Virfam_CNT_anal:NC_017975

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : JM-2012 | Genbank acc : NC_017975

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae
but could not be further assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 173

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	NOT FOUND
Portal	53	lcl\|NC_017975.1_cdsid_YP_006383333.1	HHsearch (proba=90.98%)
TermL	117	lcl\|NC_017975.1_cdsid_YP_006383397.1	Blast (e-value=5e-99)
MTP	NOT FOUND
Sheath	113	lcl\|NC_017975.1_cdsid_YP_006383393.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	154	lcl\|NC_017975.1_cdsid_YP_006383434.1	HHsearch (proba=76.26%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
Portal	protein:vir:100920 protein:vir:3520 protein:vir:9263	ST104 APSE-1 ST64T	9 % 14 % 9 %
TermL	protein:vir:8929 protein:vir:94185 protein:vir:106989	phiKZ phiEL S-PM2	31 % 27 % 17 %
Sheath	protein:vir:8933 protein:vir:94259 protein:vir:6894	phiKZ phiEL RB69	23 % 19 % 13 %
Tc1	protein:vir:80105	B054	18 %