Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Limestone | Genbank acc : NC_019925

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 201

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	138	lcl\|NC_019925.1_cdsid_YP_007237460.1	HHsearch (proba=100.00%)
Portal	143	lcl\|NC_019925.1_cdsid_YP_007237465.1	HHsearch (proba=100.00%)
TermL	147	lcl\|NC_019925.1_cdsid_YP_007237469.1	Blast (e-value=3e-80)
MTP	144	lcl\|NC_019925.1_cdsid_YP_007237466.1	Blast (e-value=7e-17)
Sheath	146	lcl\|NC_019925.1_cdsid_YP_007237468.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	154	lcl\|NC_019925.1_cdsid_YP_007237476.1	HHsearch (proba=100.00%)
Hc2	151	lcl\|NC_019925.1_cdsid_YP_007237473.1	HHsearch (proba=100.00%)
Tc2	150	lcl\|NC_019925.1_cdsid_YP_007237472.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad2<->Hc2	3	2
Tc2<->Ad2	4	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104915 protein:vir:103181 protein:vir:104549	P-SSM2 Syn9 P-SSM4	41 % 39 % 39 %
Portal	protein:vir:104500 protein:vir:103177 protein:vir:98265	P-SSM4 Syn9 RB43	37 % 35 % 34 %
TermL	protein:vir:104536 protein:vir:103169 protein:vir:106989	P-SSM4 Syn9 S-PM2	34 % 33 % 33 %
MTP	protein:vir:104771 protein:vir:103176 protein:vir:104504	P-SSM2 Syn9 P-SSM4	28 % 28 % 28 %
Sheath	protein:vir:104477 protein:vir:80984 protein:vir:6594	P-SSM4 Phi1 RB49	31 % 30 % 29 %
Ad2	protein:vir:104694 protein:vir:103004 protein:vir:103451	P-SSM2 Syn9 RB32	33 % 28 % 28 %
Hc2	protein:vir:104739 protein:vir:106986 protein:vir:103005	P-SSM2 S-PM2 Syn9	32 % 32 % 30 %
Tc2	protein:vir:107931 protein:vir:104695 protein:vir:106402	JS98 P-SSM2 Aeh1	23 % 23 % 23 %