BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019402.1_cdsid_YP_006987652.1 [gene=D858_gp112] [protein=terminase large subunit] [protein_id=YP_006987652.1] [location=3376..4860] (494 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: ter... 347 1e-97 gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: term... 258 1e-70 gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2... 257 2e-70 gi|1219|lcl|protein:vir:105519 Length: 475 # NCBI annotation: ph... 257 2e-70 gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp... 254 1e-69 gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 43 9e-06 gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF... 40 5e-05 gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: la... 40 5e-05 gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hyp... 40 6e-05 gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp4... 34 0.004 gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF... 32 0.014 gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: ter... 32 0.016 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 32 0.019 gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF... 32 0.020 gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: sim... 32 0.024 gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF... 31 0.026 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 31 0.027 gi|8126|lcl|protein:vir:102661 Length: 568 # NCBI annotation: te... 31 0.038 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 28 0.32 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 28 0.32 gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF... 26 0.91 gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hyp... 26 1.2 gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP... 25 2.0 gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP... 25 2.0 gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP... 25 2.0 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 25 2.2 gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: pu... 24 4.1 gi|1431|lcl|protein:vir:93626 Length: 530 # NCBI annotation: Bce... 23 6.9 gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3... 23 8.5 >gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: terminase # Family: family:all:1730 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775255;genbank:gi:27476053;genbank:GeneID :2700601 Length = 482 Score = 347 bits (891), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 194/465 (41%), Positives = 270/465 (58%), Gaps = 18/465 (3%) Query: 24 EMREKAIKYNRIDNFDPYKFQKEFYAASAKYKRRFLCAANRVGKSYSEAVEVYYHLSGLY 83 E+ E+ KY R++ + PY +Q++F AAS+ + NR GK+Y+ A + HL+G Y Sbjct: 13 ELAERQ-KYFRMNQYTPYGWQEKFIAASSNCAQLLAMTGNRCGKTYTGAFIMACHLTGRY 71 Query: 84 PEWWEGHRFNYPILCWAVGITGDSTRKVLQKELFGTPMGKDKEAIGTGAIPR-DLIDIET 142 PEWW G +F+ P+ CWA GI+ D+TR +LQ EL G K+ EA GTG IP+ D++ E Sbjct: 72 PEWWTGRKFDKPVNCWAAGISTDTTRDILQSELLGD--WKNPEAFGTGMIPKEDIVKTER 129 Query: 143 IEKDGNIVKIAKVKHHDANGDFDGWSTLEFRSTQQGEHVLMGATVDYIWLDEEDPFKSME 202 E V+ V+H G S+L F+S + + MG +D IWLDEE P + Sbjct: 130 REGKPGCVQAVMVRHVSG-----GLSSLIFKSYEMSQDKFMGTAIDVIWLDEECP---KD 181 Query: 203 IYAQCVTRTATTGGLITITATPENGLTKLVDLFMKDNSGYLYFQNATWDDAPHLDEETKA 262 IY QCVTRTATTGG++ +T TPE+GLT++V F++D + +A+W+DAPHL E K Sbjct: 182 IYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFLIHASWEDAPHLSPEVKE 241 Query: 263 ELLASIPAWQHEMRSRGIPMMGEGLVYDISERDIVIDPIEIPSHWRRLVAIDIGISHDTA 322 +LL+ + MR+ GIPM+G G+V+ I E V +P +IP H+ R++ ID+G H A Sbjct: 242 QLLSVYSPAERRMRAEGIPMLGSGVVFPILEEKFVCEPFDIPDHFHRIIGIDLGFDHPNA 301 Query: 323 AVWSAYDAATDTIYIYDCYHAAAGVPAMHATAINAR-GNWIPVILPHDA---DNTERGSG 378 A+DA D Y+YD + MHA AI + G+ IPV++PHDA D G Sbjct: 302 IACVAWDAEKDKYYLYDERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATSGR- 360 Query: 379 RSVASYYSEAGVNVMPETFYNPIDWTGKK-NNFVEPGIIEMLQRMKTGRLKVFSTCGRFF 437 R V + +NV+ E F NP GK N VE G+ ML RM+ G LKVF+TC F Sbjct: 361 RFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFL 420 Query: 438 EEMRRYHRKDGKIVKEFDDTMDAARYSALSVIGRGVSAGEASAGY 482 +EM+ YHRKDGKIV DD + A RY+ L ++GY Sbjct: 421 KEMKMYHRKDGKIVDRNDDMISATRYALLMASRHARPGAVRNSGY 465 >gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: terminase large subunit # Family: family:all:1730 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063734;genbank:gi:51236724;genbank:GeneID :2944239 Length = 499 Score = 258 bits (659), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 159/440 (36%), Positives = 223/440 (50%), Gaps = 24/440 (5%) Query: 38 FDPYKFQKEFYAASAKYKRRFLCAANRVGKSYSEAVEVYYHLSGLYPEW----------- 86 F PY Q+EF A Y R A N++GKS++ A EV +HL+G YP Sbjct: 37 FAPYSKQREFIDAGHDYPERCFMAGNQLGKSFTGAAEVAFHLTGRYPGTKGYPADGKYGG 96 Query: 87 -WEGHRFNYPILCWAVGITGDSTRKVLQKELFGTPMGKDKEAIGTGAIPR-DLIDIETIE 144 W+G RF P++ W G T ++ K Q+ L G D+ G G+IP+ D+I + Sbjct: 97 EWKGKRFYEPVVFWIGGETNETVTKTTQRILCGRIEENDEP--GYGSIPKEDIISWKKSP 154 Query: 145 KDGNIVKIAKVKHHDANGDFDGWSTLEFRSTQQGEHVLMGATVDYIWLDEEDPFKSMEIY 204 N+V VKHH A+G DG S F+ QG G T+ +W DEE P+ IY Sbjct: 155 FFPNLVDHLLVKHHTADGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYS---IY 211 Query: 205 AQCVTRTATTGGLITITATPENGLTKLVDLFMKDNSGYLYFQNATWDDAPHLDEETKAEL 264 + +TRT G +T TP G++ +V F+K+ S N T DA H +E K ++ Sbjct: 212 GEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQI 271 Query: 265 LASIPAWQHEMRSRGIPMMGEGLVYDISERDIVIDPIEIPSHWRRLVAIDIGISHDTAAV 324 +AS P + E R+RGIP MG G ++ I E I P E P H+ + A D G +H A + Sbjct: 272 IASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIDAQDFGWNHPQAHI 331 Query: 325 WSAYDAATDTIYIYDCYHAAAGVPAMHATAINARGNWIPVILPHDADNTERGSGRSVASY 384 +D D Y+ + + A+ + N IPV PHD E+G G + + Sbjct: 332 QLWWDKDADVFYLARVWKKSENTAVQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQ 391 Query: 385 YSEAGVNVMPETFYNPIDWTGKKNNFVEPGIIEMLQRMKTGRLKVFSTCGRFFEEMRRYH 444 Y++AG +++P+ P N VE GI E+ M GR KVF+TC FFEE R YH Sbjct: 392 YADAGFSMLPDHATFP-----DGGNSVESGISELRDLMLEGRFKVFNTCEPFFEEFRLYH 446 Query: 445 R-KDGKIVKEFDDTMDAARY 463 R ++GKIVK DD +DA RY Sbjct: 447 RDENGKIVKTNDDVLDATRY 466 >gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2 # Family: family:all:1730 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720326;genbank:gi:24371583;genbank:GeneID :955800 Length = 517 Score = 257 bits (656), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 159/440 (36%), Positives = 221/440 (50%), Gaps = 24/440 (5%) Query: 38 FDPYKFQKEFYAASAKYKRRFLCAANRVGKSYSEAVEVYYHLSGLYPEW----------- 86 F PY Q+EF A Y R A N++GKS++ A EV +HL+G YP Sbjct: 55 FTPYSKQREFIDAGHDYPERCFMAGNQLGKSFTGAAEVAFHLTGRYPGTKGYPADGKYGG 114 Query: 87 -WEGHRFNYPILCWAVGITGDSTRKVLQKELFGTPMGKDKEAIGTGAIPR-DLIDIETIE 144 W+G RF P++ W G T ++ K Q+ L G D+ G G+IP+ D+I + Sbjct: 115 EWKGKRFYEPVVFWVGGETNETVTKTTQRILCGRIEENDEP--GYGSIPKEDIISWKKSP 172 Query: 145 KDGNIVKIAKVKHHDANGDFDGWSTLEFRSTQQGEHVLMGATVDYIWLDEEDPFKSMEIY 204 N+V VKHH G DG S F+ QG G T+ +W DEE P+ IY Sbjct: 173 FFPNLVDHLLVKHHTPEGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYS---IY 229 Query: 205 AQCVTRTATTGGLITITATPENGLTKLVDLFMKDNSGYLYFQNATWDDAPHLDEETKAEL 264 + +TRT G +T TP G++ +V F+K+ S N T DA H +E K ++ Sbjct: 230 GEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQI 289 Query: 265 LASIPAWQHEMRSRGIPMMGEGLVYDISERDIVIDPIEIPSHWRRLVAIDIGISHDTAAV 324 +AS P + E R+RGIP MG G ++ I E I P E P H+ + A D G +H A + Sbjct: 290 IASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIDAQDFGWNHPQAHI 349 Query: 325 WSAYDAATDTIYIYDCYHAAAGVPAMHATAINARGNWIPVILPHDADNTERGSGRSVASY 384 +D D Y+ + + A+ + N IPV PHD E+G G + + Sbjct: 350 QLWWDKDADVFYLARVWKKSENTAVQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQ 409 Query: 385 YSEAGVNVMPETFYNPIDWTGKKNNFVEPGIIEMLQRMKTGRLKVFSTCGRFFEEMRRYH 444 Y++AG +++PE P N VE GI E+ M GR KVF+TC FFEE R YH Sbjct: 410 YADAGFSMLPEHATFP-----DGGNSVESGIGELRDLMLEGRFKVFNTCEPFFEEFRLYH 464 Query: 445 R-KDGKIVKEFDDTMDAARY 463 R ++GKIVK DD +DA RY Sbjct: 465 RDENGKIVKTNDDVLDATRY 484 >gi|1219|lcl|protein:vir:105519 Length: 475 # NCBI annotation: phage terminase large subunit # Family: family:all:1730 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516188;genbank:gi:89885991;genbank:GeneID :3964379 Length = 475 Score = 257 bits (656), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 164/453 (36%), Positives = 234/453 (51%), Gaps = 27/453 (5%) Query: 20 IDLLEMREKAIKYNRIDNFDPYKFQKEFYAASAKYKRRFLCAANRVGKSYSEAVEVYYHL 79 I+ RE A +Y Y +Q++F SA+Y + L AANRVGK+ + H Sbjct: 16 INEQRRREHACRYRHYYGTR-YDWQRKFIGLSAEYAQVALIAANRVGKTDTATYVDAVHA 74 Query: 80 SGLYPEWWEGHRFNYPILCWAVGITGDSTRKVLQKELFGTPMGKDKEAIGTGAIPRDLI- 138 G YPE W G+RF++ + W +G +G+ R +LQ L G K G IP + I Sbjct: 75 LGDYPEAWSGYRFSHAPVIWCLGYSGEKCRDLLQTPLLGR---KTDNGWQGGLIPGERIA 131 Query: 139 DIETIEKDGNIVKIAKVKHHDANGDFDGWSTLEFRSTQQGEHVLMGATVDYIWLDEEDPF 198 D E + N V+ A ++H +G S ++F S QG+H LMG VD+ +DEE Sbjct: 132 DTEAMTGTTNAVRTAYIRH--VSGLL---SKIQFWSYSQGQHALMGDCVDWFHIDEEP-- 184 Query: 199 KSMEIYAQCVTRTAT----TGGLITITATPENGLTKLVDLFMKDNSGYLYFQNATWDDAP 254 + IY Q +TRTAT GG +T TPENG T LV FM + S N WDDAP Sbjct: 185 RDPTIYPQVLTRTATGDRGKGGRGILTFTPENGRTDLVIGFMDNPSPAQTCINVGWDDAP 244 Query: 255 HLDEETKAELLASIPAWQHEMRSRGIPMMGEGLVYDISERDIVIDPIEIPSHWRRLVAID 314 HL ++ K +LLAS PA Q +MR++GIPM+G G +YD+ E I DP +P+HW + +D Sbjct: 245 HLSQKVKNDLLASFPAHQRDMRTKGIPMLGHGRIYDLGEDFITCDPFPVPAHWLVIDGMD 304 Query: 315 IGISHDTAAVWSAYDAATDTIYIYDCYHAAAGVPAMHATAINARGNWIPVILPHDADNTE 374 G H A + +D + Y+ Y A PA +A++ +P P D TE Sbjct: 305 FGWDHPQAHIQLVWDNENEMFYVTRAYKARQVSPAEAYSAVSIWAENVPTAWPSDGLMTE 364 Query: 375 RGSGRSVASYYSEAGVNVMPETFYNPIDWTGKKNNFVEPGIIEMLQRMKTGRLKVFSTCG 434 +GSG +YY +AG ++ +P W + +E+ M+ G+ KVFS Sbjct: 365 KGSGIQQKTYYDDAGFCML----RDPAQWPDGSRS------VELHDLMRRGKFKVFSGLR 414 Query: 435 RFFEEMRRYHRKD-GKIVKEFDDTMDAARYSAL 466 FF+E YHR + +IVK DD +DA RY+ + Sbjct: 415 DFFDEYNFYHRDEKSRIVKMRDDILDAVRYAYM 447 >gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp2 # Family: family:all:1730 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006405;genbank:gi:46358697;genbank:GeneID :2777092 Length = 499 Score = 254 bits (650), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 157/440 (35%), Positives = 220/440 (50%), Gaps = 24/440 (5%) Query: 38 FDPYKFQKEFYAASAKYKRRFLCAANRVGKSYSEAVEVYYHLSGLYPEW----------- 86 F PY Q+EF A Y R A N++GKS++ A EV +HL+G YP Sbjct: 37 FTPYSKQREFIDAGHDYPERCFMAGNQLGKSFTGAAEVAFHLTGRYPGTKGYPADGKYGG 96 Query: 87 -WEGHRFNYPILCWAVGITGDSTRKVLQKELFGTPMGKDKEAIGTGAIPR-DLIDIETIE 144 W+G RF P++ W G T ++ K Q+ L G D+ G G+IP+ D+I + Sbjct: 97 EWKGKRFYEPVVFWVGGETNETVTKTTQRILCGRIEENDEP--GYGSIPKEDIISWKKSP 154 Query: 145 KDGNIVKIAKVKHHDANGDFDGWSTLEFRSTQQGEHVLMGATVDYIWLDEEDPFKSMEIY 204 N+V VKHH G DG S F+ QG G T+ +W DEE P+ IY Sbjct: 155 FFPNLVDHLLVKHHTPEGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYS---IY 211 Query: 205 AQCVTRTATTGGLITITATPENGLTKLVDLFMKDNSGYLYFQNATWDDAPHLDEETKAEL 264 + +TRT G +T TP G++ +V F+K+ S N T DA H +E K ++ Sbjct: 212 GEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQI 271 Query: 265 LASIPAWQHEMRSRGIPMMGEGLVYDISERDIVIDPIEIPSHWRRLVAIDIGISHDTAAV 324 +AS P + E R+RGIP MG G ++ I E I P E P H+ + A D G +H A + Sbjct: 272 IASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIDAQDFGWNHPQAHI 331 Query: 325 WSAYDAATDTIYIYDCYHAAAGVPAMHATAINARGNWIPVILPHDADNTERGSGRSVASY 384 +D D Y+ + + A+ + N IPV PHD E+G G + + Sbjct: 332 QLWWDKDADVFYLARVWKKSENTAVQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQ 391 Query: 385 YSEAGVNVMPETFYNPIDWTGKKNNFVEPGIIEMLQRMKTGRLKVFSTCGRFFEEMRRYH 444 Y++AG +++P+ P N VE GI E+ M GR K F+TC FFEE R YH Sbjct: 392 YADAGFSMLPDHATFP-----DGGNSVESGISELRDLMLEGRFKAFNTCEPFFEEFRLYH 446 Query: 445 R-KDGKIVKEFDDTMDAARY 463 R ++GKIVK DD +DA RY Sbjct: 447 RDENGKIVKTNDDVLDATRY 466 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 42.7 bits (99), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 74/343 (21%), Positives = 131/343 (38%), Gaps = 44/343 (12%) Query: 148 NIVKIAKVKHHDANGDFDGWSTLEFRSTQQGEHVLMGATVDYIWLDEEDPFKSMEIYAQC 207 N++ I+K H + F G + + ++ G T+ + DE Q Sbjct: 100 NMITISKNGHTNFYFIFGG-------KDEASQDLVQGITLAGFFFDEV-ALMPQSFVNQA 151 Query: 208 VTRTATTGGLITITATPENGL----TKLVDLFMKDNSGYLYFQNATWDDAPHLDEET--K 261 R + TG + P +D + ++F T D P LD T + Sbjct: 152 TARCSVTGSKMWFNCNPSGPFHWFKLNWIDQMKDKRALRIHF---TMHDNPSLDSVTINR 208 Query: 262 AELLASIPAWQHEMRSRGIPMMGEGLVYDISERDIVIDPIEIPSHWRRL-VAIDIGISHD 320 E + S +Q ++ G+ +M EG++YD ++D ++ E+P+H+ + V+ D G + Sbjct: 209 YERMYSGVFYQRYIQ--GLWVMSEGVIYDNFDKDTMVVN-ELPNHFEKYYVSCDYGTLNP 265 Query: 321 TAAVWSAYDAATDTIYIYDCYHAAAGVPAMHATAINARGNWIPVILPHDADNTERGSGRS 380 TA + + Y+ Y+ + + T + + A+ S S Sbjct: 266 TAFL--LWGRNHGVWYLVKEYYYSGRTTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAAS 323 Query: 381 VASYYSEAGVNVMPETFYNPIDWTGKKNNFVEPGIIEMLQRMKTGRLKVFSTCGRFFEEM 440 ++ + G V K N V GI M G++K C F+E+ Sbjct: 324 FSTTLRQNGFKVR------------KAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKEL 371 Query: 441 RRY--------HRKDGKIVKEFDDTMDAARYSALSVIGRGVSA 475 Y H +D K VK+ D DA RY ++I + V+A Sbjct: 372 ASYVWDDKAAEHGED-KPVKQHDHACDAMRYFVYTIIYKKVTA 413 >gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240228;genbank:gi:66395894;genbank:GeneID :5133253 Length = 407 Score = 40.4 bits (93), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/279 (21%), Positives = 115/279 (41%), Gaps = 41/279 (14%) Query: 202 EIYAQCVTRTATTGGLITITATPENGLTKLVDLFMKDN---SGYLYFQNATWDDAPHLDE 258 E++ + +R + TG I + P++ L+ ++++ +G L Q DD L++ Sbjct: 140 EVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQ-FKLDDNNFLND 198 Query: 259 ETKAELLASIPAWQ-HEMRSRGIPMMGEGLVY---DISERDIVIDPIEIPSHWRRLVAID 314 K + AS P+ +E G+ + G+G+VY D++E I D ++ +D Sbjct: 199 RYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVD 258 Query: 315 IGISHDTAAVWSAYDAATDTIYIYDCYHAAAGVP--AMHATAINAR-GN---WIPVILPH 368 G H + V + +I + H + + A I +R GN + P Sbjct: 259 WGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPE 318 Query: 369 DADNTERGSGRSVASYYSEAGVNVMPETFYNPIDWTGKKNNFVEPGIIEMLQRMKTGRLK 428 R R++ + S+ G+ E+ + K +L Sbjct: 319 YITEFRRHRLRAINADKSKLS------------------------GVEEVAKLFKQNKLL 354 Query: 429 V-FSTCGRFFEEMRRY--HRKDGKIVKEFDDTMDAARYS 464 V + RF +E+ +Y H +G+ +KEFDD +D+ RY+ Sbjct: 355 VLYDNMDRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYA 393 >gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004370;genbank:gi:122891825;genbank:Ge neID:4712368 Length = 407 Score = 40.4 bits (93), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/279 (21%), Positives = 115/279 (41%), Gaps = 41/279 (14%) Query: 202 EIYAQCVTRTATTGGLITITATPENGLTKLVDLFMKDN---SGYLYFQNATWDDAPHLDE 258 E++ + +R + TG I + P++ L+ ++++ +G L Q DD L++ Sbjct: 140 EVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQ-FKLDDNNFLND 198 Query: 259 ETKAELLASIPAWQ-HEMRSRGIPMMGEGLVY---DISERDIVIDPIEIPSHWRRLVAID 314 K + AS P+ +E G+ + G+G+VY D++E I D ++ +D Sbjct: 199 RYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVD 258 Query: 315 IGISHDTAAVWSAYDAATDTIYIYDCYHAAAGVP--AMHATAINAR-GN---WIPVILPH 368 G H + V + +I + H + + A I +R GN + P Sbjct: 259 WGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPE 318 Query: 369 DADNTERGSGRSVASYYSEAGVNVMPETFYNPIDWTGKKNNFVEPGIIEMLQRMKTGRLK 428 R R++ + S+ G+ E+ + K +L Sbjct: 319 YITEFRRHRLRAINADKSKLS------------------------GVEEVAKLFKQNKLL 354 Query: 429 V-FSTCGRFFEEMRRY--HRKDGKIVKEFDDTMDAARYS 464 V + RF +E+ +Y H +G+ +KEFDD +D+ RY+ Sbjct: 355 VLYDNMDRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYA 393 >gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695104;genbank:gi:23455873;genbank:GeneID :955606 Length = 411 Score = 40.0 bits (92), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 69/283 (24%), Positives = 115/283 (40%), Gaps = 41/283 (14%) Query: 203 IYAQCVTRTATTGGLITITATPENGLTKLVDLFMKDNSGYLYFQNATWDDAPHLDEETKA 262 ++ + ++R + G + + P+N L ++ N G + + DD L + Sbjct: 140 VFKEIISRCSGDGARVVWDSNPDNPNHWLNRDYIGKNDGKIIDFSFKLDDNTFLSKRYID 199 Query: 263 ELLASIPAWQHEMRS-RGIPMMGEGLVY-DISERDIVIDPIEIPSHWRRLVAIDIGISHD 320 + A+ P + R G+ + EG +Y D + V+D E+P R ID G +H Sbjct: 200 SIKAATPKGKFYDRDILGLWTVAEGAIYADYDSKIHVVD--ELPEMKRYFGGIDWGYTHY 257 Query: 321 TAAVWSAYDAATDTIYIYDCYHAAAGVPAMHATAINAR------GNWIPVILPHDADNTE 374 + V + + Y+ D AA + AR GN +P AD+ Sbjct: 258 GSIVIVG-EGVDNNFYLVDG--VAAQFKEIDWWVEQARKLTGIYGN-----IPFYADSAR 309 Query: 375 RGSGRSVASYYSEAGVNVMPETFYNPIDWTGKKNNFVEPGIIEMLQRMKTGRLKV-FSTC 433 VA + +E G ++M N V GI + + K +L V Sbjct: 310 P---EHVARFENE-GFDIM------------NANKSVIAGIELIAKLFKEKKLYVKRGFV 353 Query: 434 GRFFEEMRRYHRKDGKI----VKEFDDTMDAARYSALS--VIG 470 RFF+E+ +Y K+ +KEFDD +D+ RY+ S VIG Sbjct: 354 PRFFDEIYQYRWKENSTKDEPLKEFDDVLDSVRYAIYSDYVIG 396 >gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp411 # Family: family:all:54 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056675;genbank:gi:9635008;genbank:GeneID: 1262679 Length = 411 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 68/283 (24%), Positives = 111/283 (39%), Gaps = 41/283 (14%) Query: 203 IYAQCVTRTATTGGLITITATPENGLTKLVDLFMKDNSGYLYFQNATWDDAPHLDEETKA 262 ++ + ++R + G + + P+N L ++ N G + + DD L + Sbjct: 140 VFKEIISRCSGDGARVVWDSNPDNPNHWLNRDYIGKNDGKIIDFSFKLDDNTFLSKRYID 199 Query: 263 ELLASIPAWQHEMRS-RGIPMMGEGLVY-DISERDIVIDPIEIPSHWRRLVAIDIGISHD 320 + A P + R G + EG +Y D + V+D E+P R ID G +H Sbjct: 200 SIKAVTPKGKFYDRDILGHWTVAEGAIYADYDSKIHVVD--ELPEMKRYFGGIDWGYTHY 257 Query: 321 TAAVWSAYDAATDTIYIYDCYHAAAGV------PAMHATAINARGNWIPVILPHDADNTE 374 + V + + Y+ D A A T I GN +P AD+ Sbjct: 258 GSIVIVG-EGVDNNFYLVDGVRAQFKEIDWWVEQARKLTGI--YGN-----IPFYADSAR 309 Query: 375 RGSGRSVASYYSEAGVNVMPETFYNPIDWTGKKNNFVEPGIIEMLQRMKTGRLKV-FSTC 433 VA + +E G ++ N V GI + + K +L V Sbjct: 310 ---PEHVARFENE-GFDI------------SNANKSVIAGIELIAKLFKEQKLYVKRGFV 353 Query: 434 GRFFEEMRRYHRKDGKI----VKEFDDTMDAARYSALS--VIG 470 RFF+E+ +Y K+ +KEFDD +D+ RY+ S VIG Sbjct: 354 PRFFDEIYQYRWKENSTKDEPLKEFDDVLDSVRYAIYSDYVIG 396 >gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240605;genbank:gi:66396276;genbank:GeneID :5133629 Length = 402 Score = 32.3 bits (72), Expect = 0.014, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 114/299 (38%), Gaps = 49/299 (16%) Query: 191 WLDEEDPFKSMEIYAQCVTRTATTGGLITITATPENGLTKLVDLFMKDNSGYLY------ 244 +L+E +M I + +R + G I I PEN + + ++ D SG Sbjct: 121 FLNEGTALHNMFI-KEVFSRCSHKGARILIDTNPENPMHPVKKDYI-DKSGQRLSNGRLN 178 Query: 245 ---FQNATWDDAPHLDEETKAELLASIPAWQHEMRS-RGIPMMGEGLVY-DISERDIVID 299 FQ +D+ LDEE ++AS P R G + EG+VY D E+ I Sbjct: 179 IKAFQFTLFDNT-FLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIT 237 Query: 300 PIEIPSHW--RRLVAIDIGISHDTAAVWSAYDAATDTIYIYDCYHAAAGVP---AMHATA 354 E + R+ +D G H + + A D + I + H + A+ Sbjct: 238 EEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGV 297 Query: 355 INARGNWIPVILPHDADNTERGSGRSVASYYSE----AGVNVMPETFYNPIDWTGKKNNF 410 I G+ + ++ ER + + Y++ AG+ V+ F Sbjct: 298 IKRHGDILFYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLF------------- 344 Query: 411 VEPGIIEMLQRMKTGRLKVFSTCGRFFEEMRRYHRKDG--KIVKEFDDTMDAARYSALS 467 L ++ + KV F EE+ Y KD + VK DDT+DA RY+ + Sbjct: 345 -------KLNKISIIKEKV----SLFKEEIYNYVWKDNADEPVKLNDDTLDALRYAVYT 392 >gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238487;genbank:gi:66391763;genbank:GeneID :5176917 Length = 195 Score = 32.0 bits (71), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Query: 408 NNFVEPGIIEMLQRMKTGRLKV-FSTCGRFFEEMRRYHRKDGKI----VKEFDDTMDAAR 462 N V GI + + K +L V RFF+E+ +Y K+ +KEFDD +D+ R Sbjct: 111 NKSVIAGIELIAKLFKEEKLYVKRGFVPRFFDEIYQYRWKENSTKDEPLKEFDDVLDSVR 170 Query: 463 YSALS--VIG 470 Y+ S VIG Sbjct: 171 YAIYSDYVIG 180 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 32.0 bits (71), Expect = 0.019, Method: Compositional matrix adjust. Identities = 63/307 (20%), Positives = 110/307 (35%), Gaps = 32/307 (10%) Query: 176 QQGEHVLMGATVDYIWLDEEDPFKSMEIYAQCVTRTATTGGLITITATPENGL----TKL 231 + + ++ G T+ I+ DE Q R + TG P+ Sbjct: 127 ESSQDLIQGLTLAGIFFDEV-ALMPESFVNQGTGRCSVTGSKWWFNCNPDGPYHWFKVNW 185 Query: 232 VDLFMKDNSGYLYFQNATWDDAPHLDEETKAELLASIPAWQHEMRSRGIPMMGEGLVYDI 291 +D N YL+F DD L E K + ++ +G+ + EG+VYD+ Sbjct: 186 IDKAETKNMLYLHFDM---DDNLSLSENIKKRYRSQYQGVFYQRYIQGLWTVAEGIVYDM 242 Query: 292 SERDI-VIDPIEIPSHWRRLVAIDIGISHDTAAVWSAYDAATDTIYIYDCYHAA--AGVP 348 +D V+ + S + V++D G + T + D + Y++ V Sbjct: 243 FSKDKHVVSTLPEMSKLGKYVSVDYGTQNATVFLLWEKDIIGKYYLTREYYYSGRDENVQ 302 Query: 349 AMHATAINARGNWIPVILPHDADNTERGSGRSVASYYSEAGVNVMPETFYNPIDWTGKKN 408 +A + W+ D + S AS+ +E + + Y K Sbjct: 303 KTNAEYADDLTAWLG-----DTNIDRIIIDPSAASFIAE-----LKKRGYK----IKKAR 348 Query: 409 NFVEPGIIEMLQRMKTGRLKVFSTCGRFFEEMRRY-------HRKDGKIVKEFDDTMDAA 461 N V GI + + ++ V +C +E Y + K +K+FD MDA Sbjct: 349 NNVLEGIRFVGSMLGQEKIAVHESCVNTLKEFHAYVWDEKASANGEDKPIKQFDHAMDAL 408 Query: 462 RYSALSV 468 RY +V Sbjct: 409 RYFCYTV 415 >gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240453;genbank:gi:66396122;genbank:GeneID :5133517 Length = 403 Score = 31.6 bits (70), Expect = 0.020, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 114/299 (38%), Gaps = 49/299 (16%) Query: 191 WLDEEDPFKSMEIYAQCVTRTATTGGLITITATPENGLTKLVDLFMKDNSGYLY------ 244 +L+E +M I + +R + G I I PEN + + ++ D SG Sbjct: 122 FLNEGTALHNMFI-KEVFSRCSYKGARILIDTNPENPMHPVKKDYI-DKSGQRLSNGRLN 179 Query: 245 ---FQNATWDDAPHLDEETKAELLASIPAWQHEMRS-RGIPMMGEGLVY-DISERDIVID 299 FQ +D+ LDEE ++AS P R G + EG+VY D E+ I Sbjct: 180 IKAFQFTLFDNT-FLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIK 238 Query: 300 PIEIPSHW--RRLVAIDIGISHDTAAVWSAYDAATDTIYIYDCYHAAAGVP---AMHATA 354 E + R+ +D G H + + A D + I + H + A+ Sbjct: 239 EEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGV 298 Query: 355 INARGNWIPVILPHDADNTERGSGRSVASYYSE----AGVNVMPETFYNPIDWTGKKNNF 410 I G+ + ++ ER + + Y++ AG+ V+ F Sbjct: 299 IKRHGDILFYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLF------------- 345 Query: 411 VEPGIIEMLQRMKTGRLKVFSTCGRFFEEMRRYHRKDG--KIVKEFDDTMDAARYSALS 467 L ++ + KV F EE+ Y KD + VK DDT+DA RY+ + Sbjct: 346 -------KLNKIFIIKEKV----SLFKEEIYNYVWKDNADEPVKLNDDTLDALRYAVYT 393 >gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: similar to phage O1205 ORF26 ( putative large subunit terminase) # Family: family:all:54 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510934;genbank:gi:17426268;genbank:GeneID :927381 Length = 405 Score = 31.6 bits (70), Expect = 0.024, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 114/299 (38%), Gaps = 49/299 (16%) Query: 191 WLDEEDPFKSMEIYAQCVTRTATTGGLITITATPENGLTKLVDLFMKDNSGYLY------ 244 +L+E +M I + +R + G I I PEN + + ++ D SG Sbjct: 124 FLNEGTALHNMFI-KEVFSRCSYKGARILIDTNPENPMHPVKKDYI-DKSGQRLSNGRLN 181 Query: 245 ---FQNATWDDAPHLDEETKAELLASIPAWQHEMRS-RGIPMMGEGLVY-DISERDIVID 299 FQ +D+ LDEE ++AS P R G + EG+VY D E+ I Sbjct: 182 IKAFQFTLFDNT-FLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIK 240 Query: 300 PIEIPSHW--RRLVAIDIGISHDTAAVWSAYDAATDTIYIYDCYHAAAGVP---AMHATA 354 E + R+ +D G H + + A D + I + H + A+ Sbjct: 241 EEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGV 300 Query: 355 INARGNWIPVILPHDADNTERGSGRSVASYYSE----AGVNVMPETFYNPIDWTGKKNNF 410 I G+ + ++ ER + + Y++ AG+ V+ F Sbjct: 301 IKRHGDILFYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLF------------- 347 Query: 411 VEPGIIEMLQRMKTGRLKVFSTCGRFFEEMRRYHRKDG--KIVKEFDDTMDAARYSALS 467 L ++ + KV F EE+ Y KD + VK DDT+DA RY+ + Sbjct: 348 -------KLNKIFIIKEKV----SLFKEEIYNYVWKDNADEPVKLNDDTLDALRYAVYT 395 >gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240530;genbank:gi:66396200;genbank:GeneID :5133586 Length = 402 Score = 31.2 bits (69), Expect = 0.026, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 114/299 (38%), Gaps = 49/299 (16%) Query: 191 WLDEEDPFKSMEIYAQCVTRTATTGGLITITATPENGLTKLVDLFMKDNSGYLY------ 244 +L+E +M I + +R + G I I PEN + + ++ D SG Sbjct: 121 FLNEGTALHNMFI-KEVFSRCSHKGARILIDTNPENPMHPVKKDYI-DKSGQRLSNGRLN 178 Query: 245 ---FQNATWDDAPHLDEETKAELLASIPAWQHEMRS-RGIPMMGEGLVY-DISERDIVID 299 FQ +D+ LDEE ++AS P R G + EG+VY D E+ I Sbjct: 179 IKAFQFTLFDNT-FLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIT 237 Query: 300 PIEIPSHW--RRLVAIDIGISHDTAAVWSAYDAATDTIYIYDCYHAAAGVP---AMHATA 354 E + R+ +D G H + + A D + I + H + A+ Sbjct: 238 EEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGV 297 Query: 355 INARGNWIPVILPHDADNTERGSGRSVASYYSE----AGVNVMPETFYNPIDWTGKKNNF 410 I G+ + ++ ER + + Y++ AG+ V+ F Sbjct: 298 IKRHGDILFYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLF------------- 344 Query: 411 VEPGIIEMLQRMKTGRLKVFSTCGRFFEEMRRYHRKDG--KIVKEFDDTMDAARYSALS 467 L ++ + KV F EE+ Y KD + VK DDT+DA RY+ + Sbjct: 345 -------KLNKIFIIKEKV----SLFKEEIYNYVWKDNADEPVKLNDDTLDALRYAVYT 392 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 31.2 bits (69), Expect = 0.027, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 23/50 (46%) Query: 307 WRRLVAIDIGISHDTAAVWSAYDAATDTIYIYDCYHAAAGVPAMHATAIN 356 + L+ ID+G TA + Y TDT Y+ + Y A A HA I Sbjct: 279 FETLLGIDVGYRDPTAVLTIKYHYDTDTYYVLEEYQQAEKTTAQHAAYIQ 328 >gi|8126|lcl|protein:vir:102661 Length: 568 # NCBI annotation: terminase # Family: family:all:147 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024418;genbank:gi:48696639;genbank:GeneID :2948128 Length = 568 Score = 30.8 bits (68), Expect = 0.038, Method: Compositional matrix adjust. Identities = 13/26 (50%), Positives = 17/26 (65%) Query: 364 VILPHDADNTERGSGRSVASYYSEAG 389 +ILPHDADNTE G++ + E G Sbjct: 431 IILPHDADNTEVSHGKTRKEWVLEEG 456 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:G eneID:5600564 Length = 485 Score = 27.7 bits (60), Expect = 0.32, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 31 KYNRIDNFDPYKFQKEFYAASAKYKRRFLCAANRVGKSYSEAVEVYYHL 79 K+ + + P+ Q + ++AK RR C + GKS + +VE + L Sbjct: 9 KFFELLGYKPHHVQLAIHRSTAK--RRVACLGRQSGKSEAASVEAVFEL 55 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:G eneID:5600506 Length = 485 Score = 27.7 bits (60), Expect = 0.32, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 31 KYNRIDNFDPYKFQKEFYAASAKYKRRFLCAANRVGKSYSEAVEVYYHL 79 K+ + + P+ Q + ++AK RR C + GKS + +VE + L Sbjct: 9 KFFELLGYKPHHVQLAIHRSTAK--RRVACLGRQSGKSEAASVEAVFEL 55 >gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240074;genbank:gi:66395738;genbank:GeneID :5133130 Length = 419 Score = 26.2 bits (56), Expect = 0.91, Method: Compositional matrix adjust. Identities = 11/21 (52%), Positives = 16/21 (76%) Query: 126 EAIGTGAIPRDLIDIETIEKD 146 EAIG+G +P + + IETI K+ Sbjct: 230 EAIGSGVVPFNNLRIETIPKE 250 >gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hypothetical protein # Family: family:all:32729 # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919076;genbank:gi:119757034;genbank:GeneI D:4606064 Length = 447 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 406 KKNNFVEPGIIEMLQRMKT---GRLKVFST--CGRFFEEMRRYHRKDGKIVKEFDDTMDA 460 K ++ GI + R+ GR V T CG +E Y K D +DA Sbjct: 364 KAEKSLDGGIDHVRSRLAMDDEGRPGVLVTDRCGELIQEFLSYKEDHVGTSKAQDHALDA 423 Query: 461 ARYSALSVIGRGVSAGEASA 480 RY+ + R ++S Sbjct: 424 LRYALFTHTPRDTGDSDSSG 443 >gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046758;genbank:gi:9630329;genbank:GeneID: 1261531 Length = 590 Score = 25.0 bits (53), Expect = 2.0, Method: Compositional matrix adjust. Identities = 12/46 (26%), Positives = 21/46 (45%) Query: 269 PAWQHEMRSRGIPMMGEGLVYDISERDIVIDPIEIPSHWRRLVAID 314 P W E+ +RG E + D+S + + WR++V I+ Sbjct: 294 PFWSGELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQIVTIE 339 >gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839851;genbank:gi:30065706;genbank:GeneID :1260600 Length = 590 Score = 25.0 bits (53), Expect = 2.0, Method: Compositional matrix adjust. Identities = 12/46 (26%), Positives = 21/46 (45%) Query: 269 PAWQHEMRSRGIPMMGEGLVYDISERDIVIDPIEIPSHWRRLVAID 314 P W E+ +RG E + D+S + + WR++V I+ Sbjct: 294 PFWSGELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQIVTIE 339 >gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878200;genbank:gi:33438899;genbank:GeneID :1457734 Length = 590 Score = 25.0 bits (53), Expect = 2.0, Method: Compositional matrix adjust. Identities = 12/46 (26%), Positives = 21/46 (45%) Query: 269 PAWQHEMRSRGIPMMGEGLVYDISERDIVIDPIEIPSHWRRLVAID 314 P W E+ +RG E + D+S + + WR++V I+ Sbjct: 294 PFWSGELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQIVTIE 339 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 28 KAIKYNRIDNFDPYKF-QKEFYAASAKYKRRFLCAANRVGKSYSEAVEVYYHL 79 + + + R D Y+ Q F K++ +C A + GKS A + YHL Sbjct: 51 RLLPWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHL 103 >gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950600;genbank:gi:119953680;genbank:GeneI D:4643107 Length = 421 Score = 23.9 bits (50), Expect = 4.1, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 126 EAIGTGAIPRDLIDIETIEKD 146 EAIG+G +P + + IE I D Sbjct: 232 EAIGSGVVPFNNLQIEKIPDD 252 >gi|1431|lcl|protein:vir:93626 Length: 530 # NCBI annotation: Bcep22gp49 # Family: family:all:147 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944278;genbank:gi:38640355;genbank:GeneID :2658275 Length = 530 Score = 23.1 bits (48), Expect = 6.9, Method: Compositional matrix adjust. Identities = 8/17 (47%), Positives = 11/17 (64%) Query: 361 WIPVILPHDADNTERGS 377 W + LPHDAD+ +G Sbjct: 397 WDTMFLPHDADHVRQGQ 413 >gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3 # Family: family:all:169 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958058;genbank:gi:41057355;genbank:GeneID :2744226 Length = 589 Score = 23.1 bits (48), Expect = 8.5, Method: Compositional matrix adjust. Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 269 PAWQHEMRSRGIPMMGEGLVYDISERDIVIDPIEIPSHWRRLVAID 314 P W E+ ++G + + DIS + + WR++V I+ Sbjct: 294 PFWSGELFNKGRASAADRIEIDISHSALAGGLLCADGQWRQIVTIE 339 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.136 0.422 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 249,479 Number of Sequences: 514 Number of extensions: 12407 Number of successful extensions: 90 Number of sequences better than 100.0: 33 Number of HSP's better than 100.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 37 length of query: 494 length of database: 206,069 effective HSP length: 75 effective length of query: 419 effective length of database: 167,519 effective search space: 70190461 effective search space used: 70190461 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)