Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RR1-B | Genbank acc : NC_021557

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 52

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	30	lcl\|NC_021557.1_cdsid_YP_008129844.1	HHsearch (proba=100.00%)
Portal	25	lcl\|NC_021557.1_cdsid_YP_008129839.1	HHsearch (proba=100.00%)
TermL	24	lcl\|NC_021557.1_cdsid_YP_008129838.1	Blast (e-value=1e-150)
MTP	36	lcl\|NC_021557.1_cdsid_YP_008129850.1	Blast (e-value=4e-16)
Sheath	35	lcl\|NC_021557.1_cdsid_YP_008129849.1	HHsearch (proba=100.00%)
Ad1	32	lcl\|NC_021557.1_cdsid_YP_008129846.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	27	lcl\|NC_021557.1_cdsid_YP_008129841.1	HHsearch (proba=100.00%)
Tc1	33	lcl\|NC_021557.1_cdsid_YP_008129847.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	5	4
Ne1<->Tc1	6	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79078 protein:vir:107882 protein:vir:99888	phiE255 BcepMu B3	34 % 33 % 21 %
Portal	protein:vir:99853 protein:vir:107880 protein:vir:79063	B3 BcepMu phiE255	28 % 25 % 24 %
TermL	protein:vir:99234 protein:vir:103868 protein:vir:79222	DMS3 D3112 Phage MP22	48 % 48 % 34 %
MTP	protein:vir:79072 protein:vir:107863 protein:vir:79203	phiE255 BcepMu phiE202	29 % 29 % 20 %
Sheath	protein:vir:79092 protein:vir:107865 protein:vir:10336	phiE255 BcepMu VHML	38 % 38 % 29 %
Ad1	protein:vir:99848 protein:vir:79074 protein:vir:1993	B3 phiE255 Mu	23 % 18 % 18 %
Ne1	protein:vir:99196 protein:vir:79225 protein:vir:103841	DMS3 Phage MP22 D3112	36 % 35 % 34 %
Tc1	protein:vir:79065 protein:vir:107857 protein:vir:1994	phiE255 BcepMu Mu	24 % 24 % 17 %