||.. ..+...-|-|++...+++.+++.|.+++..+++++.--. ..+-.-.+++-++-...+ .....+.++... T Consensus 1 ma~~----t~~~G~lip~~~~~~ii~~l~~~s~i~~l~~~~~~~~~~-~~~p~~~~~~~a~wv~Eg~~~~~s~~~f~~v~ 75 (300) T protein:vir:95 1 MSEA----QLSKGNLFNPELVTKVINKVKGHSSIAKLSPQKPIPFNG-QREFVFDFDSDIDIVAENGKKTHGGVSLDPVT 75 (300) T ss_pred Cccc----ccCCcceechhhHHHHHHHHHhhhhhhhhcceeeccCCc-eEEEEEecCcceEEeeCCcccccccccceeeE Confidence 2211 112233588899999999999999999888888765422 223332333333332221 222335677788 Q ss_pred eEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHH Q lcl|Aclame:pro 98 YKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKN 177 (341) Q Consensus 98 Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re 177 (341) +.+++.--.+.|+.++|-++.. ..+++++.+.+.+.+.++.=.-.-.|+|+-...-+. ..|.. ..+ T Consensus 76 l~~~k~~~~~~iS~ell~~~~d--~~~~l~~~i~~~l~~aia~~~d~~~l~G~~~~~g~~--~~~~~-~~~--------- 141 (300) T protein:vir:95 76 IVPLKVEYGARVSDEFLHASEE--AKVDMLTDFVEGFSKKLARGLDIMSIHGINPRTKQA--STIIG-DNC--------- 141 (300) T ss_pred eeeEEEEEeehhhHHHhccCCC--CHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC--ccccc-ccc--------- Confidence 8888888888888888865543 257899999999999999888888889853211111 00000 000 Q ss_pred hhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHHhccChhHHHHHHH-HHHH Q lcl|Aclame:pro 178 RKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQ-KLDK 256 (341) Q Consensus 178 ~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~-~i~k 256 (341) .. .. ....+..+..-.|.+|..++.. ++..+++ +. +++|.+..... -..|-.....|-=..... .... T Consensus 142 ~~--~~-~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~-~~-~~vmn~~~~~~-L~~lkd~~G~~i~~~~~~~~~~~ 210 (300) T protein:vir:95 142 FD--KK-VTQTVPFKDTNPDESMEDAVGM-----IDGSERD-IT-GAILDPIFTTA-LSKMKNAEGGKLYPELAWGGVPD 210 (300) T ss_pred cc--cc-cceeecccccchHHHHHHHHHH-----hhhcCCC-cc-EEEECHHHHHH-HHHhhccCCCeeccCccccCCCc Confidence 00 00 0011111122235555544433 3333443 23 68888876542 222322222221000000 1136 Q ss_pred hhcCcccccCCcCCCCC------EEEeccCCcEEEEecCcEEEEEEEcccccc-eecc-cc---ceeeccc-h--heeee Q lcl|Aclame:pro 257 TIAGRPAYVPPFLPDNA------MVVTIPENLQVLTQHGTAQRKAKHESDRKR-SKTH-TG---AWKVTQW-V--CWKRS 322 (341) Q Consensus 257 ~igGlpa~~vPffP~~~------ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~r-ve~y-~s---~YvVEdy-g--~~~~~ 322 (341) ++-|+|++..+++|... +++-.++++-.|.-+....-++.+..+.+- -.+| +. +|.+|-+ | ..... T Consensus 211 ~l~G~Pv~~s~~v~~~~~~~~~~~~~GDf~~~~~~~~~~~~~~~v~~~~~~d~~~~~~f~~~~v~~r~~~r~d~~v~~~~ 290 (300) T protein:vir:95 211 AINGLAVDKNRTVSYSQTDPKNTAIVGDFETMFKWGYAKEVPMEIIKYGDPDNSGRDLKGYNQIYIRCEAYIGWGIMDAA 290 (300) T ss_pred eecceeeEEecCCCCCCCCCccEEEEeeccceEEEEEecccEEEEeeccCCCCcchhhhhcCcEEEEEEEeecceeeccc Confidence 79999999999999876 677788876655444444444443322221 1122 22 5555553 3 33344 Q ss_pred ccccccCCcc Q lcl|Aclame:pro 323 PLTTQKKSTS 332 (341) Q Consensus 323 ~~~~~~~~~~ 332 (341) .|..++.+.. T Consensus 291 a~~~l~~~~g 300 (300) T protein:vir:95 291 SFARIVKTGG 300 (300) T ss_pred ceEEEecCCC Confidence 4555555555 No 80 >protein:vir:80376 Length: 435 # NCBI annotation: gp6, major capsid head protein # Family: family:all:21 # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111085;genbank:gi:134288639;genbank:GeneID:4960624 Probab=97.45 E-value=5.8e-05 Score=43.80 Aligned_cols=302 Identities=10% Similarity=-0.012 Sum_probs=144.4 Q ss_pred CCccccHH-HHHHHHHHHHHHHHh------------------------hCchhhcceeecChHHHHHHHHHHHhhHHHhc Q lcl|Aclame:pro 1 MSQILTQS-AREYMDNFAQQLAKS------------------------YGVSNVAELFNVSPQLETKLRAAITESAEFLK 55 (341) Q Consensus 1 m~~~M~~~-tr~~~~~y~~~~A~~------------------------ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~ 55 (341) ....=..+ ....|..+...++.. +......-.+.|-....+.+.+.+++.+.+++ T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~lvP~~~~~~ii~~l~~~~~i~~ 164 (435) T protein:vir:80 85 YAQPKAPEVKGAKMARMVRALAAARGDAQLASKLAIERGFGEEVAMSLNTLSPGAGGVLVPENLSSEVIELLRPKSVVRK 164 (435) T ss_pred ccccchhhhhHHHHHHHHHHHHhccchhHHHHHHHHhhhhhhhhhhhhcccCCCCCccccchhHHHHHHHHHhhhchhhh Confidence 11000000 011122222222211 11111122344555667889999998887766 Q ss_pred c-cceecchhhccceeecccccccCCCCCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHH Q lcl|Aclame:pro 56 M-ITVTTVDQIEGQVVDVGVSGLYTGRKAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTE 132 (341) Q Consensus 56 ~-Inv~~V~~~~Ge~i~lgv~g~iagrt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~ 132 (341) . .++++...-. .++-.-.+++-++-...+ .....+.++...+..++.---+.|+.+.|+...- .|+++..+.+ T Consensus 165 ~~~~~v~~~~~~-~~~p~~~~~~~a~~v~E~~~~~~~~~~f~~i~~~~~k~~~~~~is~ell~ds~~---~~~l~~~i~~ 240 (435) T protein:vir:80 165 LGARTLPLSNGN-ITIPRLKGGAIVGYIGADTDIPTTQQQFDDLKLTAKKMAALVPIANDLIKYAGV---NPNVDQIVVG 240 (435) T ss_pred ccceeeecCCCc-eEEEEEeCCcceeeeccCccccccccceeeEEEeeEEEEEeehhhHHHHHhhcc---cHHHHHHHHH Confidence 4 3455443221 222222223333322221 1122345677778888877778888888777653 4789999999 Q ss_pred HHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhccc Q lcl|Aclame:pro 133 FSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQI 212 (341) Q Consensus 133 ~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li 212 (341) .+.++++.-.-.--+||+-.+. .| +|++... .....+....+.+...+++.+.+++..+. T Consensus 241 ~l~~a~~~~~d~a~l~G~G~~~------~p------~Gi~~~~--------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 300 (435) T protein:vir:80 241 DLTAAIGAREDKAFIRDDGTAN------TP------KGLRFWA--------LPGNVITASDGSTLQKIETDLGKAILALE 300 (435) T ss_pred HHHHHHHHHHHHHhhccCCCCC------cc------cceeecc--------cccceeecccccchhhHHHHHHHHHHHhh Confidence 9999999887777788843211 13 2443311 01111222233333333333444443332 Q ss_pred chhhccCCCeEEEeChHHHHHHHhHHHh-ccChhHHHHHHHHHHHhhcCcccccCCcCCCC--------CEEEeccCCcE Q lcl|Aclame:pro 213 HPMFRNDPRLTVFVGSGLIGAAQAKLYD-KADKPSEQIAAQKLDKTIAGRPAYVPPFLPDN--------AMVVTIPENLQ 283 (341) Q Consensus 213 ~~~~r~~~dLVvivG~dLla~~~~~l~n-~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~--------~ilVT~l~NLs 283 (341) .. .......+++|.+.... ++..+. ....|-= -+.-..++-|+|++..+++|.+ .+++..+++.- T Consensus 301 ~~-~~~~~~~~~vmn~~~~~--~L~~lkd~~G~~l~---~~~~~~~l~G~pv~~~~~~p~~~~~~~~~~~i~~gd~s~~~ 374 (435) T protein:vir:80 301 NA-DANLTQPGWIMAPRTFR--FLEGLRDGNGNKVY---PELANGMLKGYPVGKTTQVPINLGEAGKESEIYFTDFGDVF 374 (435) T ss_pred cc-ccccccCEEEEcHHHHH--HHHhhhccCCceec---cCCCCCeEeeeeeEEeccccccccCCCCcceEEEEEcccEE Confidence 21 11223568899988764 333332 2112210 0011357999999999999985 57888888755 Q ss_pred EEEecCcEEEEEEEcccc-c----ceecc--cc-ceeeccc-hh--eeeeccccccCC-cch Q lcl|Aclame:pro 284 VLTQHGTAQRKAKHESDR-K----RSKTH--TG-AWKVTQW-VC--WKRSPLTTQKKS-TSA 333 (341) Q Consensus 284 IY~Q~gs~RR~~~d~~~r-~----rve~y--~s-~YvVEdy-g~--~~~~~~~~~~~~-~~a 333 (341) |. .++..+=.+.++... + -+-.| +. ++.+|.+ ++ .....|...... =+| T Consensus 375 i~-~~~~~~i~~~~~~~~~~~~~~~~~~f~~n~~~~r~~~r~d~~~~~~~a~~~l~~~~~~~ 435 (435) T protein:vir:80 375 IG-EEETLEIDYSKEATYKDADGHMVSAFQRDQTLIRVIAKNDFGPRHVESIAVLSGVAWGA 435 (435) T ss_pred EE-eecceEEEEeccccccccccchhhhhhcCcceeeeeeeeCcEeecccceEEEeccCCCC Confidence 43 344444333333211 1 11112 12 5555543 32 222223222111 222 No 81 >protein:vir:80684 Length: 315 # NCBI annotation: gp6 # Family: family:all:966 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285582;genbank:gi:148727088;genbank:GeneID:5247055 Probab=97.43 E-value=5.1e-05 Score=44.09 Aligned_cols=285 Identities=10% Similarity=-0.003 Sum_probs=143.6 Q ss_pred HHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCCC--ccccccCCCCcc Q lcl|Aclame:pro 20 LAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAGG--RFTKQVGVGGHK 97 (341) Q Consensus 20 ~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t~--r~~r~~~l~~~~ 97 (341) || .+. ..+-.+.|-+...+.+++.++++|.++++.+++++.-- +-++-.-.+++-++-...+ .....+.++..+ T Consensus 1 Ma--~~~-~~~gg~~vP~~~~~~ii~~l~~~s~i~~l~~~i~~~~~-~~~ip~~~~~~~a~wv~Eg~~~~~s~~~f~~v~ 76 (315) T protein:vir:80 1 MA--DDF-LSAGKLELPGSMIGAVRDRAIDSGVLAKLSPEQPTIFG-PVKGAVFSGVPRAKIVGEGEVKPSASVDVSAFT 76 (315) T ss_pred CC--CCc-CCcCceEcchHHHHHHHHHHHhhchhhhhcceeecCCC-ceEEEEEeCCcceEEeeCCccccccccceeeeE Confidence 22 112 22456789999999999999999999999999887532 1233333334444433322 122234667777 Q ss_pred eEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHH Q lcl|Aclame:pro 98 YKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKN 177 (341) Q Consensus 98 Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re 177 (341) ..+++.-.-+.|+-+++...... ....+++.+.+.+.+.++.=.-.-.|||+.-...+.+. + +. . T Consensus 77 l~~~kl~~~~~iS~ell~~s~~~-~~~~l~~~i~~~la~ai~~~~d~a~~~G~~~~~~~~~~----~-------~~---~ 141 (315) T protein:vir:80 77 AQPIKVVTQQRVSDEFMWADADY-RLGVLQDLISPALGASIGRAVDLIAFHGIDPATGKAAS----A-------VH---T 141 (315) T ss_pred eeeeeEEeeehhhHHHhhcCchh-HHHHHHHHHHHHHHHHHHHHHhhheeeccCCCCCcccc----c-------cc---c Confidence 77777666666666655332210 02236677888888888877777788996422111111 0 00 0 Q ss_pred hhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHHhccChhHH--HH---HHH Q lcl|Aclame:pro 178 RKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYDKADKPSE--QI---AAQ 252 (341) Q Consensus 178 ~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~n~~~~ptE--~~---a~~ 252 (341) ...........++..|.+++.++.- + ....++. +. +++|.+.....- .+|.....+|+- .+ ..+ T Consensus 142 ----~~~~~~~~~~~~~~~~~d~~~~~~~-~---~~~~~~~-~~-~~imn~~~~~~L-~~l~~~~g~~~~g~~~~~~~~~ 210 (315) T protein:vir:80 142 ----SLNKTKNIVDATDSATADLVKAVGL-I---AGAGLQV-PN-GVALDPAFSFAL-STEVYPKGSPLAGQPMYPAAGF 210 (315) T ss_pred ----ccccccceeeccccchHHHHHHHHH-H---hhccCcc-ce-EEEEcHHHHHHH-HHHhhccCCccccccccccccc Confidence 0000111122334457777766533 2 2222221 22 688988765531 223222112210 00 001 Q ss_pred HHHHhhcCcccccCCcCCCCC---------EEEeccCCcEEEEecCcEEEEEEEcccccce-ec-ccc-----------c Q lcl|Aclame:pro 253 KLDKTIAGRPAYVPPFLPDNA---------MVVTIPENLQVLTQHGTAQRKAKHESDRKRS-KT-HTG-----------A 310 (341) Q Consensus 253 ~i~k~igGlpa~~vPffP~~~---------ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rv-e~-y~s-----------~ 310 (341) .-..++-|+|++..+++|++. +++-.++++-|-..++ .+-.+-+..+-+.. .+ ++. + T Consensus 211 g~~~tl~G~PV~~~~~~~~~~~~~~~~~~~~~~GDfs~~~~g~~~~-~~i~i~~~~~~~~~~~~~~~~~~v~~r~~~r~~ 289 (315) T protein:vir:80 211 AGLDNWRGLNVGASSTVSGAPEMSPASGVKAIVGDFSRVHWGFQRN-FPIELIEYGDPDQTGRDLKGHNEVMVRAEAVLY 289 (315) T ss_pred CCCceecceeeEecCcCCcccccccccccEEEEeecccEEEEEecC-eeEEEeccccccCcccchhhcCcEEEEEEEEec Confidence 112479999999999999764 4556777755533332 23222222211111 01 111 3 Q ss_pred eeeccchheeeecccc-ccCCcchhc Q lcl|Aclame:pro 311 WKVTQWVCWKRSPLTT-QKKSTSALN 335 (341) Q Consensus 311 YvVEdyg~~~~~~~~~-~~~~~~a~~ 335 (341) +.|.+-.+|.-..... .+..+||-| T Consensus 290 ~~v~~~~a~~~l~~~~a~~~~~~~~~ 315 (315) T protein:vir:80 290 VAIESLDSFAVVKEKAAPKPNPPAEN 315 (315) T ss_pred ceeecccceEEEeeccCCCCCCCCCC Confidence 3344444444443333 333356666 No 82 >protein:vir:9361 Length: 402 # NCBI annotation: SLT orf 37-like protein # Family: family:all:658 # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803339;genbank:gi:29028650;genbank:GeneID:1258088 Probab=97.40 E-value=4.6e-05 Score=44.36 Aligned_cols=281 Identities=9% Similarity=0.007 Sum_probs=136.0 Q ss_pred CCccccHHHHHHHHHHHHHHHH--------------hh--Cc-hhhcceeecChHHHHHHHHHHHhhHHHhcccceecch Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAK--------------SY--GV-SNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVD 63 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~--------------~n--gv-~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~ 63 (341) -+..+.......+..|+..... .+ .. .+..-.+.|-+.+...+++.+.+.+.+++.+++++|. T Consensus 94 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a~~~~t~~~GG~lIP~~~~~~Ii~~~~~~~~l~~~~~v~~~~ 173 (402) T protein:vir:93 94 QSLSDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLSKEIVSEPFAKNQLREKARLTNIK 173 (402) T ss_pred CCCchhHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHhhhccCCCcCCccccchhHHHHHHHhHHhhhhhhhhceeeecC Confidence 1111222222223333222110 00 10 1112356787778899999999999999999999987 Q ss_pred hhccceeecccccccCCCCCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 64 QIEGQVVDVGVSGLYTGRKAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALD 141 (341) Q Consensus 64 ~~~Ge~i~lgv~g~iagrt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD 141 (341) ..++-++.. ++.-++-...+ .....+.++...|..++.---+.|+.++|+-.+ ++|+..+.+.++++++.= T Consensus 174 ~~~~p~~~~--~~~~a~~v~Eg~~~~~~~~~f~~i~~~~~k~~~~i~iS~ell~Ds~-----~~l~~~i~~~la~~~~~~ 246 (402) T protein:vir:93 174 GLEIPRVSY--TLDDDDFITDVETAKELKAKGDTVKFTTNKFKVFAAISDTVIHGSD-----VDLVNWVENALQSGLAAK 246 (402) T ss_pred Cceeeeeec--cCCccccccccccccccccccceeeecceeeeeechhhHHHHhhhH-----HHHHHHHHHHHHHHHHHH Confidence 655444332 22222222111 111123444455555554444778878777554 689999999999988762 Q ss_pred HHHHhh-ccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCC Q lcl|Aclame:pro 142 IMRIGW-NGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDP 220 (341) Q Consensus 142 ~i~IGf-nG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~ 220 (341) ..-.-| +| +....| .|++ ....+..-++.+ ..|.| .+++.+ |++.|+.. T Consensus 247 e~~~~~~~g-------~g~g~p------~g~~------------~~~~~~~~~~~~--~~d~l-~~~~~~-l~~~y~~n- 296 (402) T protein:vir:93 247 ERKDALAVS-------PKSGLE------HMSF------------YNGSVKEVEGAD--MYDAI-INALAD-LHEDYRDN- 296 (402) T ss_pred HHHhHhhcC-------CCcccc------ceee------------eccccccccccc--hHHHH-HHHHhc-cChhhhcC- Confidence 111222 22 222222 2222 111111112221 13543 355655 57777764 Q ss_pred CeEEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccc Q lcl|Aclame:pro 221 RLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESD 300 (341) Q Consensus 221 dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~ 300 (341) -+|+|.+.-+.. ..+++...+.+- .+ .-..++-|+|++....+|. +++=. +|.||.. +++... ++. T Consensus 297 -a~~imn~~t~~~-~~~~~~d~~~~~--~~--~~~~~llG~PV~~t~~~~~--i~~GD---f~~~~~~--~~~~~~-~~~ 362 (402) T protein:vir:93 297 -ATIYMRYADYVK-IISVLSNGTTNF--FD--TPAEKVFGKPVVFTDAAVK--PIVGD---FNYFGIN--YDGTTY-DTD 362 (402) T ss_pred -CEEEEechHHHH-HHHHHhcCCCcc--cc--cCCccccccceEEecCCCc--eeeec---hhhhhhh--hhhhhh-hhh Confidence 367776543221 233443333221 00 0124688999999999875 55544 4545431 222221 122 Q ss_pred ccceeccccceee--------ccchheeeeccccccCCcch Q lcl|Aclame:pro 301 RKRSKTHTGAWKV--------TQWVCWKRSPLTTQKKSTSA 333 (341) Q Consensus 301 r~rve~y~s~YvV--------Edyg~~~~~~~~~~~~~~~a 333 (341) ++... -+-+|+. -|-.+|....++....|+|+ T Consensus 363 ~~~~~-~~~~~~~~~r~Dg~v~~~~A~~~l~ik~~~~~~~~ 402 (402) T protein:vir:93 363 KDVKK-GEYLFVLTAWYDQQRTLDSAFRIAKAKENTGPLPS 402 (402) T ss_pred hcccC-CceEEEEEEEeCcEEechhheEEEEeecCCCCCCC Confidence 22111 0113333 22334555556666667777 No 83 >protein:vir:1268 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:21 # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690760;genbank:gi:22855000;genbank:GeneID:955203 Probab=97.34 E-value=3.9e-05 Score=44.76 Aligned_cols=279 Identities=10% Similarity=0.108 Sum_probs=145.8 Q ss_pred CCccccHHHHHHHHHHHHHHH------------------HhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLA------------------KSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTV 62 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A------------------~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V 62 (341) ........+...++++...+- ...+....+-.+.|-++....+++.+.+.+.+++.++++++ T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~gg~lvP~~~~~~ii~~~~~~~~l~~~~~~~~~ 162 (397) T protein:vir:12 83 QGQGNEERQQQYSKAFLKGLRGKRLTDEERDLLDSPEFRAMSGINDEDGGILIPEDIGRQIHEFKRQFEPLEQYVTVEPV 162 (397) T ss_pred ccchhhHHHHHHHHHHHHHHhccCCcHHHHHHHhhhhhhhccccccccCcccCchhHHHHHHHhhhhhhhHHhhcceeec Confidence 111122222222222222111 01111222344667667778899999999999999999999 Q ss_pred hhhccceee-cccccccCCCCCCC-cccc--ccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHH Q lcl|Aclame:pro 63 DQIEGQVVD-VGVSGLYTGRKAGG-RFTK--QVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMF 138 (341) Q Consensus 63 ~~~~Ge~i~-lgv~g~iagrt~t~-r~~r--~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~ 138 (341) +...|+..- ...+++.+.-...+ ..+. ...++...+.+++.---+.|+.+.|+.-. .+|++.+.+.+.+++ T Consensus 163 ~~~~~~~~~~~~~~~~~a~~v~Eg~~~~~~~~~~~~~v~~~~~k~~~~~~is~e~l~ds~-----~~l~~~i~~~l~~~~ 237 (397) T protein:vir:12 163 TTRSGTRLLEKNADMVPFSPVEELGNLPEIDQPRFTKVSYSIIDYGGIMTLSNSMLNDSD-----QAIMTYVAKWFAKKS 237 (397) T ss_pred cCCceeEEEEEecCCcceeeecccccccccccccceeEEeeheeeEeeehhhHHHHhhch-----HHHHHHHHHHHHHHH Confidence 988887533 33334333333222 2221 23456666777666656777777665322 578999999999998 Q ss_pred hhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhcc Q lcl|Aclame:pro 139 ALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRN 218 (341) Q Consensus 139 alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~ 218 (341) +.-.-.--++|+.... | .-+ .+.|.+ .+++...+++.++. T Consensus 238 ~~~~d~~il~G~g~~~-------~------------------~g~--------------~~~~~i-~~~~~~~l~~~~~~ 277 (397) T protein:vir:12 238 VVTRNNLILAAIASLK-------K------------------VDI--------------DGLDGI-KKALNVTLDPMVAP 277 (397) T ss_pred HHHHHHHHHhcccccc-------c------------------ccc--------------ccHHHH-HHHHhhccchhhhC Confidence 8777667777753211 1 000 124443 33444456888775 Q ss_pred CCCeEEEeChHHHHHHHhHHH-hccChhH---HHHHHHHHHHhhcCcccccCCc-CCCCC-----EEEeccCCcE-EEEe Q lcl|Aclame:pro 219 DPRLTVFVGSGLIGAAQAKLY-DKADKPS---EQIAAQKLDKTIAGRPAYVPPF-LPDNA-----MVVTIPENLQ-VLTQ 287 (341) Q Consensus 219 ~~dLVvivG~dLla~~~~~l~-n~~~~pt---E~~a~~~i~k~igGlpa~~vPf-fP~~~-----ilVT~l~NLs-IY~Q 287 (341) ..+++|.+...+ .+..+ +....|- +. ......++-|+|++..+. +|+.+ +++-.+++.- ++.+ T Consensus 278 --~a~~~~n~~~~~--~L~~lkd~~G~~l~~~~~--~~g~~~~l~G~pv~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 351 (397) T protein:vir:12 278 --GSIVLTNQDGYD--WLDTLKDGTGRYLLQPDP--TNPTKKLLDGRPVVPFTNRVLKTQKGKAPLIIGNLKEAIVLFDR 351 (397) T ss_pred --CCEEEEcHHHHH--HHHHhhccCCceeecccc--cCCCCccccceeeEEecccccccCCCccEEEEEehhceEEEEee Confidence 468899998765 34333 2222220 00 011135788999987665 44332 7888888854 4434 Q ss_pred cCcEEEEEEEcccccceeccccceeeccc-h--heeeeccccccCCcc Q lcl|Aclame:pro 288 HGTAQRKAKHESDRKRSKTHTGAWKVTQW-V--CWKRSPLTTQKKSTS 332 (341) Q Consensus 288 ~gs~RR~~~d~~~r~rve~y~s~YvVEdy-g--~~~~~~~~~~~~~~~ 332 (341) .+ ..-.+.+.+ .+.++.+.-+|.++-| + ......|..++.+.. T Consensus 352 ~~-~~i~~~~~~-~~~f~~~~~~~r~~~r~d~~~~~~~a~~~~~~t~~ 397 (397) T protein:vir:12 352 EQ-QSIASTDTG-AGAFETNSTKVRGIEREDVRKWDEDAVVFGQITVE 397 (397) T ss_pred cc-eEEEEeccc-cchhhcCceEEEEEEeeccEEecccceEEEEEeeC Confidence 33 222222222 2222222225555543 2 222223333333322 No 84 >protein:vir:9509 Length: 381 # NCBI annotation: hypothetical protein # Family: family:all:635 # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835556;genbank:gi:30043951;genbank:GeneID:1260537 Probab=97.34 E-value=5e-05 Score=44.18 Aligned_cols=295 Identities=9% Similarity=-0.013 Sum_probs=147.3 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) ....++.+-|+.|+++.. +. +..-.|-|-++..+++++.+.+.|.+++.++++++.- +.++-...+++.++ T Consensus 61 ~~~~lt~~e~~~~~~~~~------~~-~~~gg~lvP~~~~~~I~~~l~~~s~i~~~~~v~~~~~--~~~i~~~~~~~~a~ 131 (381) T protein:vir:95 61 SAQSLSANQRSFFMDINK------NV-NYKEEKLLPEETIDRIFEDLTTNHPLLADLGIKNAGL--RLKFLKSETSGVAV 131 (381) T ss_pred CcccccHHHHHHHHHHhc------cc-CCCCceecCHHHHHHHHHHHHhhccceeheeeEecCc--ceEEEEecCCccee Confidence 222344455555544322 11 1233578999999999999999999999999988752 23444433444333 Q ss_pred CCCC-C-c-cccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 81 RKAG-G-R-FTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 81 rt~t-~-r-~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) =..- + + ....+.+....+.+++.---+.|+.++|+.= ..+++..+++.+.+++|.=.-.--+||+- T Consensus 132 w~~e~~~~~~~~~~~f~~i~l~~~kl~~~~~is~elL~Ds-----~~~ie~~i~~~la~~~a~~~~~a~i~G~G------ 200 (381) T protein:vir:95 132 WGKIYGEIKGQLDAAFSEETAIQNKLTAFVVLPKDLNDFG-----PAWIERFVRVQIEEAFAVALETAFLKGTG------ 200 (381) T ss_pred eecccccccccccccceeeeecceeEEeechhhHHHhhcC-----HHHHHHHHHHHHHHHHHHHhhheeEeccC------ Confidence 2111 1 1 1222344555555555555588888888752 24788899999999988766555567733 Q ss_pred hhhccchhhhhhhHHHHHHHhhccccccccc----eeec------CCchhhhHHHHHHHHHhcccchhhc-----cCCCe Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDVDV----YFDE------TNGDYRTLDAMASDIINNQIHPMFR-----NDPRL 222 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~~~----~~~g------~ggdy~nLDalv~d~~~~li~~~~r-----~~~dL 222 (341) +..| +|+|..+-. ....++++ +..+ ....|..|.+++..+ ..|+. -.... T Consensus 201 -~~qP------~Gil~~~~~---~~~~~~g~~~~~~~~~t~t~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~a 265 (381) T protein:vir:95 201 -KDQP------IGLNRQVQK---GVSVTEGAYPEKEEQGTLTFANPRATVNELTQVFKYH-----STNEKGKSVAVKGNV 265 (381) T ss_pred -CCCc------eeeeeccCc---ccccccccccccccccccccccchhhHHHHHHHHHhh-----ccccccccccccCce Confidence 1223 344431111 00111111 1111 111233444444433 23322 23567 Q ss_pred EEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccccc Q lcl|Aclame:pro 223 TVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRK 302 (341) Q Consensus 223 VvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~ 302 (341) +++|.+.-... ..++....+.. ++-+...-.|.+++.-++||++.+++-.+++--|.-..| .+-...+ +.- T Consensus 266 ~~~mn~~t~~~-l~~~~~~~~~~-----G~~v~~l~~g~~vv~s~~~p~~~iifgDfs~Y~i~~r~~-~~i~~~~--~~~ 336 (381) T protein:vir:95 266 TMVVNPSDAFE-VQAQYTHLNAN-----GVYVTALPFNLNVIESTVQEAGKVLTYVKGLYDGYLAGG-INVQKFK--ETL 336 (381) T ss_pred EEEEccccHHh-hccccccCCCC-----CceeecCCCCceEEecCCCCcCcEEEEecccEEEEEecc-cEEEeec--hhH Confidence 89999864432 22222111100 110111112566788899999999999998866654433 3322211 111 Q ss_pred ceeccccceeeccc--h------heeeeccccccCCcchhcccccCC Q lcl|Aclame:pro 303 RSKTHTGAWKVTQW--V------CWKRSPLTTQKKSTSALNHRSERN 341 (341) Q Consensus 303 rve~y~s~YvVEdy--g------~~~~~~~~~~~~~~~a~~~~~~~~ 341 (341) -.++ +-+|.+--+ | +|...++++ +..++++..+++-- T Consensus 337 ~~~d-~~~f~a~~r~dg~~~~~~A~~v~~l~~-~~~~~~~~~~~~~~ 381 (381) T protein:vir:95 337 ALDD-MDLYTAKQFAYGKAKDNKVAAVWKLDL-KGHKPALEGTEETL 381 (381) T ss_pred hhcC-CeEEEEEEEEcCEEecCceEEEEEEEe-cCCCcCcccccccC Confidence 0000 114443332 2 333334333 34556665554444 No 85 >protein:vir:101291 Length: 381 # NCBI annotation: hypothetical protein # Family: family:all:635 # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908831;genbank:gi:118725095;genbank:GeneID:4555862 Probab=97.34 E-value=5e-05 Score=44.18 Aligned_cols=295 Identities=9% Similarity=-0.013 Sum_probs=147.3 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) ....++.+-|+.|+++.. +. +..-.|-|-++..+++++.+.+.|.+++.++++++.- +.++-...+++.++ T Consensus 61 ~~~~lt~~e~~~~~~~~~------~~-~~~gg~lvP~~~~~~I~~~l~~~s~i~~~~~v~~~~~--~~~i~~~~~~~~a~ 131 (381) T protein:vir:10 61 SAQSLSANQRSFFMDINK------NV-NYKEEKLLPEETIDRIFEDLTTNHPLLADLGIKNAGL--RLKFLKSETSGVAV 131 (381) T ss_pred CcccccHHHHHHHHHHhc------cc-CCCCceecCHHHHHHHHHHHHhhccceeheeeEecCc--ceEEEEecCCccee Confidence 222344455555544322 11 1233578999999999999999999999999988752 23444433444333 Q ss_pred CCCC-C-c-cccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 81 RKAG-G-R-FTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 81 rt~t-~-r-~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) =..- + + ....+.+....+.+++.---+.|+.++|+.= ..+++..+++.+.+++|.=.-.--+||+- T Consensus 132 w~~e~~~~~~~~~~~f~~i~l~~~kl~~~~~is~elL~Ds-----~~~ie~~i~~~la~~~a~~~~~a~i~G~G------ 200 (381) T protein:vir:10 132 WGKIYGEIKGQLDAAFSEETAIQNKLTAFVVLPKDLNDFG-----PAWIERFVRVQIEEAFAVALETAFLKGTG------ 200 (381) T ss_pred eecccccccccccccceeeeecceeEEeechhhHHHhhcC-----HHHHHHHHHHHHHHHHHHHhhheeEeccC------ Confidence 2111 1 1 1222344555555555555588888888752 24788899999999988766555567733 Q ss_pred hhhccchhhhhhhHHHHHHHhhccccccccc----eeec------CCchhhhHHHHHHHHHhcccchhhc-----cCCCe Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDVDV----YFDE------TNGDYRTLDAMASDIINNQIHPMFR-----NDPRL 222 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~~~----~~~g------~ggdy~nLDalv~d~~~~li~~~~r-----~~~dL 222 (341) +..| +|+|..+-. ....++++ +..+ ....|..|.+++..+ ..|+. -.... T Consensus 201 -~~qP------~Gil~~~~~---~~~~~~g~~~~~~~~~t~t~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~a 265 (381) T protein:vir:10 201 -KDQP------IGLNRQVQK---GVSVTEGAYPEKEEQGTLTFANPRATVNELTQVFKYH-----STNEKGKSVAVKGNV 265 (381) T ss_pred -CCCc------eeeeeccCc---ccccccccccccccccccccccchhhHHHHHHHHHhh-----ccccccccccccCce Confidence 1223 344431111 00111111 1111 111233444444433 23322 23567 Q ss_pred EEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccccc Q lcl|Aclame:pro 223 TVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRK 302 (341) Q Consensus 223 VvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~ 302 (341) +++|.+.-... ..++....+.. ++-+...-.|.+++.-++||++.+++-.+++--|.-..| .+-...+ +.- T Consensus 266 ~~~mn~~t~~~-l~~~~~~~~~~-----G~~v~~l~~g~~vv~s~~~p~~~iifgDfs~Y~i~~r~~-~~i~~~~--~~~ 336 (381) T protein:vir:10 266 TMVVNPSDAFE-VQAQYTHLNAN-----GVYVTALPFNLNVIESTVQEAGKVLTYVKGLYDGYLAGG-INVQKFK--ETL 336 (381) T ss_pred EEEEccccHHh-hccccccCCCC-----CceeecCCCCceEEecCCCCcCcEEEEecccEEEEEecc-cEEEeec--hhH Confidence 89999864432 22222111100 110111112566788899999999999998866654433 3322211 111 Q ss_pred ceeccccceeeccc--h------heeeeccccccCCcchhcccccCC Q lcl|Aclame:pro 303 RSKTHTGAWKVTQW--V------CWKRSPLTTQKKSTSALNHRSERN 341 (341) Q Consensus 303 rve~y~s~YvVEdy--g------~~~~~~~~~~~~~~~a~~~~~~~~ 341 (341) -.++ +-+|.+--+ | +|...++++ +..++++..+++-- T Consensus 337 ~~~d-~~~f~a~~r~dg~~~~~~A~~v~~l~~-~~~~~~~~~~~~~~ 381 (381) T protein:vir:10 337 ALDD-MDLYTAKQFAYGKAKDNKVAAVWKLDL-KGHKPALEGTEETL 381 (381) T ss_pred hhcC-CeEEEEEEEEcCEEecCceEEEEEEEe-cCCCcCcccccccC Confidence 0000 114443332 2 333334333 34556665554444 No 86 >protein:vir:96223 Length: 324 # NCBI annotation: ORF011 # Family: family:all:507 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239571;genbank:gi:66395304;genbank:GeneID:5132771 Probab=97.32 E-value=9.7e-05 Score=42.59 Aligned_cols=299 Identities=8% Similarity=-0.052 Sum_probs=153.4 Q ss_pred CCcccc--HHHHHHHHHHHHHHHHhhC--ch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc Q lcl|Aclame:pro 1 MSQILT--QSAREYMDNFAQQLAKSYG--VS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS 75 (341) Q Consensus 1 m~~~M~--~~tr~~~~~y~~~~A~~ng--v~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~ 75 (341) |.. |+ +...+.|..+....+..+- +. .......|-+.+...+.+.+++.|.+++.++++++.-... ++-.=.+ T Consensus 1 ~~~-~~~~~~~~~~f~~~~~~~~~~~a~~~~~~~~~~~lip~~~~~~ii~~~~~~s~l~~l~~~~~~~~~~~-~~p~~~~ 78 (324) T protein:vir:96 1 MEQ-TQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLLNDFTTPILQEVMENSKIMQLGKYEPMEGTEK-KFTFWAD 78 (324) T ss_pred CCc-chhhhHHHHHHHHhhhhhhhcccccccccCCCcceechhHHHHHHHHHHhhchhhhhcceeeccCCce-EEEEEec Confidence 553 33 2344455555544443322 21 1223445778889999999999999999999998764221 2222112 Q ss_pred cccCCCCCC-C-ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcccccc Q lcl|Aclame:pro 76 GLYTGRKAG-G-RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAE 153 (341) Q Consensus 76 g~iagrt~t-~-r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A 153 (341) ++.+.-... + .....+.++...+..++.--.+.|+.+.|+... ++|...+.+.+.++++.-.-.--|+|.-. T Consensus 79 ~~~a~~v~Eg~~~~~~~~~f~~v~~~~~k~~~~~~is~ell~ds~-----~~l~~~i~~~l~~aia~~~d~~~l~G~g~- 152 (324) T protein:vir:96 79 KPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTY-----SQFFEEMKPMIAEAFYKKFDEAGILNQGN- 152 (324) T ss_pred CcceeeecCCccccccccceeEEEEEeEEEEEeehhhHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHhhhcCCC- Confidence 233322211 1 112234667777888887777888888887654 68999999999999888777777888431 Q ss_pred ccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHH Q lcl|Aclame:pro 154 ADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGA 233 (341) Q Consensus 154 ~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~ 233 (341) ... |. |=+ .....+.....+.-.|.+|..+ +.. |++.+.+. + +++|.+..++. T Consensus 153 -~~~----~~------~~~---------~~~~~~~~~~~~~~~~~~i~~~----~~~-i~~~~~~~-~-~~i~n~~~~~~ 205 (324) T protein:vir:96 153 -NPF----GK------SIA---------QSIKKTNKVIKGDFTQDNIIDL----EAL-LEDDELEA-N-AFISKTQNRSL 205 (324) T ss_pred -CCc----Cc------ccc---------ccccccceecccccchHHHHHH----HHh-hhhccCCC-C-EEEEcHHHHHH Confidence 111 11 000 0011111222233446555443 333 34444432 2 67888877652 Q ss_pred HHhHHH-hccChhHHHHHHHHHHHhhcCcccccCCcCCCC--CEEEeccCCcEEEEecCcEEEEEEEcccc--------c Q lcl|Aclame:pro 234 AQAKLY-DKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDN--AMVVTIPENLQVLTQHGTAQRKAKHESDR--------K 302 (341) Q Consensus 234 ~~~~l~-n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~--~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r--------~ 302 (341) ++.+ .....|-- ......++-|+|++..|..+.+ .+++-.++++-|- ..+..+-.+.++... . T Consensus 206 --L~~lkd~~G~~~~---~~~~~~~l~G~PV~~~~~~~~~~~~~~~gd~s~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 279 (324) T protein:vir:96 206 --LRKIVDPETKERI---YDRNSDSLDGLPVVNLKSSNLKRGELITGDFDKLIYG-IPQLIEYKIDETAQLSTVKNEDGT 279 (324) T ss_pred --HHHhhCCCCCeee---cCCCCCcccceeeEeecCCCCCcceEEEEecceEEEE-EecCcEEEEeeccccccccccccc Confidence 3323 22212210 0011357899999887765544 5888999987543 344444444443221 1 Q ss_pred ceecc--cc-ceeeccc-hhe--eeeccccccCCcchhcc-cccC Q lcl|Aclame:pro 303 RSKTH--TG-AWKVTQW-VCW--KRSPLTTQKKSTSALNH-RSER 340 (341) Q Consensus 303 rve~y--~s-~YvVEdy-g~~--~~~~~~~~~~~~~a~~~-~~~~ 340 (341) .+--| +. ++.+|-| |+. ....|..++.+++.... -+|- T Consensus 280 ~~~~~~~n~v~~r~~~r~d~~v~~~~a~~~l~~a~~~~~~~~~~~ 324 (324) T protein:vir:96 280 PVNLFEQDMVALRATMHVALHIADDKAFAKLVPADKRTDSVPGEV 324 (324) T ss_pred chhhhhcCcEEEEEEEEeccEEecccceEEEecccccCCCCCCCC Confidence 11112 12 4444443 322 22223333333222111 1111 No 87 >protein:vir:8187 Length: 311 # NCBI annotation: gp7 # Family: family:all:966 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817980;genbank:gi:29566414;genbank:GeneID:2700968 Probab=97.29 E-value=3.3e-05 Score=45.15 Aligned_cols=282 Identities=10% Similarity=0.009 Sum_probs=148.2 Q ss_pred HHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCCC--ccccccCCCCcc Q lcl|Aclame:pro 20 LAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAGG--RFTKQVGVGGHK 97 (341) Q Consensus 20 ~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t~--r~~r~~~l~~~~ 97 (341) || +-+ +-.|.|-++..+.+++.++++|..+++.+++++.--. .++-.-.+++-++-...+ .....+.++..+ T Consensus 1 ma----t~~-~gg~lvP~~~~~~ii~~~~~~s~i~~~~~~i~~~~~~-~~~p~~~~~~~a~wv~Eg~~~~~~~~~f~~v~ 74 (311) T protein:vir:81 1 MV----ALA-TGTFQLPKHLVPGVWQKAQGQSVLARLSMAEPQEFGE-QQYMTLTAPPRGEVVGEGAQKSESTATFAPVT 74 (311) T ss_pred Cc----eec-CCceEcchhHHHHHHHHHHhcchhhhhcceeecCCCc-eEEEEEeCCceeEEeecCcccccccceeeEEE Confidence 11 111 2356788888999999999999999999998864321 222222234333332221 122234677778 Q ss_pred eEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHH Q lcl|Aclame:pro 98 YKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKN 177 (341) Q Consensus 98 Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re 177 (341) +.+++.--.+.|+-+.|..+... ..+|++.+.+.++++++.-.-.-.+||+.....+.+. |.+. T Consensus 75 l~~~kl~~~~~iS~ell~~~~d~--~~~l~~~i~~~la~ai~~~~d~a~l~G~~~~~~~~~~----------gi~~---- 138 (311) T protein:vir:81 75 AIPRKVQVTQRFSQEVKWADESR--QLGVLQTMADLSGVALGRALDLIGIHGINPLTGAALS----------GSPA---- 138 (311) T ss_pred EeeEEEEEeehhhHHHhhcCccc--HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccc----------cccc---- Confidence 88888777788888888665542 4579999999999999999989999996422222211 1111 Q ss_pred hhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHH-hccChhHHHHH-HHHHH Q lcl|Aclame:pro 178 RKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLY-DKADKPSEQIA-AQKLD 255 (341) Q Consensus 178 ~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~-n~~~~ptE~~a-~~~i~ 255 (341) .+.........+..+-..+|.++..++. ++.... -++. .++|.+..+. ....+ .....|-=.-. ...-. T Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~-~~~~-~~vmn~~~~~--~l~~lkd~~G~~l~~~~~~~~~~ 209 (311) T protein:vir:81 139 ----KILDTTNIVELTTGTSATPDLAVEAAVG-LVLGDN-LSPD-GVALDNTFSF--MLATQRDSQGRKLYPELGFGTDV 209 (311) T ss_pred ----cccccceeeeecccccchHHHHHHHHHH-HhhhcC-CCce-EEEEcHHHHH--HHHhhhccCCCeeecCccccCCC Confidence 1111111111112222234444444443 333322 2333 4788887654 33333 22222210000 00113 Q ss_pred HhhcCcccccCCcCCCCCE------------------EEeccCCcEEEEecCcEEEEEEEcccccceecc-cc---ceee Q lcl|Aclame:pro 256 KTIAGRPAYVPPFLPDNAM------------------VVTIPENLQVLTQHGTAQRKAKHESDRKRSKTH-TG---AWKV 313 (341) Q Consensus 256 k~igGlpa~~vPffP~~~i------------------lVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y-~s---~YvV 313 (341) .++-|+|++..-++|++.. ++=.++++-|-...+- +-.+-++.+-+...+| ++ +|.+ T Consensus 210 ~tl~G~Pv~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~gDfs~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~r~ 288 (311) T protein:vir:81 210 ASFAGLNAAVSDTVRGGPEAVTASTGVYRTTNPNVKAIAGDFSAFRWGVQVSI-PLELIEFGDPDGLGDLKRQNQIAIRA 288 (311) T ss_pred ceecceeEEecccccccccccccccchhcccCCccEEEEEecccEEEEEeccc-eEEEeccCCCCcchhhhhcCcEEEEE Confidence 5788999999888887653 3444444443333332 2222222222222222 22 6655 Q ss_pred cc-chh--eeeeccccccCCcch Q lcl|Aclame:pro 314 TQ-WVC--WKRSPLTTQKKSTSA 333 (341) Q Consensus 314 Ed-yg~--~~~~~~~~~~~~~~a 333 (341) +- +|+ .....|...+.++-| T Consensus 289 ~~r~d~~v~~~~a~~~l~~a~~~ 311 (311) T protein:vir:81 289 EVVYGIGIMSTDAFAVVRDADES 311 (311) T ss_pred EEEeccEeecccceEEEEeeccC Confidence 54 443 334446666666666 No 88 >protein:vir:3845 Length: 395 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050151;swissprot:trembl:q9t1f6;genbank:gi:9633043;uniprot:Q9T1F6;genbank:GeneID:1262163 Probab=97.25 E-value=0.00011 Score=42.18 Aligned_cols=290 Identities=9% Similarity=0.061 Sum_probs=152.9 Q ss_pred CC-ccccHHHHHHHHHHHHHHHHhh--Cchh-hcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeec--cc Q lcl|Aclame:pro 1 MS-QILTQSAREYMDNFAQQLAKSY--GVSN-VAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDV--GV 74 (341) Q Consensus 1 m~-~~M~~~tr~~~~~y~~~~A~~n--gv~~-~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~l--gv 74 (341) +. ......++...+.+....-+.- ++.. .+-.+.|-+.....+++.+.+.+.+++.+++++++...|..... .. T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~vP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 160 (395) T protein:vir:38 81 LPVKDGKPDAQAMKNQFVKDFKNLVTSGTTGTGNAGLTIPEDIQLQIRTLTRSFTSLESLANVENVTTSHGSRVYEKLAD 160 (395) T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhhccCccCCCceecchhHhhHHHHHHHhhcchhhhcceeeccCCcceEEEEeecc Confidence 11 0111223333444443322211 1222 23346676777889999999999999999999998888875432 22 Q ss_pred ccccCCCCCC-Cccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcccc Q lcl|Aclame:pro 75 SGLYTGRKAG-GRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVS 151 (341) Q Consensus 75 ~g~iagrt~t-~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s 151 (341) .++.++-... +..+ ..+.++...+.+++.---+.|+.+.|+.- .++|++.+.+.+.+.++.-.-.--+||.- T Consensus 161 ~~~~a~~v~E~~~~~~~~~~~f~~v~~~~~k~~~~~~iS~ell~ds-----~~~l~~~i~~~la~~~~~~~~~~il~g~g 235 (395) T protein:vir:38 161 ITPLKDLDDESALIGDNDDPELTVVKYLIHRYAGITTVTNTLLKDT-----VDNIIQWLVNWAAKKDVVTRNAKILEVMG 235 (395) T ss_pred CCccccccccccccccccccceeeEEeeeeeeEeehhhHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhccc Confidence 2333333222 2222 12345666777777665566766666542 26899999999999998766666666633 Q ss_pred ccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHH Q lcl|Aclame:pro 152 AEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLI 231 (341) Q Consensus 152 ~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLl 231 (341) .... .++...|..|. ++++..+++.++. .-+++|.+..+ T Consensus 236 ~~~~-----------------------------------~~~~~~~~~i~----~~~~~~l~~~~~~--~a~~v~n~~~~ 274 (395) T protein:vir:38 236 KAPK-----------------------------------KPTISQFDNIK----DLENNTLDPAIES--TSSFITNQSGY 274 (395) T ss_pred cccc-----------------------------------ccccccHHHHH----HHHHHhhhhhhcC--CCEEEEcHHHH Confidence 1110 01122333333 3344456777765 46899999875 Q ss_pred HHHHhHHH-hccChhH-HHHHHHHHHHhhcCcccccCCcCCCC------CEEEeccCCc-EEEEecCcEEEEEEEccc-- Q lcl|Aclame:pro 232 GAAQAKLY-DKADKPS-EQIAAQKLDKTIAGRPAYVPPFLPDN------AMVVTIPENL-QVLTQHGTAQRKAKHESD-- 300 (341) Q Consensus 232 a~~~~~l~-n~~~~pt-E~~a~~~i~k~igGlpa~~vPffP~~------~ilVT~l~NL-sIY~Q~gs~RR~~~d~~~-- 300 (341) .. +..+ .....|- ..........++-|+|++..+..|.. .+++-.|++. -|+...| ..=.+.+... T Consensus 275 ~~--L~~lkd~~G~~l~~~~~~~~~~~~l~G~pV~~~~~~~~~~~~~~~~i~~gd~~~~~~i~~~~~-~~i~~~~~~~~~ 351 (395) T protein:vir:38 275 NI--LSKVKDADGRYLMQPDVTSPDKYLIDGKPVIRIADKWLPDVSGSHPLYFGDLKQGITLFDRQQ-MQIDTTNVGAGS 351 (395) T ss_pred HH--HHHhhccCCceeeccCcCCCCcceeccceeEEecccccCcCCCcceEEEEeccccEEEEEecc-eEEEEeccccch Confidence 52 3333 2222221 00000011247899999988764433 3777788773 4444444 2222222221 Q ss_pred --ccceecc---ccceeeccchheeeeccccccCCcchhccccc Q lcl|Aclame:pro 301 --RKRSKTH---TGAWKVTQWVCWKRSPLTTQKKSTSALNHRSE 339 (341) Q Consensus 301 --r~rve~y---~s~YvVEdyg~~~~~~~~~~~~~~~a~~~~~~ 339 (341) ++.+.-. .-++.|-+-.+|....++..+..+++.-.--. T Consensus 352 ~~~~~~~~r~~~r~d~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 395 (395) T protein:vir:38 352 FEHDTTKLRFIDRFDVQLIDDGAFAAASFKTVANQAQGTAGTGK 395 (395) T ss_pred hhcCceEEEEEEeeccEEecccceEEEEeecccCCCCCccCCCC Confidence 2222211 11444445557777777665544444322222 No 89 >protein:vir:80128 Length: 466 # NCBI annotation: Phage capsid protein # Family: family:all:635 # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425603;genbank:gi:155042936;genbank:GeneID:5469556 Probab=97.25 E-value=2.1e-05 Score=46.26 Aligned_cols=311 Identities=8% Similarity=0.008 Sum_probs=136.3 Q ss_pred CCc---cccHHHHHH------HHHHHHHHHHhhCch--hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccce Q lcl|Aclame:pro 1 MSQ---ILTQSAREY------MDNFAQQLAKSYGVS--NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQV 69 (341) Q Consensus 1 m~~---~M~~~tr~~------~~~y~~~~A~~ngv~--~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~ 69 (341) ++. .|....|.. +..+...+....... .......|-..+...+++.+.+.+.+++.++++++.-.. . T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~vP~~~~~~i~~~l~~~~~l~~~~~v~~~~g~~--~ 193 (466) T protein:vir:80 116 MKGFFRNMPYEQRAALIARSEVKEFLAQVRTLAQQKRAVSGAELTIPDVMLELLRDNMHRYSKLISKVRLRPLKGTA--R 193 (466) T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHhhhhhhhhhhheeeeecCcee--E Confidence 000 111111111 111221211111111 111223444457788899999999999999999885321 2 Q ss_pred eecccccccCCCCCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhh Q lcl|Aclame:pro 70 VDVGVSGLYTGRKAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGW 147 (341) Q Consensus 70 i~lgv~g~iagrt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGf 147 (341) +.+...++.+.-+..+ .....+.++...|.+++.---+.|+.++|+.= .++|+..+++.++++++.=.-.--+ T Consensus 194 ~~~~~~~~~a~wv~E~~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~ds-----~~~l~~~i~~~la~~~~~~~~~ail 268 (466) T protein:vir:80 194 QNIAGAIPEGVWTEAVANLNELSLSFSQIEVDGYKVGGFIPIPNSTLEDS-----DLNLADEILDAIGQAIGFALDKAIL 268 (466) T ss_pred eeeecCCcceeecccccccccccccccceeecceeeeeehhhhHHHHhcc-----hHHHHHHHHHHHHHHHHHHHhhhee Confidence 2222222323222211 11123445566666666655688888877521 3579999999999987765555555 Q ss_pred ccccccccCChhhccchhhhhhhHHHHHHHh--hccccccccc------------eeecCCchhhhHHHHHHHHHhcccc Q lcl|Aclame:pro 148 NGVSAEADTDPSANPLGQDVNEGWIAFVKNR--KASQVVDVDV------------YFDETNGDYRTLDAMASDIINNQIH 213 (341) Q Consensus 148 nG~s~A~~TD~~anPllqDVNkGWlq~~Re~--~~~~v~~~~~------------~~~g~ggdy~nLDalv~d~~~~li~ 213 (341) ||+- ..+| +|+|..+-.. ++........ ...+..+.+...|. +..+ ..+.+ T Consensus 269 ~G~G-------~~~P------~Gil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~ 333 (466) T protein:vir:80 269 YGTG-------TKMP------VGIVTRLAQTTQPPNWGTKAPAWTNLSTTNLLKIDPTGKSAEEFFSEL-VLKL-SKARA 333 (466) T ss_pred eccC-------CCCc------ceeeecccccccccccccccccccccchhhhhhhhhhccchhhHHHHH-HHHH-Hhhhc Confidence 6622 1122 3554311000 0000000000 00122222222332 2211 11222 Q ss_pred hhhccCCCeEEEeChHHHHHHHhHHHhccChhHHHHHHHHH-HHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEE Q lcl|Aclame:pro 214 PMFRNDPRLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKL-DKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQ 292 (341) Q Consensus 214 ~~~r~~~dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i-~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~R 292 (341) .. ..+..++++..+.... ...+.-..+....-. ...- ...+.|+|++.-|++|++.+++-.++...|+...|- + T Consensus 334 ~~--~~~~~~w~~~~~~~~~-l~~~~~~~~~~g~~~-~~~~~~~~i~G~pvv~s~~~~~~~~~~g~~~~y~i~~r~~~-~ 408 (466) T protein:vir:80 334 NY--SNGMKFWAMSSNTHAV-LMSKAITFNSAGALV-ASLNNTMPIVGGDIVILDFIPDNDIIGGYGSLYLLAERADI-K 408 (466) T ss_pred cc--cCCceeEEecchhHHH-hhcccccccCCcccc-ccCCCcccccccceeecCccCccceeeeccccEEEEeecce-E Confidence 22 3456677777664332 122210001110000 0000 124789999999999999999988887666544432 2 Q ss_pred EEEEEcccccceeccccceeecc--------chheeeeccccccCCcchhcccccCC Q lcl|Aclame:pro 293 RKAKHESDRKRSKTHTGAWKVTQ--------WVCWKRSPLTTQKKSTSALNHRSERN 341 (341) Q Consensus 293 R~~~d~~~r~rve~y~s~YvVEd--------yg~~~~~~~~~~~~~~~a~~~~~~~~ 341 (341) -... ++..-.++ +-.|.+.. ..+|...++.+.+-.++=.-.-+|-+ T Consensus 409 i~~~--~~~~f~~d-~~~~r~~~r~dg~~~~~~afv~~~~~~~~~~~~~~~~~~~~~ 462 (466) T protein:vir:80 409 LAQS--EHVRFIED-QTVFKGTARYDGKPVFGEGFVAVNIANANPTTSITFAPDEAN 462 (466) T ss_pred EEec--hhhhhhcC-cEEEEEEEEEccEEeccCceEEEEecCCCcccceeeecCcCc Confidence 2221 11111111 11333332 23444444444322222111223333 No 90 >protein:vir:99749 Length: 324 # NCBI annotation: head protein # Family: family:all:507 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004307;genbank:gi:122891761;genbank:GeneID:4712304 Probab=97.24 E-value=0.00012 Score=42.06 Aligned_cols=295 Identities=9% Similarity=-0.023 Sum_probs=151.5 Q ss_pred CCcccc--HHHHHHHHHHHHHHHHhhC--ch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc Q lcl|Aclame:pro 1 MSQILT--QSAREYMDNFAQQLAKSYG--VS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS 75 (341) Q Consensus 1 m~~~M~--~~tr~~~~~y~~~~A~~ng--v~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~ 75 (341) |.. |+ +...+.|..+..+.+.... +. .......|-+.+...+++.+.+.|.+++..+++++.-... ++-.-.+ T Consensus 1 ~~k-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~lip~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~-~~p~~~~ 78 (324) T protein:vir:99 1 MEQ-TQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLLNDFTTPILQEVMENSKIMRLGKYEPMEGTEK-KFTFWAD 78 (324) T ss_pred CCC-chHhhHHHHHHHHHhhhhhhccccceeccCCCcceechhHHHHHHHHHHhhchhhhhcceeeccCCce-EEEEEec Confidence 553 32 2244555555554443322 11 1123346778889999999999999999999998773321 2222112 Q ss_pred cccCCCCCC-C-ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcccccc Q lcl|Aclame:pro 76 GLYTGRKAG-G-RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAE 153 (341) Q Consensus 76 g~iagrt~t-~-r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A 153 (341) ++-++-... + .....+.++...+.+++.---..|+.+.|+... ++|+..+.+.+.++++.-.-.--++|.- T Consensus 79 ~~~a~~v~Eg~~~~~~~~~~~~v~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~ai~~~~d~~~l~G~g-- 151 (324) T protein:vir:99 79 KPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTY-----SQFFEEMKPMIAEAFYKKFDEAGILNQG-- 151 (324) T ss_pred CcceeEeccCccccccccceeEEEEeeEEEEEeehhhHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHhhhcCC-- Confidence 222222111 1 112234567777888887777888888777654 5899999999999887766666678732 Q ss_pred ccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHH Q lcl|Aclame:pro 154 ADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGA 233 (341) Q Consensus 154 ~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~ 233 (341) +++ .|. |=+. ....+.....+.-.|.. +.+++.. |++.+++.. +++|.+..++. T Consensus 152 --~~~--~~~------~~~~---------~~~~~~~~~~~~~~~~~----i~~~~~~-l~~~~~~~~--~~v~n~~~~~~ 205 (324) T protein:vir:99 152 --NNP--FGK------SIAQ---------SIEKTNKVIKGDFTQDN----IIDLEAL-LEDDELEAN--AFISKTQNRSL 205 (324) T ss_pred --CCc--cCc------cccc---------cccccceeccccCCHHH----HHHHHHh-hhhccCCCC--EEEEcHHHHHH Confidence 111 111 0000 01111111112223433 3345544 455554433 68888887652 Q ss_pred HHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCC--CEEEeccCCcEEEEecCcEEEEEEEccc--------ccc Q lcl|Aclame:pro 234 AQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDN--AMVVTIPENLQVLTQHGTAQRKAKHESD--------RKR 303 (341) Q Consensus 234 ~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~--~ilVT~l~NLsIY~Q~gs~RR~~~d~~~--------r~r 303 (341) ...+-.....|. . ......++-|+|++..|..|.+ .+++..++++- |...+..+-.+.++.. -.. T Consensus 206 -L~~l~d~~g~~~--~-~~~~~~~l~G~PVv~~~~~~~~~~~~i~gd~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~ 280 (324) T protein:vir:99 206 -LRKIVDPETKER--I-YDRNSDTLDGLPVVNLKSSNLKRGELITGDFDKLI-YGIPQLIEYKIDETAQLSTVKNEDGTP 280 (324) T ss_pred -HHHhhcCCCcee--e-cCCCCccccceeEEeecCCCCCcceEEEEecccEE-EEEecCcEEEEeecccccccccccccc Confidence 222322222220 0 0011246899999999997755 58889999964 4444444444444321 111 Q ss_pred eeccc--c-ceeec--------cchheeeecccc-ccCCcchhc Q lcl|Aclame:pro 304 SKTHT--G-AWKVT--------QWVCWKRSPLTT-QKKSTSALN 335 (341) Q Consensus 304 ve~y~--s-~YvVE--------dyg~~~~~~~~~-~~~~~~a~~ 335 (341) +-.|+ . ++.+| +=.+|......+ +..++||-= T Consensus 281 ~~~f~~~~~~~r~~~r~d~~v~~~~a~~~lt~a~~~~~~~~~~~ 324 (324) T protein:vir:99 281 VNLFEQDMVALRATMHVALHIADDKAFAKLVPADKKTDSVPGEV 324 (324) T ss_pred hhhhhcCcEEEEEEEEEccEEecccceEEEEeccCCCCCCCCCC Confidence 11121 1 44444 333343333222 222233222 No 91 >protein:vir:99920 Length: 311 # NCBI annotation: gp7 # Family: family:all:966 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655524;genbank:gi:109392294;genbank:GeneID:4157089 Probab=97.23 E-value=5.4e-05 Score=43.96 Aligned_cols=285 Identities=6% Similarity=-0.100 Sum_probs=143.6 Q ss_pred HHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCC-Cc-cccccCCCCcc Q lcl|Aclame:pro 20 LAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAG-GR-FTKQVGVGGHK 97 (341) Q Consensus 20 ~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t-~r-~~r~~~l~~~~ 97 (341) ||.. ..+-.+.|-+.+.+.+.+.+.+.|.+++..+++++..- +.++-.-.+++.++-... +. ....+.++... T Consensus 1 Mat~----tt~~g~~vP~~~~~~ii~~~~~~s~l~~~~~~i~~~~~-~~~~p~~~~~~~a~wv~Eg~~~~~~~~~f~~v~ 75 (311) T protein:vir:99 1 MATF----GTGNLKNLPRNIADGMVKDVVQGSTVAVLSARKPQRFG-NEDIITFNGRPKAEFVGEGQQKSSTTGEFDFVT 75 (311) T ss_pred Ccee----cCCCceeccHHHHHHHHHHHHhhchhhhhcceeeccCC-ceEEEEEeCCceeEEeecCcccccccceeeEEE Confidence 3311 23345678778889999999999999999999988742 233333233333333221 11 12234566677 Q ss_pred eEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHH Q lcl|Aclame:pro 98 YKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKN 177 (341) Q Consensus 98 Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re 177 (341) +..++.---+.|+.++|.++... ..+|.+.+++.+.++++.-.-.-.|+|.-.... ++|.+ ..+|+... T Consensus 76 l~~~k~~~~~~iS~ell~~~~d~--~~~l~~~i~~~la~ai~~~~d~~~l~G~g~~~g----~~~~g---~~~~~~~~-- 144 (311) T protein:vir:99 76 STPKKAQVTMRFNEEVQWADEDY--QLGVLQTLSEAGAEALARALDLGLYHRINPLTG----TVIPG---WSNYLGAA-- 144 (311) T ss_pred EeeEEEEEeehhhHHHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHhhcccCcccC----ccccc---cccccccc-- Confidence 77777777788888988777542 478999999999999999998889998542211 11221 11222110 Q ss_pred hhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhH-HHhccChhHHHHHHH-HHH Q lcl|Aclame:pro 178 RKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAK-LYDKADKPSEQIAAQ-KLD 255 (341) Q Consensus 178 ~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~-l~n~~~~ptE~~a~~-~i~ 255 (341) ...+..+ ..+-..+++.+.+++..+ .....+-.--.++|.+.... .+. |-.....|-=.-... .-. T Consensus 145 --------~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~vmn~~~~~--~L~~lkd~~G~~l~~~~~~~~~~ 212 (311) T protein:vir:99 145 --------SKRVELT-ADTIANPDLAIEAAVGLL-VANGHPTPVNGLALHPSIAW--GLSTARYTDGRKKFPELGLGIGV 212 (311) T ss_pred --------cceeecc-ccccchhHHHHHHHHHHH-hhhccCCCccEEEEcHHHHH--HHHhhhccCCCeeecCcccCCCC Confidence 1111111 112223455555555422 22222222224788887655 233 322222221000000 002 Q ss_pred HhhcCcccccCCcCCCCCEEE----------------eccCCcEEE-EecCcEEEEEEEcccccceecccc---ceeecc Q lcl|Aclame:pro 256 KTIAGRPAYVPPFLPDNAMVV----------------TIPENLQVL-TQHGTAQRKAKHESDRKRSKTHTG---AWKVTQ 315 (341) Q Consensus 256 k~igGlpa~~vPffP~~~ilV----------------T~l~NLsIY-~Q~gs~RR~~~d~~~r~rve~y~s---~YvVEd 315 (341) .++-|+|++...++|++.... -.++++--| ..++..=+..........+--|++ +|.+|- T Consensus 213 ~~l~G~Pv~~s~~i~~~~~~~~~~~~~~~~~~~~~~~Gdf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~r~~~ 292 (311) T protein:vir:99 213 SSFEGIDASVSDTVNGGDEADPDDEDLDAARAVRGIVGDFANGIHWGVQRDIPVELIKYGDPDGQGDLKRHNQIALRLEI 292 (311) T ss_pred ceecceeeEeecccccccccccccchhhccCcceEEEeeccccEEEEEecCceEEEeecCCCCcchhhhhcCcEEEEEEE Confidence 478999999999888665432 233332212 122211111111111111111222 566555 Q ss_pred c-hhe-eeeccccccCCcc Q lcl|Aclame:pro 316 W-VCW-KRSPLTTQKKSTS 332 (341) Q Consensus 316 y-g~~-~~~~~~~~~~~~~ 332 (341) + |+. ..-+|..++.+++ T Consensus 293 r~d~~v~~~~~v~~~~~~A 311 (311) T protein:vir:99 293 VYGWYVFTDRFVVIENAVA 311 (311) T ss_pred eecceecChhHeeeecccC Confidence 3 432 1122333333333 No 92 >protein:vir:4997 Length: 397 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049971;genbank:gi:9632943;genbank:GeneID:1262106 Probab=97.14 E-value=0.00015 Score=41.47 Aligned_cols=285 Identities=10% Similarity=0.108 Sum_probs=144.6 Q ss_pred CCccccHHHHHHHHHHHHH-----HHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeeccc- Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQ-----LAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGV- 74 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~-----~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv- 74 (341) -.-.+...-+..|.+|+.. ...........-.+.|-+.+...+++.+.+.+.+++.+++++++...|....... T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~gg~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (397) T protein:vir:49 82 NEEEVKANFVKDFKNLVRGRYQNLLDSKTDGSGSDAGLTIPQDIRTAINTLVRQFDSLQEYVNVENVTTLTGSRVYEKWA 161 (397) T ss_pred hhhHHHHHHHHHHHHHhhcchhhHHHhhhccCCccCcceecHHHHHHHHHHHHhhhhHhhhcceeeccCCcceEEEEeec Confidence 0111222334445555432 0111111122335677666778999999999999999999999888776543322 Q ss_pred -ccccCCCCCCCc-cc-c-ccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccc Q lcl|Aclame:pro 75 -SGLYTGRKAGGR-FT-K-QVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGV 150 (341) Q Consensus 75 -~g~iagrt~t~r-~~-r-~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~ 150 (341) .++.+.-...+. .+ . .+.++...+.+++.---+.|+.+.|..-. .+|...+.+.+.++++.-.-.--++|+ T Consensus 162 ~~~~~a~~v~E~~~~~~~~~~~~~~v~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~~~~~~~d~ail~G~ 236 (397) T protein:vir:49 162 DITGLAKLDDEGGQIGQNDDPKLSLIRYAIKRYAGISTVTNSLLADSA-----ENILAWLSGWIAKKVVVTRNKAILEAI 236 (397) T ss_pred cCCcceeeeccccccccccccceeeeEeeeeeeEeehhhHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 222333332221 11 1 12456666777766555667666665322 478999999999999887777777884 Q ss_pred cccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHH Q lcl|Aclame:pro 151 SAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGL 230 (341) Q Consensus 151 s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dL 230 (341) -.. .| .+..- +.|.+ .+++.. +++.|+.. -+++|.+.. T Consensus 237 g~~-------~~----------------------------~~~~~---~~d~i-~~~~~~-l~~~~~~~--a~~v~n~~~ 274 (397) T protein:vir:49 237 GTL-------PN----------------------------KPTLA---KWDDI-IDLQAK-VDPAIKQT--SLFLTNTSG 274 (397) T ss_pred ccc-------cc----------------------------ccccc---CHHHH-HHHHHh-hhhhhcCC--CEEEEcHHH Confidence 321 00 01112 23433 244543 46666653 488999987 Q ss_pred HHHHHhHHHh-ccChhHHHHHHHHH----HHhhcCcccccCC--cCCCC-----CEEEeccCCcE-EEEecCcEEEEEEE Q lcl|Aclame:pro 231 IGAAQAKLYD-KADKPSEQIAAQKL----DKTIAGRPAYVPP--FLPDN-----AMVVTIPENLQ-VLTQHGTAQRKAKH 297 (341) Q Consensus 231 la~~~~~l~n-~~~~ptE~~a~~~i----~k~igGlpa~~vP--ffP~~-----~ilVT~l~NLs-IY~Q~gs~RR~~~d 297 (341) +. ++..+. ....| +...-+ ..++-|+|++.++ .+|.. .+++-.|++-. ++.+.| ..=...+ T Consensus 275 ~~--~l~~lkd~~g~~---l~~~~~~~g~~~~l~G~pV~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~-~~i~~~~ 348 (397) T protein:vir:49 275 FT--ALKKVKNAMGDY---LMERDVKSPTGYSIDGFVVKEISDRFLPNGTGGAMPLYFGDLKQAVTLFDRQH-LSLLSTN 348 (397) T ss_pred HH--HHHHhhccCCce---eecccccCCCCceecceeeEEecccccccccCCceeEEEeeccceEEEEeecc-cEEEEec Confidence 65 344332 22222 110011 2479999998755 45543 47777788644 444444 2221111 Q ss_pred cccccceecccccee--------eccchheeeeccccccCCcchhccccc Q lcl|Aclame:pro 298 ESDRKRSKTHTGAWK--------VTQWVCWKRSPLTTQKKSTSALNHRSE 339 (341) Q Consensus 298 ~~~r~rve~y~s~Yv--------VEdyg~~~~~~~~~~~~~~~a~~~~~~ 339 (341) .. -+.+....-+|. |-+..+|.-..++....++|++-.--- T Consensus 349 ~~-~~~~~~~~~~~~~~~r~d~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (397) T protein:vir:49 349 IG-GGAFETDTTKVRVIDRFDVVSTDTEAFVPASFKAIADQKAKLSTAGA 397 (397) T ss_pred cc-cchhhcCeeeEEEEEeeccEEecccceEEEEecccccccCcccccCC Confidence 11 111111112333 333334444444443332222211111 No 93 >protein:vir:4856 Length: 293 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049396;genbank:gi:9632424;genbank:GeneID:1258532 Probab=97.08 E-value=0.00011 Score=42.27 Aligned_cols=262 Identities=10% Similarity=0.110 Sum_probs=142.0 Q ss_pred HHHhhCch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeec--ccccccCCCCCCC-ccc--cccCC Q lcl|Aclame:pro 20 LAKSYGVS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDV--GVSGLYTGRKAGG-RFT--KQVGV 93 (341) Q Consensus 20 ~A~~ngv~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~l--gv~g~iagrt~t~-r~~--r~~~l 93 (341) +.+..... ...-.+.|-+...+.+++.+++.+.+++..+++++....|..... ...++.++-...+ ..+ ..+.+ T Consensus 1 ~l~~~~~~t~~~gg~liP~~~~~~Ii~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~v~Eg~~~~~~~~~~~ 80 (293) T protein:vir:48 1 MLDSKTDHSGSDAGLTIPQDIRTAINTLVRQYDSLQEYVNVENVTTLTGSRVYEKWTDITGLANIDDEAGKIADIDDPKL 80 (293) T ss_pred CceeecccccCcCceEechhHHHHHHHHHHhhhhhhhhceeeeccCCcceEEEEeecCCCcceeeecCCcccccccccce Confidence 33333222 223456777777899999999999999999999998888875433 2233334433322 222 23456 Q ss_pred CCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHH Q lcl|Aclame:pro 94 GGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIA 173 (341) Q Consensus 94 ~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq 173 (341) +...+.|++.---+.|+.+.|+... .++++.+++.+.+.++.-.-.--++|..- T Consensus 81 ~~i~l~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~la~~~~~~~~~~i~~g~~~--------------------- 134 (293) T protein:vir:48 81 SLIKYTIKRYAGISTVTNSLLADSA-----ENILAWLSGWIAKKVVVTRNKAILGVVDK--------------------- 134 (293) T ss_pred eEEEEeeeEEEEeehhhHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHhHHhhcccc--------------------- Confidence 7778888887777888888876443 57888888888888765332222222110 Q ss_pred HHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHH-hccChhHHHHHHH Q lcl|Aclame:pro 174 FVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLY-DKADKPSEQIAAQ 252 (341) Q Consensus 174 ~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~-n~~~~ptE~~a~~ 252 (341) .....+.-+|.+|- +++.. +++.++.. -+++|.+..++ ++..+ .....| +... T Consensus 135 --------------~~~~~~~~~~d~i~----~~~~~-l~~~~~~~--a~~vmn~~~~~--~L~~lkd~~g~~---l~~~ 188 (293) T protein:vir:48 135 --------------LPTKPTLTKWDDII----DLEAK-VDPAIKQT--SFFLTNTSGFT--ALKKVKNALGDY---LMER 188 (293) T ss_pred --------------ccccccccCHHHHH----HHHHh-hhhhhcCC--CEEEEcHHHHH--HHHHhhccCCce---Eeec Confidence 00011223343333 34444 35566643 47889988765 33333 222222 1000 Q ss_pred HH----HHhhcCcccccCC--cCCCC-----CEEEeccCCc-EEEEecCcEEEEEEEcc----cccceecc---ccceee Q lcl|Aclame:pro 253 KL----DKTIAGRPAYVPP--FLPDN-----AMVVTIPENL-QVLTQHGTAQRKAKHES----DRKRSKTH---TGAWKV 313 (341) Q Consensus 253 ~i----~k~igGlpa~~vP--ffP~~-----~ilVT~l~NL-sIY~Q~gs~RR~~~d~~----~r~rve~y---~s~YvV 313 (341) .+ ..++-|+|++.++ ++|.. .+++-.+++. -|..+.+ .+=...+.. +++.+.-+ .-++++ T Consensus 189 ~~~~~~~~~l~G~Pv~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~r~~~r~d~~~ 267 (293) T protein:vir:48 189 DVKSPTGYSIAGFAVKEISDRWLPNASSGVMPLYFGDLKQAVTLFDRQQ-MSLLSTNIGGGAFETDTTKVRVIDRFDVVA 267 (293) T ss_pred CcCCCCCceecceeeEEecccccCCccCCceEEEEEeccceEEEEEecc-eEEEEecccchhhhcCeEEEEEEEeeCcEE Confidence 11 2479999997754 45543 2677777774 4444544 222211111 12222211 114445 Q ss_pred ccchheeeeccccccCC-----cchh Q lcl|Aclame:pro 314 TQWVCWKRSPLTTQKKS-----TSAL 334 (341) Q Consensus 314 Edyg~~~~~~~~~~~~~-----~~a~ 334 (341) -+-.++....++....| +.|+ T Consensus 268 ~~~~a~~~l~~~~~~~~~~~~~~~~~ 293 (293) T protein:vir:48 268 TDTEAFVPASFKAIADQKGNIGSTAV 293 (293) T ss_pred ecccceEEEEeeccccCCccccccCC Confidence 55556665565554333 4445 No 94 >protein:vir:2685 Length: 387 # NCBI annotation: hypothetical protein # Family: family:all:658 # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075504;genbank:gi:12719433;genbank:GeneID:920169 Probab=97.00 E-value=0.00021 Score=40.69 Aligned_cols=281 Identities=9% Similarity=0.011 Sum_probs=130.7 Q ss_pred CCccccHHHHHHHHHHHHHHHH----------------hhCc-hhhcceeecChHHHHHHHHHHHhhHHHhcccceecch Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAK----------------SYGV-SNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVD 63 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~----------------~ngv-~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~ 63 (341) -+..........|..|+..... .... .+..-.+.|-+.+...+++.+.+.+.+++.++++++. T Consensus 79 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a~~~~~~~~gG~lIP~~~~~~Ii~~~~~~~~l~~~~~~~~~~ 158 (387) T protein:vir:26 79 QSLSDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLSKEIVSEPFAKNQLREKARLTNIK 158 (387) T ss_pred CCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCCCCCceeechhHHHHHHHHHHhhchhhhhceeeecC Confidence 0111111112223333322210 0000 0112257787778999999999999999999999987 Q ss_pred hhccceeecccccccCCCCCCCc--cccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 64 QIEGQVVDVGVSGLYTGRKAGGR--FTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALD 141 (341) Q Consensus 64 ~~~Ge~i~lgv~g~iagrt~t~r--~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD 141 (341) ..+.-++..+ +.-++-...+. ....+.++...|..++.---+.|++++|+... ++|+..+.+.+.++++.- T Consensus 159 ~~~~p~~~~~--~~~a~~v~Eg~~~~~~~~~f~~v~l~~~k~~~~i~iS~ell~ds~-----~~l~~~i~~~la~~~~~~ 231 (387) T protein:vir:26 159 GLEIPRVSYT--LDDDDFITDVETAKELKAKGDTVKFTTNKFKVFAAISDTVIHGSD-----VDLVNWVENALQSGLAAK 231 (387) T ss_pred Cceeeeeecc--CCccccccccccccccccccceeeechheeeeechhhHHHHhhhH-----HHHHHHHHHHHHHHHHHH Confidence 6555443332 22222222111 11122333333333333333778888777554 689999999999988764 Q ss_pred HHHHhh-ccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCC Q lcl|Aclame:pro 142 IMRIGW-NGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDP 220 (341) Q Consensus 142 ~i~IGf-nG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~ 220 (341) ..-.-| +| +.+.-|. |.+ ....+..-++.+ ..|.+ .+++.+ +++.|+... T Consensus 232 e~~~~~~~g-------~g~g~~~------g~~------------~~~~~~~~~~~~--~~d~i-~~~~~~-l~~~y~~na 282 (387) T protein:vir:26 232 ERKDALAVS-------PKSGLEH------MSF------------YNGSVKEVEGAD--MYDAI-INALAD-LHEDYRDNA 282 (387) T ss_pred HHHhHhhcC-------CCccccc------eee------------eccccccccccc--hHHHH-HHHHhc-cChhhhcCC Confidence 322223 22 1111221 221 111111111211 24543 455554 577777643 Q ss_pred CeEEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccc Q lcl|Aclame:pro 221 RLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESD 300 (341) Q Consensus 221 dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~ 300 (341) +++|.+.-+.. ..+++...+.|- .++ -..++-|+|++....+|. +++=.| |-||- + +++...+ +. T Consensus 283 --~~imn~~t~~~-~~~~~~~~~~~~--~~~--~~~~llG~PV~~~~~~~~--~~~GDf---~~~~~-~-~~~~~~~-~~ 347 (387) T protein:vir:26 283 --TIYMRYADYVK-IISVLSNGTTNF--FDT--PAEKVFGKPVVFTDAAVK--PIVGDF---NYFGI-N-YDGTTYD-TD 347 (387) T ss_pred --EEEEechHHHH-HHHHHhcCCCcc--ccc--CCccccccceEEecCCCc--eeeech---hhhhh-h-hhhhhhe-ec Confidence 67776643322 233443333321 000 124788999999998875 555544 44442 1 2222221 11 Q ss_pred ccceeccccceeecc-ch-------heeeeccccccCCcch Q lcl|Aclame:pro 301 RKRSKTHTGAWKVTQ-WV-------CWKRSPLTTQKKSTSA 333 (341) Q Consensus 301 r~rve~y~s~YvVEd-yg-------~~~~~~~~~~~~~~~a 333 (341) ++. ..-.-+|++.. +| +|....++....|+|- T Consensus 348 ~~~-~~~~~~~~~~~r~Dg~v~~~~A~~~l~~ka~~~~~~~ 387 (387) T protein:vir:26 348 KDV-KKGEYLFVLTAWYDQQRTLDSAFRIAKAKENTGPLPS 387 (387) T ss_pred ccc-cCCceEEEEEEEeCcEeechhheEEEEeecCCCCCCC Confidence 111 10011444332 33 3344444444444444 No 95 >protein:vir:96978 Length: 387 # NCBI annotation: ORF009 # Family: family:all:658 # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239859;genbank:gi:66395517;genbank:GeneID:5133011 Probab=97.00 E-value=0.00021 Score=40.69 Aligned_cols=281 Identities=9% Similarity=0.011 Sum_probs=130.7 Q ss_pred CCccccHHHHHHHHHHHHHHHH----------------hhCc-hhhcceeecChHHHHHHHHHHHhhHHHhcccceecch Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAK----------------SYGV-SNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVD 63 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~----------------~ngv-~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~ 63 (341) -+..........|..|+..... .... .+..-.+.|-+.+...+++.+.+.+.+++.++++++. T Consensus 79 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a~~~~~~~~gG~lIP~~~~~~Ii~~~~~~~~l~~~~~~~~~~ 158 (387) T protein:vir:96 79 QSLSDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLSKEIVSEPFAKNQLREKARLTNIK 158 (387) T ss_pred CCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCCCCCceeechhHHHHHHHHHHhhchhhhhceeeecC Confidence 0111111112223333322210 0000 0112257787778999999999999999999999987 Q ss_pred hhccceeecccccccCCCCCCCc--cccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 64 QIEGQVVDVGVSGLYTGRKAGGR--FTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALD 141 (341) Q Consensus 64 ~~~Ge~i~lgv~g~iagrt~t~r--~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD 141 (341) ..+.-++..+ +.-++-...+. ....+.++...|..++.---+.|++++|+... ++|+..+.+.+.++++.- T Consensus 159 ~~~~p~~~~~--~~~a~~v~Eg~~~~~~~~~f~~v~l~~~k~~~~i~iS~ell~ds~-----~~l~~~i~~~la~~~~~~ 231 (387) T protein:vir:96 159 GLEIPRVSYT--LDDDDFITDVETAKELKAKGDTVKFTTNKFKVFAAISDTVIHGSD-----VDLVNWVENALQSGLAAK 231 (387) T ss_pred Cceeeeeecc--CCccccccccccccccccccceeeechheeeeechhhHHHHhhhH-----HHHHHHHHHHHHHHHHHH Confidence 6555443332 22222222111 11122333333333333333778888777554 689999999999988764 Q ss_pred HHHHhh-ccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCC Q lcl|Aclame:pro 142 IMRIGW-NGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDP 220 (341) Q Consensus 142 ~i~IGf-nG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~ 220 (341) ..-.-| +| +.+.-|. |.+ ....+..-++.+ ..|.+ .+++.+ +++.|+... T Consensus 232 e~~~~~~~g-------~g~g~~~------g~~------------~~~~~~~~~~~~--~~d~i-~~~~~~-l~~~y~~na 282 (387) T protein:vir:96 232 ERKDALAVS-------PKSGLEH------MSF------------YNGSVKEVEGAD--MYDAI-INALAD-LHEDYRDNA 282 (387) T ss_pred HHHhHhhcC-------CCccccc------eee------------eccccccccccc--hHHHH-HHHHhc-cChhhhcCC Confidence 322223 22 1111221 221 111111111211 24543 455554 577777643 Q ss_pred CeEEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccc Q lcl|Aclame:pro 221 RLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESD 300 (341) Q Consensus 221 dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~ 300 (341) +++|.+.-+.. ..+++...+.|- .++ -..++-|+|++....+|. +++=.| |-||- + +++...+ +. T Consensus 283 --~~imn~~t~~~-~~~~~~~~~~~~--~~~--~~~~llG~PV~~~~~~~~--~~~GDf---~~~~~-~-~~~~~~~-~~ 347 (387) T protein:vir:96 283 --TIYMRYADYVK-IISVLSNGTTNF--FDT--PAEKVFGKPVVFTDAAVK--PIVGDF---NYFGI-N-YDGTTYD-TD 347 (387) T ss_pred --EEEEechHHHH-HHHHHhcCCCcc--ccc--CCccccccceEEecCCCc--eeeech---hhhhh-h-hhhhhhe-ec Confidence 67776643322 233443333321 000 124788999999998875 555544 44442 1 2222221 11 Q ss_pred ccceeccccceeecc-ch-------heeeeccccccCCcch Q lcl|Aclame:pro 301 RKRSKTHTGAWKVTQ-WV-------CWKRSPLTTQKKSTSA 333 (341) Q Consensus 301 r~rve~y~s~YvVEd-yg-------~~~~~~~~~~~~~~~a 333 (341) ++. ..-.-+|++.. +| +|....++....|+|- T Consensus 348 ~~~-~~~~~~~~~~~r~Dg~v~~~~A~~~l~~ka~~~~~~~ 387 (387) T protein:vir:96 348 KDV-KKGEYLFVLTAWYDQQRTLDSAFRIAKAKENTGPLPS 387 (387) T ss_pred ccc-cCCceEEEEEEEeCcEeechhheEEEEeecCCCCCCC Confidence 111 10011444332 33 3344444444444444 No 96 >protein:vir:94424 Length: 387 # NCBI annotation: ORF010 # Family: family:all:658 # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240005;genbank:gi:66395666;genbank:GeneID:5133084 Probab=97.00 E-value=0.00021 Score=40.69 Aligned_cols=281 Identities=9% Similarity=0.011 Sum_probs=130.7 Q ss_pred CCccccHHHHHHHHHHHHHHHH----------------hhCc-hhhcceeecChHHHHHHHHHHHhhHHHhcccceecch Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAK----------------SYGV-SNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVD 63 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~----------------~ngv-~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~ 63 (341) -+..........|..|+..... .... .+..-.+.|-+.+...+++.+.+.+.+++.++++++. T Consensus 79 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a~~~~~~~~gG~lIP~~~~~~Ii~~~~~~~~l~~~~~~~~~~ 158 (387) T protein:vir:94 79 QSLSDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLSKEIVSEPFAKNQLREKARLTNIK 158 (387) T ss_pred CCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCCCCCceeechhHHHHHHHHHHhhchhhhhceeeecC Confidence 0111111112223333322210 0000 0112257787778999999999999999999999987 Q ss_pred hhccceeecccccccCCCCCCCc--cccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 64 QIEGQVVDVGVSGLYTGRKAGGR--FTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALD 141 (341) Q Consensus 64 ~~~Ge~i~lgv~g~iagrt~t~r--~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD 141 (341) ..+.-++..+ +.-++-...+. ....+.++...|..++.---+.|++++|+... ++|+..+.+.+.++++.- T Consensus 159 ~~~~p~~~~~--~~~a~~v~Eg~~~~~~~~~f~~v~l~~~k~~~~i~iS~ell~ds~-----~~l~~~i~~~la~~~~~~ 231 (387) T protein:vir:94 159 GLEIPRVSYT--LDDDDFITDVETAKELKAKGDTVKFTTNKFKVFAAISDTVIHGSD-----VDLVNWVENALQSGLAAK 231 (387) T ss_pred Cceeeeeecc--CCccccccccccccccccccceeeechheeeeechhhHHHHhhhH-----HHHHHHHHHHHHHHHHHH Confidence 6555443332 22222222111 11122333333333333333778888777554 689999999999988764 Q ss_pred HHHHhh-ccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCC Q lcl|Aclame:pro 142 IMRIGW-NGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDP 220 (341) Q Consensus 142 ~i~IGf-nG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~ 220 (341) ..-.-| +| +.+.-|. |.+ ....+..-++.+ ..|.+ .+++.+ +++.|+... T Consensus 232 e~~~~~~~g-------~g~g~~~------g~~------------~~~~~~~~~~~~--~~d~i-~~~~~~-l~~~y~~na 282 (387) T protein:vir:94 232 ERKDALAVS-------PKSGLEH------MSF------------YNGSVKEVEGAD--MYDAI-INALAD-LHEDYRDNA 282 (387) T ss_pred HHHhHhhcC-------CCccccc------eee------------eccccccccccc--hHHHH-HHHHhc-cChhhhcCC Confidence 322223 22 1111221 221 111111111211 24543 455554 577777643 Q ss_pred CeEEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccc Q lcl|Aclame:pro 221 RLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESD 300 (341) Q Consensus 221 dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~ 300 (341) +++|.+.-+.. ..+++...+.|- .++ -..++-|+|++....+|. +++=.| |-||- + +++...+ +. T Consensus 283 --~~imn~~t~~~-~~~~~~~~~~~~--~~~--~~~~llG~PV~~~~~~~~--~~~GDf---~~~~~-~-~~~~~~~-~~ 347 (387) T protein:vir:94 283 --TIYMRYADYVK-IISVLSNGTTNF--FDT--PAEKVFGKPVVFTDAAVK--PIVGDF---NYFGI-N-YDGTTYD-TD 347 (387) T ss_pred --EEEEechHHHH-HHHHHhcCCCcc--ccc--CCccccccceEEecCCCc--eeeech---hhhhh-h-hhhhhhe-ec Confidence 67776643322 233443333321 000 124788999999998875 555544 44442 1 2222221 11 Q ss_pred ccceeccccceeecc-ch-------heeeeccccccCCcch Q lcl|Aclame:pro 301 RKRSKTHTGAWKVTQ-WV-------CWKRSPLTTQKKSTSA 333 (341) Q Consensus 301 r~rve~y~s~YvVEd-yg-------~~~~~~~~~~~~~~~a 333 (341) ++. ..-.-+|++.. +| +|....++....|+|- T Consensus 348 ~~~-~~~~~~~~~~~r~Dg~v~~~~A~~~l~~ka~~~~~~~ 387 (387) T protein:vir:94 348 KDV-KKGEYLFVLTAWYDQQRTLDSAFRIAKAKENTGPLPS 387 (387) T ss_pred ccc-cCCceEEEEEEEeCcEeechhheEEEEeecCCCCCCC Confidence 111 10011444332 33 3344444444444444 No 97 >protein:vir:2430 Length: 318 # NCBI annotation: major head subunit # Family: family:all:507 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046832;genbank:gi:9630400;genbank:GeneID:1261582 Probab=96.94 E-value=0.0002 Score=40.92 Aligned_cols=294 Identities=8% Similarity=0.012 Sum_probs=148.0 Q ss_pred ccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCC Q lcl|Aclame:pro 5 LTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAG 84 (341) Q Consensus 5 M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t 84 (341) |+.-+. |+.-...++. ..+......|-|.+.+.+++.+++.+.+++.++++++.-... ++-.-.+++-+.-... T Consensus 1 ~~~~~~--~~~e~~~~~~---~~~~~~~~~ip~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~-~ip~~~~~~~a~~v~E 74 (318) T protein:vir:24 1 MAAGTA--FAVDHAQIAQ---TGDTMFKGYLEPEQAKDYFAEAEKTSIVQQFAQKVPMGTTGQ-KIPHWVGDVSAQWIGE 74 (318) T ss_pred CCCCCC--CCHHHHHhhc---ccCcccceeechhHHHHHHHHHHhhchhhhhcceeeccCCce-EEEEEeCCcceEEecC Confidence 333222 3322222221 223334456888899999999999999999999998864332 2222223333322221 Q ss_pred -C-ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhhcc Q lcl|Aclame:pro 85 -G-RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANP 162 (341) Q Consensus 85 -~-r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anP 162 (341) + .....+.++..++.+++.---+.|+.+.|+. ..++|+..+.+.+.++++.-.-.--+||+-... | T Consensus 75 g~~~~~~~~~f~~i~~~~~k~~~~~~iS~e~l~d-----s~~~~~~~i~~~l~~~~~~~~d~a~l~G~g~~~-------~ 142 (318) T protein:vir:24 75 GDMKPITKGNMTSQTIAPHKIATIFVASAETVRA-----NPANYLGTMRTKVATAFAMAFDGAAMHGTDSPF-------P 142 (318) T ss_pred CccccccccceeEEEEeeEEEEEeehhhHHHhhc-----ChHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-------C Confidence 1 1222346777788888876666777666552 136899999999999999887777789854211 1 Q ss_pred chhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHHhcc Q lcl|Aclame:pro 163 LGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYDKA 242 (341) Q Consensus 163 llqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~n~~ 242 (341) .+- ++ .....+.... .++.. ..|..+.+++.. +.+.++. ..+++|.+..... ...+-... T Consensus 143 ~~~------~~------~~~~~~~~~~--~~~~~--~~~~~~~~~~~~-~~~~~~~--~~~~v~n~~~~~~-L~~lkd~~ 202 (318) T protein:vir:24 143 TYI------GQ------TTKAISIADT--TGATT--VYDQVAVNGLSL-LVNDGKK--WTHTLLDDITEPI-LNGAKDQN 202 (318) T ss_pred ccc------cc------cccccccccc--ccccc--hHHHHHHHHHHh-hccccCC--CCEEEEcHHHHHH-HHHhhccC Confidence 110 00 0000111111 11222 233344555543 3444443 4588999987652 22232222 Q ss_pred Chh------HHHHHHHHHHHhhcCcccccCCcCCCCCE--EEeccCCcEEEEecCcEEEEEEEccc--------ccceec Q lcl|Aclame:pro 243 DKP------SEQIAAQKLDKTIAGRPAYVPPFLPDNAM--VVTIPENLQVLTQHGTAQRKAKHESD--------RKRSKT 306 (341) Q Consensus 243 ~~p------tE~~a~~~i~k~igGlpa~~vPffP~~~i--lVT~l~NLsIY~Q~gs~RR~~~d~~~--------r~rve~ 306 (341) ..| ..-........++-|+|++..|..|++.. ++-.++.+-| ...+..+-.+.++.. -..+.. T Consensus 203 G~~l~~~~~~~~~~~~~~~~~i~g~pv~~~~~~~~~~~~~~~gdfs~~~~-~~~~~l~i~~~~~~~~~~~~~~~~~~~~~ 281 (318) T protein:vir:24 203 GRPLFIESTYGEAASPFRSGRIVARPTILSDHVVEGTTVGFMGDFSQLIW-GQIGGLSFDVTDQATLNLGTVESPNFVSL 281 (318) T ss_pred CceeecCccccCccccccCceEEEEeeEEeCCCCCCccEEEEeecceEEE-EEecCeEEEEeeccceeccccccccchhh Confidence 111 11111112235788999999999998875 5567777643 333333333322221 111111 Q ss_pred ccc---ceeeccc-hh--eeeeccccccCCcchhccc Q lcl|Aclame:pro 307 HTG---AWKVTQW-VC--WKRSPLTTQKKSTSALNHR 337 (341) Q Consensus 307 y~s---~YvVEdy-g~--~~~~~~~~~~~~~~a~~~~ 337 (341) |++ +|.++-| |+ .....|...+.+++|--.- T Consensus 282 f~~~~~~~r~~~r~d~~v~~~~a~~~i~~~~a~~~~~ 318 (318) T protein:vir:24 282 WQHNLVAVRVEAEYAFHCNDAEAFVALTNVVSGGGEG 318 (318) T ss_pred hhcCcEEEEEEEEEccEEecccceEEEEeeccCCCCC Confidence 211 3444332 22 2222233333332222211 No 98 >protein:vir:78523 Length: 338 # NCBI annotation: Putative head structural protein # Family: family:all:507 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491585;genbank:gi:157786408;genbank:GeneID:5625675 Probab=96.92 E-value=0.00026 Score=40.25 Aligned_cols=296 Identities=9% Similarity=-0.032 Sum_probs=143.6 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhh-----cceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNV-----AELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS 75 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~-----~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~ 75 (341) |+ - ++.+.. ...|.+.- ...--|-+++.+.+++.+++.|.+++.++++++.--. .++-.-.. T Consensus 1 ~~--~-------~~e~~~---~~~~~~~~~~~~~~~~~liP~~~~~~ii~~~~~~s~l~~l~~~~~~~~~~-~~ip~~~~ 67 (338) T protein:vir:78 1 MA--T-------LNELAP---NTAGSNHQGRLAHVPSDLLPKEIVGPIFDKAQESSLVLRLGENIPISYGE-TIIPTTVK 67 (338) T ss_pred Cc--c-------hHHhhh---hhcccccccceecccccccchHHHHHHHHHHHhhchhhhhcceeeccCCc-eEEEEEec Confidence 32 1 111111 12222211 1122477778899999999999999999998876432 22322223 Q ss_pred cccCCCCC---------CCccc-cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHH Q lcl|Aclame:pro 76 GLYTGRKA---------GGRFT-KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRI 145 (341) Q Consensus 76 g~iagrt~---------t~r~~-r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~I 145 (341) ++.++-+. .+..+ ..+.++...+.+++.---+.|+.+.|+.-. ++|+..+.+.+.+.++.-.-.- T Consensus 68 ~~~a~~v~~~~~~~~~Eg~~~~~~~~~f~~v~l~~~k~~~~~~is~ell~ds~-----~~~~~~i~~~la~a~~~~~d~~ 142 (338) T protein:vir:78 68 RPEVGQVGVGTSNEQREGGTKPLSGTAWDTRSVAPIKLATIVTVSEEFARMNP-----SGLYTKLQADLAYAIGRGIDLA 142 (338) T ss_pred CccceeecccccccccccccccccccceeEEEEEEEEEEEeehhhHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHHH Confidence 33322111 11111 234567777888887777778777776533 6899999999999999888888 Q ss_pred hhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEE Q lcl|Aclame:pro 146 GWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVF 225 (341) Q Consensus 146 GfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvi 225 (341) -+||+.....+.| .|++.... .........+..+....|..|..+ +..+..... ...-+++ T Consensus 143 ~l~G~g~~~~~~~----------~gi~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~ 203 (338) T protein:vir:78 143 VFHGKSPLTGSAL----------QGIDTNNV---IVNTTNVDYLQTGTTPLLDRFLDG----YDLVSANTD--VDFNGWA 203 (338) T ss_pred hhcccCCCccccc----------cccccccc---cccccccccccccchhhHHHHHHH----HHHhhhhcc--ccceEEE Confidence 8899664333222 12221000 000000111111222333333333 322221121 1234788 Q ss_pred eChHHHHHH-HhH-HHhccChhH--HHHHHHHHHHhhcCcccccCCcCCCC---------CEEEeccCCcEEEEecCcEE Q lcl|Aclame:pro 226 VGSGLIGAA-QAK-LYDKADKPS--EQIAAQKLDKTIAGRPAYVPPFLPDN---------AMVVTIPENLQVLTQHGTAQ 292 (341) Q Consensus 226 vG~dLla~~-~~~-l~n~~~~pt--E~~a~~~i~k~igGlpa~~vPffP~~---------~ilVT~l~NLsIY~Q~gs~R 292 (341) |.++..+.- ..+ +-+....|- +-. ......++-|+|++.-+++|++ .+++-.+++.-|....| .. T Consensus 204 m~~~~~~~L~~~~~l~d~~g~~l~~~~~-~~~~~~~l~G~PV~~~~~ip~~~~~~~~~~~~~~~gdfs~~~~~~~~~-~~ 281 (338) T protein:vir:78 204 ADPRYRARLLRSQAYRDANGNVDPTRIN-LAASAGDLLGLPVQFGKAVGGDLGAATDSKVRVVGGDFSQLKYGFADE-IR 281 (338) T ss_pred EchHHHHHHHHHhhhccCCCceeecccc-cCCCCceeeeeeEEEccccCccccccCCcccEEEEEecceEEEEeecc-cE Confidence 887654311 111 112222221 000 0011357899999999999964 26667777766554544 33 Q ss_pred EEEEEcccccc--------eecc--cc-ceeeccc-hhe--eeeccccccCCcchhc Q lcl|Aclame:pro 293 RKAKHESDRKR--------SKTH--TG-AWKVTQW-VCW--KRSPLTTQKKSTSALN 335 (341) Q Consensus 293 R~~~d~~~r~r--------ve~y--~s-~YvVEdy-g~~--~~~~~~~~~~~~~a~~ 335 (341) -.+.++..... +.-| +. +|.+|-| |+. ....|.-.+.++.+-- T Consensus 282 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~d~~v~~~~a~~~l~~~~~~~~ 338 (338) T protein:vir:78 282 VKMSDTATLTDNTSPTPQTVSMWQTNQIAILIEVTFGWLLGDKQAFVKFVDDEDPDA 338 (338) T ss_pred EEEeecccccccccccccchhhhhcCcEEEEEEEEeccEeecccceEEEecccCCCC Confidence 33333322111 1111 22 5555553 322 1122322222211111 No 99 >protein:vir:100632 Length: 381 # NCBI annotation: 77ORF006 # Family: family:all:635 # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958606;genbank:gi:41189521;genbank:GeneID:2743778 Probab=96.84 E-value=0.00031 Score=39.84 Aligned_cols=297 Identities=9% Similarity=0.000 Sum_probs=143.8 Q ss_pred CCc------------------------cccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcc Q lcl|Aclame:pro 1 MSQ------------------------ILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKM 56 (341) Q Consensus 1 m~~------------------------~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~ 56 (341) .+. .++.+-|+.|+++.. +. ...-.|.|-++...++.+.+.+.|.+++. T Consensus 37 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~e~~~~~~~~~------~t-~~~Gg~lvP~~~~~~I~~~l~~~spir~~ 109 (381) T protein:vir:10 37 INQLFEETKLQAKAEAERVSSLPKSAQTLSANQRNFFMDINK------SV-GYKEEKLLPEETIDRIFEDLTTNHPLLAD 109 (381) T ss_pred HHhhhhhHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHhh------cC-CCCCceecCHHHHHHHHHHHHhhcceeee Confidence 000 122222233332211 01 11234778888999999999999999999 Q ss_pred cceecchhhccceeecccccccCCCCC--CCc-cccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHH Q lcl|Aclame:pro 57 ITVTTVDQIEGQVVDVGVSGLYTGRKA--GGR-FTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEF 133 (341) Q Consensus 57 Inv~~V~~~~Ge~i~lgv~g~iagrt~--t~r-~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~ 133 (341) ++++++.- +.++....+++.++=.. .++ ....+.++...+.+++.---..|+.++|+--. -+++..+++. T Consensus 110 a~v~~~~~--~~~i~~~~~~~~a~W~~e~~~~~~~~~~~f~~i~l~~~kl~a~i~is~elL~Ds~-----~~le~~i~~~ 182 (381) T protein:vir:10 110 LGIKNAGL--RLKFLKSETSGVAVWGKIYGEIKGQLDAAFSEETAIQNKLTAFVVLPKDLNDFGP-----AWIERFVRVQ 182 (381) T ss_pred eeeEecCc--ceEEEeecCCcceEEeecccccccccCccceeEeecceeEEeeccccHHHHhccH-----HHHHHHHHHH Confidence 99988742 33444444444332111 011 12233445555555555555888988888765 3678888888 Q ss_pred HHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhcccccccccee----ec------CCchhhhHHHH Q lcl|Aclame:pro 134 SNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYF----DE------TNGDYRTLDAM 203 (341) Q Consensus 134 i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~----~g------~ggdy~nLDal 203 (341) +.++||.=.-.-=.||+- +.-| +|+|..+ ++......+... .+ ....|..|.++ T Consensus 183 la~~~a~~~~~afi~GdG-------~~qP------~Gil~~~---~~~~~~~~g~~~~~~~~~~~t~~~~~~~~~~l~~~ 246 (381) T protein:vir:10 183 IEEAFAVALETAFLKGTG-------KDQP------IGLNRQV---QKGVSVTDGAYPEKEEQGTLTFANPRATVNELTQV 246 (381) T ss_pred HHHHHHHHhhceeEeccc-------CCCc------eeeeecC---CccccccccccccccccccccccchhhHHHHHHHH Confidence 888877543333336632 1122 4665311 111111111110 01 11223344444 Q ss_pred HHHHHhcccchh--hccCCCeEEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCC Q lcl|Aclame:pro 204 ASDIINNQIHPM--FRNDPRLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPEN 281 (341) Q Consensus 204 v~d~~~~li~~~--~r~~~dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~N 281 (341) +..+.. ..-. .......+++|.+.-.. +..++....+.. ++-+...--|.|++.-|+||++.|++-.+++ T Consensus 247 ~~~~~~--~~~~~~~~~~~~~~~vmn~~t~~-~l~~~~~~~~~~-----G~~v~~lp~g~~vv~~~~~p~~~i~fGDfs~ 318 (381) T protein:vir:10 247 FKYHST--NEKGKSVAVKGNVTMVVNPSDAF-EVQAQYTHLNAN-----GVYVTALPFNLNVIESTVQEAGKVLTYVKGL 318 (381) T ss_pred HHhhhh--hhccccccccCceEEEEchhhHH-hhccccccCCCC-----CceeecCCCCceeEEcCCCCcCcEEEEEccc Confidence 333211 1111 11234678888876433 122222111100 0101111126678888999999999999998 Q ss_pred cEEEEecCcEEEEEEEcccccceecc-ccceeeccc--h------heeeeccccccCCcchhcccccCC Q lcl|Aclame:pro 282 LQVLTQHGTAQRKAKHESDRKRSKTH-TGAWKVTQW--V------CWKRSPLTTQKKSTSALNHRSERN 341 (341) Q Consensus 282 LsIY~Q~gs~RR~~~d~~~r~rve~y-~s~YvVEdy--g------~~~~~~~~~~~~~~~a~~~~~~~~ 341 (341) --|.-..| .|-...+ +. ...+ +-+|..--+ | +|...++++. .-+||+-.-+|.- T Consensus 319 Y~i~~r~~-~~i~~~~--~~--~~~~d~~~f~a~~r~dG~~~~~~A~~v~~l~~~-~~~~~~~~~~~~~ 381 (381) T protein:vir:10 319 YDGYLAGG-INVQKFK--ET--LALDDMDLYTAKQFAYGKAKDNKVAAVWKLDLK-GHKPALEDTEETL 381 (381) T ss_pred EEEEEecc-cEEEeec--hh--hhhcCceEEEEEEEEcCEEecCCcEEEEEEeec-CCccccccccccC Confidence 66654444 3221111 11 1111 114444332 2 2333334332 2477887777766 No 100 >protein:vir:962 Length: 397 # NCBI annotation: capsid protein # Family: family:all:21 # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076616;genbank:gi:13095724;genbank:GeneID:920264 Probab=96.72 E-value=0.00013 Score=41.89 Aligned_cols=274 Identities=9% Similarity=0.050 Sum_probs=138.4 Q ss_pred CCccccHHHHHHHHHHHHHHHH--hhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeeccccccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAK--SYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLY 78 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~--~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~i 78 (341) .........+..+..+...... ..+.......+.|-+...+.+.+ ..+.+..++.+++++++...|.......++.. T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~i~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (397) T protein:vir:96 108 VTEEELAEKRSAINAFVKSKGAEKRDGFTSVEGGALIPQELLQPQLE-PKDIVDLSKYVRSVPVNSASGKFPVISKSGSK 186 (397) T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHHHHHHH-hhhhhhHHHhhhhccccccceeEEEEeccCCc Confidence 1111223344555555543321 12233444566677777888877 46677789999999998888876655444333 Q ss_pred CCCCCC-Cccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcccccccc Q lcl|Aclame:pro 79 TGRKAG-GRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEAD 155 (341) Q Consensus 79 agrt~t-~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~ 155 (341) ++-... +..+ ..+.++...+.+++.---+.++.++|+... ++++..+.+.+.+.++.-.-.--++|+..+.. T Consensus 187 ~~~~~E~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~ell~ds~-----~~l~~~i~~~l~~~~~~~~~~~i~~g~g~~~~ 261 (397) T protein:vir:96 187 MATVQQLEKNPQLANPKMVEIDYSVATRRGYIPISQEMIDDAS-----YDVTGLIADEIQDQSLNTKNADIAAVLKTATA 261 (397) T ss_pred cccccccccccccccccccceeecHhHhhcchhhHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHhhccccccc Confidence 332221 1122 123444445555443333455666666543 57888888888888776544434444331110 Q ss_pred CChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHH Q lcl|Aclame:pro 156 TDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQ 235 (341) Q Consensus 156 TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~ 235 (341) + +... .|.+ .+++...+++.+ .-+++|.+..+. . T Consensus 262 ~------------------------------------~~~~---~d~~-~~~~~~~~~~~~----~a~~v~n~~~~~--~ 295 (397) T protein:vir:96 262 K------------------------------------SVVG---VDGL-KDLINKEIKKVY----DVKLFISASMYS--E 295 (397) T ss_pred c------------------------------------cccc---hHHH-HHHHHHhhhhhc----CcEEEEcHHHHH--H Confidence 0 0112 2322 244555556654 248999998765 3 Q ss_pred hHHH-hccChhHHH-HHHHHHHHhhcCcccccCCcCCCC------CEEEeccCCcEEEEecCcEEEEEEEcccccceecc Q lcl|Aclame:pro 236 AKLY-DKADKPSEQ-IAAQKLDKTIAGRPAYVPPFLPDN------AMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTH 307 (341) Q Consensus 236 ~~l~-n~~~~ptE~-~a~~~i~k~igGlpa~~vPffP~~------~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y 307 (341) +..+ .....|-=. -.......++-|+|++..+..+.+ .+++-.|++....+-++...-...++. .| T Consensus 296 l~~lkd~~G~~~~~~~~~~~~~~~l~G~pv~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~------~~ 369 (397) T protein:vir:96 296 LDKLKDKNGRYLLQDSITAASGKQLLGKEVVVLDDDVIGKSVGNVVGFIGDAKAFASFFDRKQVSVSWVDNN------IY 369 (397) T ss_pred HHHhhccCCCeEeccCccCCCcccccccceEEecccccCCCCCceEEEEeehhcceEeEeecceEEEEeccc------cc Confidence 4433 222222100 000011247899999876654333 278888888644443444443332221 12 Q ss_pred cccee-eccchh--eeeeccccccCCcc Q lcl|Aclame:pro 308 TGAWK-VTQWVC--WKRSPLTTQKKSTS 332 (341) Q Consensus 308 ~s~Yv-VEdyg~--~~~~~~~~~~~~~~ 332 (341) ..++. ++.+|+ .....|..++.+++ T Consensus 370 ~~~~~~~~r~d~~~~~~~a~~~~~~~~a 397 (397) T protein:vir:96 370 GQLLAGIIRYDVKATDKKAGFYVTFTIG 397 (397) T ss_pred ceeEEEEEEEccEEecccceEEEEeecC Confidence 33333 344443 23333555544444 No 101 >protein:vir:1084 Length: 437 # NCBI annotation: capsid protein # Family: family:all:21 # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076738;genbank:gi:13095848;genbank:GeneID:920418 Probab=96.42 E-value=0.00064 Score=38.11 Aligned_cols=280 Identities=8% Similarity=0.020 Sum_probs=126.7 Q ss_pred CCccccHHHHHHHHHHHHHHHH--hhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeeccccccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAK--SYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLY 78 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~--~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~i 78 (341) +..-.....+..|..++..--. ..........|.|-..+...+. .+.+.+.+++.++++++....|.......+++. T Consensus 132 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~lvp~~~~~~i~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (437) T protein:vir:10 132 VGGEIADKKVTAFADYLKTGEVRDVTGIALKDGKVIIPETILTPEK-EVHQFPRLGSLVRTESVTTTTGKLPIFNNSTDL 210 (437) T ss_pred HHHHHHHhhhhhhHHHHHhhhhhhhhhcccccccccchHHHHHHHH-HhhhhhhhhhcceeEeeccCceeeEEeeccccc Confidence 1111112222233333322111 1111222344555444455444 456677788899999988777665444333333 Q ss_pred CCCCCC-Cccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhcccccccc Q lcl|Aclame:pro 79 TGRKAG-GRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEAD 155 (341) Q Consensus 79 agrt~t-~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~ 155 (341) ++-... +..+ ..+.++...+..++.---+.|+.++|+... ++|+..+.+.+.+.++.-.-.-=+||.--+ T Consensus 211 ~~~~~e~~~~~e~~~~~~~~v~~~~~k~~~~~~is~ell~ds~-----~~~~~~i~~~l~~~~~~~~~~~i~~g~g~~-- 283 (437) T protein:vir:10 211 LTAHTEYGQTTKNATPVITPILWDLKTYTGGYVFSQELISDSS-----YDWQAELQSRLIELRDNTDDSLIITALTDG-- 283 (437) T ss_pred cccccccccccccccccceeeeeehhheeeehhhhHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhccc-- Confidence 322221 1111 112344444444443334677777776433 578888888888888754333333442100 Q ss_pred CChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHH Q lcl|Aclame:pro 156 TDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQ 235 (341) Q Consensus 156 TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~ 235 (341) . .+.+ .+.. .|. +.|+++.-+++.|+.+ -+++|.+..+. . T Consensus 284 -----------------------~------~~~~---~~~~---~~~-~~~~~~~~l~~~~~~~--~~~~~~~~~~~--~ 323 (437) T protein:vir:10 284 -----------------------I------KKTT---STYL---LGD-LKKVLNVTLKPQDSAA--ASIVMSQSAYN--L 323 (437) T ss_pred -----------------------c------cccc---cccc---hhh-HHHHHHhhhhhhhhcC--CEEEEcHHHHH--H Confidence 0 0111 1111 222 2334443467888764 38999998765 3 Q ss_pred hHHH-hccChhHHH-HHHHHHHHhhcCcccccCCcC--CCCC-----EEEeccCCcEEEE-ecCcEEEEEEEccccccee Q lcl|Aclame:pro 236 AKLY-DKADKPSEQ-IAAQKLDKTIAGRPAYVPPFL--PDNA-----MVVTIPENLQVLT-QHGTAQRKAKHESDRKRSK 305 (341) Q Consensus 236 ~~l~-n~~~~ptE~-~a~~~i~k~igGlpa~~vPff--P~~~-----ilVT~l~NLsIY~-Q~gs~RR~~~d~~~r~rve 305 (341) +..+ +....|-=. -...-...++-|+|++..+.+ |..+ +++=.|++.-+.+ ..|. + ++..+.++-.. T Consensus 324 l~~lkd~~g~~~~~~~~~~~~~~~l~G~pv~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~r~~~-~--~~~~~~~~~~~ 400 (437) T protein:vir:10 324 FDMATDAMGRPLLQPNVTAATGYTLLGKTVVIVDDKLFPSASAGDVNIVVAPLKKAVINFKLTEI-T--GQFQDTYDIWY 400 (437) T ss_pred HHHhhccCCCeeeccCccCCCCcccccceeEEecccccCCcCCCceEEEEeeccccEEEEeeece-E--EEEeccccccc Confidence 4444 222222100 000011347999999988765 5443 6777777644333 2332 1 11222221111 Q ss_pred ccccceeeccch-------he--eeeccccc--cCCcch Q lcl|Aclame:pro 306 THTGAWKVTQWV-------CW--KRSPLTTQ--KKSTSA 333 (341) Q Consensus 306 ~y~s~YvVEdyg-------~~--~~~~~~~~--~~~~~a 333 (341) .-..+++-++ +| ..+.++.+ ..+++| T Consensus 401 --~~~~~~~r~d~~~~~~~a~~~l~~~~~~~~~~~~~~~ 437 (437) T protein:vir:10 401 --KQLGIFLRQNVVQASKDLIVNLTGKLKAVTVVQSTAV 437 (437) T ss_pred --ceeeEEEEEccEEecccceEEEEeeccccccCCCCCC Confidence 1122223232 22 22333322 223344 No 102 >protein:vir:9759 Length: 303 # NCBI annotation: putative structural protein # Family: family:all:966 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795521;genbank:gi:28876283;genbank:GeneID:1257824 Probab=96.21 E-value=0.00086 Score=37.38 Aligned_cols=282 Identities=10% Similarity=0.021 Sum_probs=143.8 Q ss_pred hCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCCCCCC-Ccc-ccccCCCCcceEEE Q lcl|Aclame:pro 24 YGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTGRKAG-GRF-TKQVGVGGHKYKLA 101 (341) Q Consensus 24 ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iagrt~t-~r~-~r~~~l~~~~Y~c~ 101 (341) .|+... ..+.|-+++.+.+++.+++.|.+++..+++++.--. .++-.-.+++-+.-... +.. ...+.++...+..+ T Consensus 1 m~t~t~-gg~liP~~~~~~ii~~l~~~s~i~~l~~~~~~~~~~-~~ip~~~~~~~a~wv~E~~~~~~s~~~f~~v~l~~~ 78 (303) T protein:vir:97 1 MGTETS-KASLFDKHLVSDLINKVKGHSSLAKLSSQKPIPFNG-SKEFTFTLDSDIDVVAENGKKTHGGLSLEPVTIVPI 78 (303) T ss_pred CcccCC-CCeEcchhHHHHHHHHHHhhchhhhhcceeecCCCc-eEEEEEecCcceEEeecCccccccccceeeEEeeeE Confidence 665543 357799999999999999999999999998876322 23322223333332221 111 22345566666666 Q ss_pred EeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhcc Q lcl|Aclame:pro 102 ETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKAS 181 (341) Q Consensus 102 qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~ 181 (341) +.-.-+.++-+.| ++.....++|.+.+.+.++++++.-+-.-.+||+.-+..+.-. +. ..+.+. T Consensus 79 kl~~~~~iS~ell--~~~~d~~~~l~~~i~~~la~a~~~~ld~a~l~G~~~~~g~~~~--~~----~~~~~~-------- 142 (303) T protein:vir:97 79 KVEYGARLSDEFL--YATEEEKIDILKAFNEGFAKKLARGIDLMAMHGINPRTKKASD--VI----GTNHFD-------- 142 (303) T ss_pred EEEEeehhhHHHh--hcCccchHHHHHHHHHHHHHHHHHHHHhhhhcccccCCccccc--cc----cccccc-------- Confidence 6555555555544 2222234679999999999999988888888996422222211 11 111100 Q ss_pred ccccccceeecCC-chhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHHhccChhHHHHHHH--HHHHhh Q lcl|Aclame:pro 182 QVVDVDVYFDETN-GDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQ--KLDKTI 258 (341) Q Consensus 182 ~v~~~~~~~~g~g-gdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~--~i~k~i 258 (341) ......+..+++ -.|.++.+++.- +.+.+++ +. .++|.+..... ...|-+....|.-.-..+ .-..++ T Consensus 143 -~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~-~~-~~vmn~~~~~~-L~~lkd~~g~~~~~~~~~~~~~~~~l 213 (303) T protein:vir:97 143 -SKVTQVVKFTESEDADANIEAAVNL-----IQGAEGV-VT-GLAMDTEFSTA-LAKVTNGEMGPKMYPELAWGANPDSI 213 (303) T ss_pred -cccccccccccccchHHHHHHHHHH-----HhhcCCC-cc-EEEEcHHHHHH-HHHhhccCCCeEEecCccCCCCCcee Confidence 000111222222 235555544332 2333332 22 48888876652 222322222221000000 001368 Q ss_pred cCcccccCCcCCCCC--------EEEeccCCcEEEEecCcEEEEEEEccccccee-cc---cc-ceeeccc-h--heeee Q lcl|Aclame:pro 259 AGRPAYVPPFLPDNA--------MVVTIPENLQVLTQHGTAQRKAKHESDRKRSK-TH---TG-AWKVTQW-V--CWKRS 322 (341) Q Consensus 259 gGlpa~~vPffP~~~--------ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve-~y---~s-~YvVEdy-g--~~~~~ 322 (341) -|+|++.-.++|... +++=.+++.-.|..++..+-.+-+.-+.+... +| +. +|..|-+ | ..... T Consensus 214 ~G~Pv~~s~~v~~~~~~~~~~~~~~~Gdf~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~n~~~~r~~~r~~~~v~~p~ 293 (303) T protein:vir:97 214 NGLKSSVNTTVGAGADEAESKDLVIIGDFESMFKWGYAKQIPMEIIKYGDPDNSGKDLKGYNQIYLRAEAYIGWGILDAK 293 (303) T ss_pred cceeeEEecccCCccccCCCccEEEEeeccccEEEEEecCcEEEEeeccCCCCcchhhhhcCcEEEEEEEEeccEeeccc Confidence 899999999998753 55666777666666655554444332222211 12 22 5555542 3 22333 Q ss_pred ccccccCCcc Q lcl|Aclame:pro 323 PLTTQKKSTS 332 (341) Q Consensus 323 ~~~~~~~~~~ 332 (341) .|...+.++- T Consensus 294 af~~l~~~~~ 303 (303) T protein:vir:97 294 SFARVTKGEV 303 (303) T ss_pred ceEEeeCCCC Confidence 3433333332 No 103 >protein:vir:78223 Length: 333 # NCBI annotation: Putative major head protein # Family: family:all:966 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491666;genbank:gi:157786490;genbank:GeneID:5625701 Probab=96.15 E-value=0.00094 Score=37.17 Aligned_cols=290 Identities=11% Similarity=0.023 Sum_probs=139.4 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhc-----ceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVA-----ELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS 75 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~-----~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~ 75 (341) |+ + ++.+.. ..-|+.... ....|-+++...+++.+++.|.++++++++++.- .+.++-.-.. T Consensus 1 ~a--~-------l~el~~---~~~~~~~~g~~~~~~~~liP~~~~~~ii~~l~~~s~l~~~~~~~~~~~-~~~~~p~~~~ 67 (333) T protein:vir:78 1 MA--T-------LNELLP---NSAGSNHQGRLAHVPSDLLPKEIVGPIFDKAQESSLVLRMGEQIPISY-GETIIPTTVK 67 (333) T ss_pred Cc--h-------hHHhhh---hcccccccCceecCCccccchhHHHHHHHHHHhhchhhhhcceeeccC-CceEEEEEeC Confidence 32 1 122211 122222111 1125777788999999999999999999998763 2234433333 Q ss_pred cccCCCCCC---------Ccc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHH Q lcl|Aclame:pro 76 GLYTGRKAG---------GRF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRI 145 (341) Q Consensus 76 g~iagrt~t---------~r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~I 145 (341) ++.++-... +.. ...+.++......++.-.-..|+.+.|+. + .++|+..+++.+.+.++.-.--- T Consensus 68 ~~~a~~v~eg~~~~~~e~~~~~~~~~~f~~i~l~~~kl~~~~~is~ell~~-s----~~~~~~~i~~~la~ai~~~~d~~ 142 (333) T protein:vir:78 68 RPEVGQVGVGTSNEQREGGLKPLSGTAWDTRSVSPIKLATIVTVSEEFARM-N----PSGLYTKLQGDLAYAIGRGIDLA 142 (333) T ss_pred CceeEeecCcccccccccccccccccceeEEEEeeEEEEEeehhhHHHHhc-C----HHHHHHHHHHHHHHHHHHHHHHH Confidence 333322111 111 12234455555556655557777766641 1 25799999999999999988888 Q ss_pred hhccccccccCChhhccchhhhhhhHHHHHHHhhccccccc-cceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEE Q lcl|Aclame:pro 146 GWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDV-DVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTV 224 (341) Q Consensus 146 GfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~-~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVv 224 (341) .+||+-....+- |. |.+. ..-+.+. .....+.+++ ..+|.+ .+++..+.....++ .-++ T Consensus 143 ~l~G~g~~~~~~----~~------g~~~------~~~~~~~~~~~~~~~~~~-~~~~~i-~~~~~~~~~~~~~~--~~~~ 202 (333) T protein:vir:78 143 VFHGKSPLTGSA----LQ------GIDT------DNVIANTTNVDYLQETGD-PLLDRL-LDGYDLVSANTDVE--FNGW 202 (333) T ss_pred HhcccCCCCCcc----cc------cccc------cccccccccccccccccc-hhHHHH-HHHHHhhccccccC--ceEE Confidence 889865433322 21 1111 0000000 1111122332 234432 33333332222222 2267 Q ss_pred EeChHHHHHH-HhHHH-hccChhHHHHHHHHH----HHhhcCcccccCCcCCCC---------CEEEeccCCcEEEEecC Q lcl|Aclame:pro 225 FVGSGLIGAA-QAKLY-DKADKPSEQIAAQKL----DKTIAGRPAYVPPFLPDN---------AMVVTIPENLQVLTQHG 289 (341) Q Consensus 225 ivG~dLla~~-~~~l~-n~~~~ptE~~a~~~i----~k~igGlpa~~vPffP~~---------~ilVT~l~NLsIY~Q~g 289 (341) +|.+...+.- ....+ +....| +....+ ..++-|+|++..+++|++ .+++..+++.-|....+ T Consensus 203 vmn~~~~~~L~~~~~~~d~~G~~---i~~~~~~~~~~~~l~G~Pv~~~~~i~~~~~~~~~~~~~~~~gD~~~~~~g~~~~ 279 (333) T protein:vir:78 203 AVDPRFRAHLLRAQAYRDANGNV---DPSRINLAAQTGDVLGLPAQFGRAVGGDLGAAVDSKTRIIGGDFSQLKFGFADE 279 (333) T ss_pred EEcchHHHHHHHHhhhcCCCCce---eecCccccCCCceeeceeeEEccccCCCccccCCCccEEEEEecccEEEEEeec Confidence 7777653321 11111 111111 000001 247889999999999976 48889999977665544 Q ss_pred cEEEEEEEcc-----cccceecccc---ceeeccc-h--heeeeccccccCC-cc Q lcl|Aclame:pro 290 TAQRKAKHES-----DRKRSKTHTG---AWKVTQW-V--CWKRSPLTTQKKS-TS 332 (341) Q Consensus 290 s~RR~~~d~~-----~r~rve~y~s---~YvVEdy-g--~~~~~~~~~~~~~-~~ 332 (341) .+-.+.++- .-..+-.|+. +|.+|-| | ......|...+.+ +| T Consensus 280 -~~i~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~r~d~~v~~~~a~~~l~~~~a~ 333 (333) T protein:vir:78 280 -IRIKMSDTATLTDSGSATVSMWQTNQIAILIEVTFGWLLGDKQAFVKFVDDEQP 333 (333) T ss_pred -cEEEEeccccccccccceeehhhcCcEEEEEEEEEccEEecccceEEEeccCCC Confidence 322222221 1111111211 4444443 2 2222234333333 33 No 104 >protein:vir:101607 Length: 379 # NCBI annotation: major capsid protein precursor # Family: family:all:585 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112497;genbank:gi:53793597;uniprot:Q5ZGF6;genbank:GeneID:3101715 Probab=96.09 E-value=0.001 Score=36.98 Aligned_cols=279 Identities=10% Similarity=-0.003 Sum_probs=124.9 Q ss_pred CCccccHHHHHHHHHH---HHH-------HHHhhC--chhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNF---AQQ-------LAKSYG--VSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQ 68 (341) Q Consensus 1 m~~~M~~~tr~~~~~y---~~~-------~A~~ng--v~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge 68 (341) .....+. ....+... ..+ .....| .......+.|-+.....+...+.+.+.+++.++++++..-... T Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~ii~~~~~~~~i~~~~~~~~~~~~~~~ 152 (379) T protein:vir:10 74 SEDKSDS-LVKSITENFNDIKEVRNGKSIQVKAVGDMTLPVNLTGAQPKDYNFDVVLNPSQMLNVSDIVGAVSISGGTYT 152 (379) T ss_pred ccccchh-HHHHHHHHHHhHHHHHhhhhhhhhhhcccccCCCCccccchhhhhHHHHhHHhhhhHHhhceeeeccCCceE Confidence 1100110 00111100 000 001111 1111223346666777888888889999999999887644333 Q ss_pred eeec-ccccccCCCCCC-Cccc-cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHh--hhHH Q lcl|Aclame:pro 69 VVDV-GVSGLYTGRKAG-GRFT-KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFA--LDIM 143 (341) Q Consensus 69 ~i~l-gv~g~iagrt~t-~r~~-r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~a--lD~i 143 (341) .... |.++.-.+-... +..+ ..+.++...|..++.---+.|+-++|+ + .|.++..+.+.+.+.++ +|.- T Consensus 153 ~~~~~~~~~~~~~~v~Eg~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~---D---~~~l~~~i~~~la~~~~~~~~~~ 226 (379) T protein:vir:10 153 FVRENGAGEGAIGAQVEGATKGQKDYDISMIDVNTDFIAGFTRYSKKMAN---N---LPFLTSFIPNALRRDYAKAENAA 226 (379) T ss_pred EEEeecCCCcccccccCCccccccccceeeeEeeeeeEEeeehhhHHHHh---h---HHHHHHHHHHHHHHHHHHHHHHH Confidence 3211 222211111111 1111 123444455555544333555555544 3 25688888887777665 3444 Q ss_pred HHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeE Q lcl|Aclame:pro 144 RIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLT 223 (341) Q Consensus 144 ~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLV 223 (341) .+|-.|+.. + .+.. +...+..+|.++ +++..+.+..++.+ + T Consensus 227 ~~~g~~~~~---------------------------~-----~~~~---~~~~~~~~d~i~-~~~~~~~~~~~~~~---~ 267 (379) T protein:vir:10 227 FNAVLAANA---------------------------T-----ASTE---IITNKNKVEMLI-NEIAKQENLDFPVT---A 267 (379) T ss_pred Hhccccccc---------------------------c-----cccc---cccCcccHHHHH-HHHHhhhhccCCCC---E Confidence 444333210 0 0001 111223355443 44444544444333 5 Q ss_pred EEeChHHHHHHHhHHHh-ccChhHHH--HHHH-HHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEc- Q lcl|Aclame:pro 224 VFVGSGLIGAAQAKLYD-KADKPSEQ--IAAQ-KLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHE- 298 (341) Q Consensus 224 vivG~dLla~~~~~l~n-~~~~ptE~--~a~~-~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~- 298 (341) ++|.+.-+. .+..+- ....|--. ..++ --..++-|+|++.-|.+|++.+++=.++...+-+.+|..-....+. T Consensus 268 ~vmn~~~~~--~l~~lkd~~G~~l~~~~~~~~~~~~~~l~G~pvv~s~~~~ag~~~~gdf~~~~~~~~~~~~i~~~~~~~ 345 (379) T protein:vir:10 268 IVLRPTDYY--DILVTQKSVGAGYGLPGVVTQDNGVLRINGIPLFRATWLAANKYYVGDWTRVTKVTTEGLSLEFSEVEG 345 (379) T ss_pred EEEcHHHHH--HHHHhhccCCceeccCCccCCCCCcceecceeeEecCCCCCCceEEeecccEEEEEEeceEEEEeeccc Confidence 778876443 233331 11121000 0000 0113788999999999999999998888865555444321111111 Q ss_pred --ccccceecc-c--cceeeccchheeeeccccc Q lcl|Aclame:pro 299 --SDRKRSKTH-T--GAWKVTQWVCWKRSPLTTQ 327 (341) Q Consensus 299 --~~r~rve~y-~--s~YvVEdyg~~~~~~~~~~ 327 (341) -.+|.+.-. + -++.|=|-.+|..++++-+ T Consensus 346 ~~f~~~~~~~r~~~R~~~~v~~p~a~v~~~~~~~ 379 (379) T protein:vir:10 346 TNFVKNNITARIEAQVALAVEQPAALIFGDFTAV 379 (379) T ss_pred ccccCCcEEEEEEEEeccEEecCccEEEEEecCC Confidence 122222211 0 1333333344555555555 No 105 >protein:vir:1433 Length: 435 # NCBI annotation: putative major capsid protein # Family: family:all:21 # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536362;genbank:gi:17975167;genbank:GeneID:929171 Probab=96.01 E-value=0.0011 Score=36.75 Aligned_cols=299 Identities=11% Similarity=0.024 Sum_probs=137.5 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhC------------------------chhhcceeecChHHHHHHHHHHHhhHHHhcc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYG------------------------VSNVAELFNVSPQLETKLRAAITESAEFLKM 56 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ng------------------------v~~~~~~Fsv~P~~~q~L~~~iqess~FL~~ 56 (341) .. .+. .-...|..|+..++..-| .....-.+.|-+.+.+.+.+.+++.+.+++. T Consensus 88 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~gg~~vP~~~~~~ii~~l~~~~~i~~~ 165 (435) T protein:vir:14 88 PK-ALE-VKGAKMARMVRALAAARGDAQLASKLAIERGFGEEVAMSLNTLSPGAGGVLVPENLSSEVIELLRPKSVVRKL 165 (435) T ss_pred cc-hhh-hhHHHHHHHHHHHHhhcchhhHHHHHHHhhhhhhhhhhhcccCCcCCCccccchhHHHHHHHHHhhhchhhhh Confidence 00 000 111222333322221111 1111123455556678899999988877764 Q ss_pred -cceecchhhccce-eecccccccCCCCCC-C-ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHH Q lcl|Aclame:pro 57 -ITVTTVDQIEGQV-VDVGVSGLYTGRKAG-G-RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTE 132 (341) Q Consensus 57 -Inv~~V~~~~Ge~-i~lgv~g~iagrt~t-~-r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~ 132 (341) .++++.. .|.. +-.-.+++-++-... + .....+.++...|.+++.---+.|+.+.|+.-+- .|.++..+.+ T Consensus 166 ~~~~~~~~--~~~~~~p~~~~~~~a~~v~E~~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~ds~~---~~~l~~~i~~ 240 (435) T protein:vir:14 166 GARTLPLS--NGNITIPRLKGGAIVGYIGADTDIPTTQQQFDDLKLTAKKMAALVPIANDLIKYAGV---NPNVDQIVVG 240 (435) T ss_pred cceeeecC--CCceEEEEEeCCcceeeeccCccccccccceeEEEeeeEEEEEeehhhHHHHHhhcc---CHHHHHHHHH Confidence 3444443 3321 111112222222211 1 1122345667778887777778888887776442 3679999999 Q ss_pred HHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhccc Q lcl|Aclame:pro 133 FSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQI 212 (341) Q Consensus 133 ~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li 212 (341) .+.++++.-.-.--++|+-.+. +| +|++... .+ ...+..-.++.+..+.+.+.+++..+ T Consensus 241 ~l~~ai~~~~d~a~l~G~G~~~------~p------~Gi~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~- 299 (435) T protein:vir:14 241 DLTAAIGAREDKAFIRDDGTAN------TP------KGLRFWA---LP-----SNVITASDASTLQKIETDLGKVILAL- 299 (435) T ss_pred HHHHHHHHHHHHHhhccCCCCc------cc------cceeecc---cc-----cceeccccccchhhHHHHHHHHHHHh- Confidence 9999988665555567743111 12 2554210 01 11111111222222222233333222 Q ss_pred chhhccCCCeEEEeChHHHHHHHhHHHhccC-hhHHHHHHHHHHHhhcCcccccCCcCCCC--------CEEEeccCCcE Q lcl|Aclame:pro 213 HPMFRNDPRLTVFVGSGLIGAAQAKLYDKAD-KPSEQIAAQKLDKTIAGRPAYVPPFLPDN--------AMVVTIPENLQ 283 (341) Q Consensus 213 ~~~~r~~~dLVvivG~dLla~~~~~l~n~~~-~ptE~~a~~~i~k~igGlpa~~vPffP~~--------~ilVT~l~NLs 283 (341) ..........+++|.+..++ .+..+.-.+ .|- --+.-..++-|+|++..+++|.+ .+++-.++..- T Consensus 300 ~~~~~~~~~~~~v~n~~~~~--~L~~lkd~~G~~l---~~~~~~g~l~G~Pv~~~~~~p~~~~~~~~~~~i~~gd~s~~~ 374 (435) T protein:vir:14 300 ENADANLTQPGWIMAPRTFR--FLEGLRDGNGNKV---YPELANGMLKGYPVGKTTQVPINLGETGKESEIYFTDFGDVF 374 (435) T ss_pred hhccccccCCEEEEcHHHHH--HHHHhhccCCcee---ccCCCCCeeecceeEeeccccccccCCCccceEEEeecccEE Confidence 11111223468999998765 344443222 220 00011357889999999999985 58888887744 Q ss_pred EEEecCcEEEEEEEccccc-----ceecc--cc-ceeeccc-hhee--eeccccccCC-cch Q lcl|Aclame:pro 284 VLTQHGTAQRKAKHESDRK-----RSKTH--TG-AWKVTQW-VCWK--RSPLTTQKKS-TSA 333 (341) Q Consensus 284 IY~Q~gs~RR~~~d~~~r~-----rve~y--~s-~YvVEdy-g~~~--~~~~~~~~~~-~~a 333 (341) | ..++..+-.+.++.... .+-.| +. +|.++.+ ++.. ...|...... -+| T Consensus 375 i-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~r~~~r~d~~~~~~~a~~~l~~~~~~~ 435 (435) T protein:vir:14 375 I-GEEETLEIDYSKEATYKDADGHMVSAFQRDQTLIRVIAKNDFGPRHVESIAVLAGVAWGA 435 (435) T ss_pred E-EEecccEEEEeccccccccccchhhhhhcChhheeeeeeeCceeecccceEEEecCCCCC Confidence 3 34444444433332111 11112 11 5555443 3221 1122222221 233 No 106 >protein:vir:78350 Length: 383 # NCBI annotation: Cps # Family: family:all:635 # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468644;genbank:gi:157325222;genbank:GeneID:5601696 Probab=95.85 E-value=0.0014 Score=36.29 Aligned_cols=289 Identities=11% Similarity=0.024 Sum_probs=135.5 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) +-..+.++.|+.|+++... ......|.|-+++..++.+.+.+.|.+++.++++++.- +.++-...+++.++ T Consensus 68 g~~~lt~~e~~~~~~~~~~-------~~~~gg~lvP~~~~~~I~~~l~~~s~l~~~~~v~~~~~--~~~i~~~~~~~~a~ 138 (383) T protein:vir:78 68 TDKNITNEEIKFFNDINKE-------VGYKEETLLPQTVVDEIFEDLTTEHPFLASIGMRTTGL--RTKFLKSETSGVAV 138 (383) T ss_pred ChhhhhHHHHHHHHHHhcc-------CCCCCccccCHHHHHHHHHHHHhhccceeeeeeEecCC--ceEEEEEcCCcceE Confidence 1112334444444433211 12234577888899999999999999999999888742 22344433333332 Q ss_pred CCCC--Cc-cccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 81 RKAG--GR-FTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 81 rt~t--~r-~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) =... ++ ....+.++...+.+++.=--+.|+.++|+.= ..+++..+++.+.+++|.=.-.--++|+- T Consensus 139 w~~e~~~~~~~~~~~f~~i~l~~~kl~~~i~is~ell~Ds-----~~~ie~~i~~~l~~~~a~~~~~a~i~G~G------ 207 (383) T protein:vir:78 139 WGKIFGEIKGQLDATFSDEESIQNKLTAFVVVPKDLEKFG-----PAWVKRFVVTQIEEAFAVALESAYIVGDG------ 207 (383) T ss_pred EeecccccccccCcceeeEeecceeeEeeccchHHHhhcc-----HHHHHHHHHHHHHHHHHHHHhhheEeccC------ Confidence 2111 11 1122334444444444433477888877632 23688888898888888655555556732 Q ss_pred hhhccchhhhhhhHHHHHHHhhcccccccccee----ec--CCchhhhHHHHHHHHHhccc----chhhccCCCeEEEeC Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDVDVYF----DE--TNGDYRTLDAMASDIINNQI----HPMFRNDPRLTVFVG 227 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~----~g--~ggdy~nLDalv~d~~~~li----~~~~r~~~dLVvivG 227 (341) +.. -+|+|..+ +.......+... .+ +..+..++-.++..+.+..- ....+-.+.++++|+ T Consensus 208 -~~q------P~Gil~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~n 277 (383) T protein:vir:78 208 -NDK------PIGLNRKV---GKGSTVVDGVYAEKAATGTLTFANPKTTVNELTDVYKYHSVKENGHPLNVAGKVTLLVN 277 (383) T ss_pred -CCC------ceeeeecc---CCcccccccccccccccchhhhhhhHHHHHHHHHHHhccchhcccchhhhcCceEEEEc Confidence 111 23555311 000111111111 11 11122222222222221110 011122356788888 Q ss_pred hHHHHHHHhHHHh---ccChhHHHHHHHHHHHhhc--CcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEccccc Q lcl|Aclame:pro 228 SGLIGAAQAKLYD---KADKPSEQIAAQKLDKTIA--GRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRK 302 (341) Q Consensus 228 ~dLla~~~~~l~n---~~~~ptE~~a~~~i~k~ig--Glpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~ 302 (341) +.-..+ -.|.+. +...| -++- |++.+.-+++|++.++.-.++.--|.. ++..|-...+ +.- T Consensus 278 ~~~~~~-~~~~~~~~~~~G~~----------~t~l~~~~~iv~s~~~p~~~iifgdfs~Y~i~~-r~~~~i~~~~--~~~ 343 (383) T protein:vir:78 278 PTDAWD-VKKQYTSLNANGVY----------VTALPFNLNIIESLFVPEKKAISYVAERYDALI-GGPLDIGTYD--QTL 343 (383) T ss_pred Ccchhh-hccchhccCCCCce----------eeecCCCceEEecCCCCcccEEEeeccceEEEe-cccceEEecc--hhh Confidence 732111 122221 11111 1222 344666799999999999998865544 3344432211 111 Q ss_pred ceeccccceeeccc--------hheeeecccc-ccCCcchh Q lcl|Aclame:pro 303 RSKTHTGAWKVTQW--------VCWKRSPLTT-QKKSTSAL 334 (341) Q Consensus 303 rve~y~s~YvVEdy--------g~~~~~~~~~-~~~~~~a~ 334 (341) +..-+-+|+.=-+ .+|...++++ .+..+||- T Consensus 344 -f~~d~~~f~~~~r~dG~~~~~~A~~vl~~~~~~~~~~~~~ 383 (383) T protein:vir:78 344 -AIEDLNLYAAKQFAYGKAKDDKAAAVWTLNINPAEQTPEG 383 (383) T ss_pred -hhcCceEEEEEEEEcCEEecCCeEEEEEEEecCCCCCCCC Confidence 1111224443222 2444445443 22335665 No 107 >protein:vir:9309 Length: 324 # NCBI annotation: head protein # Family: family:all:507 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803287;genbank:gi:29028597;genbank:GeneID:1258044 Probab=95.75 E-value=0.0015 Score=36.04 Aligned_cols=296 Identities=10% Similarity=0.037 Sum_probs=142.7 Q ss_pred ccHHHHHH--HHHHHHH---HHHhh--Cch-hhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeeccccc Q lcl|Aclame:pro 5 LTQSAREY--MDNFAQQ---LAKSY--GVS-NVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSG 76 (341) Q Consensus 5 M~~~tr~~--~~~y~~~---~A~~n--gv~-~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g 76 (341) |++.-... +..|... ....+ .+. .......|-+.+...+++.+++.|.+++..+++++.-.. -++-.-.++ T Consensus 1 ~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~~~~~~liP~~~~~~ii~~~~~~s~l~~l~~~~~~~~~~-~~ip~~~~~ 79 (324) T protein:vir:93 1 MEQTQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLLNDFTTPILQEVMENSKIMQLGKYEPMEGTE-KKFTFWADK 79 (324) T ss_pred CchhHHHHHHHHHHHHhhhhhhhcccccccccCCCcceechhHHHHHHHHHHhhchhhhhcceeeccCCc-eEEEEEecC Confidence 33322222 2233322 22221 111 112344677889999999999999999999988866322 122222223 Q ss_pred ccCCCCCC-C-ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccc Q lcl|Aclame:pro 77 LYTGRKAG-G-RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEA 154 (341) Q Consensus 77 ~iagrt~t-~-r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~ 154 (341) +.++-... + .....+.++...+..++.---+.|+.+.|+... ++|...+.+.+.++++.-.-.--++|.- T Consensus 80 ~~a~~v~Eg~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~ds~-----~~l~~~i~~~l~~aia~~~d~a~l~G~g--- 151 (324) T protein:vir:93 80 PGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTY-----SQFFEEMKPMIAEAFYKKFDEAGILNQG--- 151 (324) T ss_pred cceeeecCCccccccccceeEEEEEeEEEEEeehhhHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHHhcCCC--- Confidence 33322211 1 112234567777888887777788877777543 6899999999999988776666678832 Q ss_pred cCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHH Q lcl|Aclame:pro 155 DTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAA 234 (341) Q Consensus 155 ~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~ 234 (341) ++....-.+..+ ........+.-.|..| .+++.. |++.+++. + +++|.+..+. T Consensus 152 -~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~i----~~~~~~-l~~~~~~~-~-~~v~n~~~~~-- 204 (324) T protein:vir:93 152 -NNPFGKSIAQSI-----------------EKTNKVIKGDFTQDNI----IDLEAL-LEDDELEA-N-AFISKTQNRS-- 204 (324) T ss_pred -CCCcCccccccc-----------------cccceeccccccHHHH----HHHHHh-hhhccCCC-C-EEEEcHHHHH-- Confidence 111000001100 0011111122234333 344443 34545443 2 6888888755 Q ss_pred HhH-HHhccChhHHHHHHHHHHHhhcCcccccCCc--CCCCCEEEeccCCcEEEEecCcEEEEEEEcc--------cccc Q lcl|Aclame:pro 235 QAK-LYDKADKPSEQIAAQKLDKTIAGRPAYVPPF--LPDNAMVVTIPENLQVLTQHGTAQRKAKHES--------DRKR 303 (341) Q Consensus 235 ~~~-l~n~~~~ptE~~a~~~i~k~igGlpa~~vPf--fP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~--------~r~r 303 (341) .++ +-+....|- + ...-..++-|+|++..|. .+.+.+++-.++++- |...+..+-.+.++. +... T Consensus 205 ~L~~l~d~~G~~~--~-~~~~~~~l~G~PVv~~~~~~~~~~~i~~gdfs~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~ 280 (324) T protein:vir:93 205 LLRKIVDPETKER--I-YDRNSDSLDGLPVVNLKSSNLKRGELITGDFDKLI-YGIPQLIEYKIDETAQLSTVKNEDGTP 280 (324) T ss_pred HHHHhhCCCCCee--e-cCCCCCcccceeeEeecCCCCCcceEEEEecceEE-EEEecCcEEEEeecccccccccccccc Confidence 233 322222221 0 011135789999987665 555668889998874 444444433333332 1112 Q ss_pred eeccc--c-ceeeccc-hhee--eeccccccCCcchhc-ccccC Q lcl|Aclame:pro 304 SKTHT--G-AWKVTQW-VCWK--RSPLTTQKKSTSALN-HRSER 340 (341) Q Consensus 304 ve~y~--s-~YvVEdy-g~~~--~~~~~~~~~~~~a~~-~~~~~ 340 (341) +.-|+ . ++.+|-+ |+.. ...|...+.+++-.. --+|- T Consensus 281 ~~~f~~n~~~~r~~~r~d~~v~~~~a~~~l~~a~~~~~~~~~~~ 324 (324) T protein:vir:93 281 VNLFEQDMVALRATMHVALHIADDKAFAKLVPADKRTDSVPGEV 324 (324) T ss_pred hhhhhcCcEEEEEEEEeccEEecccceEEEecccccCCCCCCCC Confidence 21121 1 3333332 2211 111222221111110 11111 No 108 >protein:vir:96762 Length: 632 # NCBI annotation: putative phage-related protein # Family: family:all:21 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039818;genbank:gi:126010917;genbank:GeneID:5076272 Probab=95.56 E-value=0.0018 Score=35.59 Aligned_cols=287 Identities=12% Similarity=0.123 Sum_probs=137.3 Q ss_pred CCccccHHHH---------HHH-HHHHHHHHHhhCch--------------------hhcceeecChHH-HHHHHHHHHh Q lcl|Aclame:pro 1 MSQILTQSAR---------EYM-DNFAQQLAKSYGVS--------------------NVAELFNVSPQL-ETKLRAAITE 49 (341) Q Consensus 1 m~~~M~~~tr---------~~~-~~y~~~~A~~ngv~--------------------~~~~~Fsv~P~~-~q~L~~~iqe 49 (341) ++..|.+..+ ..+ ..+...+++..|.+ ..+-.+.|-|++ .+.+++.+.+ T Consensus 305 ~~~~l~rai~a~a~~~~~~a~~~~e~a~~~a~~~G~~arg~~~~~~~l~~ra~~~~t~~~gg~lvp~~~~~~~iie~lr~ 384 (632) T protein:vir:96 305 QQYSLMRAINAAATGDWSKAGFEREVSLAIADASGKEARGFYMPHEVLVQRQLEKKTAGKGGELVATELLSEEFIDILRN 384 (632) T ss_pred HHHHHHHHHHhhhccchhhhhhhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhcccccccccccccccchHHHHHHHhh Confidence 1100100000 001 11122233332211 112234455554 5789999988 Q ss_pred hHHHhcccceecchhhccce-eecccccccCCCCCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhH Q lcl|Aclame:pro 50 SAEFLKMITVTTVDQIEGQV-VDVGVSGLYTGRKAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQF 126 (341) Q Consensus 50 ss~FL~~Inv~~V~~~~Ge~-i~lgv~g~iagrt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF 126 (341) ++-+.+ +.+-.++-..|.. +-.-.+++-++=...+ .....+.++...+..++.---+.|+-++|+.- .+++ T Consensus 385 ~s~i~~-l~~~~~~~~~g~~~ip~~~~~~~a~wv~E~~~~~~s~~~f~~i~l~~~k~~~~v~iS~ell~ds-----~~~~ 458 (632) T protein:vir:96 385 KAIIGQ-MGARMLPGLVGDVDIPKKTSGANFYWIGEDEDVQDSDFDFTTLSFSPKTIAGAVPVTRKLRKQS-----SIHV 458 (632) T ss_pred cchhhh-hcceEeecCCcceEEEEEeCCceeEeecCCccccccccceeeEEeeeeEEEEehhhHHHHHhcc-----chHH Confidence 776544 3332233223331 1111122222211111 11122355666666666444455665666532 3789 Q ss_pred HHHHHHHHHHHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHH Q lcl|Aclame:pro 127 MKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASD 206 (341) Q Consensus 127 ~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d 206 (341) +..+++.+...++.-.-.-.++|+-.+. +|. |.+.. +. + ........+-+|..+..|... T Consensus 459 ~~~i~~~l~~a~~~~~d~a~l~G~G~~~------~p~------Gi~~~----~~--~--~~~~~~~~~~~~~~i~~~~~~ 518 (632) T protein:vir:96 459 ENLIREDLIEGIGVALDLAMLTGTGLAN------DPV------GLLNM----TG--V--PALTYPAGGVDWASVVDMETK 518 (632) T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCC------ccc------eeeec----cc--c--cceecccccCCHHHHHHHHHH Confidence 9999999999998655555567743211 232 33320 00 0 001112334567666555432 Q ss_pred HHhcccchhhccCCCeEEEeChHHHHHHHh-HHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEE Q lcl|Aclame:pro 207 IINNQIHPMFRNDPRLTVFVGSGLIGAAQA-KLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVL 285 (341) Q Consensus 207 ~~~~li~~~~r~~~dLVvivG~dLla~~~~-~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY 285 (341) |...+.+.+..+++|.......-.. .|......| +- -..++-|+|++.-.++|++.+++-.++.+-|. T Consensus 519 -----i~~~~~~~~~~~~~~~~~~~~~l~~~~l~d~~G~~---i~---~~~~l~G~pv~~s~~ip~~~~~~gd~s~~~i~ 587 (632) T protein:vir:96 519 -----ISTFNADAGRLAYLTSVTQRGAAKKAQVFDNTGER---IW---QNNEVNGYRAEASNQIPADTWIFGDWSQIVIA 587 (632) T ss_pred -----HhhcccccCccEEEEchhHHHHHHHHhccCCCCce---ee---cCCeecccceEeccccccCcEEEeecceEEEE Confidence 3445556667899999765442221 122222222 00 02478899999999999999999999987554 Q ss_pred EecCcEEEEEEEcccccceecccc---ceee-ccc--hheeeeccccccCCc Q lcl|Aclame:pro 286 TQHGTAQRKAKHESDRKRSKTHTG---AWKV-TQW--VCWKRSPLTTQKKST 331 (341) Q Consensus 286 ~Q~gs~RR~~~d~~~r~rve~y~s---~YvV-Edy--g~~~~~~~~~~~~~~ 331 (341) .. |..+-.+ ++. ..+.+ .|.+ +++ +......|...+.+. T Consensus 588 ~~-~~~~i~~--~~~----~~~~~~~v~~~~~~~~d~~v~~~~af~~~k~~A 632 (632) T protein:vir:96 588 MW-GVLDLKV--DPY----TKAASDGLVLRVFQDVDAGVRRKEAFCIAKKGA 632 (632) T ss_pred Ee-cceEEEE--ccc----cccccCceEEEEEeecCceeechhhhhheeecC Confidence 43 4443322 121 11111 3333 333 344444566554444 No 109 >protein:vir:1383 Length: 421 # NCBI annotation: major capsid protein # Family: family:all:21 # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612835;genbank:gi:20065969;genbank:GeneID:935826 Probab=95.54 E-value=0.0019 Score=35.53 Aligned_cols=288 Identities=14% Similarity=0.059 Sum_probs=130.3 Q ss_pred CCccccHHHHHHHHHHHHHH----HHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeeccccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQL----AKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSG 76 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~----A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g 76 (341) ..+..+..-+..|..++... ....++....-.+.|-+.+...+++.+++.+.+++.++++++..-.+...-. ..+ T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~t~~~gg~liP~~~~~~Ii~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~ 166 (421) T protein:vir:13 88 SKEEKRSLQLSAMSKTIRGIQLSEEERDIMSSTNNGAVIPQEFVNEFEKLKEGYPSLKEHCHVIPVNRNAGKMPVR-AGA 166 (421) T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHhhccccCCcceecchhhHHHHHHHHHhhhhhhhhceeeeccCCceEEEEe-ecC Confidence 11111222222333333211 1222333334456676677788999999999999999999988766644322 112 Q ss_pred ccC--CCCCCC-ccc-cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccc Q lcl|Aclame:pro 77 LYT--GRKAGG-RFT-KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSA 152 (341) Q Consensus 77 ~ia--grt~t~-r~~-r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~ 152 (341) +.+ +-...+ ..+ ..+.++...+..++.---+.|+.+.|+ .+ .++|+..+.+.+.+++++ -.||. T Consensus 167 ~~~~~~~~~E~~~~~~s~~~f~~i~~~~~k~~~~v~iS~ell~-ds----~~~l~~~i~~~la~~~~~-----~~~~~-- 234 (421) T protein:vir:13 167 SVDKLANLAKDTELVKAMLKTQPMAYDIDDYGLLAPIDNSLLE-DS----EINFLEFVNEEFAEFAVN-----TENAE-- 234 (421) T ss_pred CccceeeccccccccccccceeEEEeeeeeeEeehhhhHHHHh-hh----HHHHHHHHHHHHHHHHHH-----Hhhhh-- Confidence 221 111111 111 123344444444433222344444443 22 367888888888877753 12221 Q ss_pred cccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHH Q lcl|Aclame:pro 153 EADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIG 232 (341) Q Consensus 153 A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla 232 (341) .. ++-+|. + ...+..+|..| .+++..+ ++.++. .-+++|.+.... T Consensus 235 -----i~------~~~~g~------------~-----~~~~~~~~d~i----~~~~~~l-~~~~~~--~a~~v~n~~~~~ 279 (421) T protein:vir:13 235 -----IV------KQAKAV------------L-----AEETINDYAGL----VKTINSL-VPNARK--RAIIVTNSDGRA 279 (421) T ss_pred -----Hh------hhhhhc------------c-----ccccccchHHH----HHHHHHh-hhhhcC--CCEEEEcHHHHH Confidence 00 000121 1 11123344443 3455544 444544 347888887655 Q ss_pred HHHhHHH-hccChhHHHHHHHHHHHhhcCcccccCCcCCCCC-----EEEeccCCcEEEEecCcEEEEEEEcccccceec Q lcl|Aclame:pro 233 AAQAKLY-DKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNA-----MVVTIPENLQVLTQHGTAQRKAKHESDRKRSKT 306 (341) Q Consensus 233 ~~~~~l~-n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~-----ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~ 306 (341) .+..+ .....|-=.-....-..++-|+|++..+++|... +++-.+++.-..+.++..+=...+++. ++. T Consensus 280 --~l~~lkd~~G~~i~~~~~~~~~~tl~G~pV~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~v~~~~~~~---f~~ 354 (421) T protein:vir:13 280 --YLDGLMDKQGRPLLKELSDGGDLVFKGRPVIELEESIFDVGDETKFIVSDFKTLIKFMDRKQYLIDQSKEAG---YTK 354 (421) T ss_pred --HHHHhhcCCCceeecCcCCCCCceecceeeEEeccccccCCCceEEEEEeccccEEEEEecceEEEeecccc---ccc Confidence 33333 2222221000000112479999999999999764 788999985544444555544444432 111 Q ss_pred cccceeeccc-----------hheeeeccc-cccCC-cchhcccccCC Q lcl|Aclame:pro 307 HTGAWKVTQW-----------VCWKRSPLT-TQKKS-TSALNHRSERN 341 (341) Q Consensus 307 y~s~YvVEdy-----------g~~~~~~~~-~~~~~-~~a~~~~~~~~ 341 (341) ..-+|.++.+ .++....+. +++.. +||.--.|-.+ T Consensus 355 ~~~~~r~~~r~d~~~~~~~a~~~~~~~~~~a~v~~~~~~~~~~~~~~~ 402 (421) T protein:vir:13 355 NETIARIIERFDVNSPLDKSSDAEKIRKFGVIVKLQEVLKSSPRSGKN 402 (421) T ss_pred CeeEEEEEeeecceeecchhhheeeecccceeeccccccCCCCcCCCC Confidence 1113333221 111111111 11110 11111111111 No 110 >protein:vir:2344 Length: 397 # NCBI annotation: gp14 # Family: family:all:507 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075281;genbank:gi:12657868;genbank:GeneID:920118 Probab=95.16 E-value=0.0026 Score=34.73 Aligned_cols=290 Identities=8% Similarity=0.036 Sum_probs=142.3 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) |. =+.+.+.. + ..+-...+ -.+-|.+.+.+++.+++.+.+++..+++++.-.. -++-.-..++-+. T Consensus 1 ~g--~~~e~~~~--------~-~~~t~~~~--g~l~~~~~~~ii~~l~~~s~i~~l~~~~~~~~~~-~~ip~~~~~~~a~ 66 (397) T protein:vir:23 1 MG--FSADHSQI--------A-QTKDTMFT--GYLDPVQAKDYFAEAEKTSIVQRVAQKIPMGATG-IVIPHWTGDVSAQ 66 (397) T ss_pred CC--cCHHHHHH--------h-hccCCCCc--cccchhHHHHHHHHHHhccchhhhcceeeccCCc-eEEEEEcCCcceE Confidence 33 33333322 1 11222221 2478899999999999999999999888876322 1222222333333 Q ss_pred CCCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCCh Q lcl|Aclame:pro 81 RKAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDP 158 (341) Q Consensus 81 rt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD~ 158 (341) -...+ .....+.++...|..++.---+.|+.+.|+.= -++|+..+++.+.++++.-.-.--++|.-. + T Consensus 67 wv~Eg~~~~~s~~~f~~v~l~~~k~~~~v~iS~ell~ds-----~~~l~~~i~~~l~~aia~~~d~a~l~G~gt-----~ 136 (397) T protein:vir:23 67 WIGEGDMKPITKGNMTKRDVHPAKIATIFVASAETVRAN-----PANYLGTMRTKVATAIAMAFDNAALHGTNA-----P 136 (397) T ss_pred EecCCccccccccceeEEEEeeEEEEEeehhhHHHHhcc-----hHHHHHHHHHHHHHHHHHHHHHHHhhcccC-----C Confidence 22221 11223456667777777666678887766521 268999999999999999888888898531 1 Q ss_pred hhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHH Q lcl|Aclame:pro 159 SANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKL 238 (341) Q Consensus 159 ~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l 238 (341) .|. .||+... ...........|.. +.+++..|. +.+++ .-+++|.+.... .++. T Consensus 137 --~~~-----~~~~~~~----------~~~~~~~~~~~~~~----~~~~~~~l~-~~~~~--~a~~vmn~~~~~--~L~~ 190 (397) T protein:vir:23 137 --SAF-----QGYLDQS----------NKTQSISPNAYQGL----GVSGLTKLV-TDGKK--WTHTLLDDTVEP--VLNG 190 (397) T ss_pred --ccc-----ccccccc----------cceeeecccchhHH----HHHHHHhhh-hcccC--CCEEEEcHHHHH--HHHH Confidence 111 1222100 01111122222322 223333333 33433 347888887654 2332 Q ss_pred H-hccChhH---HHHHHH---HHHHhhcCcccccCCcCCCCCE--EEeccCCcEEEEecCcEEEEEEEc--------ccc Q lcl|Aclame:pro 239 Y-DKADKPS---EQIAAQ---KLDKTIAGRPAYVPPFLPDNAM--VVTIPENLQVLTQHGTAQRKAKHE--------SDR 301 (341) Q Consensus 239 ~-n~~~~pt---E~~a~~---~i~k~igGlpa~~vPffP~~~i--lVT~l~NLsIY~Q~gs~RR~~~d~--------~~r 301 (341) + .....|- ...... ....++-|+|++..+++|++.+ ++..++++-|....| .+-.+.++ +.. T Consensus 191 lkd~~G~~i~~~~~~~~~~~~~~~~tl~G~Pv~~s~~~~~g~~~~~~gDfs~~~i~~~~~-i~i~~~~e~~~~~~~~~~~ 269 (397) T protein:vir:23 191 SVDANGRPLFVESTYESLTTPFREGRILGRPTILSDHVAEGDVVGYAGDFSQIIWGQVGG-LSFDVTDQATLNLGSQESP 269 (397) T ss_pred hhccCCceeecccccccccccccCceeeeeeEEEeCCCCCCceEEEEeecceEEEEEEec-eEEEEeeeeeeeecccccc Confidence 2 2222221 000000 1124789999999999999986 467888876554444 33222222 222 Q ss_pred cceecccc---ceeeccc-h-------heeeeccccccCC---------------------cchhcccccCC Q lcl|Aclame:pro 302 KRSKTHTG---AWKVTQW-V-------CWKRSPLTTQKKS---------------------TSALNHRSERN 341 (341) Q Consensus 302 ~rve~y~s---~YvVEdy-g-------~~~~~~~~~~~~~---------------------~~a~~~~~~~~ 341 (341) +.+.-|+. +|.++.+ + +|....++....+ ++++.|..--- T Consensus 270 ~~~~lf~~d~v~~ra~~r~d~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 341 (397) T protein:vir:23 270 NFVSLWQHNLVAVRVEAEYGLLINDVNAFVKLTFDPVLTTYALDLDGASAGNFTLSLDGKTSANIAYNASTA 341 (397) T ss_pred ceeeeeeccceeEEEEeeeccceecccceEEEeeccccceeeecccccCcceEEEEecCccccCcccccchh Confidence 22222221 3433332 2 2222222111111 11111110000 No 111 >protein:vir:98635 Length: 377 # NCBI annotation: major coat protein # Family: family:all:635 # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039923;genbank:gi:126011098;genbank:GeneID:4818471 Probab=94.99 E-value=0.003 Score=34.41 Aligned_cols=282 Identities=6% Similarity=-0.021 Sum_probs=138.3 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccccccCC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYTG 80 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~iag 80 (341) ....+.++.|..|+++++. |.++ ...+.|-+++..++.+.+.+.|..++.++++++.- +-++-...+++-++ T Consensus 63 ~~~~lt~ee~~~~~~~~~~-----~~~~-~gg~~vP~~~~~~I~~~l~~~s~i~~~~~v~~~~~--~~~~~~~~~~~~a~ 134 (377) T protein:vir:98 63 KNRELTAEEIKFFNDIDKN-----VGGK-DKFKLLPEETMVQVFDDLVAEHPLLKVINFKNTSL--RLKALTAETSGTAV 134 (377) T ss_pred CCcccCHHHHHHHHHHHhc-----cCCC-CCccccCHHHHHHHHHHHHHhhhhhhheeeEecCc--ceEEEEecCCccee Confidence 4555667777777776543 2222 33567888899999999999999999999887642 22344433333333 Q ss_pred CCCC--Ccc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccCC Q lcl|Aclame:pro 81 RKAG--GRF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTD 157 (341) Q Consensus 81 rt~t--~r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~TD 157 (341) =... ++. ...+.+....+.+++.---+.|+.++|+.=. .++++.+++.+.+++|.=.-.--+||+= T Consensus 135 w~~e~~~~~~~~~~~f~~i~l~~~kl~a~~~is~elL~ds~-----~~ie~~i~~~la~~~a~~~~~a~i~G~G------ 203 (377) T protein:vir:98 135 WGDIFGEIKGQLKQAFKEQDFSQFKLTAFVVIPKDALKFGP-----KWIKQFITEQLKEAIAVALELAIVKGDG------ 203 (377) T ss_pred EeecccccCcccCccceeEeecceeEEeeecccHHhhhccH-----hHHHHHHHHHHHHHHHHHHhhceEeccC------ Confidence 2111 121 1223445555555555555788888886322 3688889999999998766666677732 Q ss_pred hhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhcc------------------- Q lcl|Aclame:pro 158 PSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRN------------------- 218 (341) Q Consensus 158 ~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~------------------- 218 (341) +.- -+|+|..+ +..+. ......++.+.|...|++ .++...+ +..|+. T Consensus 204 -~~q------P~Gil~~~----~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~~~-~~~~~~~a~~~m~~~t~~~~~klkd 269 (377) T protein:vir:98 204 -LLQ------PVGLLKDL----SQPTV-DQSTGRDITTYKTDKEAI-ADLSDLT-PDNAPKKLVPVMKHLSVNDKKRPLK 269 (377) T ss_pred -CCc------ceeeeecc----ccccc-ccccccccccccchhhhH-hhhhhhc-hhHHHHHHHHHHHHHHHHHHhhhhc Confidence 111 23555311 00110 111111223333333322 2222222 222322 Q ss_pred -CCCeEEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcc--cccCCcCCCCCEEEeccCCcEEEEecCcEEEEE Q lcl|Aclame:pro 219 -DPRLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRP--AYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKA 295 (341) Q Consensus 219 -~~dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlp--a~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~ 295 (341) .+..+++|.+.--. +-+|.+...+.+ ++ -.++-|+| ++.-+++|++.+++-.+++-.|+...| .+-.. T Consensus 270 ~~G~~i~~~n~~~~~-~~~p~~~~~~~~-----G~--~~t~lg~p~~vv~s~~~p~~~i~fgdf~~Y~i~~r~~-~~i~~ 340 (377) T protein:vir:98 270 IAGQVKLILNPEDRW-ALEAQFTSRNQF-----GE--YVTVLPHGITILESLAVETGKAIAFVANRYDAFMATA-STIEE 340 (377) T ss_pred cCCceEEEecccchh-hccccccccCCC-----Cc--cccccCCCceEEecCCCCcccEEEEEecceeEEeecc-eEEEe Confidence 33444444332000 001100000000 00 01333445 566789999999999999866655443 22211 Q ss_pred EEcccccceeccccceeecc-c-------hheeeeccccc Q lcl|Aclame:pro 296 KHESDRKRSKTHTGAWKVTQ-W-------VCWKRSPLTTQ 327 (341) Q Consensus 296 ~d~~~r~rve~y~s~YvVEd-y-------g~~~~~~~~~~ 327 (341) . ++.--.+ -+.+|.+=- + .+|...+++.+ T Consensus 341 ~--~~~~~~~-d~~~f~~~~r~dg~~~~~~a~~vl~i~~~ 377 (377) T protein:vir:98 341 Y--DQTFAME-DLQLYLTKNYFYGKAKDNHTAALLTLAGG 377 (377) T ss_pred e--chhhhhc-CceEEEEEEEEcCEEeccCcEEEEEEecC Confidence 1 1111001 122333322 1 23444445555 No 112 >protein:vir:102873 Length: 392 # NCBI annotation: major capsid protein, HK97 family # Family: family:all:21 # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338137;genbank:gi:77020198;genbank:GeneID:3703782 Probab=94.40 E-value=0.0045 Score=33.44 Aligned_cols=282 Identities=12% Similarity=0.094 Sum_probs=135.8 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccce-eecccccccC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQV-VDVGVSGLYT 79 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~-i~lgv~g~ia 79 (341) .+..++...+..........+...+. ...-.+.|-+.....+++.+.+.|.+++.+++++|.-..|.. +....+++-+ T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~t-~~~gg~~vP~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~a 163 (392) T protein:vir:10 85 RNKPLNAEEREFLEDDLEQRAMSGLT-GEDGGLVIPQDIQTQINELARSFDALEQYVTVEPVRTRSGSRVLEKNSDMIPF 163 (392) T ss_pred hcccccHHHHHHHhhhhhhhhccccc-cCCCceecchhHHHHHHHHHHhhhhhhhhceeeeccCCceeEEEEeecCCccc Confidence 11112222233222222222111111 223466787777789999999999999999999998777753 3333334334 Q ss_pred CCCCC-Cccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccC Q lcl|Aclame:pro 80 GRKAG-GRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADT 156 (341) Q Consensus 80 grt~t-~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~T 156 (341) +-... +..+ ..+.++.....+++.---+.|+.+.|+.. .++|...+.+.+.+.++.-.-.--++|...+.. T Consensus 164 ~~v~E~~~~~~~~~~~~~~v~l~~~k~~~~~~iS~ell~ds-----~~~l~~~i~~~l~~~i~~~~d~~~~~g~g~~~~- 237 (392) T protein:vir:10 164 AEITEMGEIPETDNPKFSNVQYAVKDRAGILPLSRSLLQDS-----DQNILKYVTKWLGKKSKVTRNVLILGVIEKLTK- 237 (392) T ss_pred eeecccccccccccccceeEEeeeeeEEEeehhhHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhccccccc- Confidence 33322 2222 12356666777777666677777777653 268999999999988876544333444321110 Q ss_pred ChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHh Q lcl|Aclame:pro 157 DPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQA 236 (341) Q Consensus 157 D~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~ 236 (341) .+...| |.+ -++++..+++.|+. ..+++|.+..++. + T Consensus 238 -----------------------------------~~~~~~---d~i-~~~~~~~l~~~~~~--~a~~vm~~~~~~~--L 274 (392) T protein:vir:10 238 -----------------------------------QAIKSL---DDI-KDVLNVKLDPAISP--NAILLTNQDGFNY--L 274 (392) T ss_pred -----------------------------------cCccCH---HHH-HHHHHHhhhhhhcc--CCEEEEcHHHHHH--H Confidence 112233 332 23343356777764 5789999987553 3 Q ss_pred HHHh-ccChhH-HHHHHHHHHHhhcCcc-cccCCcC-CC------CC--EEEeccCCcEEEEecCcEEEEEEEccc-ccc Q lcl|Aclame:pro 237 KLYD-KADKPS-EQIAAQKLDKTIAGRP-AYVPPFL-PD------NA--MVVTIPENLQVLTQHGTAQRKAKHESD-RKR 303 (341) Q Consensus 237 ~l~n-~~~~pt-E~~a~~~i~k~igGlp-a~~vPff-P~------~~--ilVT~l~NLsIY~Q~gs~RR~~~d~~~-r~r 303 (341) ..+. ....|- .-.....-..++-|.| +++.+.+ |. +. +++=.|++...-..++..+-.+ ++. -+. T Consensus 275 ~~lkd~~G~~l~~~~~~~~~~~tllG~~~v~~~~~~~~~~~~~~~~~~~~~~gdfs~~~~i~~~~~~~~~~--~~~~~~~ 352 (392) T protein:vir:10 275 DKLKDKDGKYILQSDPTQKNKKLFAGTNPVVVVSNRFLKSKGTTAKKAPLIIGDLKEAIVLFKREDMELAS--TDVGGKA 352 (392) T ss_pred HHhhccCCCeEeecCccCCccccccCcccEEEecccccCCCcccCCceEEEEEehhceEEEEeecceEEEE--eccccch Confidence 3331 111110 0000000123566665 4444332 11 11 4555555533222233333222 221 122 Q ss_pred eeccccceeeccc--------hheeeeccccccCC-cchh Q lcl|Aclame:pro 304 SKTHTGAWKVTQW--------VCWKRSPLTTQKKS-TSAL 334 (341) Q Consensus 304 ve~y~s~YvVEdy--------g~~~~~~~~~~~~~-~~a~ 334 (341) ++..+-+|.++-+ .+|....++..+-. +|+= T Consensus 353 f~~~~~~~r~~~r~d~~v~~~~a~~~l~~~~~a~~~~~~~ 392 (392) T protein:vir:10 353 FTRNTLDLRAIQRDDVQMWDNEAAVYGEIDLSAPVEQPQG 392 (392) T ss_pred hhcCceEEEEEEeeccEEecccceEEEEecccccccCCCC Confidence 2222234555442 23333333332222 2333 No 113 >protein:vir:107593 Length: 392 # NCBI annotation: major capsid protein, HK97 family # Family: family:all:21 # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338188;genbank:gi:77020144;genbank:GeneID:3703724 Probab=94.40 E-value=0.0045 Score=33.44 Aligned_cols=282 Identities=12% Similarity=0.094 Sum_probs=135.8 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccce-eecccccccC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQV-VDVGVSGLYT 79 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~-i~lgv~g~ia 79 (341) .+..++...+..........+...+. ...-.+.|-+.....+++.+.+.|.+++.+++++|.-..|.. +....+++-+ T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~t-~~~gg~~vP~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~a 163 (392) T protein:vir:10 85 RNKPLNAEEREFLEDDLEQRAMSGLT-GEDGGLVIPQDIQTQINELARSFDALEQYVTVEPVRTRSGSRVLEKNSDMIPF 163 (392) T ss_pred hcccccHHHHHHHhhhhhhhhccccc-cCCCceecchhHHHHHHHHHHhhhhhhhhceeeeccCCceeEEEEeecCCccc Confidence 11112222233222222222111111 223466787777789999999999999999999998777753 3333334334 Q ss_pred CCCCC-Cccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccC Q lcl|Aclame:pro 80 GRKAG-GRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADT 156 (341) Q Consensus 80 grt~t-~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~T 156 (341) +-... +..+ ..+.++.....+++.---+.|+.+.|+.. .++|...+.+.+.+.++.-.-.--++|...+.. T Consensus 164 ~~v~E~~~~~~~~~~~~~~v~l~~~k~~~~~~iS~ell~ds-----~~~l~~~i~~~l~~~i~~~~d~~~~~g~g~~~~- 237 (392) T protein:vir:10 164 AEITEMGEIPETDNPKFSNVQYAVKDRAGILPLSRSLLQDS-----DQNILKYVTKWLGKKSKVTRNVLILGVIEKLTK- 237 (392) T ss_pred eeecccccccccccccceeEEeeeeeEEEeehhhHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhccccccc- Confidence 33322 2222 12356666777777666677777777653 268999999999988876544333444321110 Q ss_pred ChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHh Q lcl|Aclame:pro 157 DPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQA 236 (341) Q Consensus 157 D~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~ 236 (341) .+...| |.+ -++++..+++.|+. ..+++|.+..++. + T Consensus 238 -----------------------------------~~~~~~---d~i-~~~~~~~l~~~~~~--~a~~vm~~~~~~~--L 274 (392) T protein:vir:10 238 -----------------------------------QAIKSL---DDI-KDVLNVKLDPAISP--NAILLTNQDGFNY--L 274 (392) T ss_pred -----------------------------------cCccCH---HHH-HHHHHHhhhhhhcc--CCEEEEcHHHHHH--H Confidence 112233 332 23343356777764 5789999987553 3 Q ss_pred HHHh-ccChhH-HHHHHHHHHHhhcCcc-cccCCcC-CC------CC--EEEeccCCcEEEEecCcEEEEEEEccc-ccc Q lcl|Aclame:pro 237 KLYD-KADKPS-EQIAAQKLDKTIAGRP-AYVPPFL-PD------NA--MVVTIPENLQVLTQHGTAQRKAKHESD-RKR 303 (341) Q Consensus 237 ~l~n-~~~~pt-E~~a~~~i~k~igGlp-a~~vPff-P~------~~--ilVT~l~NLsIY~Q~gs~RR~~~d~~~-r~r 303 (341) ..+. ....|- .-.....-..++-|.| +++.+.+ |. +. +++=.|++...-..++..+-.+ ++. -+. T Consensus 275 ~~lkd~~G~~l~~~~~~~~~~~tllG~~~v~~~~~~~~~~~~~~~~~~~~~~gdfs~~~~i~~~~~~~~~~--~~~~~~~ 352 (392) T protein:vir:10 275 DKLKDKDGKYILQSDPTQKNKKLFAGTNPVVVVSNRFLKSKGTTAKKAPLIIGDLKEAIVLFKREDMELAS--TDVGGKA 352 (392) T ss_pred HHhhccCCCeEeecCccCCccccccCcccEEEecccccCCCcccCCceEEEEEehhceEEEEeecceEEEE--eccccch Confidence 3331 111110 0000000123566665 4444332 11 11 4555555533222233333222 221 122 Q ss_pred eeccccceeeccc--------hheeeeccccccCC-cchh Q lcl|Aclame:pro 304 SKTHTGAWKVTQW--------VCWKRSPLTTQKKS-TSAL 334 (341) Q Consensus 304 ve~y~s~YvVEdy--------g~~~~~~~~~~~~~-~~a~ 334 (341) ++..+-+|.++-+ .+|....++..+-. +|+= T Consensus 353 f~~~~~~~r~~~r~d~~v~~~~a~~~l~~~~~a~~~~~~~ 392 (392) T protein:vir:10 353 FTRNTLDLRAIQRDDVQMWDNEAAVYGEIDLSAPVEQPQG 392 (392) T ss_pred hhcCceEEEEEEeeccEEecccceEEEEecccccccCCCC Confidence 2222234555442 23333333332222 2333 No 114 >protein:vir:102082 Length: 392 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512315;genbank:gi:89152484;genbank:GeneID:3953075 Probab=94.40 E-value=0.0045 Score=33.44 Aligned_cols=282 Identities=12% Similarity=0.094 Sum_probs=135.8 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccce-eecccccccC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQV-VDVGVSGLYT 79 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~-i~lgv~g~ia 79 (341) .+..++...+..........+...+. ...-.+.|-+.....+++.+.+.|.+++.+++++|.-..|.. +....+++-+ T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~t-~~~gg~~vP~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~a 163 (392) T protein:vir:10 85 RNKPLNAEEREFLEDDLEQRAMSGLT-GEDGGLVIPQDIQTQINELARSFDALEQYVTVEPVRTRSGSRVLEKNSDMIPF 163 (392) T ss_pred hcccccHHHHHHHhhhhhhhhccccc-cCCCceecchhHHHHHHHHHHhhhhhhhhceeeeccCCceeEEEEeecCCccc Confidence 11112222233222222222111111 223466787777789999999999999999999998777753 3333334334 Q ss_pred CCCCC-Cccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccC Q lcl|Aclame:pro 80 GRKAG-GRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADT 156 (341) Q Consensus 80 grt~t-~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~T 156 (341) +-... +..+ ..+.++.....+++.---+.|+.+.|+.. .++|...+.+.+.+.++.-.-.--++|...+.. T Consensus 164 ~~v~E~~~~~~~~~~~~~~v~l~~~k~~~~~~iS~ell~ds-----~~~l~~~i~~~l~~~i~~~~d~~~~~g~g~~~~- 237 (392) T protein:vir:10 164 AEITEMGEIPETDNPKFSNVQYAVKDRAGILPLSRSLLQDS-----DQNILKYVTKWLGKKSKVTRNVLILGVIEKLTK- 237 (392) T ss_pred eeecccccccccccccceeEEeeeeeEEEeehhhHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhccccccc- Confidence 33322 2222 12356666777777666677777777653 268999999999988876544333444321110 Q ss_pred ChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHh Q lcl|Aclame:pro 157 DPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQA 236 (341) Q Consensus 157 D~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~ 236 (341) .+...| |.+ -++++..+++.|+. ..+++|.+..++. + T Consensus 238 -----------------------------------~~~~~~---d~i-~~~~~~~l~~~~~~--~a~~vm~~~~~~~--L 274 (392) T protein:vir:10 238 -----------------------------------QAIKSL---DDI-KDVLNVKLDPAISP--NAILLTNQDGFNY--L 274 (392) T ss_pred -----------------------------------cCccCH---HHH-HHHHHHhhhhhhcc--CCEEEEcHHHHHH--H Confidence 112233 332 23343356777764 5789999987553 3 Q ss_pred HHHh-ccChhH-HHHHHHHHHHhhcCcc-cccCCcC-CC------CC--EEEeccCCcEEEEecCcEEEEEEEccc-ccc Q lcl|Aclame:pro 237 KLYD-KADKPS-EQIAAQKLDKTIAGRP-AYVPPFL-PD------NA--MVVTIPENLQVLTQHGTAQRKAKHESD-RKR 303 (341) Q Consensus 237 ~l~n-~~~~pt-E~~a~~~i~k~igGlp-a~~vPff-P~------~~--ilVT~l~NLsIY~Q~gs~RR~~~d~~~-r~r 303 (341) ..+. ....|- .-.....-..++-|.| +++.+.+ |. +. +++=.|++...-..++..+-.+ ++. -+. T Consensus 275 ~~lkd~~G~~l~~~~~~~~~~~tllG~~~v~~~~~~~~~~~~~~~~~~~~~~gdfs~~~~i~~~~~~~~~~--~~~~~~~ 352 (392) T protein:vir:10 275 DKLKDKDGKYILQSDPTQKNKKLFAGTNPVVVVSNRFLKSKGTTAKKAPLIIGDLKEAIVLFKREDMELAS--TDVGGKA 352 (392) T ss_pred HHhhccCCCeEeecCccCCccccccCcccEEEecccccCCCcccCCceEEEEEehhceEEEEeecceEEEE--eccccch Confidence 3331 111110 0000000123566665 4444332 11 11 4555555533222233333222 221 122 Q ss_pred eeccccceeeccc--------hheeeeccccccCC-cchh Q lcl|Aclame:pro 304 SKTHTGAWKVTQW--------VCWKRSPLTTQKKS-TSAL 334 (341) Q Consensus 304 ve~y~s~YvVEdy--------g~~~~~~~~~~~~~-~~a~ 334 (341) ++..+-+|.++-+ .+|....++..+-. +|+= T Consensus 353 f~~~~~~~r~~~r~d~~v~~~~a~~~l~~~~~a~~~~~~~ 392 (392) T protein:vir:10 353 FTRNTLDLRAIQRDDVQMWDNEAAVYGEIDLSAPVEQPQG 392 (392) T ss_pred hhcCceEEEEEEeeccEEecccceEEEEecccccccCCCC Confidence 2222234555442 23333333332222 2333 No 115 >protein:vir:105004 Length: 392 # NCBI annotation: putative major capsid protein # Family: family:all:21 # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459969;genbank:gi:85701384;genbank:GeneID:3882145 Probab=94.40 E-value=0.0045 Score=33.44 Aligned_cols=282 Identities=12% Similarity=0.094 Sum_probs=135.8 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccce-eecccccccC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQV-VDVGVSGLYT 79 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~-i~lgv~g~ia 79 (341) .+..++...+..........+...+. ...-.+.|-+.....+++.+.+.|.+++.+++++|.-..|.. +....+++-+ T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~t-~~~gg~~vP~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~a 163 (392) T protein:vir:10 85 RNKPLNAEEREFLEDDLEQRAMSGLT-GEDGGLVIPQDIQTQINELARSFDALEQYVTVEPVRTRSGSRVLEKNSDMIPF 163 (392) T ss_pred hcccccHHHHHHHhhhhhhhhccccc-cCCCceecchhHHHHHHHHHHhhhhhhhhceeeeccCCceeEEEEeecCCccc Confidence 11112222233222222222111111 223466787777789999999999999999999998777753 3333334334 Q ss_pred CCCCC-Cccc--cccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccccC Q lcl|Aclame:pro 80 GRKAG-GRFT--KQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADT 156 (341) Q Consensus 80 grt~t-~r~~--r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~~T 156 (341) +-... +..+ ..+.++.....+++.---+.|+.+.|+.. .++|...+.+.+.+.++.-.-.--++|...+.. T Consensus 164 ~~v~E~~~~~~~~~~~~~~v~l~~~k~~~~~~iS~ell~ds-----~~~l~~~i~~~l~~~i~~~~d~~~~~g~g~~~~- 237 (392) T protein:vir:10 164 AEITEMGEIPETDNPKFSNVQYAVKDRAGILPLSRSLLQDS-----DQNILKYVTKWLGKKSKVTRNVLILGVIEKLTK- 237 (392) T ss_pred eeecccccccccccccceeEEeeeeeEEEeehhhHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhccccccc- Confidence 33322 2222 12356666777777666677777777653 268999999999988876544333444321110 Q ss_pred ChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHh Q lcl|Aclame:pro 157 DPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQA 236 (341) Q Consensus 157 D~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~ 236 (341) .+...| |.+ -++++..+++.|+. ..+++|.+..++. + T Consensus 238 -----------------------------------~~~~~~---d~i-~~~~~~~l~~~~~~--~a~~vm~~~~~~~--L 274 (392) T protein:vir:10 238 -----------------------------------QAIKSL---DDI-KDVLNVKLDPAISP--NAILLTNQDGFNY--L 274 (392) T ss_pred -----------------------------------cCccCH---HHH-HHHHHHhhhhhhcc--CCEEEEcHHHHHH--H Confidence 112233 332 23343356777764 5789999987553 3 Q ss_pred HHHh-ccChhH-HHHHHHHHHHhhcCcc-cccCCcC-CC------CC--EEEeccCCcEEEEecCcEEEEEEEccc-ccc Q lcl|Aclame:pro 237 KLYD-KADKPS-EQIAAQKLDKTIAGRP-AYVPPFL-PD------NA--MVVTIPENLQVLTQHGTAQRKAKHESD-RKR 303 (341) Q Consensus 237 ~l~n-~~~~pt-E~~a~~~i~k~igGlp-a~~vPff-P~------~~--ilVT~l~NLsIY~Q~gs~RR~~~d~~~-r~r 303 (341) ..+. ....|- .-.....-..++-|.| +++.+.+ |. +. +++=.|++...-..++..+-.+ ++. -+. T Consensus 275 ~~lkd~~G~~l~~~~~~~~~~~tllG~~~v~~~~~~~~~~~~~~~~~~~~~~gdfs~~~~i~~~~~~~~~~--~~~~~~~ 352 (392) T protein:vir:10 275 DKLKDKDGKYILQSDPTQKNKKLFAGTNPVVVVSNRFLKSKGTTAKKAPLIIGDLKEAIVLFKREDMELAS--TDVGGKA 352 (392) T ss_pred HHhhccCCCeEeecCccCCccccccCcccEEEecccccCCCcccCCceEEEEEehhceEEEEeecceEEEE--eccccch Confidence 3331 111110 0000000123566665 4444332 11 11 4555555533222233333222 221 122 Q ss_pred eeccccceeeccc--------hheeeeccccccCC-cchh Q lcl|Aclame:pro 304 SKTHTGAWKVTQW--------VCWKRSPLTTQKKS-TSAL 334 (341) Q Consensus 304 ve~y~s~YvVEdy--------g~~~~~~~~~~~~~-~~a~ 334 (341) ++..+-+|.++-+ .+|....++..+-. +|+= T Consensus 353 f~~~~~~~r~~~r~d~~v~~~~a~~~l~~~~~a~~~~~~~ 392 (392) T protein:vir:10 353 FTRNTLDLRAIQRDDVQMWDNEAAVYGEIDLSAPVEQPQG 392 (392) T ss_pred hhcCceEEEEEEeeccEEecccceEEEEecccccccCCCC Confidence 2222234555442 23333333332222 2333 No 116 >protein:vir:5739 Length: 366 # NCBI annotation: capsid protein # Family: family:all:21 # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892050;genbank:gi:33770513;interpro:IPR006444;uniprot:Q7Y410;genbank:GeneID:1732928 Probab=94.09 E-value=0.0054 Score=33.00 Aligned_cols=300 Identities=10% Similarity=0.006 Sum_probs=138.5 Q ss_pred CC--ccccHHHHHHHHHH-HHHHH-HhhC---------chhhcceeecChHHHHHHHHHHHhhHHHhcc-cceecchhhc Q lcl|Aclame:pro 1 MS--QILTQSAREYMDNF-AQQLA-KSYG---------VSNVAELFNVSPQLETKLRAAITESAEFLKM-ITVTTVDQIE 66 (341) Q Consensus 1 m~--~~M~~~tr~~~~~y-~~~~A-~~ng---------v~~~~~~Fsv~P~~~q~L~~~iqess~FL~~-Inv~~V~~~~ 66 (341) +. ...+..++.+-+.- ...+| +.++ ....+-.+.|-+++...+++.+.+.+.+.+. .++++.. . T Consensus 30 ~~~~~~~~a~a~~~g~~~~a~~~a~~~~~~~~~~~a~~~~~~~Gg~lvP~~~~~~ii~~l~~~s~l~~lg~~~v~~~--~ 107 (366) T protein:vir:57 30 AGMTRMVMSIAAGKGNLADAAKFAATELGDTGLSMAISTAAGSGGALIPQNMQNEVIELLRDRTVVRILGARSIPLP--N 107 (366) T ss_pred hhHHHHHHHHHhcccchhHHHHHHHHhhcchhhhhhccccccCCccccchhHHHHHHHHHhhhcchhhhceeeeecC--C Confidence 11 00000010000000 00011 1111 1111223446556778899999988877665 5665543 2 Q ss_pred cc-eeecccccccCCCCCCC--ccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 67 GQ-VVDVGVSGLYTGRKAGG--RFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIM 143 (341) Q Consensus 67 Ge-~i~lgv~g~iagrt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i 143 (341) |. ++-.-.+++-++-...+ .....+.++...+..++.---+.|+-++|+.-. ++++..+++.+.++++.-.- T Consensus 108 g~~~~p~~t~~~~a~wv~E~~~~~~s~~~f~~i~~~~~k~~~~~~iS~ell~ds~-----~~~~~~i~~~l~~a~~~~~d 182 (366) T protein:vir:57 108 GNLSMPRLSGGATAGYVGEGKDVVATGATFDDVKLSAKTMIALVPVSNQLIGRAG-----FNVEQLLLGDILSAIATRED 182 (366) T ss_pred CceEEEEEeCCcceeeeccCccccccccceeEEEEeeEEEEEeehhhHHHHhhhh-----HHHHHHHHHHHHHHHHHHHH Confidence 32 11111223333322211 112234566666777766656667666665332 68999999999999998777 Q ss_pred HHhhccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeE Q lcl|Aclame:pro 144 RIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLT 223 (341) Q Consensus 144 ~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLV 223 (341) .--++|.-.+ .+|. |.+. ... .-+......|++.++..+|.++--+.. .....-......+ T Consensus 183 ~a~l~G~G~~------~~p~------Gi~~----~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~ 243 (366) T protein:vir:57 183 KAFLRDDGTG------DTPK------GMKA----VAT--AANRLVAWTGTAINLTTIDEYLDSLIL-KHMDSNSNMIRCG 243 (366) T ss_pred HHhhccCCCC------cccc------ceee----ccc--cccceeeccccccchhhHHHHHHHHHH-hhhccccccccCE Confidence 7777884311 1232 3221 000 001112334677888888876433221 1111111223567 Q ss_pred EEeChHHHHHHHhHHH-hccChhHHHHHHHHHHHhhcCcccccCCcCCCC--------CEEEeccCCcEEEEecCcEEEE Q lcl|Aclame:pro 224 VFVGSGLIGAAQAKLY-DKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDN--------AMVVTIPENLQVLTQHGTAQRK 294 (341) Q Consensus 224 vivG~dLla~~~~~l~-n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~--------~ilVT~l~NLsIY~Q~gs~RR~ 294 (341) ++|.+.... .+..+ .....|.= -..-..++-|+|++..+++|++ .+++-.++++-|. ..+..+-. T Consensus 244 ~vmn~~~~~--~L~~lkd~~G~~l~---~~~~~g~l~G~Pvv~s~~ip~~~~~~~~~~~i~~gdfs~~~i~-~~~~i~i~ 317 (366) T protein:vir:57 244 WGLSNRTYM--TLFGLRDGNGNKVY---PEMSQGILKGYPIQRTSAIPANLGDDGNESEIYFCDFNDVVIG-EDGMMKVD 317 (366) T ss_pred EEecHHHHH--HHHhhhccCCceec---cCCCCCeecceeeEEccccccccccCCCccEEEEEecceEEEE-EecceEEE Confidence 889988655 23333 22222210 0011347899999999999984 3777788776543 33443333 Q ss_pred EEEcccc-----cceecccc---ceeecc-ch--heeeeccccccCCcchhcc Q lcl|Aclame:pro 295 AKHESDR-----KRSKTHTG---AWKVTQ-WV--CWKRSPLTTQKKSTSALNH 336 (341) Q Consensus 295 ~~d~~~r-----~rve~y~s---~YvVEd-yg--~~~~~~~~~~~~~~~a~~~ 336 (341) +-++... .-+-.|+. ++.+|- ++ ......|...+.. .. T Consensus 318 ~~~ea~~~~~~g~~~~~f~~~~~~iR~~~~~d~~v~~~~a~~~lt~~----~~ 366 (366) T protein:vir:57 318 FSTEATYKDADGQLVSAFARNQSLIRVVTEHDIGFRHPEGLVLGTGV----IW 366 (366) T ss_pred EeeccccccccccchhhhhcCceeEEeeeeeCcEeeccccEEEEecc----cC Confidence 3222210 00111211 444443 22 1212222221111 11 No 117 >protein:vir:105038 Length: 428 # NCBI annotation: major capsid head protein precursor # Family: family:all:21 # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006586;genbank:gi:46402092;genbank:GeneID:2777903 Probab=85.92 E-value=0.049 Score=27.75 Aligned_cols=298 Identities=9% Similarity=0.027 Sum_probs=129.6 Q ss_pred CCc------cccHHHHHH------HHHHH---------HHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcc-cc Q lcl|Aclame:pro 1 MSQ------ILTQSAREY------MDNFA---------QQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKM-IT 58 (341) Q Consensus 1 m~~------~M~~~tr~~------~~~y~---------~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~-In 58 (341) +.- .+.+..+.. +.... ...+...+....+-.+.|-......+++.+++++.+++. .+ T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~liP~~~~~~ii~~l~~~~~l~~~~~~ 162 (428) T protein:vir:10 83 AEPKQYTGAGMTRMVMSIAAAQGNLQDAAKFASDELNDQSVSMAISTAAGSGGVLIPQNIHSEVIELLRDRTIVRKLGAR 162 (428) T ss_pred cccchhhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhhHhhhhcccccCCccccchhHHHHHHHHHhhhchhhhhcce Confidence 000 000000000 00000 000011111111123445556678899999999987776 45 Q ss_pred eecchhhccc-eeecccccccCCCCCC-Ccc-ccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHH Q lcl|Aclame:pro 59 VTTVDQIEGQ-VVDVGVSGLYTGRKAG-GRF-TKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSN 135 (341) Q Consensus 59 v~~V~~~~Ge-~i~lgv~g~iagrt~t-~r~-~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~ 135 (341) +++.. .|. ++-.-.+++-++-... +.. ...+.++...+..++.---+.|+.++|+. + .++|+..+.+.+. T Consensus 163 ~~~~~--~g~~~~p~~~~~~~a~~v~Eg~~~~~~~~~f~~i~~~~~k~~~~v~is~ell~d-s----~~~l~~~i~~~l~ 235 (428) T protein:vir:10 163 SIPLP--NGNMSLPRLAGGATASYTGENQDAKVSEARFDDVKLTAKTMIAMVPISNALIGR-A----GFNVEQLVLQDIL 235 (428) T ss_pred eeecC--CcceEEEEEeCCcceeeeccCccccccccceeeEEeeeEEEEEeehhhHHHHhh-h----hHHHHHHHHHHHH Confidence 55543 232 1211112332332221 111 12234455555555555557777776652 2 2679999999999 Q ss_pred HHHhhhHHHHhhccccccccCChhhccchhhhhhhHHHHHHHhhc--cccccccceeecCCchhhhHHHHHHHHHh-ccc Q lcl|Aclame:pro 136 QMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKA--SQVVDVDVYFDETNGDYRTLDAMASDIIN-NQI 212 (341) Q Consensus 136 ~~~alD~i~IGfnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~--~~v~~~~~~~~g~ggdy~nLDalv~d~~~-~li 212 (341) ++++.-.-.--++|.-.. .+|.+ =+. .++ ..++.. ..+...++..+|.++.-+.. ... T Consensus 236 ~ai~~~~d~~~l~G~G~~------~~p~G------i~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 296 (428) T protein:vir:10 236 TAISVREDKAFMRDDGTG------DTPIG------MKA----RATQWNRLLPW---AADAAVNLDTIDTYLDSIILMSMD 296 (428) T ss_pred HHHHHHHHHHHhccCCCC------ccccc------ccc----ccccccccccc---cccccccHHHHHHHHHHHHHhhhc Confidence 999877766777884311 23332 111 000 011111 11344555555543322211 111 Q ss_pred chhhccCCCeEEEeChHHHHHHHhHHHhccC-hhHHHHHHHHHHHhhcCcccccCCcCCCC--------CEEEeccCCcE Q lcl|Aclame:pro 213 HPMFRNDPRLTVFVGSGLIGAAQAKLYDKAD-KPSEQIAAQKLDKTIAGRPAYVPPFLPDN--------AMVVTIPENLQ 283 (341) Q Consensus 213 ~~~~r~~~dLVvivG~dLla~~~~~l~n~~~-~ptE~~a~~~i~k~igGlpa~~vPffP~~--------~ilVT~l~NLs 283 (341) ...+ ....+++|.+..+. .+..+-..+ .|- .-..-+.++.|+|++..+++|++ .+++-.++++- T Consensus 297 ~~~~--~~~~~~v~n~~~~~--~L~~lkd~~G~~i---~~~~~~g~l~G~pv~~~~~~p~~~~~~~~~~~i~~gd~s~~~ 369 (428) T protein:vir:10 297 GNSN--MISSGWGMSNRTYM--KLFGLRDGNGNKV---YPEMAQGMLKGYPIQRTSAIPANLGEGGKESEIYFADFNDVV 369 (428) T ss_pred cccc--cccCEEEEcHHHHH--HHHHhhccCCcee---ccCCCCCeeeceeeEEeccccccccCCCccceEEEEecceEE Confidence 2222 23468899988764 344332221 221 00111357999999999999986 36667777655 Q ss_pred EEEecCcEEEEEEEcccc----cc-eeccc--c-ceeecc-ch--heeeeccccccCCcchhcc Q lcl|Aclame:pro 284 VLTQHGTAQRKAKHESDR----KR-SKTHT--G-AWKVTQ-WV--CWKRSPLTTQKKSTSALNH 336 (341) Q Consensus 284 IY~Q~gs~RR~~~d~~~r----~r-ve~y~--s-~YvVEd-yg--~~~~~~~~~~~~~~~a~~~ 336 (341) |.. .+..+-..-++... .. +-.|. . ++.+|- +| ......|..+.. ++. T Consensus 370 i~~-~~~i~i~~~~~~~~~~~~~~~~~~f~~~~~~~R~~~r~d~~v~~p~a~~~~t~----~~~ 428 (428) T protein:vir:10 370 IGE-DGNMKVDFSKEASYIDTDGKLVSAFSRNQSLIRVVTEHDIGFRHPEGLVLGTG----VLF 428 (428) T ss_pred EEE-ecceEEEeecccccccccccccchhhcchhheeeeeeeCceeeccceEEEEec----cCC Confidence 443 33333322222111 01 11121 1 444333 22 222222322211 111 No 118 >protein:vir:9820 Length: 272 # NCBI annotation: putative major capsid/head protein # Family: family:all:522 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795582;genbank:gi:28876339;genbank:GeneID:1257858 Probab=72.21 E-value=0.19 Score=24.59 Aligned_cols=257 Identities=10% Similarity=0.094 Sum_probs=116.4 Q ss_pred HHHhhCchhhcceeecChHH-HHHHHHHHHhhHHHhcccceec-chhhccceeecccccccCCCCC--CC--ccccccCC Q lcl|Aclame:pro 20 LAKSYGVSNVAELFNVSPQL-ETKLRAAITESAEFLKMITVTT-VDQIEGQVVDVGVSGLYTGRKA--GG--RFTKQVGV 93 (341) Q Consensus 20 ~A~~ngv~~~~~~Fsv~P~~-~q~L~~~iqess~FL~~Inv~~-V~~~~Ge~i~lgv~g~iagrt~--t~--r~~r~~~l 93 (341) ||..+ -..+. -+.|++ .+.+.+.+++++.|-+..++.. .....|..|.+=.-..+..-.. .+ -.+..++. T Consensus 1 MA~~~--T~~~~--~~iPev~s~~v~~~~~~~~~~~~~~~~~~~~~g~~G~tv~iP~~~~~~~a~~v~eg~~i~~~~~~~ 76 (272) T protein:vir:98 1 MAVGT--TKMAQ--MLDPEVLADMIDAEVGKAIRFAPLAEVDTTLEGQPGTTLTVPKWDYIGDAEDVAEGEAIPMTQLGF 76 (272) T ss_pred CCCcc--ccchh--eechHHHHHHHHHHHHHHhhhhccccccccccCCCCCEEEEEEecCCCCcccccCCCccccccccc Confidence 22111 01111 234533 4455577777777655444321 1122344444422111111111 11 11222344 Q ss_pred CCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhh--hHHHHhhccccccccCChhhccchhhhhhhH Q lcl|Aclame:pro 94 GGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFAL--DIMRIGWNGVSAEADTDPSANPLGQDVNEGW 171 (341) Q Consensus 94 ~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~al--D~i~IGfnG~s~A~~TD~~anPllqDVNkGW 171 (341) +......++. ...++...++.... .+|+...+.+.+.+.++. |...++-- T Consensus 77 ~~~~~~~~~~--~~~~~itd~~~~~s---~~d~~~~~~~~~~~~~a~~~d~~i~~~~----------------------- 128 (272) T protein:vir:98 77 KKTTMTIKKA--GKGVEITDEAILSG---YGDPVGQAAKQIVEAIDHKVDADVLDAL----------------------- 128 (272) T ss_pred ceEEEEeeee--eeeeeecHHHHhhc---cccHHHHHHHHHHHHHHHHHHHHHHHHh----------------------- Confidence 4555555553 33455544554443 588999999888888764 33333211 Q ss_pred HHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHH-hHHHh--ccChhHHH Q lcl|Aclame:pro 172 IAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQ-AKLYD--KADKPSEQ 248 (341) Q Consensus 172 lq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~-~~l~n--~~~~ptE~ 248 (341) ++.......+.. +|+ +.|++.. ++.. ..+.-+++|+++..+.-. ..+.+ ..+..... T Consensus 129 -------------~~a~~~~~~~~t---~d~-i~da~~~-l~~~--~~~~~~~vv~p~~~~~L~k~~~~~~~~~~~~~~~ 188 (272) T protein:vir:98 129 -------------SKSTQTVEATAT---VDG-VSKALDI-FNDE--DDAETVIVMNPADASTLRLDAAKEWLGATEVGAN 188 (272) T ss_pred -------------cccccccccccC---HHH-HHHHHHH-Hhcc--CCCccEEEEcHHHHHHHHHhcccccccccccccc Confidence 111111122333 443 3455543 3443 233458899998654311 11121 11111111 Q ss_pred HHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceeccccce--eeccchheeeec--c Q lcl|Aclame:pro 249 IAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTGAW--KVTQWVCWKRSP--L 324 (341) Q Consensus 249 ~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s~Y--vVEdyg~~~~~~--~ 324 (341) ........+|.|+|++.-+++|++.+++-.-..+.++.+.+.. ++ .+|+. ...+.. +-.-||+-..-+ + T Consensus 189 ~~~~g~ig~i~G~~Vi~s~~~p~~t~~~~~~~a~~~~~~~~~~---ve--~~r~~--~~~~~~i~~~~~~~~~v~~~~~v 261 (272) T protein:vir:98 189 RVVSGVYGEVLGVQIVRSRKCPKGTAYMVRKGALRIMLKRNTM---VE--TDRDI--TKAINQIVANKHYGVYLYKAEKA 261 (272) T ss_pred ccccccchhhcCeeEEEcCCCCcceEEEEcCCeEEEEecCCce---ee--ecccc--ccceeEEEEEEEEEEEEEcCCce Confidence 1111123579999999999999999999999999998877643 22 12221 112211 223344322111 2 Q ss_pred ccccCCcchhc Q lcl|Aclame:pro 325 TTQKKSTSALN 335 (341) Q Consensus 325 ~~~~~~~~a~~ 335 (341) ..++.++++-. T Consensus 262 v~~t~~~a~~~ 272 (272) T protein:vir:98 262 VKITLKDAAKK 272 (272) T ss_pred EEEEecccccC Confidence 22222222221 No 119 >protein:vir:3033 Length: 272 # NCBI annotation: major capsid protein # Family: family:all:522 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438146;genbank:gi:16271809;genbank:GeneID:929235 Probab=72.21 E-value=0.19 Score=24.59 Aligned_cols=257 Identities=10% Similarity=0.094 Sum_probs=116.4 Q ss_pred HHHhhCchhhcceeecChHH-HHHHHHHHHhhHHHhcccceec-chhhccceeecccccccCCCCC--CC--ccccccCC Q lcl|Aclame:pro 20 LAKSYGVSNVAELFNVSPQL-ETKLRAAITESAEFLKMITVTT-VDQIEGQVVDVGVSGLYTGRKA--GG--RFTKQVGV 93 (341) Q Consensus 20 ~A~~ngv~~~~~~Fsv~P~~-~q~L~~~iqess~FL~~Inv~~-V~~~~Ge~i~lgv~g~iagrt~--t~--r~~r~~~l 93 (341) ||..+ -..+. -+.|++ .+.+.+.+++++.|-+..++.. .....|..|.+=.-..+..-.. .+ -.+..++. T Consensus 1 MA~~~--T~~~~--~~iPev~s~~v~~~~~~~~~~~~~~~~~~~~~g~~G~tv~iP~~~~~~~a~~v~eg~~i~~~~~~~ 76 (272) T protein:vir:30 1 MAVGT--TKMAQ--MLDPEVLADMIDAEVGKAIRFAPLAEVDTTLEGQPGTTLTVPKWDYIGDAEDVAEGEAIPMTQLGF 76 (272) T ss_pred CCCcc--ccchh--eechHHHHHHHHHHHHHHhhhhccccccccccCCCCCEEEEEEecCCCCcccccCCCccccccccc Confidence 22111 01111 234533 4455577777777655444321 1122344444422111111111 11 11222344 Q ss_pred CCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhh--hHHHHhhccccccccCChhhccchhhhhhhH Q lcl|Aclame:pro 94 GGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFAL--DIMRIGWNGVSAEADTDPSANPLGQDVNEGW 171 (341) Q Consensus 94 ~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~al--D~i~IGfnG~s~A~~TD~~anPllqDVNkGW 171 (341) +......++. ...++...++.... .+|+...+.+.+.+.++. |...++-- T Consensus 77 ~~~~~~~~~~--~~~~~itd~~~~~s---~~d~~~~~~~~~~~~~a~~~d~~i~~~~----------------------- 128 (272) T protein:vir:30 77 KKTTMTIKKA--GKGVEITDEAILSG---YGDPVGQAAKQIVEAIDHKVDADVLDAL----------------------- 128 (272) T ss_pred ceEEEEeeee--eeeeeecHHHHhhc---cccHHHHHHHHHHHHHHHHHHHHHHHHh----------------------- Confidence 4555555553 33455544554443 588999999888888764 33333211 Q ss_pred HHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHHHHH-hHHHh--ccChhHHH Q lcl|Aclame:pro 172 IAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQ-AKLYD--KADKPSEQ 248 (341) Q Consensus 172 lq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~-~~l~n--~~~~ptE~ 248 (341) ++.......+.. +|+ +.|++.. ++.. ..+.-+++|+++..+.-. ..+.+ ..+..... T Consensus 129 -------------~~a~~~~~~~~t---~d~-i~da~~~-l~~~--~~~~~~~vv~p~~~~~L~k~~~~~~~~~~~~~~~ 188 (272) T protein:vir:30 129 -------------SKSTQTVEATAT---VDG-VSKALDI-FNDE--DDAETVIVMNPADASTLRLDAAKEWLGATEVGAN 188 (272) T ss_pred -------------cccccccccccC---HHH-HHHHHHH-Hhcc--CCCccEEEEcHHHHHHHHHhcccccccccccccc Confidence 111111122333 443 3455543 3443 233458899998654311 11121 11111111 Q ss_pred HHHHHHHHhhcCcccccCCcCCCCCEEEeccCCcEEEEecCcEEEEEEEcccccceeccccce--eeccchheeeec--c Q lcl|Aclame:pro 249 IAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENLQVLTQHGTAQRKAKHESDRKRSKTHTGAW--KVTQWVCWKRSP--L 324 (341) Q Consensus 249 ~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NLsIY~Q~gs~RR~~~d~~~r~rve~y~s~Y--vVEdyg~~~~~~--~ 324 (341) ........+|.|+|++.-+++|++.+++-.-..+.++.+.+.. ++ .+|+. ...+.. +-.-||+-..-+ + T Consensus 189 ~~~~g~ig~i~G~~Vi~s~~~p~~t~~~~~~~a~~~~~~~~~~---ve--~~r~~--~~~~~~i~~~~~~~~~v~~~~~v 261 (272) T protein:vir:30 189 RVVSGVYGEVLGVQIVRSRKCPKGTAYMVRKGALRIMLKRNTM---VE--TDRDI--TKAINQIVANKHYGVYLYKAEKA 261 (272) T ss_pred ccccccchhhcCeeEEEcCCCCcceEEEEcCCeEEEEecCCce---ee--ecccc--ccceeEEEEEEEEEEEEEcCCce Confidence 1111123579999999999999999999999999998877643 22 12221 112211 223344322111 2 Q ss_pred ccccCCcchhc Q lcl|Aclame:pro 325 TTQKKSTSALN 335 (341) Q Consensus 325 ~~~~~~~~a~~ 335 (341) ..++.++++-. T Consensus 262 v~~t~~~a~~~ 272 (272) T protein:vir:30 262 VKITLKDAAKK 272 (272) T ss_pred EEEEecccccC Confidence 22222222221 No 120 >protein:vir:93616 Length: 645 # NCBI annotation: putative major head protein/prohead protease # Family: family:all:21 # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449293;genbank:gi:157166041;goa:Q6H9U8;interpro:IPR006433;uniprot:Q6H9U8;genbank:GeneID:5580438 Probab=72.17 E-value=0.19 Score=24.59 Aligned_cols=292 Identities=11% Similarity=0.074 Sum_probs=120.0 Q ss_pred CCccccHHHHHHHHHHHHH-------------HHHh-----------------hCc--h-hhcceeecChHHHHHHHHHH Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQ-------------LAKS-----------------YGV--S-NVAELFNVSPQLETKLRAAI 47 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~-------------~A~~-----------------ngv--~-~~~~~Fsv~P~~~q~L~~~i 47 (341) .+-.++. ..|..+... +|+. -|. + ..+-.|.|.....+.+++.+ T Consensus 286 ~~~~~kg---~~f~~~~~al~~~~g~~~~a~e~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Gg~~vp~~~~~~ii~~l 362 (645) T protein:vir:93 286 EQKLDKG---IGFARFAKSLAAAKGVRSEALEVARRQYPDDSRLHHVLKSAVGAGTTTDPQWAGSLSEYQEYAQDFIDYL 362 (645) T ss_pred hhhhhhh---hhHHHHHHHHHhcccchhHHHHHHHhhcccchhhhhhhhhhhhccccccccccCCccCchhhHHHHHHhh Confidence 0000000 001111111 1111 111 0 11235666666788899999 Q ss_pred HhhHHHhcccce-ecc-hhhc-cceeecccccccCCCCCCC--ccccccCCCCcceEEEEeeeeeeecHH-HHHHHHhcc Q lcl|Aclame:pro 48 TESAEFLKMITV-TTV-DQIE-GQVVDVGVSGLYTGRKAGG--RFTKQVGVGGHKYKLAETDSCAAITWA-MLCQWANQG 121 (341) Q Consensus 48 qess~FL~~Inv-~~V-~~~~-Ge~i~lgv~g~iagrt~t~--r~~r~~~l~~~~Y~c~qtn~dt~i~y~-~lDaWA~~g 121 (341) ++.|-+.+.-.. ++. .... +.++-.-.+++.++=...+ .....+.++...+..++ +.+.++.. .|-.++. T Consensus 363 ~~~svv~~l~~~~~~~~~~~~~~~~ip~~t~~~~a~wv~Eg~~~~~s~~~f~~v~l~~~k--la~~~~iS~ell~ds~-- 438 (645) T protein:vir:93 363 RPQTIIGRFGQGGIPALRQVPFNIRVHAQVSGGAAGWVGEGKTKPLTKFDFESITFSHAK--VSAIAVLTEELIRFSS-- 438 (645) T ss_pred hhhhhHHhhccccccccccccCceeeeeeecCcceEEeccCccccccccceeEEEEeeEE--EEEeehhHHHHHhhch-- Confidence 998877654322 111 1111 1223222333333322211 11222345555555555 33445543 2333442 Q ss_pred CchhHHHHHHHHHHHHHhhhHHHHhhcccccc-ccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCchhhhH Q lcl|Aclame:pro 122 GRDQFMKHLTEFSNQMFALDIMRIGWNGVSAE-ADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTL 200 (341) Q Consensus 122 ~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A-~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nL 200 (341) +++++.+++.+.+.++.=.-.--++|+-.+ .... |.+ +..+.......+..+.++ T Consensus 439 --~~~~~~i~~~l~~aia~~~d~a~l~g~g~~~~~~~----p~g------------------i~~~~~~~~~~~~~~~d~ 494 (645) T protein:vir:93 439 --PAADALVRNALAEAVVARLDTDFVDPKKAAVADVS----PAS------------------ITHDVKGTASSGNPDADA 494 (645) T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCcc----ccc------------------eeccccccccccchHHHH Confidence 688888998888887743333334553322 1111 211 111111111223344555 Q ss_pred HHHHHHHHhcccchhhccCCCeEEEeChHHHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccC Q lcl|Aclame:pro 201 DAMASDIINNQIHPMFRNDPRLTVFVGSGLIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPE 280 (341) Q Consensus 201 Dalv~d~~~~li~~~~r~~~dLVvivG~dLla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~ 280 (341) ..+...+...-+ +-..-|++|.+..... ...|-.....|- ---...-..++-|+|++...++|++-++ ..++ T Consensus 495 ~~~~~~~~~a~~-----~~~~a~~vmn~~~~~~-L~~lkd~~G~~~-~~~~~~~~~tL~G~PV~~s~~vp~~~~~-gd~s 566 (645) T protein:vir:93 495 EAAFGQFVAANL-----QPTGAVWLMSSTNALA-LSMRKNALGQKE-YPDMTLLGGSFQGLPVIVSQYVGDQLVL-VNAP 566 (645) T ss_pred HHHHHHHHhcCC-----CccccEEEEcHHHHHH-HHhccccCCcee-ecCCCCCCceeeceeeEEeccCCcceeE-eccc Confidence 555444332211 1234689999986542 122212111110 0000001247999999999999987554 4666 Q ss_pred CcEEEEecCcEEE--------EEEEcccccc--------eecccc---ceeeccc--------hheeeec-cccccCCcc Q lcl|Aclame:pro 281 NLQVLTQHGTAQR--------KAKHESDRKR--------SKTHTG---AWKVTQW--------VCWKRSP-LTTQKKSTS 332 (341) Q Consensus 281 NLsIY~Q~gs~RR--------~~~d~~~r~r--------ve~y~s---~YvVEdy--------g~~~~~~-~~~~~~~~~ 332 (341) .+-|-.. +...- .+.+.|.-+. |.-|+. ++.+|-+ .+|+... ++.+...-. T Consensus 567 ~~~ig~~-~~v~i~~s~~a~~~~~~~~~~~~~~~~~~~~v~lf~~d~vaira~~r~d~~~~~p~a~~~lt~~~~g~~~~~ 645 (645) T protein:vir:93 567 DIYLADD-GGVAVDMSREASLEMQSEPTGDSTTPSPVELVSMFQTGSVAIRAERWINWRRRRTAAVAVITGVNYGSASGG 645 (645) T ss_pred cEEEEEe-cceEEEeecceeEEEeecccccccccccccchhHhhcCceEEEEEEEEcceeeCccceEEEecccCCcccCC Confidence 5443222 22221 1222222221 111322 4444432 2222221 222222222 No 121 >protein:vir:1541 Length: 347 # NCBI annotation: major capsid protein 10A # Family: family:all:975 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052109;swissprot:trembl:q9t107;genbank:gi:9634035;uniprot:Q9T107;genbank:GeneID:1262383 Probab=61.87 E-value=0.35 Score=23.12 Aligned_cols=285 Identities=11% Similarity=0.060 Sum_probs=126.9 Q ss_pred CCccccHH---HHHHHHHHHHHHHHhhCchh--hcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc Q lcl|Aclame:pro 1 MSQILTQS---AREYMDNFAQQLAKSYGVSN--VAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS 75 (341) Q Consensus 1 m~~~M~~~---tr~~~~~y~~~~A~~ngv~~--~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~ 75 (341) |...|... ||. ..++.++-.. .-+.|+ -.+..+.+.+|-|+.+.++-.++ .|..+.+-.- T Consensus 1 ma~~~~~~~~~t~~-------~~~~~~~~~~a~~ie~f~------g~V~~~f~~~s~~~~~~~~~~~~--~G~sv~i~~i 65 (347) T protein:vir:15 1 MANIQGGQQIGTNQ-------GKGQSAADKLALFLKVFG------GEVLTAFARTSVTMPRHMLRSIA--SGKSAQFPVI 65 (347) T ss_pred CCccccCCcccccc-------ccCCCcchHHHHHHHHHH------HHHHHHHHHhhhhhhcccccccc--ccceeEeeec Confidence 66544432 221 1111222111 124453 45566778889999999887655 4888877666 Q ss_pred cccCCCCCCCccc--ccc-CCCCcc--eEEEEeeeee-eecHHHHHHHHhccCchhHHHHHHHHHHHHHhh--hHHHHh- Q lcl|Aclame:pro 76 GLYTGRKAGGRFT--KQV-GVGGHK--YKLAETDSCA-AITWAMLCQWANQGGRDQFMKHLTEFSNQMFAL--DIMRIG- 146 (341) Q Consensus 76 g~iagrt~t~r~~--r~~-~l~~~~--Y~c~qtn~dt-~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~al--D~i~IG- 146 (341) |..+...-+.... ... .+...+ +.+-+.-+.. .| ..+|.|.. .-|+...+.+.....+|. |.-.++ T Consensus 66 g~~t~~~~~~g~~l~~~~~~~~~~e~~ltID~~~~~~~~V--ddlD~~q~---~~D~~~~~~~~~g~aLA~~~D~~i~~~ 140 (347) T protein:vir:15 66 GRTKAAYLKPGENLDDKRKDIKHTEKVIHIDGLLTADVLI--YDIEDAMN---HYDVRAEYTAQLGESLAMAADGAVLAE 140 (347) T ss_pred cceeeeeeccCCCCCCCCCCCccceEEEEechhhhhhHHh--hhHHHHhc---CCcchHHHHHHHHHHHHHHHHHHHHHH Confidence 6554332221111 111 122222 3333332222 23 47888886 446777777666666655 332221 Q ss_pred ---hccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCch-------hhhHHHHHHHHHhcccchhh Q lcl|Aclame:pro 147 ---WNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGD-------YRTLDAMASDIINNQIHPMF 216 (341) Q Consensus 147 ---fnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggd-------y~nLDalv~d~~~~li~~~~ 216 (341) -...+.+. ..+...| ||-. +..+ ...++|+ +.++=.++.++.. .+++.. T Consensus 141 l~~~~~~~~~~-~~~~~~~-------g~~~----------~~~~--~~~~~~~~~~~~~~~~~i~d~~~~a~~-~Lde~~ 199 (347) T protein:vir:15 141 LAGLVNLPDAS-NENIEGL-------GKPT----------VLTL--VKPTTGDLTDPVELGKAIIAQLTIARA-SLTKNY 199 (347) T ss_pred HHHHhhccccc-ccccccc-------Cccc----------cccc--cccccccchhhhhHHHHHHHHHHHHHH-HHhhcC Confidence 11011000 0000001 1111 0010 0111222 3444334555554 346666 Q ss_pred ccCCCeEEEeChH----HHHHHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEe--------------- Q lcl|Aclame:pro 217 RNDPRLTVFVGSG----LIGAAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVT--------------- 277 (341) Q Consensus 217 r~~~dLVvivG~d----Lla~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT--------------- 277 (341) -...+.+++|+++ ||.+.. +++..-..++.+ .+-...++.|.+++..+.+|....--+ T Consensus 200 VP~~gR~~vv~P~~y~~LL~~~~--~~~~d~~~~~~~-~~G~Vg~i~G~~V~~Sn~lp~~~~t~~~~~~~~g~~~~~~~~ 276 (347) T protein:vir:15 200 VPAADRTFYTTPDNYSAILAALM--PNAANYQALIDH-ERGTIRNVMGFEVVEVPHLTAGGAGDTREDAPADQKHAFPAT 276 (347) T ss_pred CCccCCEEEeCHHHHHHHhcccc--cccccccccccc-cceEEEEEeceEEEeccccccccccccccccccccccccccc Confidence 6666889999975 333222 222211111111 111223689999999999996543211 Q ss_pred -------ccCCcE-EEEecCcE-EEEEEE-cccccceeccccceeeccc--h-------heeeeccccccC Q lcl|Aclame:pro 278 -------IPENLQ-VLTQHGTA-QRKAKH-ESDRKRSKTHTGAWKVTQW--V-------CWKRSPLTTQKK 329 (341) Q Consensus 278 -------~l~NLs-IY~Q~gs~-RR~~~d-~~~r~rve~y~s~YvVEdy--g-------~~~~~~~~~~~~ 329 (341) .+++.. +-+|+... -=+.++ .-++.|-+.|+.+.|+--| | |+.+..+..+.+ T Consensus 277 ~~~~~~~~f~~~~~l~~h~~A~g~v~~~~~~~e~~~~~~~~~d~i~~~~~~G~~vlrP~~av~~~~~~~~~ 347 (347) T protein:vir:15 277 SSTTVKVALDNVVGLFQHRSAVGTVKLKDLALERARRANYQADQIIAKYAMGHGGLRPEAAGAIVLPKVSE 347 (347) T ss_pred ccceeeeccccceeeeeccceeeeeEeeceeeeecccchhhhhhhehhhhcCCceeccccEEEEecCCCCC Confidence 112221 12222211 111122 3445555666666666653 3 344444444433 No 122 >protein:vir:103285 Length: 296 # NCBI annotation: hypothetical protein # Family: family:all:463 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277465;genbank:gi:71834107;genbank:GeneID:3562396 Probab=51.34 E-value=0.58 Score=21.86 Aligned_cols=276 Identities=8% Similarity=0.024 Sum_probs=120.6 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeec------cc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDV------GV 74 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~l------gv 74 (341) |+| .... ---.|+.+. +- .|+|.+-+.+..-+. ..+.|.+...-..--|.+.. |. T Consensus 1 ~~~--~~a~--~~~~f~~~q--l~---------~id~~v~e~~~~~l~----~~~~i~v~~~~~~~~~~~~~~~~~~~G~ 61 (296) T protein:vir:10 1 MGV--DKAD--AAGIWTVKQ--LT---------ASLNKAYETEYDQNS----VVNLFPVSNEIPGYAKYFEYPVFDGVGI 61 (296) T ss_pred Ccc--cchh--hhHHHHHHH--HH---------HHHHHHHhhhhcccc----cceecccccCCCCceeEEEeeeeeccCc Confidence 443 2111 011222221 11 133333333333222 22323222111111122222 22 Q ss_pred ccccCCCCCCCccccccCCCCcceEEEEeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhhHHHHhhccccccc Q lcl|Aclame:pro 75 SGLYTGRKAGGRFTKQVGVGGHKYKLAETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEA 154 (341) Q Consensus 75 ~g~iagrt~t~r~~r~~~l~~~~Y~c~qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD~i~IGfnG~s~A~ 154 (341) ...+...++.- ..-+...+.........--+..+.+.-|.+.+..|- +...+-....++..+..+=.|.|+|.+..- T Consensus 62 a~~~~~~~~di-p~v~~~~~~~~~~i~~~~~~~~~~~~El~~a~~~g~--~l~~~ka~aA~~~~~~~~n~~~f~G~~~~g 138 (296) T protein:vir:10 62 AQIVADYTDDL-PLVDALATERQGKVFRFGNAFLISIDEIKVGQATGQ--SLSTRKQSLAFEAHDKLLDKLVWSGSTAHG 138 (296) T ss_pred eeEeCCCcccc-ceeeccceeEEEEEEEEEeeeeecHHHHHHHHHhCC--ChHHHHHHHHHHHHHHhhceEEEeeccccc Confidence 22222222111 001112222233334434455566678888888653 466677788888888888899999943222 Q ss_pred cCChhhccchhhhhh--hHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHHHH Q lcl|Aclame:pro 155 DTDPSANPLGQDVNE--GWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGLIG 232 (341) Q Consensus 155 ~TD~~anPllqDVNk--GWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dLla 232 (341) .+=.-.+|.+.=++. -| .....-|..+++++..+... ......|+ .+++..++.. T Consensus 139 ~~GLlN~p~v~~~~~~~~W-------------------~~~t~i~~Di~~~~~~l~~~---s~g~~~p~-~l~L~p~~~~ 195 (296) T protein:vir:10 139 IPSVFDYPNINNVVSGGSW-------------------SQPTTAVSDITSLLDIIETS---TNGQHRAT-HLLLPTTARR 195 (296) T ss_pred ceeEeecCCCccccccCCc-------------------cCHHHHHHHHHHHHHHHHHh---hCceecce-eEEeCHHHHH Confidence 211111222211110 12 01124466677666655531 11223455 4444666433 Q ss_pred HHHhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCC------CEEE--eccCCcEEEEecCcEEEEEEEcccc-cc Q lcl|Aclame:pro 233 AAQAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDN------AMVV--TIPENLQVLTQHGTAQRKAKHESDR-KR 303 (341) Q Consensus 233 ~~~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~------~ilV--T~l~NLsIY~Q~gs~RR~~~d~~~r-~r 303 (341) +++.....+-....+.|.+.+.++....+|.+... .+++ +..+|+.+=+-..- |+ ..-+++- .- T Consensus 196 -----~L~~~~~~~~~t~l~~ik~~~~~l~i~~~~~l~~a~~~g~~~~v~~~~~~~~~~~~v~~~~-~~-~~~e~~~l~~ 268 (296) T protein:vir:10 196 -----IMQNLVPGTSVSYGEFFRQNNSGVTVEFVQYLNDYNGTGTSAAIAYEKDPNNMAIEIPEAT-NA-LPAQPKDLHF 268 (296) T ss_pred -----HHhhccCCCCccHHHHHHHhcCCceEEEeeeeccCCCCcceEEEEEEcCCceEEEEcCcce-ee-ecccccCceE Confidence 22322223445667888899999999999999763 2333 66777777653322 22 2222211 12 Q ss_pred eecccc---ceeeccchheeeecccccc Q lcl|Aclame:pro 304 SKTHTG---AWKVTQWVCWKRSPLTTQK 328 (341) Q Consensus 304 ve~y~s---~YvVEdyg~~~~~~~~~~~ 328 (341) .+.|.+ +-+|=.-.|+.-.+-.+.+ T Consensus 269 ~~~~~~~~~Gv~i~~P~ai~~~dGI~~~ 296 (296) T protein:vir:10 269 KIPVTSKATGLIVYRPLTMAVMKGITFA 296 (296) T ss_pred EEeeEeeEEEEEEECCceeEEEeeeecC Confidence 222322 1122222344444433332 No 123 >protein:vir:94622 Length: 341 # NCBI annotation: PfWMP4_37 # Family: family:all:2203 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762667;genbank:gi:115304375;genbank:GeneID:5142322 Probab=32.36 E-value=1.4 Score=19.73 Aligned_cols=283 Identities=8% Similarity=0.008 Sum_probs=110.1 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhcceeecChHH-HHHHHHHHHhhHHHhcccceecchhhccceeecccccccC Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVAELFNVSPQL-ETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLYT 79 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~~~Fsv~P~~-~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~ia 79 (341) |+| -+..|+..++ .+..++| + |++ +..+....++++-|+..++-...+-.+|.+|.+-..|..+ T Consensus 1 ~~~-~~~~~~~~~~------------t~~v~~f-i-pei~s~~i~~~l~~~~v~~~~~~d~~~~~~~Gdtv~ip~~g~~~ 65 (341) T protein:vir:94 1 MAL-GNTITGPSIN------------TQRGQQF-I-PEQWLSEVQMFRKAKMLDTSVVKTWGAQVKKGDTFHVPRISELG 65 (341) T ss_pred Ccc-hhhhcccccc------------chhHHHH-H-HHHHHHHHHHHHHhhcchhhccccccccccCCceEEEeccCcce Confidence 663 3334433321 1223455 3 555 5556667777777888765433333458888775544332 Q ss_pred CCCCCCccc---cccCCCCcceEEEE-eeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhh--hHHHHhhcccccc Q lcl|Aclame:pro 80 GRKAGGRFT---KQVGVGGHKYKLAE-TDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFAL--DIMRIGWNGVSAE 153 (341) Q Consensus 80 grt~t~r~~---r~~~l~~~~Y~c~q-tn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~al--D~i~IGfnG~s~A 153 (341) -+.-+...+ .++.-...+..+.+ .-+...|. .+|.... ..||...+.+.....+|. |.-.++.. .+ T Consensus 66 ~~d~~~~~~i~~~~~~~~~~~itiD~~~~~~~~i~--d~d~~~~---~~d~~~~~~~~~~~aLA~~~D~~i~~~~---a~ 137 (341) T protein:vir:94 66 VEDKATDVPVGVQPVNDTDFVITVDTDRTTAVALD--DLLEIQA---SYDLRAPYLEAMGYALAKDMTGSILGLR---AA 137 (341) T ss_pred eeeecCCCccccccccCceEEEEEeeeeecceeec--hHHHHhh---ccchHHHHHHHHHHHHHHHHHHHHHHHh---hh Confidence 221111111 11122223344322 22333333 5555433 245665555544433332 33222221 11 Q ss_pred ccCChhhccchhhhhhhHHHHHHHhhcccccccccee-ecC--CchhhhHHHHHHHHHhcccchhhccCCCeEEEeChHH Q lcl|Aclame:pro 154 ADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYF-DET--NGDYRTLDAMASDIINNQIHPMFRNDPRLTVFVGSGL 230 (341) Q Consensus 154 ~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~-~g~--ggdy~nLDalv~d~~~~li~~~~r~~~dLVvivG~dL 230 (341) .+.. +........... .+. .-.| | .+.++.. .+|+..-...+.+++|+++. T Consensus 138 ~~~~---------------------~~~~~~~~~~~~~t~~~~~~~~---~-~i~~a~~-~Lde~~VP~~gR~lvv~P~~ 191 (341) T protein:vir:94 138 VQNT---------------------ASQNVFSSSNGAITGNGQAFSF---A-VFLAARR-LLLEADVPEEKIVLLISPGQ 191 (341) T ss_pred cccc---------------------ccCccccCccccccCchhhhhH---H-HHHHHHH-HHhhcCCCccCCEEEeCHHH Confidence 1111 111111111111 111 1223 2 3444443 45766544567888899864 Q ss_pred HHHHH--hHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCCc-------------------------- Q lcl|Aclame:pro 231 IGAAQ--AKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPENL-------------------------- 282 (341) Q Consensus 231 la~~~--~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~NL-------------------------- 282 (341) .+.-. -.+.+.. ...+....+-...++.|.+++.-+.+|....--. ..+. T Consensus 192 ~~~Ll~~~~~~~~~-~~g~~~l~~G~ig~i~G~~V~~Sn~lp~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 269 (341) T protein:vir:94 192 ESALFTIPQFISKD-FINNAPIAQGQIGSLMGVRVIRTSLIGNNSATGW-RNGAPTIAPAEATPGFTGSRYLPKQDSFTS 269 (341) T ss_pred HHHHhhchhhhhhh-ccccchhheeeeeeEeceEEEEeccccccccccc-cccccceecccccccccccccccccccccc Confidence 33210 0112211 1111111111123789999999999997653211 0000 Q ss_pred ---EEEEecCcEEEEEEEccc-------------ccceeccccceeeccc--hh--eeeeccccccCCcchh Q lcl|Aclame:pro 283 ---QVLTQHGTAQRKAKHESD-------------RKRSKTHTGAWKVTQW--VC--WKRSPLTTQKKSTSAL 334 (341) Q Consensus 283 ---sIY~Q~gs~RR~~~d~~~-------------r~rve~y~s~YvVEdy--g~--~~~~~~~~~~~~~~a~ 334 (341) .+.+|+....+----.|+ ..+...|+-..++..| || +-.......+.+.+.+ T Consensus 270 ~~~gl~~~~~av~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~~lrp~~~v~~~~~~~~~ 341 (341) T protein:vir:94 270 LPATFTGNSRPVHTAVMCHMDWAAAVVSKAPRVTQSFENREQVWLMVGRQAYGARLYRPLHAVNIHTTGDTV 341 (341) T ss_pred cEEEEEEecccccceeeecchhhhccccccccccccchhhhhhhhhhhhhhhcccccCcceeEEEecCcCCC Confidence 133333332222111111 1122222223344442 32 1000111222222222 No 124 >protein:vir:8885 Length: 347 # NCBI annotation: major capsid protein A # Family: family:all:975 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813774;genbank:gi:29366729;genbank:GeneID:1258837 Probab=31.60 E-value=1.5 Score=19.64 Aligned_cols=290 Identities=11% Similarity=0.040 Sum_probs=117.4 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhhc-ceeecC-hHHHHHHHHHHHhhHHHhcccceecchhhccceeeccccccc Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNVA-ELFNVS-PQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLY 78 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~~-~~Fsv~-P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~i 78 (341) |+. .+ +-.+++...|..+.+ ...++- ..=.-.+..+.+.+|-|+.++++-.++ .|..+-+-.-|.. T Consensus 1 ~a~----~~------~~~~~~~~~g~~~~~~d~~al~ie~~~geV~~~f~~~s~~~~~~~~r~i~--~G~sv~~~~iG~~ 68 (347) T protein:vir:88 1 MAN----AT------GGQQIGANQGKGQSAADKLALFLKVFGGEVLTAFVRRSVTMDKHMVRTIQ--NGKSASFPVMGRT 68 (347) T ss_pred CCC----cc------cchhhhccCCCCccccchHHHHHHHHHHHHHHHHHHHhhhhhcccccccc--CcceEEEeeecce Confidence 543 22 444454445543221 100110 111234455778889999999987654 5887777655554 Q ss_pred CCCCCCCccc--ccc-CCCCcceEEEEeee---eeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhh--hHHHHhh--c Q lcl|Aclame:pro 79 TGRKAGGRFT--KQV-GVGGHKYKLAETDS---CAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFAL--DIMRIGW--N 148 (341) Q Consensus 79 agrt~t~r~~--r~~-~l~~~~Y~c~qtn~---dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~al--D~i~IGf--n 148 (341) ....-+.+.. .+. .++..+-.|.=-+. +..| ..+|.|.. .-|+...+.+.....+|. |...++= . T Consensus 69 ~~~~~~~g~~l~~~~~~~~~~~~~i~ID~~~y~~~~V--dd~D~~q~---~~D~r~~~~~~~g~aLA~~~D~~i~~~l~~ 143 (347) T protein:vir:88 69 KGYYLAPGENLDDKRKDIKHSEKVIQIDGLLTSDVLI--YDIEDAMN---HYDVRAEYSAQLGEALAIAADGAVLAEMAK 143 (347) T ss_pred eeeeeccccCCCCCCCCCccceEEEEEechhhhhhhh--hhHHHHhh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3321111111 111 23334444432221 2223 47899987 346666666555544332 4332211 1 Q ss_pred cccccccCChhhccchhhhhhhHHHHHHHhhccccccccceeecCCch-------hhh-HHHHHHHHHhcccchhhccCC Q lcl|Aclame:pro 149 GVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFDETNGD-------YRT-LDAMASDIINNQIHPMFRNDP 220 (341) Q Consensus 149 G~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggd-------y~n-LDalv~d~~~~li~~~~r~~~ 220 (341) +...++..+..-. ||-. .. .+..+++++ -.. .| .+.++... +++..-... T Consensus 144 ~a~~~~~~~~~~~--------g~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~-~i~~a~~~-Lde~~VP~~ 201 (347) T protein:vir:88 144 LCNLPAASNENIA--------GLGQ--------AV----VLNIGAAADLVDVEARGKAILK-GLTLARAR-LTKNYVPAG 201 (347) T ss_pred hhccccccccccC--------Cccc--------cc----cccccccccccchhhhHHHHHH-HHHHHHHH-HhhcCCCCC Confidence 1111222222111 2111 00 011122221 111 23 33444443 476665566 Q ss_pred CeEEEeChHHHHHHHhHHHh-----ccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccCC-------------- Q lcl|Aclame:pro 221 RLTVFVGSGLIGAAQAKLYD-----KADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPEN-------------- 281 (341) Q Consensus 221 dLVvivG~dLla~~~~~l~n-----~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~N-------------- 281 (341) +.+++|+++. |..|++ ..+..+......-...++.|++++..|.+|-...--+++-+ T Consensus 202 gR~~vv~P~~----y~~Ll~~~~~~~~~~~~~~~~~~G~vg~i~G~~V~~s~nlp~~~~~~~~~~~~~~~t~~~~~~~~~ 277 (347) T protein:vir:88 202 DRRFYCAPED----YSAILSALMPNAANYAALIDPETGNIRNVMGFEVIEVPHLTVGGAGDNNPADGVAPTNQKHIFPAT 277 (347) T ss_pred CCEEEeCHHH----HHHHhcchhhhhhhhccccchhcceeeeeccceEEEeecccccccccccccccccccccccccccc Confidence 8899999863 233333 22222222111111235669999999999953322222111 Q ss_pred c------------EEEEecCcEEEE-EEE-cccccceeccccceeecc--chh--eeeeccccccCCcch Q lcl|Aclame:pro 282 L------------QVLTQHGTAQRK-AKH-ESDRKRSKTHTGAWKVTQ--WVC--WKRSPLTTQKKSTSA 333 (341) Q Consensus 282 L------------sIY~Q~gs~RR~-~~d-~~~r~rve~y~s~YvVEd--yg~--~~~~~~~~~~~~~~a 333 (341) + .+++|....=-- ..| ..|.-|-+.|++.+++-- ||+ +-....-.++...+| T Consensus 278 ~~~~~~~d~~~~~~l~~~~~a~g~v~~~d~~~e~~r~~~~~~d~i~~~~~~G~~~~rPe~a~~~~~~~a~ 347 (347) T protein:vir:88 278 ATGDDRVAQNNVVGLFNHRSAVGTVKLKDMALERARRPEFQADQIIGKYAMGHGGLRPEAAGALVFTPAA 347 (347) T ss_pred cccccccccCcEEEEEechhhhhheecccceeeeeechhhHHHHhhhhhhhcCceeccceEEEEEeCCCC Confidence 1 122222210000 000 012222223333333322 232 111112222223333 No 125 >protein:vir:80213 Length: 334 # NCBI annotation: capsid protein # Family: family:all:2806 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522884;genbank:gi:158345177;genbank:GeneID:5687476 Probab=29.99 E-value=1.6 Score=19.45 Aligned_cols=294 Identities=14% Similarity=0.039 Sum_probs=120.9 Q ss_pred CCccc-cHHHHHHHHHHHHHHHHhhCchhh-cceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeeccccccc Q lcl|Aclame:pro 1 MSQIL-TQSAREYMDNFAQQLAKSYGVSNV-AELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLY 78 (341) Q Consensus 1 m~~~M-~~~tr~~~~~y~~~~A~~ngv~~~-~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~i 78 (341) |+-.= +..|+.. .+..++..+. -+.|+ -....+.++++-|+.+.++-.++ .|..+-+-.-|.. T Consensus 1 m~~~~~~~~t~~~-------~~~~~~~~~l~le~~~------geV~~af~~~s~~~~~~~~r~i~--~G~s~~~~~iG~~ 65 (334) T protein:vir:80 1 MTYPAANTHTRPG-------WGGANSDVSLHIEEHL------GLVDASFMYSSKFASWMNVRSLR--GTNQLRVDRVGAS 65 (334) T ss_pred CCCCcCCCccccc-------cccccchheehhhhhh------hHHHHHHHHhhhhhccceeeecc--ccceEEEeeecce Confidence 33100 0111100 1111111010 12332 34467888899999988887653 2666665443332 Q ss_pred CC--CCCCCccccccCCCCcceEEEEee-eeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhh--hHHHHhhcccccc Q lcl|Aclame:pro 79 TG--RKAGGRFTKQVGVGGHKYKLAETD-SCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFAL--DIMRIGWNGVSAE 153 (341) Q Consensus 79 ag--rt~t~r~~r~~~l~~~~Y~c~qtn-~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~al--D~i~IGfnG~s~A 153 (341) +- +++. .......+...+-.|.=-+ .=++..-..+|.|-. .-||...+.+.+-..+|- |+-.+.= ..++| T Consensus 66 ~~~~~~~g-~~l~~~~~~~~~~~l~ID~~l~~~~~VddiD~~q~---~~D~rse~~~~~G~aLA~~~D~~~~~~-l~kaa 140 (334) T protein:vir:80 66 TIAGRKAG-EELVVQKNVSDKLNLTVDTVLYARHFFDKFDEWTS---NLDVRKETAREDGIALARQYDQACIIQ-LQKCG 140 (334) T ss_pred eeeeecCC-CCCCCCCcccCceEEEEeeeeehhhhHhhHHHHhc---CcchHHHHHHHHHHHHHHHHHHHHHHH-HHHhh Confidence 11 1111 1111111222333333211 112222347888886 568999999988888887 7533211 11222 Q ss_pred ccCChhhccc-hhhhhhhHHHHHHHhhccccccccceeecCCchhhhHHHHHHHHHhcccchhhccC---CCeEEEeChH Q lcl|Aclame:pro 154 ADTDPSANPL-GQDVNEGWIAFVKNRKASQVVDVDVYFDETNGDYRTLDAMASDIINNQIHPMFRND---PRLTVFVGSG 229 (341) Q Consensus 154 ~~TD~~anPl-lqDVNkGWlq~~Re~~~~~v~~~~~~~~g~ggdy~nLDalv~d~~~~li~~~~r~~---~dLVvivG~d 229 (341) ....|..++. +.| |=. ....-.| ...+...+-..|-....++.+. +++.--.+ .+.|++|+++ T Consensus 141 ~~~~~~~~~~~~~~---G~~--------~~~~~~g-~~~~~~~~~~~l~~a~~~a~~~-L~e~dvp~~~~~~R~~vv~P~ 207 (334) T protein:vir:80 141 DFLAPAHLKPAFHD---GIL--------LPSTISG-LAADAAADADVLVAAHRQGVEA-MVFRDLGDQLMSEGVTLLDPV 207 (334) T ss_pred hhcccccccccccC---Ccc--------eeecccc-cccchhhhHHHHHHHHHHHHHH-HHhcCCCCCcCCceEEEeChH Confidence 2222222111 111 000 0000000 0011112222233334566654 45543332 3689999975 Q ss_pred ----HHHHHHhHHHhcc--ChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEeccC---C--------cE-EEEecCcE Q lcl|Aclame:pro 230 ----LIGAAQAKLYDKA--DKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTIPE---N--------LQ-VLTQHGTA 291 (341) Q Consensus 230 ----Lla~~~~~l~n~~--~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~l~---N--------Ls-IY~Q~gs~ 291 (341) |+.++ +++|.. ..+.-...+..-..++.|.+++.-|.||...+--..+- | .. +++|+... T Consensus 208 ~y~~Ll~~~--r~~n~d~~~s~~~~~~~~g~i~~v~G~~V~~Sn~~P~~~~t~~~~g~~~~~~agd~t~~~~~~~~~~Al 285 (334) T protein:vir:80 208 IFSFLLEHD--RLMNVEFGAKEGGNSFVGGRIAMLNGVRVVETPRFPQSAITANALGADFNVTDAEVRRKMITFIPSMAL 285 (334) T ss_pred HHHHHhccc--ccccceeccccccccccceeEEEEeceEEEeecCCCCccccccccccccccccccccceEEEEEeCceE Confidence 34332 234431 11111111111134688999999999997753322211 1 11 23333321 Q ss_pred EE-EEEE-cccccceecccc----ceeecc-----chheeeeccccccC Q lcl|Aclame:pro 292 QR-KAKH-ESDRKRSKTHTG----AWKVTQ-----WVCWKRSPLTTQKK 329 (341) Q Consensus 292 RR-~~~d-~~~r~rve~y~s----~YvVEd-----yg~~~~~~~~~~~~ 329 (341) =- ++.+ ..|.-+=+.+.+ +|.+.. -.|+...+++..-. T Consensus 286 ~t~~~~~~~~e~~~~~~~~~d~i~~~~a~G~g~lRPeaa~vv~~~~~~~ 334 (334) T protein:vir:80 286 ISAQVHPVSAQFWEEKKDFGHYLDTFQSYNIGQRRPDAVAVHDITVTNP 334 (334) T ss_pred EEEEEeecceeeeechhhHHHHHHHHHHcCCceeccceEEEEEEeeecC Confidence 00 0010 111111112222 222222 23667777665532 No 126 >protein:vir:78935 Length: 335 # NCBI annotation: capsid protein # Family: family:all:2806 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522824;genbank:gi:158345059;genbank:GeneID:5687425 Probab=28.07 E-value=1.8 Score=19.21 Aligned_cols=295 Identities=13% Similarity=0.102 Sum_probs=127.9 Q ss_pred CCccccHHHHHHHHHHHHHHHHhhCchhh-cceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeeccccccc- Q lcl|Aclame:pro 1 MSQILTQSAREYMDNFAQQLAKSYGVSNV-AELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVSGLY- 78 (341) Q Consensus 1 m~~~M~~~tr~~~~~y~~~~A~~ngv~~~-~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~g~i- 78 (341) |+- .++.||.-+ +..++..+. -+.|+ -...++.+.++-|+.+.++-.++ .|..+-+-.-|.. T Consensus 1 ms~-~~~~t~~~~-------~~s~~d~al~le~f~------geV~~af~~~s~~~~~~~~rti~--~g~s~~~~~iG~~~ 64 (335) T protein:vir:78 1 MSF-LNDLTRPNY-------AGKNADVDIHLEEHL------GIVDKHFAYTSKFAPLMNIRDLR--GSNVVRLDRLGNVE 64 (335) T ss_pred CCc-ccccccccc-------ccccchhhhhhhhhh------hHHHHHHHHhhhhccccceeeec--cceeEEEeeeeeee Confidence 764 456666433 112221111 13443 34456778899999988887653 2444433222211 Q ss_pred -CCCCCCCccccccCCCCcceEEEEee-eeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhh--hHHHHhhccccccc Q lcl|Aclame:pro 79 -TGRKAGGRFTKQVGVGGHKYKLAETD-SCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFAL--DIMRIGWNGVSAEA 154 (341) Q Consensus 79 -agrt~t~r~~r~~~l~~~~Y~c~qtn-~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~al--D~i~IGfnG~s~A~ 154 (341) ..+++.. ..........+..+.=.. .=++..-..||.|-. +=|+-+.+.+.+-+.+|- |+-.+ =...++|. T Consensus 65 ~~~~~pG~-~l~~~~~~~~k~~itID~ll~a~~~VddlDe~~~---~yDvR~e~s~~~G~aLA~~~Dq~~~-~~l~~aa~ 139 (335) T protein:vir:78 65 AKGRRAGE-ELERSRVVNDKWNLTVDTLLYLRHQFDHQDEWTQ---SFDMRKEVAELDGQELARKFDQACL-IQVIKAAA 139 (335) T ss_pred ecccccCc-ccCCCCcccCCeEEEecceeechhhHhhHHHhhc---CchhHHHHHHHHHHHHHHHHHHHHH-HHHHhhcc Confidence 2222211 000001111222211100 012222347888876 347888888887777776 65432 12222233 Q ss_pred cCChhhccchhhhhhhHHHHHHHhhccccccccceee-cCCchhhhHHHHHHHHHhcccchhhccC---CCeEEEeChH- Q lcl|Aclame:pro 155 DTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFD-ETNGDYRTLDAMASDIINNQIHPMFRND---PRLTVFVGSG- 229 (341) Q Consensus 155 ~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~-g~ggdy~nLDalv~d~~~~li~~~~r~~---~dLVvivG~d- 229 (341) ...|...|. ||. ++- .....+++ ....++..|-.++.++.+.|+ +..-.+ .|.|++|.++ T Consensus 140 ~~a~~~~~~------~~~-------~G~-~~~~~~tg~~~~~~~~~l~~a~~~a~~~l~-ekdvP~~~~~~rv~vv~P~~ 204 (335) T protein:vir:78 140 MDAPVDLED------AFS-------PGV-LEKLDLTGLTAKEAAEKIVRMHRRVVETFI-ERDLGDAVYSEGLTPMSPRV 204 (335) T ss_pred cccccccCC------CcC-------CCc-ceeeeeccccccccHHHHHHHHHHHHHHHH-hccCCCCCCCccEEEeChHH Confidence 333333221 111 000 00001111 223577788889999888764 432221 2589999975 Q ss_pred ---HHHHHHhHHHhccChhHHHHHHHHH---HHhhcCcccccCCcCCCCCEEEeccCC------------cEEEEecCcE Q lcl|Aclame:pro 230 ---LIGAAQAKLYDKADKPSEQIAAQKL---DKTIAGRPAYVPPFLPDNAMVVTIPEN------------LQVLTQHGTA 291 (341) Q Consensus 230 ---Lla~~~~~l~n~~~~ptE~~a~~~i---~k~igGlpa~~vPffP~~~ilVT~l~N------------LsIY~Q~gs~ 291 (341) |+.++ +|+|..=..+.-. .... .-++.|.|++..|.||.+.+--++|.| --+++|.... T Consensus 205 y~~Ll~~~--~l~n~~~~~s~~~-~~~~~g~v~~v~Gv~V~~Sn~lP~~~~t~~~lg~a~n~~~~d~~~~~~~~~~~~Al 281 (335) T protein:vir:78 205 FSLLLEHD--KLMSVEYQATGAT-NDYVKSRVAILNGVKVLETPRFATKAISAHPLGRHFNVSAEEAERQIALFLPSKTL 281 (335) T ss_pred HHHHhccc--ccccccccccccc-cccccceeEEeeceEEEeeccCCCCCCccccccccCCcccccccceEEEEEecceE Confidence 22221 2333210111000 0011 125889999999999988755555543 2233333310 Q ss_pred E-EEEEE-cccc----cceeccccceeeccc-----hheeeeccccccCCcchhcccc Q lcl|Aclame:pro 292 Q-RKAKH-ESDR----KRSKTHTGAWKVTQW-----VCWKRSPLTTQKKSTSALNHRS 338 (341) Q Consensus 292 R-R~~~d-~~~r----~rve~y~s~YvVEdy-----g~~~~~~~~~~~~~~~a~~~~~ 338 (341) = =++.+ -++. ++..++--+|....- .|+.+.+++.. +|.+.-. T Consensus 282 ~t~~~~~~~~e~~~~~~~~~~~i~~~~a~G~g~lRPe~a~~i~~tg~----~~~~~~~ 335 (335) T protein:vir:78 282 ITAQVAPVQAKLWEDHDQFSWVLDTFQMYNIGARRPDTAGAIELKGI----EAFDITA 335 (335) T ss_pred EEEEEEecccceeeccchhhHhhhHHHHcCCcccCcceEEEEEecCC----CcccccC Confidence 0 00011 1111 112222223333221 25555554432 2222222 No 127 >protein:vir:3364 Length: 347 # NCBI annotation: major capsid protein 10A # Family: family:all:975 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523335;genbank:gi:17570826;genbank:GeneID:927448 Probab=22.18 E-value=2.5 Score=18.42 Aligned_cols=294 Identities=9% Similarity=0.009 Sum_probs=124.4 Q ss_pred CCccccHH---HHHHHHHHHHHHHHhhCchh--hcceeecChHHHHHHHHHHHhhHHHhcccceecchhhccceeecccc Q lcl|Aclame:pro 1 MSQILTQS---AREYMDNFAQQLAKSYGVSN--VAELFNVSPQLETKLRAAITESAEFLKMITVTTVDQIEGQVVDVGVS 75 (341) Q Consensus 1 m~~~M~~~---tr~~~~~y~~~~A~~ngv~~--~~~~Fsv~P~~~q~L~~~iqess~FL~~Inv~~V~~~~Ge~i~lgv~ 75 (341) |..++--. ||.- .+..+|-.. .-+.|+ -.+..+.+.+|-|+.+.++-.+. .|..+-+-.- T Consensus 1 ~~~~~~~~~~~t~~g-------~~~~~~~~~al~ie~~~------g~V~~~f~~~s~~~~~v~~r~~~--~G~sv~i~~i 65 (347) T protein:vir:33 1 MANIQGGQQIGTNQG-------KGQSAADKLALFLKVFG------GEVLTAFARTSVTMPRHMLRSIA--SGKSAQFPVI 65 (347) T ss_pred CCCCccCcccccccc-------cCCcccchHHHHHHHHH------HHHHHHHHHHHhhhhhhcccccc--ccceeEeeec Confidence 54322211 2211 111222111 113343 55666888889999999886554 4888887666 Q ss_pred cccCCCCCCCcccc---ccCCCCcceEEE--EeeeeeeecHHHHHHHHhccCchhHHHHHHHHHHHHHhhh--HHHHh-- Q lcl|Aclame:pro 76 GLYTGRKAGGRFTK---QVGVGGHKYKLA--ETDSCAAITWAMLCQWANQGGRDQFMKHLTEFSNQMFALD--IMRIG-- 146 (341) Q Consensus 76 g~iagrt~t~r~~r---~~~l~~~~Y~c~--qtn~dt~i~y~~lDaWA~~g~~~dF~~~i~~~i~~~~alD--~i~IG-- 146 (341) |..+-..-+....- +..+...+..|. +.-+.. ..-..+|.|-. .-|+...+.+.....+|.. .-.+. T Consensus 66 G~~t~~~~~~g~~l~~~~~~~~~~e~~ltiD~~~y~~-~~VddiD~~q~---~~D~~~~~~~~~g~aLA~~~D~~i~~~l 141 (347) T protein:vir:33 66 GRTKAAYLKPGENLDDKRKDIKHTEKVIHIDGLLTAD-VLIYDIEDAMN---HYDVRAEYTAQLGESLAMAADGAVLAEL 141 (347) T ss_pred cceeeeeecCCCCCCCCCCCCccceEEEEechhhhhh-HHHhhHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHH Confidence 65544322221111 112233333332 211111 11237888876 4467666666555555432 22221 Q ss_pred --hccccccccCChhhccchhhhhhhHHHHHHHhhccccccccceee-cCCchhhhHHHHHHHHHhcccchhhccCCCeE Q lcl|Aclame:pro 147 --WNGVSAEADTDPSANPLGQDVNEGWIAFVKNRKASQVVDVDVYFD-ETNGDYRTLDAMASDIINNQIHPMFRNDPRLT 223 (341) Q Consensus 147 --fnG~s~A~~TD~~anPllqDVNkGWlq~~Re~~~~~v~~~~~~~~-g~ggdy~nLDalv~d~~~~li~~~~r~~~dLV 223 (341) -.+.+ ..+ ....|- .||--.. +....+.+...+ .+.+ .++-..+.++... +++..-...+.+ T Consensus 142 ~~~~~~~--~~~-~~~~~~-----~~~~~~~----~~~~~~tg~~~d~~~~a--~~i~~~i~~a~~~-Lde~~VP~~gR~ 206 (347) T protein:vir:33 142 AGLVNLP--DGS-NENIEG-----LGKPTVL----TLVKPTTGSLTDPVELG--KAIIAQLTIARAS-LTKNYVPAADRT 206 (347) T ss_pred HHhhhhh--ccc-cccccc-----ccccccc----cccccccccccchhhhH--HHHHHHHHHHHHH-HhhcCCCccCcE Confidence 11100 000 000000 0111000 000000111111 0111 1333445555553 476666566889 Q ss_pred EEeChHHHHHH--HhHHHhccChhHHHHHHHHHHHhhcCcccccCCcCCCCCEEEec----------------------c Q lcl|Aclame:pro 224 VFVGSGLIGAA--QAKLYDKADKPSEQIAAQKLDKTIAGRPAYVPPFLPDNAMVVTI----------------------P 279 (341) Q Consensus 224 vivG~dLla~~--~~~l~n~~~~ptE~~a~~~i~k~igGlpa~~vPffP~~~ilVT~----------------------l 279 (341) ++|+++....- --++.+..-..++. ..+-...++.|.+++..|.+|.+.+--+. + T Consensus 207 ~vv~P~~y~~Ll~~~~~~~~d~~~~~~-~~~G~V~~i~G~~V~~Sn~lp~~~~~~~~~~~~ag~~~~~~~~~~~~~~~a~ 285 (347) T protein:vir:33 207 FYTTPDNYSAILAALMPNAANYQALLD-PERGTIRNVMGFEVVEVPHLTAGGAGDTREDAPADQKHAFPATSSTTVKVAL 285 (347) T ss_pred EEeCHHHHHHHhccccccccccccccc-cccceeEEEeceeEEEecccccCccccccccccccccccccCCcccceeccc Confidence 99998642210 00122211111111 11111236899999999999987642221 1 Q ss_pred CCcE-EEEecCcE-EEEEEE-cccccceeccccceeeccc--h-------heeeeccccccC Q lcl|Aclame:pro 280 ENLQ-VLTQHGTA-QRKAKH-ESDRKRSKTHTGAWKVTQW--V-------CWKRSPLTTQKK 329 (341) Q Consensus 280 ~NLs-IY~Q~gs~-RR~~~d-~~~r~rve~y~s~YvVEdy--g-------~~~~~~~~~~~~ 329 (341) +++. +.||+... --+..+ .-|+.|-+.|+.++|+--| | |+.+..+..+.+ T Consensus 286 ~~~~gl~~h~~A~g~v~~~~~~~e~~r~~~~~~d~i~~~~~~G~~vlrP~~av~i~~~~~~~ 347 (347) T protein:vir:33 286 DNVVGLFQHRSAVGTVKLKDLALERARRANYQADQIIAKYAMGHGGLRPEAAGAIVLPKVSE 347 (347) T ss_pred cceeeeeecchhheeeeeeceeeeeccchhhhhHhhhhhhhcCCceecccceEEEecCCCCC Confidence 2221 23333321 112222 3455555666666666653 4 344444444433 Done!