Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : pCB2047-C | Genbank acc : NC_020856

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 71

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	71	lcl\|NC_020856.1_cdsid_YP_007675329.1	HHsearch (proba=100.00%)
Portal	68	lcl\|NC_020856.1_cdsid_YP_007675326.1	HHsearch (proba=100.00%)
TermL	67	lcl\|NC_020856.1_cdsid_YP_007675325.1	Blast (e-value=1e-62)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	5	lcl\|NC_020856.1_cdsid_YP_007675263.1	HHsearch (proba=100.00%)
Hc3	7	lcl\|NC_020856.1_cdsid_YP_007675265.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:8843 protein:vir:96442 protein:vir:103370	PaP3 119X PaP2	33 % 18 % 18 %
Portal	protein:vir:8846 protein:vir:95821 protein:vir:108295	PaP3 N4 BA3	25 % 15 % 14 %
TermL	protein:vir:105417 protein:vir:171 protein:vir:3519	Sf6 HK620 APSE-1	27 % 27 % 23 %
Ad3	protein:vir:8841 protein:vir:3302 protein:vir:2779	PaP3 933W Stx2 converting bacteriophage I	27 % 13 % 13 %
Hc3	protein:vir:352 protein:vir:8837 protein:vir:108312	Mx8 PaP3 BA3	26 % 13 % 17 %