Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Tb | Genbank acc : NC_019446

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 58

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	17	lcl\|NC_019446.1_cdsid_YP_007002025.1	HHsearch (proba=100.00%)
Portal	12	lcl\|NC_019446.1_cdsid_YP_007002020.1	HHsearch (proba=100.00%)
TermL	7	lcl\|NC_019446.1_cdsid_YP_007002015.1	Blast (e-value=6e-30)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	20	lcl\|NC_019446.1_cdsid_YP_007002028.1	HHsearch (proba=100.00%)
Hc3	21	lcl\|NC_019446.1_cdsid_YP_007002029.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:348 protein:vir:8843 protein:vir:96442	Mx8 PaP3 119X	30 % 15 % 14 %
Portal	protein:vir:345 protein:vir:105619 protein:vir:10117	Mx8 F116 Stx2 converting bacteriophage II	26 % 14 % 13 %
TermL	protein:vir:80218 protein:vir:95873 protein:vir:80169	LKA1 N4 Pf-WMP3	17 % 17 % 17 %
Ad3	protein:vir:351 protein:vir:8841 protein:vir:103760	Mx8 PaP3 BcepC6B	19 % 8 % 14 %
Hc3	protein:vir:352 protein:vir:8837 protein:vir:108312	Mx8 PaP3 BA3	23 % 12 % 13 %