Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP NOT FOUND
Portal 4 lcl|Aclame:protein:vir:2599|NCBI_annot:gp5|genbank:acc:NP_064741;genbank:gi:9964612;genbank:GeneID:1 HHsearch (proba=100.00%)
TermL 5 lcl|Aclame:protein:vir:2600|NCBI_annot:gp4|genbank:acc:NP_064742;genbank:gi:9964611;genbank:GeneID:1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 31 lcl|Aclame:protein:vir:2626|NCBI_annot:gp28|genbank:acc:NP_064767;genbank:gi:9964637;genbank:GeneID: HHsearch (proba=100.00%)
Hc3 30 lcl|Aclame:protein:vir:2625|NCBI_annot:gp27|genbank:acc:NP_064766;genbank:gi:9964636;genbank:GeneID: HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
Portal protein:vir:95449
protein:vir:3139
protein:vir:80165
PA11
VpV262
Pf-WMP3
51 %
35 %
21 %
TermL protein:vir:2600
protein:vir:95431
protein:vir:3140
SIO1
PA11
VpV262
100 %
50 %
38 %
Ad3 protein:vir:2626
protein:vir:95463
protein:vir:3130
SIO1
PA11
VpV262
100 %
37 %
28 %
Hc3 protein:vir:2625
protein:vir:95475
protein:vir:3133
SIO1
PA11
VpV262
100 %
30 %
22 %