Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RE-2010 | Genbank acc : NC_019488

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 47

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	18	lcl\|NC_019488.1_cdsid_YP_007003511.1	HHsearch (proba=100.00%)
Portal	15	lcl\|NC_019488.1_cdsid_YP_007003508.1	HHsearch (proba=100.00%)
TermL	16	lcl\|NC_019488.1_cdsid_YP_007003509.1	Blast (e-value=0)
MTP	40	lcl\|NC_019488.1_cdsid_YP_007003533.1	Blast (e-value=1e-56)
Sheath	39	lcl\|NC_019488.1_cdsid_YP_007003532.1	HHsearch (proba=100.00%)
Ad1	20	lcl\|NC_019488.1_cdsid_YP_007003513.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	26	lcl\|NC_019488.1_cdsid_YP_007003519.1	HHsearch (proba=100.00%)
Tc1	25	lcl\|NC_019488.1_cdsid_YP_007003518.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Ad1	5	4
Ne1<->Ad1	6	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79157 protein:vir:98566 protein:vir:1829	RSA1 PSP3 186	61 % 60 % 60 %
Portal	protein:vir:79150 protein:vir:98567 protein:vir:2013	RSA1 PSP3 P2	66 % 62 % 62 %
TermL	protein:vir:79128 protein:vir:98555 protein:vir:2014	RSA1 PSP3 P2	66 % 63 % 63 %
MTP	protein:vir:98546 protein:vir:1846 protein:vir:1173	PSP3 186 phi CTX	59 % 59 % 52 %
Sheath	protein:vir:1845 protein:vir:6079 protein:vir:1172	186 WPhi phi CTX	69 % 68 % 68 %
Ad1	protein:vir:98558 protein:vir:79188 protein:vir:1831	PSP3 phiE202 186	43 % 42 % 42 %
Ne1	protein:vir:1164 protein:vir:79115 protein:vir:98557	phi CTX RSA1 PSP3	45 % 44 % 44 %
Tc1	protein:vir:1837 protein:vir:2025 protein:vir:5702	186 P2 L-413C	47 % 47 % 46 %