BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_020083.1_cdsid_YP_007349034.1 [gene=G646_gp055] [protein=tail tube protein] [protein_id=YP_007349034.1] [location=55680..56213] (177 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|24014|lcl|protein:vir:104771 Length: 195 # NCBI annotation: T... 72 4e-15 gi|22265|lcl|protein:vir:104504 Length: 196 # NCBI annotation: g... 65 5e-13 gi|20246|lcl|protein:vir:106918 Length: 204 # NCBI annotation: t... 60 1e-11 gi|23415|lcl|protein:vir:103176 Length: 202 # NCBI annotation: g... 57 1e-10 gi|27125|lcl|protein:vir:6595 Length: 164 # NCBI annotation: tai... 50 2e-08 gi|25350|lcl|protein:vir:80985 Length: 164 # NCBI annotation: gp... 50 2e-08 gi|28184|lcl|protein:vir:108048 Length: 163 # NCBI annotation: g... 50 2e-08 gi|24598|lcl|protein:vir:98264 Length: 161 # NCBI annotation: gp... 50 2e-08 gi|22058|lcl|protein:vir:103457 Length: 163 # NCBI annotation: t... 50 2e-08 gi|27412|lcl|protein:vir:7207 Length: 163 # NCBI annotation: gp1... 49 3e-08 gi|26945|lcl|protein:vir:5664 Length: 166 # NCBI annotation: gp1... 48 5e-08 gi|27703|lcl|protein:vir:6895 Length: 163 # NCBI annotation: gp1... 44 1e-06 gi|20806|lcl|protein:vir:106171 Length: 162 # NCBI annotation: g... 44 1e-06 gi|21079|lcl|protein:vir:100597 Length: 163 # NCBI annotation: g... 42 5e-06 gi|22944|lcl|protein:vir:101805 Length: 162 # NCBI annotation: g... 40 1e-05 gi|23193|lcl|protein:vir:101188 Length: 162 # NCBI annotation: t... 40 1e-05 gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp1... 23 2.4 gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: pu... 21 7.9 >gi|24014|lcl|protein:vir:104771 Length: 195 # NCBI annotation: T4-like tail tube protein # Family: family:all:1107 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214362;genbank:gi:61806002;genbank:GeneID :3294291 Length = 195 Score = 72.0 bits (175), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 6/176 (3%) Query: 1 MATVNEFRGAMSRGGGVQRQHRWRVTISFPSFAASADQTRDVC-LLAVTTNTPTGQLGEI 59 + T++ F+ ++ GG R + + V ++FP A D L N P + +I Sbjct: 11 LRTISNFKSKLTGGGA--RANLFEVVLTFPDVAQPDSAVLDKARFLVKGANLPASNVAQI 68 Query: 60 LVPWGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYINGSESNRASANPDEYFR 119 VP+ GR L GDR F++ +T IN + ++ E W IN N NP +Y Sbjct: 69 EVPFRGRVLKIAGDRTFDSWTVTVINDTDFAIRSAFERWSNTINRLSDNTGLTNPADYQS 128 Query: 120 DVVLELLDANDNVTKTWTLQGAWPQNLGQLELDMSAMDSYTQFTCDL--RYFQAVS 173 D + LD + + +++ +P +G +EL A +FT +L +Y++A+ Sbjct: 129 DAYVYQLDRDGSTLRSYRFYDTFPTQVGPIELSYDAQ-GIQEFTVELQVQYWEAIK 183 >gi|22265|lcl|protein:vir:104504 Length: 196 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214664;genbank:gi:61806305;genbank:GeneID :3294559 Length = 196 Score = 65.1 bits (157), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 22/182 (12%) Query: 3 TVNEFRGAMSRGGGVQRQHRWRVTISFPSFAASADQTRDVCLLAVTT----NTPTGQLGE 58 T+++F+ + R + ++V ++FPS Q D+ L T N P+ Q+G Sbjct: 6 TIDQFKANVK--SDFARPNLFQVDLAFPS---EILQDSDLVNLGKFTVRAANLPSSQIGV 60 Query: 59 ILVPWGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYINGSESNRASA-----N 113 I VP+ GR L GDR FE IT +N ++ME+W I N SA N Sbjct: 61 IEVPFRGRVLKIAGDRTFEPWTITIMNDSQFKLRSAMELWASSIQAYNENFTSAGSLGDN 120 Query: 114 PDE--YFRDVVLELL--DAND----NVTKTWTLQGAWPQNLGQLELDMSAMDSYTQFTCD 165 D YF D+ + L D D + K++ +P N+ ++LD D+ +FT + Sbjct: 121 SDSSGYFADMTVHQLARDLKDGESPKILKSYKFYNIFPSNIAAIDLDYGNNDAVEEFTVE 180 Query: 166 LR 167 ++ Sbjct: 181 MQ 182 >gi|20246|lcl|protein:vir:106918 Length: 204 # NCBI annotation: tail tube protein gp19 # Family: family:all:1107 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195137;genbank:gi:58532914;goa:Q5GQN5;uni prot:Q5GQN5;genbank:GeneID:3260390 Length = 204 Score = 60.5 bits (145), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 10/164 (6%) Query: 14 GGGVQRQHRWRVTISFPSFAASADQTRD-VCLLAVTTNTPTGQLGEILVPWGGRELPFPG 72 G GV + + + V I FP+ A D + LL + P LG I VP+ GR + G Sbjct: 13 GQGV-KPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAG 71 Query: 73 DRRFEALPITFINVVNNGPYNSMEVWQQYINGSESNRA---SANPDE-YFRDVVLELLDA 128 DR F+ TF+N E W + IN E+N A + + D Y R++ ++ L+ Sbjct: 72 DRTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARNLKVKQLEK 131 Query: 129 NDN----VTKTWTLQGAWPQNLGQLELDMSAMDSYTQFTCDLRY 168 N + V + + L +P N+ Q+++ + D +FT + +Y Sbjct: 132 NGSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQY 175 >gi|23415|lcl|protein:vir:103176 Length: 202 # NCBI annotation: gp130 # Family: family:all:1107 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717797;genbank:gi:113200634;genbank:GeneI D:4239185 Length = 202 Score = 57.0 bits (136), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 16/178 (8%) Query: 4 VNEFRGAMSRGGGVQRQHRWRVTISFPSFAASADQTRDVCLLAV-TTNTPTGQLGEILVP 62 ++ F+ + + R + + V ++FP A + V N P+ Q+G + VP Sbjct: 8 IDRFKAKVKKD--FARPNLFEVELNFPGAIAKGAGAARLGAFTVRAANLPSSQIGVVEVP 65 Query: 63 WGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYINGSESNRASA----NPDE-- 116 + GR L GDR FE IT +N + E W Q I N +A N D+ Sbjct: 66 FRGRVLKIAGDRTFEPWTITVMNDSSFRLRKIFEKWAQKIQAYNENFTAAGTLGNADDSA 125 Query: 117 -YFRDVVLELL--DANDNVT----KTWTLQGAWPQNLGQLELDMSAMDSYTQFTCDLR 167 YF D+ + L D D +++ +P N+ ++LD + D+ +FT +L+ Sbjct: 126 GYFADMYVHQLSRDIRDGRKPQPLRSYKFIDVFPSNISSIDLDFGSNDAIEEFTVELQ 183 >gi|27125|lcl|protein:vir:6595 Length: 164 # NCBI annotation: tail tube protein # Family: family:all:1107 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891726;genbank:gi:33620609;genbank:GeneID :1725319 Length = 164 Score = 50.1 bits (118), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 51/109 (46%) Query: 44 LLAVTTNTPTGQLGEILVPWGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYIN 103 L+ P + +I + + R++ GDR ++ IT N + +++ W + Sbjct: 36 LMCKAATVPAATVEKIAIGYQNRKINIAGDRVYDDWTITVFNDDAHKIRDAIVAWSDQTH 95 Query: 104 GSESNRASANPDEYFRDVVLELLDANDNVTKTWTLQGAWPQNLGQLELD 152 G+ S A P +Y + ++ L+ N T TL G +P N+G++ LD Sbjct: 96 GTGSAITGATPAQYKKQAIVRQLNRNTESTSEKTLYGIFPTNVGEVTLD 144 >gi|25350|lcl|protein:vir:80985 Length: 164 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469500;genbank:gi:157311457;genbank:Ge neID:5602118 Length = 164 Score = 50.1 bits (118), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 51/109 (46%) Query: 44 LLAVTTNTPTGQLGEILVPWGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYIN 103 L+ P + +I + + R++ GDR ++ IT N + +++ W + Sbjct: 36 LMCKAATVPAATVEKIAIGYQNRKINIAGDRVYDDWTITVFNDDAHKIRDAIVAWSDQTH 95 Query: 104 GSESNRASANPDEYFRDVVLELLDANDNVTKTWTLQGAWPQNLGQLELD 152 G+ S A P +Y + ++ L+ N T TL G +P N+G++ LD Sbjct: 96 GTGSAITGATPAQYKKQAIVRQLNRNTESTSEKTLYGIFPTNVGEVTLD 144 >gi|28184|lcl|protein:vir:108048 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595295;genbank:gi:161622601;genbank:Ge neID:5783767 Length = 163 Score = 50.1 bits (118), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 1/112 (0%) Query: 52 PTGQLGEILVPWGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYINGSESNRAS 111 P G + ++ V + R++ GDR F+ IT N + ++ WQ +G + Sbjct: 42 PAGIVEKVPVGYMNRKINVAGDRTFDDWTITIYNDDAHDTRQAIVDWQNLCHGMTNEITG 101 Query: 112 ANPDEYFRDVVLELLDAN-DNVTKTWTLQGAWPQNLGQLELDMSAMDSYTQF 162 A P EY + V+ + VTK T+ G WP N+G++++D + + F Sbjct: 102 AAPAEYKKQAVVRQFHRDGKTVTKEVTIYGLWPTNVGEVQMDWDSNNEVETF 153 >gi|24598|lcl|protein:vir:98264 Length: 161 # NCBI annotation: gp19 tail tube monomer # Family: family:all:1107 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239197;genbank:gi:66391672;genbank:GeneID :3416366 Length = 161 Score = 49.7 bits (117), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 25/113 (22%), Positives = 53/113 (46%) Query: 52 PTGQLGEILVPWGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYINGSESNRAS 111 P + ++ V + R++ GDR ++ IT N + +++ W ++G + Sbjct: 41 PAATVEKVPVGYQNRKINVAGDRTYDDWTITIYNDDAHNTRDALVAWSNMMHGMGDQISG 100 Query: 112 ANPDEYFRDVVLELLDANDNVTKTWTLQGAWPQNLGQLELDMSAMDSYTQFTC 164 P Y + ++ + ND +T T+ G +P N+G++ LD + + + F C Sbjct: 101 DIPANYKKTATVKQKNRNDEITAEHTIHGLFPTNVGEVTLDWDSNNEISTFEC 153 >gi|22058|lcl|protein:vir:103457 Length: 163 # NCBI annotation: tail tube monomer # Family: family:all:1107 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803109;genbank:gi:116326389;genbank:GeneI D:4405486 Length = 163 Score = 49.7 bits (117), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 49 TNTPTGQLGEILVPWGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYINGSESN 108 T P G + +I V + R++ GDR F+ IT +N + WQ G + Sbjct: 39 TALPAGIVEKIPVGFMNRKINVAGDRTFDDWTITVMNDEAHDARQKFVDWQSIAAGQGNE 98 Query: 109 RASANPDEYFRD-VVLELLDANDNVTKTWTLQGAWPQNLGQLELDMSAMDSYTQFTCDL 166 P EY + +V + VTK ++G WP N+G+L+LD + + F L Sbjct: 99 ITGGKPAEYKKSAIVRQYARDAKTVTKEVEIKGLWPTNVGELQLDWDSNNEIQTFEVTL 157 >gi|27412|lcl|protein:vir:7207 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049781;genbank:gi:9632593;genbank:GeneID: 1258727 Length = 163 Score = 49.3 bits (116), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 49 TNTPTGQLGEILVPWGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYINGSESN 108 T P G + +I V + R++ GDR F+ +T +N + WQ G + Sbjct: 39 TALPAGIVEKIPVGFMNRKINVAGDRTFDDWTVTVMNDEAHDARQKFVDWQSIAAGQGNE 98 Query: 109 RASANPDEYFRD-VVLELLDANDNVTKTWTLQGAWPQNLGQLELDMSAMDSYTQFTCDL 166 P EY + +V + VTK ++G WP N+G+L+LD + + F L Sbjct: 99 ITGGKPAEYKKSAIVRQYARDAKTVTKEIEIKGLWPTNVGELQLDWDSNNEIQTFEVTL 157 >gi|26945|lcl|protein:vir:5664 Length: 166 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899603;genbank:gi:34419590;genbank:GeneID :2545785 Length = 166 Score = 48.1 bits (113), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%) Query: 49 TNTPTGQLGEILVPWGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYINGSESN 108 ++ P G + ++ V + R+ GDR F+ +T N + ++ WQ G + Sbjct: 41 SSMPPGSVEKVEVSYQNRKYNIAGDRTFDDWNVTVYNDETHDIRKAIMAWQARAVGLGKD 100 Query: 109 RASANPDEYFRDVVLELLDANDNVTKTWTLQGAWPQNLGQLELDMSAMDSYTQF--TCDL 166 + PD+Y R + LD N + T + T+ G +P +G++ LD + + F T L Sbjct: 101 ISGETPDQYKRTGTITQLDRNGDPTTSATVYGIFPTVVGEVALDWDSNNEIETFEVTFSL 160 Query: 167 RYF 169 YF Sbjct: 161 DYF 163 >gi|27703|lcl|protein:vir:6895 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861871;genbank:gi:32453662;genbank:GeneID :1494297 Length = 163 Score = 44.3 bits (103), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 49 TNTPTGQLGEILVPWGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYINGSESN 108 T P + ++ V + R++ GDR F+ IT +N + WQ G + Sbjct: 39 TALPAAIVEKVPVSYMNRKINVAGDRTFDDWTITVMNDDAHSIRQKFVDWQGIAAGQGNE 98 Query: 109 RASANPDEYFRD-VVLELLDANDNVTKTWTLQGAWPQNLGQLELDMSAMDSYTQFTCDL 166 P EY + +V + VTK + G WP N+G++ LD + + F L Sbjct: 99 ITGGKPAEYKKSAIVRQFARDAKTVTKEVEIVGLWPTNVGEVSLDWDSNNEIETFEVTL 157 >gi|20806|lcl|protein:vir:106171 Length: 162 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944107;genbank:gi:38640151;genbank:GeneID :2657917 Length = 162 Score = 43.9 bits (102), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 37/86 (43%) Query: 66 RELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYINGSESNRASANPDEYFRDVVLEL 125 +++ GDR FE IT N + WQ + N P Y ++ + Sbjct: 56 KKMKLAGDRTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAPASYKKEATVRQ 115 Query: 126 LDANDNVTKTWTLQGAWPQNLGQLEL 151 LD T+ +T+ GAWP N+ ++ L Sbjct: 116 LDRKGKQTRQYTVYGAWPTNIAEIAL 141 >gi|21079|lcl|protein:vir:100597 Length: 163 # NCBI annotation: gp19 tail tube monomer # Family: family:all:1107 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656381;genbank:gi:109290132;genbank:GeneI D:4156575 Length = 163 Score = 41.6 bits (96), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Query: 52 PTGQLGEILVPWGGRELPFPGDRRFEALPITFINVVNNGPYN---SMEVWQQYINGSESN 108 P + +I V + R+L GDR F+ IT ++ P + W +G + Sbjct: 42 PAATVEKIPVGYMNRKLNVAGDRIFDDWTITI--YTDSAPITLDRQLSDWNAMTHGMGNE 99 Query: 109 RASANPDEYFRDVVLELLDANDNVTKTWTLQGAWPQNLGQLELDMSAMDSYTQF 162 P+ Y + ++ D N N TK +T+ G +P N+G++ LD ++ + F Sbjct: 100 ITGDIPEAYKKPGIVRQKDRNGNTTKEYTIVGLFPTNVGEVTLDWDDNNTVSTF 153 >gi|22944|lcl|protein:vir:101805 Length: 162 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238882;genbank:gi:66391957;genbank:GeneID :3416632 Length = 162 Score = 40.4 bits (93), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/111 (23%), Positives = 50/111 (45%) Query: 52 PTGQLGEILVPWGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYINGSESNRAS 111 P + +I V + R+L GDR ++ +T N + ++ W +G + Sbjct: 42 PAATVEKIPVGYMNRKLNIAGDRIYDDWTVTIYNDSAHITRQAIVDWNAMTHGMGNTITG 101 Query: 112 ANPDEYFRDVVLELLDANDNVTKTWTLQGAWPQNLGQLELDMSAMDSYTQF 162 P+ Y + V+ D N TK + + G +P N+G++ LD ++ + F Sbjct: 102 DIPEAYKKPGVVRQKDRNGESTKEYAIIGLFPTNVGEVTLDWDDNNTVSTF 152 >gi|23193|lcl|protein:vir:101188 Length: 162 # NCBI annotation: tail tube protein # Family: family:all:1107 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932510;genbank:gi:37651636;genbank:GeneID :2610681 Length = 162 Score = 40.4 bits (93), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/111 (23%), Positives = 50/111 (45%) Query: 52 PTGQLGEILVPWGGRELPFPGDRRFEALPITFINVVNNGPYNSMEVWQQYINGSESNRAS 111 P + +I V + R+L GDR ++ +T N + ++ W +G + Sbjct: 42 PAATVEKIPVGYMNRKLNIAGDRIYDDWTVTIYNDSAHITRQAIVDWNAMTHGMGNTITG 101 Query: 112 ANPDEYFRDVVLELLDANDNVTKTWTLQGAWPQNLGQLELDMSAMDSYTQF 162 P+ Y + V+ D N TK + + G +P N+G++ LD ++ + F Sbjct: 102 DIPEAYKKPGVVRQKDRNGESTKEYAIIGLFPTNVGEVTLDWDDNNTVSTF 152 >gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046828;genbank:gi:9630396;genbank:GeneID: 1261617 Length = 595 Score = 23.1 bits (48), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 9/53 (16%) Query: 83 FINVVNNGPYNSMEVWQQYINGSESNRASANPDEYFRDVVLEL--LDANDNVT 133 F+N VN +++ E NR A+PD+Y + EL LD +T Sbjct: 362 FLNQVNAAE-------DSWLSPQEWNRCFADPDKYLDKMGFELAPLDRGQKIT 407 >gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110720;genbank:gi:134287337;genbank:G eneID:4955190 Length = 417 Score = 21.2 bits (43), Expect = 7.9, Method: Compositional matrix adjust. Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 2 ATVNEFRGAMSRGGGVQRQHRWRVTIS 28 +T E GA++R G Q W+ T++ Sbjct: 71 STYAELTGAINRIYGKQADKYWKTTLN 97 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.133 0.414 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,642 Number of Sequences: 514 Number of extensions: 3661 Number of successful extensions: 25 Number of sequences better than 100.0: 18 Number of HSP's better than 100.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 18 length of query: 177 length of database: 206,069 effective HSP length: 66 effective length of query: 111 effective length of database: 172,145 effective search space: 19108095 effective search space used: 19108095 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 34 (17.7 bits)