Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : HK639 | Genbank acc : NC_016158

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 76

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|NC_016158.1_cdsid_YP_004934036.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_016158.1_cdsid_YP_004934033.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_016158.1_cdsid_YP_004934032.1	Blast (e-value=1e-136)
MTP	12	lcl\|NC_016158.1_cdsid_YP_004934042.1	Blast (e-value=3e-35)
Sheath	NOT FOUND
Ad1	8	lcl\|NC_016158.1_cdsid_YP_004934038.1	HHsearch (proba=100.00%)
Hc1	9	lcl\|NC_016158.1_cdsid_YP_004934039.1	HHsearch (proba=100.00%)
Ne1	10	lcl\|NC_016158.1_cdsid_YP_004934040.1	HHsearch (proba=100.00%)
Tc1	11	lcl\|NC_016158.1_cdsid_YP_004934041.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102605 protein:vir:105822 protein:vir:7990	Llij PMC Che8	20 % 20 % 20 %
Portal	protein:vir:97265 protein:vir:80453 protein:vir:95149	M6 BcepGomr PA73	34 % 22 % 20 %
TermL	protein:vir:80432 protein:vir:95130 protein:vir:97250	BcepGomr PA73 M6	51 % 49 % 43 %
MTP	protein:vir:107670 protein:vir:104349 protein:vir:103277	T1 RTP JK06	37 % 35 % 34 %
Ad1	protein:vir:80389 protein:vir:78383 protein:vir:95176	BcepGomr SETP3 PA73	34 % 31 % 31 %
Hc1	protein:vir:104346 protein:vir:78381 protein:vir:79639	RTP SETP3 TLS	30 % 28 % 25 %
Ne1	protein:vir:79638 protein:vir:104347 protein:vir:78380	TLS RTP SETP3	32 % 32 % 31 %
Tc1	protein:vir:79637 protein:vir:103278 protein:vir:107704	TLS JK06 T1	30 % 28 % 27 %