Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiMAM1 | Genbank acc : NC_020083

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 198

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	61	lcl\|NC_020083.1_cdsid_YP_007349040.1	HHsearch (proba=100.00%)
Portal	56	lcl\|NC_020083.1_cdsid_YP_007349035.1	HHsearch (proba=100.00%)
TermL	51	lcl\|NC_020083.1_cdsid_YP_007349030.1	Blast (e-value=5e-85)
MTP	55	lcl\|NC_020083.1_cdsid_YP_007349034.1	Blast (e-value=4e-15)
Sheath	52	lcl\|NC_020083.1_cdsid_YP_007349031.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	47	lcl\|NC_020083.1_cdsid_YP_007349026.1	HHsearch (proba=100.00%)
Hc2	48	lcl\|NC_020083.1_cdsid_YP_007349027.1	HHsearch (proba=100.00%)
Tc2	49	lcl\|NC_020083.1_cdsid_YP_007349028.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104915 protein:vir:103181 protein:vir:104549	P-SSM2 Syn9 P-SSM4	41 % 39 % 38 %
Portal	protein:vir:104500 protein:vir:103177 protein:vir:106999	P-SSM4 Syn9 S-PM2	36 % 35 % 35 %
TermL	protein:vir:104536 protein:vir:7202 protein:vir:103169	P-SSM4 T4 Syn9	35 % 34 % 34 %
MTP	protein:vir:103176 protein:vir:104504 protein:vir:106918	Syn9 P-SSM4 S-PM2	27 % 27 % 26 %
Sheath	protein:vir:104477 protein:vir:80984 protein:vir:6594	P-SSM4 Phi1 RB49	30 % 29 % 28 %
Ad2	protein:vir:104694 protein:vir:106985 protein:vir:103004	P-SSM2 S-PM2 Syn9	35 % 32 % 29 %
Hc2	protein:vir:106986 protein:vir:103005 protein:vir:5658	S-PM2 Syn9 KVP40	30 % 28 % 28 %
Tc2	protein:vir:104695 protein:vir:7200 protein:vir:98260	P-SSM2 T4 RB43	22 % 22 % 22 %