Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SuMu | Genbank acc : NC_019455

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	32	lcl\|NC_019455.1_cdsid_YP_007002940.1	HHsearch (proba=100.00%)
Portal	27	lcl\|NC_019455.1_cdsid_YP_007002935.1	HHsearch (proba=100.00%)
TermL	26	lcl\|NC_019455.1_cdsid_YP_007002934.1	Blast (e-value=1e-173)
MTP	NOT FOUND
Sheath	38	lcl\|NC_019455.1_cdsid_YP_007002946.1	HHsearch (proba=100.00%)
Ad1	34	lcl\|NC_019455.1_cdsid_YP_007002942.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	30	lcl\|NC_019455.1_cdsid_YP_007002938.1	HHsearch (proba=100.00%)
Tc1	35	lcl\|NC_019455.1_cdsid_YP_007002943.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Tc1	5	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79246 protein:vir:99228 protein:vir:1991	Phage MP22 DMS3 Mu	47 % 47 % 46 %
Portal	protein:vir:103860 protein:vir:79233 protein:vir:99232	D3112 Phage MP22 DMS3	42 % 40 % 40 %
TermL	protein:vir:99234 protein:vir:103868 protein:vir:79222	DMS3 D3112 Phage MP22	55 % 54 % 32 %
Sheath	protein:vir:1996 protein:vir:4517 protein:vir:4463	Mu V ST64B	28 % 27 % 27 %
Ad1	protein:vir:79253 protein:vir:99222 protein:vir:1993	Phage MP22 DMS3 Mu	32 % 32 % 30 %
Ne1	protein:vir:107851 protein:vir:103841 protein:vir:99196	BcepMu D3112 DMS3	36 % 35 % 33 %
Tc1	protein:vir:1994 protein:vir:107857 protein:vir:79065	Mu BcepMu phiE255	14 % 21 % 20 %