Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi297 | Genbank acc : NC_016762

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 69

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	47	lcl\|NC_016762.1_cdsid_YP_005098074.1	HHsearch (proba=100.00%)
Portal	43	lcl\|NC_016762.1_cdsid_YP_005098070.1	HHsearch (proba=100.00%)
TermL	41	lcl\|NC_016762.1_cdsid_YP_005098068.1	Blast (e-value=1e-129)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	50	lcl\|NC_016762.1_cdsid_YP_005098077.1	HHsearch (proba=100.00%)
Hc1	51	lcl\|NC_016762.1_cdsid_YP_005098078.1	HHsearch (proba=100.00%)
Ne1	52	lcl\|NC_016762.1_cdsid_YP_005098079.1	HHsearch (proba=100.00%)
Tc1	53	lcl\|NC_016762.1_cdsid_YP_005098080.1	HHsearch (proba=96.28%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105778 protein:vir:80068 protein:vir:79642	ES18 B054 TLS	70 % 12 % 13 %
Portal	protein:vir:105782 protein:vir:79647 protein:vir:107662	ES18 TLS T1	60 % 15 % 15 %
TermL	protein:vir:105705 protein:vir:96782 protein:vir:106641	ES18 phiHSIC 187	57 % 47 % 24 %
Ad1	protein:vir:105776 protein:vir:104344 protein:vir:79640	ES18 RTP TLS	66 % 22 % 22 %
Hc1	protein:vir:105774	ES18	43 %
Ne1	protein:vir:105773 protein:vir:98409 protein:vir:743	ES18 ul36 Tuc2009	47 % 24 % 23 %
Tc1	protein:vir:105772	ES18	24 %