Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 21 lcl|NC_019910.1_cdsid_YP_007236116.1 HHsearch (proba=100.00%)
Portal 16 lcl|NC_019910.1_cdsid_YP_007236111.1 HHsearch (proba=100.00%)
TermL 12 lcl|NC_019910.1_cdsid_YP_007236107.1 Blast (e-value=2e-78)
MTP 15 lcl|NC_019910.1_cdsid_YP_007236110.1 Blast (e-value=6e-17)
Sheath 13 lcl|NC_019910.1_cdsid_YP_007236108.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 6 lcl|NC_019910.1_cdsid_YP_007236101.1 HHsearch (proba=100.00%)
Hc2 8 lcl|NC_019910.1_cdsid_YP_007236103.1 HHsearch (proba=100.00%)
Tc2 9 lcl|NC_019910.1_cdsid_YP_007236104.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104915
protein:vir:103181
protein:vir:104549
P-SSM2
Syn9
P-SSM4
42 %
39 %
39 %
Portal protein:vir:104500
protein:vir:103177
protein:vir:106282
P-SSM4
Syn9
Aeh1
35 %
34 %
33 %
TermL protein:vir:104536
protein:vir:103169
protein:vir:106989
P-SSM4
Syn9
S-PM2
33 %
33 %
33 %
MTP protein:vir:103176
protein:vir:104771
protein:vir:106918
Syn9
P-SSM2
S-PM2
30 %
28 %
28 %
Sheath protein:vir:80984
protein:vir:104477
protein:vir:6594
Phi1
P-SSM4
RB49
31 %
31 %
30 %
Ad2 protein:vir:104694
protein:vir:103004
protein:vir:100534
P-SSM2
Syn9
25
34 %
29 %
28 %
Hc2 protein:vir:104739
protein:vir:103005
protein:vir:106986
P-SSM2
Syn9
S-PM2
31 %
31 %
30 %
Tc2 protein:vir:107931
protein:vir:98260
protein:vir:104479
JS98
RB43
P-SSM4
24 %
23 %
22 %