Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : GRU1 | Genbank acc : NC_016435

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 94

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	19	lcl\|NC_016435.1_cdsid_YP_004935842.1	HHsearch (proba=100.00%)
Portal	15	lcl\|NC_016435.1_cdsid_YP_004935838.1	HHsearch (proba=100.00%)
TermL	14	lcl\|NC_016435.1_cdsid_YP_004935837.1	Blast (e-value=1e-134)
MTP	25	lcl\|NC_016435.1_cdsid_YP_004935848.1	Blast (e-value=6e-21)
Sheath	NOT FOUND
Ad1	21	lcl\|NC_016435.1_cdsid_YP_004935844.1	HHsearch (proba=97.43%)
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	24	lcl\|NC_016435.1_cdsid_YP_004935847.1	HHsearch (proba=95.54%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:98480 protein:vir:106590 protein:vir:96490	VWB Lj965 2972	29 % 20 % 16 %
Portal	protein:vir:102602 protein:vir:105819 protein:vir:7987	Llij PMC Che8	28 % 28 % 28 %
TermL	protein:vir:7986 protein:vir:102601 protein:vir:105818	Che8 Llij PMC	45 % 44 % 44 %
MTP	protein:vir:99006 protein:vir:80670 protein:vir:81256	Wildcat PA6 BFK20	26 % 22 % 20 %
Ad1	protein:vir:98481 protein:vir:78478 protein:vir:78254	VWB U2 Bethlehem	24 % 25 % 25 %
Tc1	protein:vir:98426 protein:vir:7994 protein:vir:102609	VWB Che8 Llij	22 % 21 % 20 %