Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : LKA1 | Genbank acc : NC_009936 | Aclame index mge :1879

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 56

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	43	lcl\|Aclame:protein:vir:80213\|NCBI_annot:capsid	HHsearch (proba=100.00%)
Portal	41	lcl\|Aclame:protein:vir:80211\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	51	lcl\|Aclame:protein:vir:80218\|NCBI_annot:putative	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	44	lcl\|Aclame:protein:vir:80215\|NCBI_annot:putative	HHsearch (proba=100.00%)
Hc3	45	lcl\|Aclame:protein:vir:80253\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80213 protein:vir:78935 protein:vir:6324	LKA1 LKD16 phiKMV	100 % 50 % 50 %
Portal	protein:vir:80211 protein:vir:6322 protein:vir:78942	LKA1 phiKMV LKD16	100 % 44 % 43 %
TermL	protein:vir:80218 protein:vir:6335 protein:vir:78939	LKA1 phiKMV LKD16	100 % 60 % 59 %
Ad3	protein:vir:80215 protein:vir:6325 protein:vir:78929	LKA1 phiKMV LKD16	100 % 40 % 39 %
Hc3	protein:vir:80253 protein:vir:78957 protein:vir:6326	LKA1 LKD16 phiKMV	100 % 40 % 38 %