Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_CsaP_GAP52 | Genbank acc : NC_019402

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 115

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	10	lcl\|NC_019402.1_cdsid_YP_006987657.1	HHsearch (proba=100.00%)
Portal	6	lcl\|NC_019402.1_cdsid_YP_006987653.1	HHsearch (proba=100.00%)
TermL	5	lcl\|NC_019402.1_cdsid_YP_006987652.1	Blast (e-value=1e-97)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	15	lcl\|NC_019402.1_cdsid_YP_006987662.1	HHsearch (proba=100.00%)
Hc3	21	lcl\|NC_019402.1_cdsid_YP_006987668.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad3<->Hc3	6	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:8843 protein:vir:103370 protein:vir:96442	PaP3 PaP2 119X	28 % 12 % 11 %
Portal	protein:vir:8846 protein:vir:93630 protein:vir:95821	PaP3 Bcep22 N4	25 % 16 % 15 %
TermL	protein:vir:8847 protein:vir:9262 protein:vir:77595	PaP3 ST64T P22	39 % 35 % 35 %
Ad3	protein:vir:8841 protein:vir:351 protein:vir:105573	PaP3 Mx8 F116	20 % 12 % 11 %
Hc3	protein:vir:8837 protein:vir:2625 protein:vir:9268	PaP3 SIO1 ST64T	29 % 16 % 13 %