Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 138 lcl|NC_019925.1_cdsid_YP_007237460.1 HHsearch (proba=100.00%)
Portal 143 lcl|NC_019925.1_cdsid_YP_007237465.1 HHsearch (proba=100.00%)
TermL 147 lcl|NC_019925.1_cdsid_YP_007237469.1 Blast (e-value=3e-80)
MTP 144 lcl|NC_019925.1_cdsid_YP_007237466.1 Blast (e-value=7e-17)
Sheath 146 lcl|NC_019925.1_cdsid_YP_007237468.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 154 lcl|NC_019925.1_cdsid_YP_007237476.1 HHsearch (proba=100.00%)
Hc2 151 lcl|NC_019925.1_cdsid_YP_007237473.1 HHsearch (proba=100.00%)
Tc2 150 lcl|NC_019925.1_cdsid_YP_007237472.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad2<->Hc2 3 2
Tc2<->Ad2 4 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104915
protein:vir:103181
protein:vir:104549
P-SSM2
Syn9
P-SSM4
41 %
39 %
39 %
Portal protein:vir:104500
protein:vir:103177
protein:vir:98265
P-SSM4
Syn9
RB43
37 %
35 %
34 %
TermL protein:vir:104536
protein:vir:103169
protein:vir:106989
P-SSM4
Syn9
S-PM2
34 %
33 %
33 %
MTP protein:vir:104771
protein:vir:103176
protein:vir:104504
P-SSM2
Syn9
P-SSM4
28 %
28 %
28 %
Sheath protein:vir:104477
protein:vir:80984
protein:vir:6594
P-SSM4
Phi1
RB49
31 %
30 %
29 %
Ad2 protein:vir:104694
protein:vir:103004
protein:vir:103451
P-SSM2
Syn9
RB32
33 %
28 %
28 %
Hc2 protein:vir:104739
protein:vir:106986
protein:vir:103005
P-SSM2
S-PM2
Syn9
32 %
32 %
30 %
Tc2 protein:vir:107931
protein:vir:104695
protein:vir:106402
JS98
P-SSM2
Aeh1
23 %
23 %
23 %