Virfam_CNT_anal:NC_020870

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiLN04 | Genbank acc : NC_020870

Category to which the Query Phage was assigned :

The queried phage could not be assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 39

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	13	lcl\|NC_020870.1_cdsid_YP_007676642.1	HHsearch (proba=100.00%)
Portal	12	lcl\|NC_020870.1_cdsid_YP_007676641.1	HHsearch (proba=100.00%)
TermL	11	lcl\|NC_020870.1_cdsid_YP_007676640.1	Blast (e-value=1e-44)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93616 protein:vir:96762 protein:vir:4074	phi 4795 VP882 c2	20 % 16 % 16 %
Portal	protein:vir:9641 protein:vir:98643 protein:vir:94869	315.1 phi3396 P008	21 % 20 % 18 %
TermL	protein:vir:78630 protein:vir:96981 protein:vir:94427	tp310-2 42e 47	24 % 24 % 24 %