Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi1422 | Genbank acc : NC_019525

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 76

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	50	lcl\|NC_019525.1_cdsid_YP_007007129.1	HHsearch (proba=100.00%)
Portal	45	lcl\|NC_019525.1_cdsid_YP_007007124.1	HHsearch (proba=100.00%)
TermL	44	lcl\|NC_019525.1_cdsid_YP_007007123.1	Blast (e-value=1e-79)
MTP	NOT FOUND
Sheath	55	lcl\|NC_019525.1_cdsid_YP_007007134.1	HHsearch (proba=100.00%)
Ad1	51	lcl\|NC_019525.1_cdsid_YP_007007130.1	HHsearch (proba=100.00%)
Hc1	53	lcl\|NC_019525.1_cdsid_YP_007007132.1	HHsearch (proba=97.93%)
Ne1	52	lcl\|NC_019525.1_cdsid_YP_007007131.1	HHsearch (proba=98.44%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5255 protein:vir:80068 protein:vir:104342	Aaphi23 B054 RTP	21 % 17 % 15 %
Portal	protein:vir:5249 protein:vir:79647 protein:vir:106716	Aaphi23 TLS Bcep1	20 % 19 % 18 %
TermL	protein:vir:105705 protein:vir:96782 protein:vir:96238	ES18 phiHSIC 69	41 % 37 % 28 %
Sheath	protein:vir:5260 protein:vir:3636 protein:vir:78611	Aaphi23 Bcep781 BcepNY3	22 % 17 % 16 %
Ad1	protein:vir:79640 protein:vir:96108 protein:vir:101559	TLS F8 Bcep43	22 % 22 % 21 %
Hc1	protein:vir:5258 protein:vir:80104	Aaphi23 B054	22 % 23 %
Ne1	protein:vir:96105 protein:vir:5257 protein:vir:101563	F8 Aaphi23 Bcep43	21 % 20 % 19 %