Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PaP2 | Genbank acc : NC_005884 | Aclame index mge :1621

Category to which the Query Phage was assigned :

The phage most likely belong to the Podoviridae class
However, some subunits are missing to confidently assign it to one of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 58

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	13	lcl\|Aclame:protein:vir:103370\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	8	lcl\|Aclame:protein:vir:103385\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	7	lcl\|Aclame:protein:vir:103374\|NCBI_annot:putative	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	21	lcl\|Aclame:protein:vir:103364\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103370 protein:vir:96442 protein:vir:8843	PaP2 119X PaP3	92 % 92 % 13 %
Portal	protein:vir:103385 protein:vir:96403 protein:vir:8846	PaP2 119X PaP3	100 % 100 % 15 %
TermL	protein:vir:103374 protein:vir:96410 protein:vir:99234	PaP2 119X DMS3	100 % 99 % 18 %
Hc3	protein:vir:103364 protein:vir:96439 protein:vir:8837	PaP2 119X PaP3	100 % 99 % 17 %