Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 18 lcl|NC_019488.1_cdsid_YP_007003511.1 HHsearch (proba=100.00%)
Portal 15 lcl|NC_019488.1_cdsid_YP_007003508.1 HHsearch (proba=100.00%)
TermL 16 lcl|NC_019488.1_cdsid_YP_007003509.1 Blast (e-value=0)
MTP 40 lcl|NC_019488.1_cdsid_YP_007003533.1 Blast (e-value=1e-56)
Sheath 39 lcl|NC_019488.1_cdsid_YP_007003532.1 HHsearch (proba=100.00%)
Ad1 20 lcl|NC_019488.1_cdsid_YP_007003513.1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 26 lcl|NC_019488.1_cdsid_YP_007003519.1 HHsearch (proba=100.00%)
Tc1 25 lcl|NC_019488.1_cdsid_YP_007003518.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Tc1<->Ad1 5 4
Ne1<->Ad1 6 4


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:79157
protein:vir:98566
protein:vir:1829
RSA1
PSP3
186
61 %
60 %
60 %
Portal protein:vir:79150
protein:vir:98567
protein:vir:2013
RSA1
PSP3
P2
66 %
62 %
62 %
TermL protein:vir:79128
protein:vir:98555
protein:vir:2014
RSA1
PSP3
P2
66 %
63 %
63 %
MTP protein:vir:98546
protein:vir:1846
protein:vir:1173
PSP3
186
phi CTX
59 %
59 %
52 %
Sheath protein:vir:1845
protein:vir:6079
protein:vir:1172
186
WPhi
phi CTX
69 %
68 %
68 %
Ad1 protein:vir:98558
protein:vir:79188
protein:vir:1831
PSP3
phiE202
186
43 %
42 %
42 %
Ne1 protein:vir:1164
protein:vir:79115
protein:vir:98557
phi CTX
RSA1
PSP3
45 %
44 %
44 %
Tc1 protein:vir:1837
protein:vir:2025
protein:vir:5702
186
P2
L-413C
47 %
47 %
46 %