Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Mx8 | Genbank acc : NC_003085 | Aclame index mge :9

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 85

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	48	lcl\|Aclame:protein:vir:348\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	45	lcl\|Aclame:protein:vir:345\|NCBI_annot:virion	HHsearch (proba=100.00%)
TermL	44	lcl\|Aclame:protein:vir:344\|NCBI_annot:terminase\|genbank:acc:NP_203458;genbank:gi:15320614;genbank:Ge	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	51	lcl\|Aclame:protein:vir:351\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc3	52	lcl\|Aclame:protein:vir:352\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:348 protein:vir:8843 protein:vir:96442	Mx8 PaP3 119X	100 % 11 % 11 %
Portal	protein:vir:345 protein:vir:80165 protein:vir:3520	Mx8 Pf-WMP3 APSE-1	100 % 15 % 15 %
TermL	protein:vir:344 protein:vir:103777 protein:vir:102661	Mx8 BcepC6B VP2	100 % 29 % 21 %
Ad3	protein:vir:351 protein:vir:8841 protein:vir:103760	Mx8 PaP3 BcepC6B	100 % 9 % 16 %
Hc3	protein:vir:352 protein:vir:8837 protein:vir:108312	Mx8 PaP3 BA3	100 % 12 % 14 %