Virfam_CNT_anal:NC_018276

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P2559S | Genbank acc : NC_018276

Category to which the Query Phage was assigned :

The phage most likely belong to the Siphoviridae class
However, some subunits are missing to confidently assign it to one of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 68

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	13	lcl\|NC_018276.1_cdsid_YP_006560633.1	HHsearch (proba=92.93%)
Portal	11	lcl\|NC_018276.1_cdsid_YP_006560631.1	HHsearch (proba=98.93%)
TermL	1	lcl\|NC_018276.1_cdsid_YP_006560621.1	Blast (e-value=1e-20)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	17	lcl\|NC_018276.1_cdsid_YP_006560637.1	HHsearch (proba=95.44%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97433 protein:vir:94494 protein:vir:105334	92 88 PH15	14 % 14 % 18 %
Portal	protein:vir:97265 protein:vir:94956 protein:vir:95149	M6 Xp15 PA73	16 % 14 % 17 %
TermL	protein:vir:5248 protein:vir:103223 protein:vir:80106	Aaphi23 JK06 B054	25 % 24 % 23 %
Ne1	protein:vir:79091 protein:vir:107851 protein:vir:99196	phiE255 BcepMu DMS3	17 % 18 % 15 %