Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : F116 | Genbank acc : NC_006552 | Aclame index mge :1540

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 70

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	43	lcl\|Aclame:protein:vir:105610\|NCBI_annot:virion	HHsearch (proba=100.00%)
Portal	40	lcl\|Aclame:protein:vir:105619\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	39	lcl\|Aclame:protein:vir:105593\|NCBI_annot:terminase	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	46	lcl\|Aclame:protein:vir:105573\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc3	52	lcl\|Aclame:protein:vir:105563\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad3<->Hc3	6	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105610 protein:vir:104439 protein:vir:10123	F116 86 Stx2 converting bacteriophage II	100 % 33 % 33 %
Portal	protein:vir:105619 protein:vir:10117 protein:vir:9950	F116 Stx2 converting bacteriophage II Stx1 converting bacteriophage	100 % 30 % 30 %
TermL	protein:vir:105593 protein:vir:93626 protein:vir:104436	F116 Bcep22 86	100 % 57 % 29 %
Ad3	protein:vir:105573 protein:vir:3302 protein:vir:2779	F116 933W Stx2 converting bacteriophage I	100 % 25 % 25 %
Hc3	protein:vir:105563 protein:vir:93631 protein:vir:5120	F116 Bcep22 PBC5	100 % 18 % 17 %