BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:268|NCBI_annot:putative terminase, ATPase subunit|genbank:acc:NP_536648;genbank:gi:17975126;genbank:GeneI D:929082 (605 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: puta... 1272 0.0 gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: pu... 686 0.0 gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf... 608 e-176 gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: ter... 606 e-175 gi|2683|lcl|protein:vir:98854 Length: 603 # NCBI annotation: hyp... 592 e-171 gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: pre... 489 e-140 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 488 e-140 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 488 e-140 gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp... 485 e-139 gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: te... 464 e-133 gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP... 453 e-129 gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP... 453 e-129 gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP... 452 e-129 gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3... 441 e-125 gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: te... 432 e-123 gi|13742|lcl|protein:vir:1826 Length: 248 # NCBI annotation: W p... 117 3e-28 gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: lar... 52 1e-08 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 35 0.003 gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: te... 33 0.008 gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unkn... 32 0.017 gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: sim... 30 0.062 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 30 0.090 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 29 0.12 gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: P... 27 0.66 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 26 1.6 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 25 1.8 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 25 1.9 gi|108|lcl|protein:vir:1985 Length: 551 # NCBI annotation: putat... 25 2.8 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 25 3.1 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 24 4.3 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 24 5.6 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 24 6.6 >gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: putative terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536648;genbank:gi:17975126;genbank:GeneID :929082 Length = 605 Score = 1272 bits (3291), Expect = 0.0, Method: Compositional matrix adjust. Identities = 605/605 (100%), Positives = 605/605 (100%) Query: 1 MAYSPEIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIAN 60 MAYSPEIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIAN Sbjct: 1 MAYSPEIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIAN 60 Query: 61 RIQTLLEVENPSKPQLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGS 120 RIQTLLEVENPSKPQLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGS Sbjct: 61 RIQTLLEVENPSKPQLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGS 120 Query: 121 PKAESGTQTGDSGKQSAPSGKRKKVKNDVSEITEADFKLWHDSLFAYQHTMRNNLHQRTR 180 PKAESGTQTGDSGKQSAPSGKRKKVKNDVSEITEADFKLWHDSLFAYQHTMRNNLHQRTR Sbjct: 121 PKAESGTQTGDSGKQSAPSGKRKKVKNDVSEITEADFKLWHDSLFAYQHTMRNNLHQRTR 180 Query: 181 NILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITG 240 NILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITG Sbjct: 181 NILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITG 240 Query: 241 NPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYF 300 NPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYF Sbjct: 241 NPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYF 300 Query: 301 STPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAK 360 STPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAK Sbjct: 301 STPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAK 360 Query: 361 GGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQDYKPNAAR 420 GGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQDYKPNAAR Sbjct: 361 GGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQDYKPNAAR 420 Query: 421 PFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVFE 480 PFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVFE Sbjct: 421 PFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVFE 480 Query: 481 RFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNRLQFDA 540 RFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNRLQFDA Sbjct: 481 RFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNRLQFDA 540 Query: 541 GMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLDHSTQRKST 600 GMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLDHSTQRKST Sbjct: 541 GMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLDHSTQRKST 600 Query: 601 WQMAA 605 WQMAA Sbjct: 601 WQMAA 605 >gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: putative terminase large subunit # Family: family:all:169 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285645;genbank:gi:148727151;genbank:Ge neID:5220131 Length = 604 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/609 (55%), Positives = 431/609 (70%), Gaps = 22/609 (3%) Query: 1 MAYSPEIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIAN 60 MAY EIR AA+ LYLK WTP+EI DEL LNS RIIYYWA+K GWRD+L E+ +++AI Sbjct: 1 MAYPEEIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINR 60 Query: 61 RIQTLLEVENPSKPQLDMLDRLINHHVKLK----KLRATEQPTQPNEAGTVSAQSGAHNS 116 R+Q LL E + + + LDRLI HHV LK K EQ + A + Sbjct: 61 RVQVLLHREKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALK------------AQRA 108 Query: 117 KSGSPKAESGTQTGDSGKQSAPSGKRKKVKNDVSEITEADFKLWHDSLFAYQHTMRNNLH 176 + P G + +S + KK KN++ +T DF W +LF YQ +R + Sbjct: 109 EGSEPGPSRGKREHNS-QGGGGRKGGKKAKNEIGHLTADDFTEWLGTLFGYQLRVREAKN 167 Query: 177 Q----RTRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKE 232 RTRNILKSRQIG TYYFAGEALE AILTG NQIFLSA+RAQA+VFR YI IA+ Sbjct: 168 DPALPRTRNILKSRQIGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQT 227 Query: 233 FLGIEITGNPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATH 292 FLG+ +TGNP LSNGAELH+ STN +AQS G+VYIDEYFWI F++L+ VASAMAT Sbjct: 228 FLGVTLTGNPIVLSNGAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQ 287 Query: 293 KKWRKTYFSTPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYV 352 WRKTYFSTPSSK+H AY FWTG++W+G + +R I+FP D+LRDGGR+CPD+QWRYV Sbjct: 288 SHWRKTYFSTPSSKVHEAYRFWTGDRWKGQRPSRVAIDFPGEDDLRDGGRICPDRQWRYV 347 Query: 353 VTIEDAAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQ 412 +TIEDA + GC L DIEEL++EY E F+ L+MC F+D A S+F+F +ER VD W+ Sbjct: 348 ITIEDAIRLGCHLIDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTRWE 407 Query: 413 DYKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQA 472 DYKP PFG REVW+GYDPSRTRDNA L+VVAPP VA E+FRVLEKH WRGL+FQ+QA Sbjct: 408 DYKPGRPDPFGRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQA 467 Query: 473 SEISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIID 532 EI ++ ++F VTYLG+D++GIGAGV+DLL I+YS E+K+RLV+KMID+++ Sbjct: 468 QEIERIAKKFRVTYLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVE 527 Query: 533 GNRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLD 592 NR+++D+ ++ +AF+AIKR +T G MTF+A R GHAD F+A++HA+ NEPLD Sbjct: 528 ANRIEWDSSDRDIPLAFLAIKR-STTGGGQMTFRAARDNVTGHADVFFAIAHAVANEPLD 586 Query: 593 HSTQRKSTW 601 +RKSTW Sbjct: 587 THRKRKSTW 595 >gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf15 # Family: family:all:169 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043485;genbank:gi:9628620;genbank:GeneID: 1261142 Length = 607 Score = 608 bits (1568), Expect = e-176, Method: Compositional matrix adjust. Identities = 298/603 (49%), Positives = 417/603 (69%), Gaps = 15/603 (2%) Query: 3 YSPEIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRI 62 Y E+ AA+ LYLK +TP+EIA+EL LNS R IYYWA+K+ WR++L E I+E IA RI Sbjct: 14 YDDEVIYAAKFLYLKKYTPKEIAEELGLNSRRPIYYWAEKYNWRNLLSESGIEELIALRI 73 Query: 63 QTLLEVENPSKPQLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSK-SGSP 121 TL E EN S ++ L+ LI+ ++ KK RA V+A+S +++ SG+ Sbjct: 74 ITLTERENKSDQEIKELEALIDKDIQYKKQRAAT-------VAKVTAKSAVNSADVSGNE 126 Query: 122 KAESGTQTGDSGKQSAPSGKRKKVKNDVSEITEADFKLWHDSLFAYQHTMRNNLHQRTRN 181 +A + + GD K K+K+VKND+S +T + + DSLF YQ +R+N H RN Sbjct: 127 RAFADSGDGDERK------KKKRVKNDISHVTPEMCQPFIDSLFDYQKHIRSNKHHDVRN 180 Query: 182 ILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITGN 241 ILKSRQIGATYYF+ EALE AI +GDNQIFLSAS+ QA++F+ YIV +A+E+ G+E+TGN Sbjct: 181 ILKSRQIGATYYFSFEALEDAIFSGDNQIFLSASKRQAEIFKNYIVKMAREYFGVELTGN 240 Query: 242 PSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYFS 301 P LSNGAELH+LSTN T+Q GHVY DEY WI F + VASAMATH+KWR+TYFS Sbjct: 241 PIILSNGAELHFLSTNKNTSQGNSGHVYGDEYAWIRDFQRFDDVASAMATHEKWRETYFS 300 Query: 302 TPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAKG 361 TPSSK H +YSFW+G+ WR RKN+ FPTF ELRDGGRLCPD QWRYVVTIEDA KG Sbjct: 301 TPSSKFHESYSFWSGDNWRDGDPKRKNVPFPTFAELRDGGRLCPDGQWRYVVTIEDALKG 360 Query: 362 GCD-LFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQDYKPNAAR 420 G D LF+IE+L++ YS+ FN L+MC+++D A SIF ++ +C VD W+D+ P A R Sbjct: 361 GADKLFNIEKLKQRYSKYAFNQLYMCIWIDDADSIFNVKQLLKCGVDIAKWKDFNPKADR 420 Query: 421 PFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVFE 480 PFG REVW G+DP+ + D A +++APP + EK+R+L ++ W GLS+ +QA++I ++E Sbjct: 421 PFGDREVWGGFDPAHSGDGASFVIIAPPALPGEKYRMLARYQWHGLSYVYQANQIRALYE 480 Query: 481 RFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNRLQFDA 540 ++N+TY+GID TG+G GV++L+ R AI Y+ E+K +V+K+ D+++ ++++ Sbjct: 481 KYNMTYIGIDATGVGYGVYELVKEFARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSE 540 Query: 541 GMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLDHSTQRKST 600 + +F+ IK +T SGN MTF AER+ + HAD F+A+ +A+ + L +++ Sbjct: 541 SELDIVPSFLMIKHQSTKSGNTMTFTAERTVKTQHADVFFAICNAINKKSLSDKPRKRRR 600 Query: 601 WQM 603 W + Sbjct: 601 WSV 603 >gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536821;genbank:gi:17981830;genbank:GeneID :929209 Length = 607 Score = 606 bits (1562), Expect = e-175, Method: Compositional matrix adjust. Identities = 299/602 (49%), Positives = 411/602 (68%), Gaps = 13/602 (2%) Query: 3 YSPEIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRI 62 Y E+ AA+ LYLK +TP+EIA+EL LNS R IYYWA+K+ WR+++ E I+E IA RI Sbjct: 14 YDDEVIYAAKFLYLKKYTPKEIAEELGLNSTRPIYYWAEKYNWRNLISESGIEELIALRI 73 Query: 63 QTLLEVENPSKPQLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGSPK 122 TL E EN S ++ L+ LI+ ++ KK RA V+A+S A NS S Sbjct: 74 ITLTERENKSDQEIKELEALIDKDIQYKKQRAAT-------VAKVTAKS-AVNSADVSSS 125 Query: 123 AESGTQTGDSGKQSAPSGKRKKVKNDVSEITEADFKLWHDSLFAYQHTMRNNLHQRTRNI 182 S +GD + K+K+VKND+S ++ + + DSLF YQ +R N H RNI Sbjct: 126 DRSFADSGDGDEHK----KKKRVKNDISHVSPEMCQPFIDSLFDYQKHIRANKHHDVRNI 181 Query: 183 LKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITGNP 242 LKSRQIGATYYF+ EALE AI +GDNQIFLSAS+ QA++F+ YIV +A+E+ G+E+TGNP Sbjct: 182 LKSRQIGATYYFSFEALEDAIFSGDNQIFLSASKRQAEIFKNYIVKMAREYFGVELTGNP 241 Query: 243 STLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYFST 302 LSNGAELH+LSTN T+Q GHVY DEY WI F N VASAMATH KWR+TYFST Sbjct: 242 IILSNGAELHFLSTNKNTSQGNSGHVYGDEYAWIRDFQRFNDVASAMATHAKWRETYFST 301 Query: 303 PSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAKGG 362 PSSK H +YSFW+G+ WR RKN+ FPTF ELRDGGRLCPD QWRYVVTIEDA KGG Sbjct: 302 PSSKFHESYSFWSGDNWRDGDPKRKNVPFPTFAELRDGGRLCPDGQWRYVVTIEDALKGG 361 Query: 363 CD-LFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQDYKPNAARP 421 LF+IE+L++ YS+ FN L+MCV++D A SIF +++ +C VD W+D+ P A RP Sbjct: 362 AGTLFNIEKLKQRYSKYAFNQLYMCVWIDDADSIFTVHQLLKCGVDISKWKDFNPKADRP 421 Query: 422 FGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVFER 481 FG REVW G+DP+ + D A +++APP + EK+RVL ++ W GLS+ +QA++I ++E+ Sbjct: 422 FGDREVWGGFDPAHSGDGASFVIIAPPALPSEKYRVLARYQWNGLSYVYQANQIRALYEK 481 Query: 482 FNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNRLQFDAG 541 +N+TY+GID TG+G GV++L+ R AI Y+ E+K +V+K+ D+++ ++++ Sbjct: 482 YNMTYIGIDATGVGYGVYELVKEFARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSES 541 Query: 542 MKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLDHSTQRKSTW 601 + +F+ IK +T SGN MTF AER+ + HAD F+A+ +A+ + L +++ W Sbjct: 542 ELDIVPSFLMIKHQSTKSGNTMTFTAERTVKTQHADVFFAICNAINKKSLSDKPRKRRGW 601 Query: 602 QM 603 + Sbjct: 602 SV 603 >gi|2683|lcl|protein:vir:98854 Length: 603 # NCBI annotation: hypothetical protein # Family: family:all:169 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654730;genbank:gi:109302915;genbank:GeneI D:4156059 Length = 603 Score = 592 bits (1525), Expect = e-171, Method: Compositional matrix adjust. Identities = 295/603 (48%), Positives = 413/603 (68%), Gaps = 14/603 (2%) Query: 3 YSPEIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRI 62 Y E+ +A+ LYLK WTP EIA EL+LNS R IYYWA+K+ WR+++ E I+E IA RI Sbjct: 13 YDDEVIYSAKFLYLKKWTPNEIAKELSLNSARPIYYWAEKYNWRNLINENGIEELIALRI 72 Query: 63 QTLLEVENPSKPQLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGSPK 122 TL E EN + ++ L+ LI+ ++ KK RA + + A T+S G Sbjct: 73 ITLTERENKTDQEIKELEALIDKDIEYKKQRAKKAQSAQKSAVTLSESFGDF-------- 124 Query: 123 AESGTQTGDSGKQSAPSGKRKKVKNDVSEITEADFKLWHDSLFAYQHTMRNNLHQRTRNI 182 A+SG G+ G S +K+ KND+S +T + + DSLF YQ R N H RNI Sbjct: 125 ADSGH--GNDGDNKKKS--KKRAKNDISHVTPEMVQPFIDSLFDYQKHCRANKHHSVRNI 180 Query: 183 LKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITGNP 242 LKSRQIGATYYFA EALE AI TGDNQIFLSAS+ QA++F+ YI+ +A+ + +E+ G+P Sbjct: 181 LKSRQIGATYYFAFEALEDAIFTGDNQIFLSASKRQAEIFKTYIIKMARAYFDVELKGSP 240 Query: 243 STLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYFST 302 LSNGAELH+L+TN T+Q GHVY DEY WI F+ N V+SAMATHK WR+TYFST Sbjct: 241 IILSNGAELHFLATNANTSQGNSGHVYGDEYAWIRDFERFNTVSSAMATHKHWRETYFST 300 Query: 303 PSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAKGG 362 PSSK HP+Y+FW+G+ W+ R N+ FP+F+ELRDGGR CPD WRYV+TIEDA KGG Sbjct: 301 PSSKFHPSYAFWSGDMWKEGDPKRANVVFPSFEELRDGGRFCPDGTWRYVITIEDALKGG 360 Query: 363 CD-LFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQDYKPNAARP 421 LFDI+ L+++YS+ F LFMCV+VD A SIF K+ +C VD W+D+ PN ARP Sbjct: 361 AGVLFDIDALKQKYSKYAFAQLFMCVWVDDADSIFNIKKLLKCGVDIAKWKDHNPNDARP 420 Query: 422 FGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVFER 481 FG+REVW GYDP+ + D A ++VAPP + EK+RVL ++ W GLS+++QA++I ++FE+ Sbjct: 421 FGAREVWGGYDPAHSGDGASFVIVAPPALLKEKYRVLARYQWNGLSYKYQAAQIKQLFEK 480 Query: 482 FNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNRLQFDAG 541 +N+TY+GID TG+G GV++ + R+ V + Y+ E+K +V+K+ D+++ ++++D Sbjct: 481 YNMTYIGIDATGVGYGVYEQVKEFAGRKAVPLVYNPESKTEMVLKVHDLVEHEQIEWDEN 540 Query: 542 MKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLDHSTQRKST- 600 ++ +F+ IK +T SGN MTF AER+ + HAD F+A+++A+ N+ L +RKS Sbjct: 541 ERDIVPSFLMIKHTSTKSGNTMTFVAERTVKTQHADVFFAIANAINNKSLTDKPRRKSRG 600 Query: 601 WQM 603 W++ Sbjct: 601 WRL 603 >gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: predicted DNA-dependent ATPase terminase subunit # Family: family:all:169 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490600;genbank:gi:17313220;genbank:GeneID :927317 Length = 594 Score = 489 bits (1258), Expect = e-140, Method: Compositional matrix adjust. Identities = 271/596 (45%), Positives = 354/596 (59%), Gaps = 40/596 (6%) Query: 8 RQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTLLE 67 R+ A+ LY W +IAD L D+ ++ W D+ GW + I A+ R+ L+ Sbjct: 20 RRQAKFLYWMGWRVCDIADHLG-EKDKTLHSWKDRDGWDRADSVERIGGALEARLVQLIL 78 Query: 68 VENPSK---PQLDMLDRLINHHVKLKKLR--ATEQPTQPNEAGTVSAQSGAHNSKSGSPK 122 + + ++D+L R + ++++ + TE P A ++ P Sbjct: 79 KDGKTGGDYKEIDLLHRQLERQARIQRYQGGGTETDLNPELA-----------KRNEGP- 126 Query: 123 AESGTQTGDSGKQSAPSGKRKKVKNDVS-EITEADFKLWHDSLFAYQHTMRNNLHQRTRN 181 KRK +ND+S E+TE + + D F YQ +QRTR Sbjct: 127 ------------------KRKPKRNDISEELTEKLVEAFLDGCFDYQKDWYRAGNQRTRV 168 Query: 182 ILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITGN 241 ILKSRQIGAT+YFA EAL A+ TG NQIFLSAS+AQA +F+ YI A A++ +G+E+ G+ Sbjct: 169 ILKSRQIGATFYFAREALIDALETGRNQIFLSASKAQAHIFKAYIQAFARDAVGVELKGD 228 Query: 242 PSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYFS 301 P L NGAELH+L TN +TAQ YHG+ Y DE+FW KF ELNKVAS MA K++R+TYFS Sbjct: 229 PIILPNGAELHFLGTNARTAQGYHGNFYFDEFFWTFKFKELNKVASGMAMQKRYRRTYFS 288 Query: 302 TPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAKG 361 TPSS H AY+FWTGE++ K I+ + GRLC D+ WR +VTI DA Sbjct: 289 TPSSMAHEAYTFWTGERFNKGKPAADRIKIDVSHDALQQGRLCEDRIWRQIVTILDAEAR 348 Query: 362 GCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDS-DIW-QDYKPNAA 419 GCDLFDI+ELR EY F NL MC FVD +SIF ++ CMVDS D+W +DYKP A Sbjct: 349 GCDLFDIDELRLEYDAEAFQNLLMCQFVDDGASIFPLTMLQPCMVDSWDLWSEDYKPFAL 408 Query: 420 RPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVF 479 RPFG R+VWLGYDP+ T D A L+VVAPP V KFRVLE+H +RG F QA I KV Sbjct: 409 RPFGDRQVWLGYDPAETGDTAGLVVVAPPAVPGGKFRVLERHQFRGKDFAEQAEFIRKVT 468 Query: 480 ERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNRLQFD 539 +R+ VTY+G+D TG+G+GV L+ P YS E K +LVMK +I RL+FD Sbjct: 469 QRYWVTYIGVDTTGMGSGVAQLVRQFFP-GVRTFSYSPEVKTQLVMKAWSVIKNGRLEFD 527 Query: 540 AGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLDHST 595 AG + A A MAI++ T G T+ A R++ GHAD WAL HAL NEPL+ T Sbjct: 528 AGWTDLAQALMAIRKTITAGGRQFTYTAGRNDNTGHADLAWALFHALQNEPLEGQT 583 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 488 bits (1257), Expect = e-140, Method: Compositional matrix adjust. Identities = 268/598 (44%), Positives = 360/598 (60%), Gaps = 48/598 (8%) Query: 6 EIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTL 65 ++R+ AR LY + W IA L++ + W + W+D + I+ ++ R+ L Sbjct: 25 DVRKVARTLYWQGWRIASIARHLDIKPA-TVASWCRREKWKDATPVERIEASLEVRLMVL 83 Query: 66 LEVENPSKP---QLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGSPK 122 + E ++D+L R + +++K T + + N PK Sbjct: 84 IAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLN------------------PK 125 Query: 123 AESGTQTGDSGKQSAPSGKRKKVKNDVSE-----ITEADFKLWHDSLFAYQHTMRNNLHQ 177 S + + P KR+ +N++S+ I EA + DSLF YQ N Q Sbjct: 126 IAS--------RNAGP--KRRAPRNEISDEQHKRIIEA----FRDSLFDYQKVWYRNGDQ 171 Query: 178 RTRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIE 237 RTRNILKSRQIGAT+YFA EAL A+ T NQIFLSAS+AQA VF++YI A+ IE Sbjct: 172 RTRNILKSRQIGATWYFAREALVDALDTDRNQIFLSASKAQAHVFKQYITQFARAAADIE 231 Query: 238 ITGNPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRK 297 +TG+P L +GA L++L TN +TAQSYHG+ Y DEYFW+ KF ELNKVAS MA HK+WRK Sbjct: 232 LTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRK 291 Query: 298 TYFSTPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIED 357 TYFSTPSS H AY+FW+G + + I+ T E G LC D QWR +VT+ D Sbjct: 292 TYFSTPSSVTHEAYAFWSGAHANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLD 351 Query: 358 AAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQ----D 413 A GGCDLFDI+ELR EYS +F NL MC F+D + S+F+ + ++RCMVDS W+ D Sbjct: 352 AMAGGCDLFDIDELRREYSAEEFANLLMCQFIDDSLSVFKLSDLQRCMVDS--WEEWADD 409 Query: 414 YKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQAS 473 + P RPFG REVW+GYDP+ T D+A L+VVAPP V FRVLE+H +RG F+ QA+ Sbjct: 410 FSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAA 469 Query: 474 EISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDG 533 I + +R+NV Y+ ID TG+G GV+ L+ P VA++YS E K RLV+K ++ Sbjct: 470 AIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFP-AAVALNYSPEVKTRLVLKGQSVVRN 528 Query: 534 NRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591 RLQFDAG + A AFMAIK+ T SG T+ A R+++ GHAD WA HA+ EPL Sbjct: 529 GRLQFDAGWTDLAAAFMAIKQTMTASGRQATYTAGRTDETGHADLAWACLHAIDREPL 586 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 488 bits (1256), Expect = e-140, Method: Compositional matrix adjust. Identities = 268/598 (44%), Positives = 360/598 (60%), Gaps = 48/598 (8%) Query: 6 EIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTL 65 ++R+ AR LY + W IA L++ + W + W+D + I+ ++ R+ L Sbjct: 25 DVRKVARTLYWQGWRIASIARHLDIKPA-TVASWCRREKWKDATPVERIEASLEVRMMVL 83 Query: 66 LEVENPSKP---QLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGSPK 122 + E ++D+L R + +++K T + + N PK Sbjct: 84 IAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLN------------------PK 125 Query: 123 AESGTQTGDSGKQSAPSGKRKKVKNDVSE-----ITEADFKLWHDSLFAYQHTMRNNLHQ 177 S + + P KR+ +N++S+ I EA + DSLF YQ N Q Sbjct: 126 IAS--------RNAGP--KRRAPRNEISDEQHKRIIEA----FRDSLFDYQKVWYRNGDQ 171 Query: 178 RTRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIE 237 RTRNILKSRQIGAT+YFA EAL A+ T NQIFLSAS+AQA VF++YI A+ IE Sbjct: 172 RTRNILKSRQIGATWYFAREALVDALDTDRNQIFLSASKAQAHVFKQYITQFARGAADIE 231 Query: 238 ITGNPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRK 297 +TG+P L +GA L++L TN +TAQSYHG+ Y DEYFW+ KF ELNKVAS MA HK+WRK Sbjct: 232 LTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRK 291 Query: 298 TYFSTPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIED 357 TYFSTPSS H AY+FW+G + + I+ T E G LC D QWR +VT+ D Sbjct: 292 TYFSTPSSVTHEAYAFWSGAHANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLD 351 Query: 358 AAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQ----D 413 A GGCDLFDI+ELR EYS +F NL MC F+D + S+F+ + ++RCMVDS W+ D Sbjct: 352 AMAGGCDLFDIDELRREYSAEEFANLLMCQFIDDSLSVFKLSDLQRCMVDS--WEEWADD 409 Query: 414 YKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQAS 473 + P RPFG REVW+GYDP+ T D+A L+VVAPP V FRVLE+H +RG F+ QA+ Sbjct: 410 FSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAA 469 Query: 474 EISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDG 533 I + +R+NV Y+ ID TG+G GV+ L+ P VA++YS E K RLV+K ++ Sbjct: 470 AIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFP-AAVALNYSPEVKTRLVLKGQSVVRN 528 Query: 534 NRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591 RLQFDAG + A AFMAIK+ T SG T+ A R+++ GHAD WA HA+ EPL Sbjct: 529 GRLQFDAGWTDLAAAFMAIKQTMTASGRQATYTAGRTDETGHADLAWACLHAIDREPL 586 >gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111035;genbank:gi:134288784;genbank:Ge neID:4960696 Length = 589 Score = 485 bits (1249), Expect = e-139, Method: Compositional matrix adjust. Identities = 266/598 (44%), Positives = 361/598 (60%), Gaps = 48/598 (8%) Query: 6 EIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTL 65 ++R+ AR LY + W IA L++ + W + W+D + I+ ++ R+ L Sbjct: 13 DVRKVARTLYWQGWRIASIARHLDIKP-ATVASWCRREKWKDATPVERIEASLEVRMMVL 71 Query: 66 LEVENPSKP---QLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGSPK 122 + E ++D+L R + +++K T + + N PK Sbjct: 72 IAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLN------------------PK 113 Query: 123 AESGTQTGDSGKQSAPSGKRKKVKNDVSE-----ITEADFKLWHDSLFAYQHTMRNNLHQ 177 S + + P KR+ +N++S+ I EA + DSLF YQ N Q Sbjct: 114 IAS--------RNAGP--KRRAPRNEISDEQHKRIIEA----FRDSLFDYQKVWYRNGDQ 159 Query: 178 RTRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIE 237 RTRNILKSRQIGAT+YFA EAL A+ T NQIFLSAS+AQA VF++YI A++ +E Sbjct: 160 RTRNILKSRQIGATWYFAREALVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVE 219 Query: 238 ITGNPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRK 297 +TG+P L +GA L++L TN +TAQSYHG+ Y DEYFW+ KF ELNKVAS MA HK+WRK Sbjct: 220 LTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRK 279 Query: 298 TYFSTPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIED 357 TYFSTPSS H A++FW+G + + I+ T E G LC D QWR +VT+ D Sbjct: 280 TYFSTPSSVTHEAFAFWSGAHANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLD 339 Query: 358 AAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQ----D 413 A GGC+LFDI+ELR EYS +F NL MC F+D + S+F+ + ++RCMVDS W+ D Sbjct: 340 AMAGGCNLFDIDELRREYSAEEFANLLMCHFIDDSLSVFKLSDLQRCMVDS--WEEWADD 397 Query: 414 YKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQAS 473 + P RPFG REVW+GYDP+ T D+A L+VVAPP V FRVLE+H +RG F+ QA+ Sbjct: 398 FSPLLLRPFGHREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAA 457 Query: 474 EISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDG 533 I + +R+NV Y+ ID TG+G GV+ L+ P VA++YS E K RLV+K ++ Sbjct: 458 AIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFP-AAVALNYSPEVKTRLVLKGQSVVRN 516 Query: 534 NRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591 RLQFDAG + A AFMAIK+ T SG T+ A R+E+ GHAD WA HA+ EPL Sbjct: 517 GRLQFDAGWTDLAAAFMAIKQTMTASGRQATYTAGRTEETGHADLAWACLHAIDREPL 574 >gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165255;genbank:gi:145708080;genbank:Ge neID:5247139 Length = 593 Score = 464 bits (1195), Expect = e-133, Method: Compositional matrix adjust. Identities = 260/604 (43%), Positives = 363/604 (60%), Gaps = 39/604 (6%) Query: 1 MAYSPE--IRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAI 58 +++ PE R+ A LY + + IA+ L + ++ W + GW + + +I Sbjct: 10 LSFDPEKDPRRIAGTLYWQGYWVARIAEMLGVKP-VTVHSWKRRDGWDAADAVERVANSI 68 Query: 59 ANRIQTLL--EV-ENPSKPQLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHN 115 R+ L+ EV E ++D+L R + ++++ A+ T N Sbjct: 69 EERMAQLVAKEVKEGRDYKEIDLLGRQMERMARVRRYEASGNETDLN------------- 115 Query: 116 SKSGSPKAESGTQTGDSGKQSAPSGKRKKVKNDVSEITEADFKLWHDSLFAYQHT-MRNN 174 PK + + P K ++ E T+ + + DS+F YQ Sbjct: 116 -----PKV--------ANRNKGPRSKPERNAISPEEQTQL-LEAFRDSMFDYQRVWYEAG 161 Query: 175 LHQRTRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFL 234 +R RN+LKSRQIGAT+YFA EA A+ TG NQIFLSAS+AQA VF++YI+ AK+ Sbjct: 162 QVERIRNLLKSRQIGATWYFAREAFIDALTTGRNQIFLSASKAQAHVFKQYIIQFAKDAA 221 Query: 235 GIEITGNPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKK 294 GIE+ G+P L NGA L++L TN +TAQSYHG++Y DEYFW+ +F EL KVAS MA HK Sbjct: 222 GIELKGDPMVLPNGATLYFLGTNARTAQSYHGNLYFDEYFWVPRFQELRKVASGMAIHKH 281 Query: 295 WRKTYFSTPSSKMHPAYSFWTGEKWRGDKTTRKNIEFP-TFDELRDGGRLCPDKQWRYVV 353 WR+TYFSTPSS H AY FW+G + K K I+ + LRDG R C D QWR +V Sbjct: 282 WRQTYFSTPSSLSHEAYPFWSGALFNRGKAKDKQIKLDLSHAALRDGMR-CADGQWRQIV 340 Query: 354 TIEDAAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDS-DIWQ 412 T+EDA +GGC+LFD+++LR EYSE DF NL MCVF+D +S+F + R MVDS ++W+ Sbjct: 341 TVEDALRGGCNLFDLDQLRLEYSELDFANLLMCVFIDDNASVFPLAMLMRGMVDSWEVWE 400 Query: 413 DYKPNAARPFGSREVWLGYDPS-RTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQ 471 D++P A RPFG+R VW+GYDP+ D+A L+VVAPP+V KFRVLE+H +RG+ ++ Q Sbjct: 401 DFRPFAPRPFGNRPVWVGYDPNGGGGDSAALVVVAPPLVPGGKFRVLERHQFRGIDYEEQ 460 Query: 472 ASEISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDII 531 A I +V ER++V Y+GID TGIG V L+ P + YS + K LV+K D+I Sbjct: 461 AGAIRRVAERYDVAYVGIDRTGIGDAVFRLVQKFRP-DAEGFTYSVDVKTALVLKAHDVI 519 Query: 532 DGNRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591 RL+FDAG + A +FM+IK+ T +G +T++A RSE HAD WA HAL +EPL Sbjct: 520 SKGRLEFDAGWTDFAASFMSIKKTTTAAGGRVTYQAGRSEDTSHADLAWACMHALSHEPL 579 Query: 592 DHST 595 + T Sbjct: 580 EGVT 583 >gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839851;genbank:gi:30065706;genbank:GeneID :1260600 Length = 590 Score = 453 bits (1166), Expect = e-129, Method: Compositional matrix adjust. Identities = 256/596 (42%), Positives = 352/596 (59%), Gaps = 47/596 (7%) Query: 8 RQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTLLE 67 R+ A LY + ++ +IA L + + W + GW + ++ ++ R+ L Sbjct: 14 RRQAALLYWQGFSVPQIAAMLQMKRP-TVQSWKQRDGWDSVAPISRVEMSLEARLTQL-- 70 Query: 68 VENPSKP-----QLDMLDRLINHHVKLKKLRAT--EQPTQPNEAGTVSAQSGAHNSKSGS 120 + P K ++D+L R I ++ + T E PN A N G Sbjct: 71 IIKPQKTGGDFKEIDLLGRQIERLARVNRYSQTGNEADLNPNVA----------NRNKG- 119 Query: 121 PKAESGTQTGDSGKQSAPSGKRKKVKNDVS-EITEADFKLWHDSLFAYQ-HTMRNNLHQR 178 G+RK KN S E E +++ + F YQ H R L R Sbjct: 120 -------------------GRRKPKKNFFSDEAIEKLEQIFFEQSFEYQLHWYRAGLEHR 160 Query: 179 TRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEI 238 R+ILKSRQIGAT+YF+ EAL +A+ TG NQIFLSAS+ QA VFR YI+A A+ + +++ Sbjct: 161 IRDILKSRQIGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIAFAR-LVDVDL 219 Query: 239 TGNPSTL-SNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRK 297 TG+P L +NGA+L +L TN TAQS++G +Y+DE FWI F L KVAS MA+ R Sbjct: 220 TGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRS 279 Query: 298 TYFSTPSSKMHPAYSFWTGEKW-RGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIE 356 TYFSTPS+ H AY FW+GE + RG + + +E GG LC D QWR +VTIE Sbjct: 280 TYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQIVTIE 339 Query: 357 DAAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDS-DIWQDYK 415 DA KGGC LFDIE+L+ E S DF NLFMC FVD +S+F F +++RCMVD+ + W+DY Sbjct: 340 DALKGGCTLFDIEQLKRENSADDFKNLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYA 399 Query: 416 PNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEI 475 P AA PFGSR VW+GYDPS D+A +V+APP+VA KFR+LE+H W+G+ F QA I Sbjct: 400 PFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESI 459 Query: 476 SKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNR 535 K+ E++NV Y+GID TG+G GV L+ + +P I Y+ E K +V+K D+I Sbjct: 460 RKLTEKYNVEYIGIDATGLGVGVFQLVRSFYP-AARDIRYTPEMKTAMVLKAKDVIRRGC 518 Query: 536 LQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591 L++D + +FMAI++ T+SG T++A RSE+A HAD WA HAL+NEPL Sbjct: 519 LEYDVSATDITSSFMAIRKTMTSSGRSATYEASRSEEASHADLAWATMHALLNEPL 574 >gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878200;genbank:gi:33438899;genbank:GeneID :1457734 Length = 590 Score = 453 bits (1166), Expect = e-129, Method: Compositional matrix adjust. Identities = 256/596 (42%), Positives = 352/596 (59%), Gaps = 47/596 (7%) Query: 8 RQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTLLE 67 R+ A LY + ++ +IA L + + W + GW + ++ ++ R+ L Sbjct: 14 RRQAALLYWQGFSVPQIAAMLQMKRP-TVQSWKQRDGWDSVAPISRVEMSLEARLTQL-- 70 Query: 68 VENPSKP-----QLDMLDRLINHHVKLKKLRAT--EQPTQPNEAGTVSAQSGAHNSKSGS 120 + P K ++D+L R I ++ + T E PN A N G Sbjct: 71 IIKPQKTGGDFKEIDLLGRQIERLARVNRYSQTGNEADLNPNVA----------NRNKG- 119 Query: 121 PKAESGTQTGDSGKQSAPSGKRKKVKNDVS-EITEADFKLWHDSLFAYQ-HTMRNNLHQR 178 G+RK KN S E E +++ + F YQ H R L R Sbjct: 120 -------------------GRRKPKKNFFSDEAIEKLEQIFFEQSFEYQLHWYRAGLEHR 160 Query: 179 TRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEI 238 R+ILKSRQIGAT+YF+ EAL +A+ TG NQIFLSAS+ QA VFR YI+A A+ + +++ Sbjct: 161 IRDILKSRQIGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIAFAR-LVDVDL 219 Query: 239 TGNPSTL-SNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRK 297 TG+P L +NGA+L +L TN TAQS++G +Y+DE FWI F L KVAS MA+ R Sbjct: 220 TGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRS 279 Query: 298 TYFSTPSSKMHPAYSFWTGEKW-RGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIE 356 TYFSTPS+ H AY FW+GE + RG + + +E GG LC D QWR +VTIE Sbjct: 280 TYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQIVTIE 339 Query: 357 DAAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDS-DIWQDYK 415 DA KGGC LFDIE+L+ E S DF NLFMC FVD +S+F F +++RCMVD+ + W+DY Sbjct: 340 DALKGGCTLFDIEQLKRENSADDFKNLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYA 399 Query: 416 PNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEI 475 P AA PFGSR VW+GYDPS D+A +V+APP+VA KFR+LE+H W+G+ F QA I Sbjct: 400 PFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESI 459 Query: 476 SKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNR 535 K+ E++NV Y+GID TG+G GV L+ + +P I Y+ E K +V+K D+I Sbjct: 460 RKLTEKYNVEYIGIDATGLGVGVFQLVRSFYP-AARDIRYTPEMKTAMVLKAKDVIRRGC 518 Query: 536 LQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591 L++D + +FMAI++ T+SG T++A RSE+A HAD WA HAL+NEPL Sbjct: 519 LEYDVSATDITSSFMAIRKTMTSSGRSATYEASRSEEASHADLAWATMHALLNEPL 574 >gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046758;genbank:gi:9630329;genbank:GeneID: 1261531 Length = 590 Score = 452 bits (1164), Expect = e-129, Method: Compositional matrix adjust. Identities = 256/596 (42%), Positives = 352/596 (59%), Gaps = 47/596 (7%) Query: 8 RQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTLLE 67 R+ A LY + ++ +IA L + + W + GW + ++ ++ R+ L Sbjct: 14 RRQAALLYWQGFSVPQIAAMLQMKRP-TVQSWKQRDGWDSVAPISRVEMSLEARLTQL-- 70 Query: 68 VENPSKP-----QLDMLDRLINHHVKLKKLRAT--EQPTQPNEAGTVSAQSGAHNSKSGS 120 + P K ++D+L R I ++ + T E PN A N G Sbjct: 71 IIKPQKTGGDFKEIDLLGRQIERLARVNRYSQTGNEADLNPNVA----------NRNKG- 119 Query: 121 PKAESGTQTGDSGKQSAPSGKRKKVKNDVS-EITEADFKLWHDSLFAYQ-HTMRNNLHQR 178 G+RK KN S E E +++ + F YQ H R L R Sbjct: 120 -------------------GRRKPKKNFFSDEAIEKLEQIFFEQSFDYQLHWYRAGLEHR 160 Query: 179 TRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEI 238 R+ILKSRQIGAT+YF+ EAL +A+ TG NQIFLSAS+ QA VFR YI+A A+ + +++ Sbjct: 161 IRDILKSRQIGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIAFAR-LVDVDL 219 Query: 239 TGNPSTL-SNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRK 297 TG+P L +NGA+L +L TN TAQS++G +Y+DE FWI F L KVAS MA+ R Sbjct: 220 TGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRS 279 Query: 298 TYFSTPSSKMHPAYSFWTGEKW-RGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIE 356 TYFSTPS+ H AY FW+GE + RG + + +E GG LC D QWR +VTIE Sbjct: 280 TYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQIVTIE 339 Query: 357 DAAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDS-DIWQDYK 415 DA KGGC LFDIE+L+ E S DF NLFMC FVD +S+F F +++RCMVD+ + W+DY Sbjct: 340 DALKGGCTLFDIEQLKRENSADDFKNLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYA 399 Query: 416 PNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEI 475 P AA PFGSR VW+GYDPS D+A +V+APP+VA KFR+LE+H W+G+ F QA I Sbjct: 400 PFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESI 459 Query: 476 SKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNR 535 K+ E++NV Y+GID TG+G GV L+ + +P I Y+ E K +V+K D+I Sbjct: 460 RKLTEKYNVEYIGIDATGLGVGVFQLVRSFYP-AARDIRYTPEMKTAMVLKAKDVIRRGC 518 Query: 536 LQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591 L++D + +FMAI++ T+SG T++A RSE+A HAD WA HAL+NEPL Sbjct: 519 LEYDVSATDITSSFMAIRKTMTSSGRSATYEASRSEEASHADLAWATMHALLNEPL 574 >gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3 # Family: family:all:169 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958058;genbank:gi:41057355;genbank:GeneID :2744226 Length = 589 Score = 441 bits (1134), Expect = e-125, Method: Compositional matrix adjust. Identities = 247/599 (41%), Positives = 352/599 (58%), Gaps = 53/599 (8%) Query: 8 RQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTLLE 67 R+ A LY + ++ +IA+ L + + W + GW + ++ ++ R+ L+ Sbjct: 14 RRQASLLYWQGFSVPQIAEMLQVKRP-TVQSWKQRDGWDGIAPISRVESSLEARLIQLI- 71 Query: 68 VENPSKPQ--------LDMLDRLINHHVKLKKLRAT--EQPTQPNEAGTVSAQSGAHNSK 117 +KPQ +D+L R I ++ + T E PN A N Sbjct: 72 ----AKPQKSGGDFKEIDLLGRQIERLARVNRYSQTGNEADLNPNVA----------NRN 117 Query: 118 SGSPKAESGTQTGDSGKQSAPSGKRKKVKNDVSEITEADFK-LWHDSLFAYQ-HTMRNNL 175 G +++ KN S+ A + ++ D F YQ R L Sbjct: 118 KGE--------------------RKRPKKNFFSDEAVAKLEEIFFDQSFEYQLQWYRAGL 157 Query: 176 HQRTRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLG 235 R R+ILKSRQIGAT+YF+ EAL +A+ TG NQIFLSAS+ QA VFR YI+ A+ + Sbjct: 158 AHRIRDILKSRQIGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIQFAR-LVD 216 Query: 236 IEITGNPSTL-SNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKK 294 +++TG+P + +NGA+L +L TN TAQS++G +Y+DE FWI F +L KVAS MA+ K Sbjct: 217 VDLTGDPIVIGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQKH 276 Query: 295 WRKTYFSTPSSKMHPAYSFWTGEKW-RGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVV 353 R TYFSTPS+ H AY FW+GE + +G + IE GG LC D QWR +V Sbjct: 277 LRSTYFSTPSTLAHGAYPFWSGELFNKGRASAADRIEIDISHSALAGGLLCADGQWRQIV 336 Query: 354 TIEDAAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDS-DIWQ 412 TIEDA GGC LFD+++LR E S+ DF NLFMC FVD +S+F F +++RCMVD + W+ Sbjct: 337 TIEDALAGGCTLFDLDQLRRENSDEDFKNLFMCEFVDDKASVFPFEELQRCMVDVMETWE 396 Query: 413 DYKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQA 472 D+ P A PFGSR VW+GYDPS T D+A +V+APP+V+ KFR+LE+H W+G+ F QA Sbjct: 397 DFAPFADHPFGSRPVWIGYDPSHTGDSAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQA 456 Query: 473 SEISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIID 532 I ++ E++NV Y+GID TG+G GV L+ + +P I Y+ E K +V+K D I Sbjct: 457 EGIRRLTEKYNVEYIGIDATGLGLGVFQLVRSFYP-AARGIRYTPEMKTAMVLKAKDTIR 515 Query: 533 GNRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591 L++DAG + +FM+I++ T+SG T++A R+E+A HAD WA HAL+NEPL Sbjct: 516 RGCLEYDAGATDVTQSFMSIRKTMTSSGRSATYEASRTEEASHADIAWATMHALLNEPL 574 >gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655470;genbank:gi:109289938;genbank:GeneI D:4157372 Length = 605 Score = 432 bits (1111), Expect = e-123, Method: Compositional matrix adjust. Identities = 240/595 (40%), Positives = 349/595 (58%), Gaps = 40/595 (6%) Query: 8 RQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTLLE 67 ++ A++ Y +T EI+ +LN+ I W + W ++ ++ + +R+ L+ Sbjct: 26 KREAQSKYWAGYTVTEISRQLNIPVSTIAS-WKKREKWDEISPVGRVEATLESRLNLLIM 84 Query: 68 VE---NPSKPQLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGSPKAE 124 E N ++D L RL+ ++KK +G N +P + Sbjct: 85 KESKNNNDYKEMDALRRLLESTARIKKY-----------------SNGGGNEADLNPNIK 127 Query: 125 SGTQTGDSGKQSAPSGKRKKVKNDVSEITEADFKL--WHDSLFAYQHTMRN-NLHQRTRN 181 + + G RKK + + +A+ + + D +F YQ L R RN Sbjct: 128 NRNK-----------GDRKKPEQNAISEEQAELLINGFLDGMFHYQKKWHEAGLTHRIRN 176 Query: 182 ILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITGN 241 ILKSRQIGATYYFA EAL A++TG NQIF+SAS+ QA FR YIVA AK +E+ G Sbjct: 177 ILKSRQIGATYYFAHEALVDALVTGRNQIFISASKKQALQFRAYIVAYAKRVADVELKGE 236 Query: 242 PSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYFS 301 TL N ++L +L TN KTAQSYHG++Y DE FW+ +F+E+ KVA+ MA+ K++R TYFS Sbjct: 237 TITLPNESQLIFLGTNSKTAQSYHGNLYFDEIFWVNRFEEIRKVAAGMASQKQYRITYFS 296 Query: 302 TPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAKG 361 TPSS H AY W+G+ + + + +E G+ C D QWR +V I DA G Sbjct: 297 TPSSITHSAYLLWSGKLFNRKRPKAEQVEIDISHANLKNGKKCGDGQWRQIVNIYDAEAG 356 Query: 362 GCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDS-DIWQDY--KPNA 418 GC+LFDIE+L+ E S +F LFMC F+D S+F+F ++RC+VDS ++W+DY Sbjct: 357 GCNLFDIEQLKLENSPDEFEQLFMCEFIDDNQSVFKFTMMQRCLVDSMEVWRDYVFTDGY 416 Query: 419 ARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKV 478 RPFG++EVW+GYDPS T D + L+V+APP V KFR+LE T++G F QA+EI + Sbjct: 417 QRPFGNKEVWVGYDPSYTGDRSALVVIAPPKVDGGKFRLLEYRTFKGADFAEQAAEIVAI 476 Query: 479 FERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNRLQF 538 ++NVT L ID TG+G GV++++ + P + VA+ Y+ E K+++V+K +DII R +F Sbjct: 477 CAKYNVTRLAIDTTGLGVGVYEIVKKERP-DAVALTYNVELKSKMVLKGLDIISKGRFEF 535 Query: 539 DAGMK-ETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLD 592 D+ E +FMAIK+ TNSG +T+ A+RSE+A HAD WA INEP D Sbjct: 536 DSMHAVEVGASFMAIKKQITNSGRQVTYVADRSEEASHADLAWACLQVFINEPFD 590 >gi|13742|lcl|protein:vir:1826 Length: 248 # NCBI annotation: W protein # Family: family:all:169 # MgeID: mge:324 # MgeName: 186 # Cross-refs: genbank:acc:NP_052250;genbank:gi:9634057;genbank:GeneID: 1262463 Length = 248 Score = 117 bits (294), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 131/248 (52%), Gaps = 19/248 (7%) Query: 145 VKNDV---SEITEADFKLWHDSLFAYQHT-MRNNLHQRTRNILKSRQIGATYYFAGEALE 200 +KN+V S+I +A + H+ F YQ T +R R+I KSRQIGAT F+ EAL Sbjct: 1 MKNNVFSQSQI-QAMADILHNDSFDYQATWLRVGKLNIDRSITKSRQIGATQLFSREALL 59 Query: 201 QAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITGNPSTLS--NGAELHYLSTNG 258 A+ TGDN ++ + + A V Y+ ++ +G+ +T N +L +GA + ++ Sbjct: 60 DALTTGDNHVWFAHTIEHARVALMYMSNLSAR-VGVSLTSNGHSLQLDDGAVISFVGEES 118 Query: 259 KTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYFSTPSSKMHPAYSFWTGEK 318 A + G+VY+DE+ W KVA+ +A HK+ T F++PS + A+ W G Sbjct: 119 HCA-ALAGNVYLDEFGWFNNPLRAAKVAAGIACHKRHSLTMFTSPSDN-YDAFRVWNG-- 174 Query: 319 WRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAKGGCDLFDIEELREEYSET 378 TTR++ P + C D WR VT++ A + GC+LF +E++ EYS+ Sbjct: 175 -----TTRRHRPSPLINT--GDSVFCTDGVWRQSVTLDAACQRGCNLFAPDEIKHEYSDD 227 Query: 379 DFNNLFMC 386 D+ LF C Sbjct: 228 DYRLLFGC 235 >gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: large terminase subunit # Family: family:all:460 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164067;genbank:gi:56692599;genbank:GeneID :3192575 Length = 486 Score = 52.4 bits (124), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 103/463 (22%), Positives = 183/463 (39%), Gaps = 87/463 (18%) Query: 178 RTRNILKSRQIG---ATYYFAGEA-------LEQAILTGDN---QIFLSASRAQADVFRR 224 R + + KSRQIG +T Y AGE ++Q + + D+ ++FL + A + + Sbjct: 31 RLKLMQKSRQIGLSWSTAYAAGERTAAESARVDQWVSSRDDLQARLFLEDCKMWAGIMNQ 90 Query: 225 YIVAIAKEFLGIE--ITGNPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDEL 282 + + + ++ I+ +NG +H +S+N G +DE+ Sbjct: 91 AAKDLGEIVIDVKNKISAYVLEFANGRRIHSMSSNPDAQAGKRGGRILDEF--------- 141 Query: 283 NKVASAMATHKKWRKTYFSTPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGR 342 A H RK + S +P ++ + +N E+ +GG Sbjct: 142 -------ALHPDPRKLW-----SIAYPGITWGGAMEIISTHRGSQNFFNQLVREIVEGGN 189 Query: 343 LCPDKQWRYVVTIEDAAKGGCDLFDIEEL-----------REEY---------SETDFNN 382 P + VT++DA G LF ++++ +Y E F Sbjct: 190 --PKNISLHTVTLQDALNQGF-LFKLQQMLPADDEIQGMDEAQYFDFIRAGCADEESFQQ 246 Query: 383 LFMCVFVDGASSIFEFNKIERCMVDSDI-WQDYKPNAARPFGSREVWLGYDPSRTRDNAV 441 +MC D + E++ I WQ +P R F G D R +D V Sbjct: 247 EYMCNPADDDVAFLEYDLIASAEYPQTANWQ--QPEGGRLFA------GVDIGRKKDLTV 298 Query: 442 LMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASE--ISKVFERFNVTYLGIDITGIGAGVH 499 L I+ + + +H R + + A E + F+R + ID TG+G G Sbjct: 299 LW-----ILELLGDVLYTRHVERLQNMRKSAQEAILWPWFQR--CERICIDATGLGIGWA 351 Query: 500 DLLVNKHPRETV-AIHYSNENKNRLVMKMIDIIDGNRLQFDAGMKETAMAFMAIKRVATN 558 D ++ V A+ ++ K L + ++ ++++ K A A + + T Sbjct: 352 DDAQDQFGEHRVEAVTFTPRVKEALAYPIRGAMEDHKVRIPYDPKIRA-ALREVTKQTTA 410 Query: 559 SGNMMTFKAERSEQAGHADDFWALSHA------LINEPLDHST 595 +GN+ F AER+ GHAD+FWAL A L++ P+D+ + Sbjct: 411 AGNI-RFTAERTAD-GHADEFWALGLAIHAASGLVDMPIDYQS 451 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 21/106 (19%) Query: 409 DIWQDYKPNAARP--------------FGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEK 454 ++WQ+ K NA P FG R+V++G+D S+T D+ L V P + K Sbjct: 344 NLWQNAKKNAYLPLDLVQDAIVDEFDYFG-RDVFIGFDYSQTNDDTSLAFVFPH--SGSK 400 Query: 455 FRVLEKHTWRGLSFQHQASEISKVFERFNVTYLGIDITGIGAGVHD 500 F L +H+W ++ +A I +R N+ Y + G D Sbjct: 401 FH-LYQHSWIPIA---KAGSIEAKEQRDNIDYRAVQEKGFATITRD 442 >gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164303;genbank:gi:56692921;genbank:GeneID :3197204 Length = 543 Score = 33.5 bits (75), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Query: 182 ILKSRQIGATYYFAGEALEQAILTGDNQI-FLSASRAQADVFRRYIVAIAKEFLGIEITG 240 ILK+RQ+G T A L+ A+ GD + ++ R A V R V A + L EI Sbjct: 83 ILKARQLGFTTLIAIMWLDHALFNGDQRCGIIAQDRDAAKVIFRDKVKFAYDNLPEEIRE 142 Query: 241 N-PSTLSNGAELHYLSTN 257 P+ +N EL + N Sbjct: 143 RFPTAAANADELLFAHNN 160 >gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unknown # Family: family:all:4926 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046608;genbank:gi:9630181;genbank:GeneID: 1261423 Length = 589 Score = 32.3 bits (72), Expect = 0.017, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 21/33 (63%) Query: 471 QASEISKVFERFNVTYLGIDITGIGAGVHDLLV 503 QA+ I +++E ++ Y+ +D IG GV+D L Sbjct: 393 QATRIRQIYEDYDCDYIVLDTQSIGLGVYDALC 425 >gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: similar to terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835653;genbank:gi:30044056 Length = 508 Score = 30.4 bits (67), Expect = 0.062, Method: Compositional matrix adjust. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 6/76 (7%) Query: 141 KRKKVKNDVSEITEADFKLWHDSLFAYQHTMRNNLHQRTRNILKSRQIGATYYFAGEALE 200 K K+++ + + D + L + HT R + + K RQ+G T+ AL Sbjct: 24 KYVKIQHPIKRVIPFDLYPIQEKLINFYHTHRYVITE------KPRQMGVTWCAVAYALH 77 Query: 201 QAILTGDNQIFLSASR 216 Q I + ++ ++A++ Sbjct: 78 QMIFNSNYKVLIAANK 93 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 30.0 bits (66), Expect = 0.090, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 16/116 (13%) Query: 425 REVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVFERFNV 484 R+V++G+D S+T DN + P + +++H++ + QA I ++ + Sbjct: 395 RDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPFA---QAKTIEAKSKQDGL 451 Query: 485 TYLG------IDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGN 534 YL +DIT + +GV +N + Y N+ +RL +K I I D N Sbjct: 452 DYLKLQDEGFVDITNLASGV----INTEQVYQWLVDYVNQ--HRLKVKFI-IADPN 500 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 29.3 bits (64), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 16/116 (13%) Query: 425 REVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVFERFNV 484 R+V++G+D S+T DN + P + +++H++ + QA I ++ + Sbjct: 396 RDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPFA---QAKTIEAKSKQDGL 452 Query: 485 TYLG------IDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGN 534 YL +DIT + +GV +N + Y N+ +RL +K I I D N Sbjct: 453 DYLKLQDEGFVDITNLASGV----INTDQVYQWLVDYVNQ--HRLKVKFI-IADPN 501 >gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: Pas60 # Family: family:all:144 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024846;genbank:gi:48697461;genbank:GeneID :2846165 Length = 492 Score = 26.9 bits (58), Expect = 0.66, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 21/158 (13%) Query: 349 WRYVVTIEDA-AKGGCDLFDIEELREEYSETD--FNNLFMCVF-VDGASSIFEFNKIERC 404 W VT+E+A A G ++ R ++ F+N + F S+ +E Sbjct: 220 WTRHVTLEEAIASGRISRAWADQRRSQWGSDSAVFHNRVLGEFHASDEDSVIPLAWLEAA 279 Query: 405 MVDSDIWQDYKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWR 464 + + W ++ RP +W G D R D VL V +E R + Sbjct: 280 I---ERWHEWD-RQGRPSPGGPLWTGVDVGRGGDETVLAARDGWAVTLETNRRRDTMATV 335 Query: 465 GLSFQHQASEISKVFERFNVTYLGIDITGIGAGVHDLL 502 GL + I ID+ G+GAGV D L Sbjct: 336 GLIQAREGRAI-------------IDVIGLGAGVFDRL 360 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 10/64 (15%) Query: 375 YSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQDYKPNAARPFGSREVWLGYDPS 434 +S+ +F + + VFV+GA + FE ++++ +V +LG D S Sbjct: 324 HSKAEFLSKHLNVFVNGADNYFEHDQVQHVLVKD----------LGDLTGEICYLGLDLS 373 Query: 435 RTRD 438 +T D Sbjct: 374 KTTD 377 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 430 GYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTW 463 GYD R + M + P+ E F VL K+T+ Sbjct: 440 GYDLQRIVSDNFRMEILKPLFEREGFEVLSKNTF 473 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 430 GYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTW 463 GYD R + M + P+ E F VL K+T+ Sbjct: 440 GYDLQRIVSDNFRMEILKPLFEREGFEVLSKNTF 473 >gi|108|lcl|protein:vir:1985 Length: 551 # NCBI annotation: putative portal protein # Family: family:all:460 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050632;genbank:gi:9633519;genbank:GeneID: 2636303 Length = 551 Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 22/44 (50%) Query: 246 SNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAM 289 ++G ++ LS+ + G V IDE + DEL K A A+ Sbjct: 148 NSGFKIQALSSRPSNLRGLQGDVVIDEAAFHEALDELLKAAFAL 191 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 24.6 bits (52), Expect = 3.1, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 8/128 (6%) Query: 364 DLFDIEELREEYSETDFNNLFMCVFVDGASSIFE-FNKIERCMVDSDIWQDYKPNAARPF 422 DL DIEE R S+ F + F IF+ FN I+ + +K + A Sbjct: 222 DLNDIEEARRTVSKNYFRQEYEADFSVFEGQIFDTFNAIDHVKDLKGMRHFFKDDEA--- 278 Query: 423 GSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVFERF 482 E LG D AVL + + + VLE++ + A+ I +R+ Sbjct: 279 --FETLLGIDVGYRDPTAVLTIKYH--YDTDTYYVLEEYQQAEKTTAQHAAYIQHCIDRY 334 Query: 483 NVTYLGID 490 V + +D Sbjct: 335 KVDRIFVD 342 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 24.3 bits (51), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Query: 426 EVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVFERFNVT 485 EV++G+D S DN L V P KF + E+H++ + FQ QA I ++ +T Sbjct: 387 EVFIGFDYSMFSDNTALSFVYP--YDDGKFHI-EQHSF--IPFQ-QAGSIEAKEKQDGIT 440 Query: 486 Y 486 Y Sbjct: 441 Y 441 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 23.9 bits (50), Expect = 5.6, Method: Compositional matrix adjust. Identities = 13/45 (28%), Positives = 20/45 (44%) Query: 147 NDVSEITEADFKLWHDSLFAYQHTMRNNLHQRTRNILKSRQIGAT 191 ND+ ITE DF + D Y+ + + + IL + I T Sbjct: 36 NDIERITEDDFPYYFDGEELYRFYRWARMFKHNKGILAGQPIELT 80 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 23.9 bits (50), Expect = 6.6, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 12/103 (11%) Query: 402 ERCMVDSDIW---QDYKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVL 458 E +D W Q KP+ + R VWLG D R D + ++ ++ + L Sbjct: 348 EESYIDKQSWELAQIDKPDTYK----RRVWLGVDVGRVSD----LFAISSVIMMDDYWYL 399 Query: 459 EKHTWRGLSFQHQASEISKVFERFNVTYLG-IDITGIGAGVHD 500 + ++ + A E N+ G +IT + +GV D Sbjct: 400 DSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVID 442 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.132 0.397 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 280,288 Number of Sequences: 514 Number of extensions: 12934 Number of successful extensions: 109 Number of sequences better than 100.0: 34 Number of HSP's better than 100.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 36 length of query: 605 length of database: 206,069 effective HSP length: 77 effective length of query: 528 effective length of database: 166,491 effective search space: 87907248 effective search space used: 87907248 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)