Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|NC_016158.1_cdsid_YP_004934036.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_016158.1_cdsid_YP_004934033.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_016158.1_cdsid_YP_004934032.1 Blast (e-value=1e-136)
MTP 12 lcl|NC_016158.1_cdsid_YP_004934042.1 Blast (e-value=3e-35)
Sheath NOT FOUND
Ad1 8 lcl|NC_016158.1_cdsid_YP_004934038.1 HHsearch (proba=100.00%)
Hc1 9 lcl|NC_016158.1_cdsid_YP_004934039.1 HHsearch (proba=100.00%)
Ne1 10 lcl|NC_016158.1_cdsid_YP_004934040.1 HHsearch (proba=100.00%)
Tc1 11 lcl|NC_016158.1_cdsid_YP_004934041.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:102605
protein:vir:105822
protein:vir:7990
Llij
PMC
Che8
20 %
20 %
20 %
Portal protein:vir:97265
protein:vir:80453
protein:vir:95149
M6
BcepGomr
PA73
34 %
22 %
20 %
TermL protein:vir:80432
protein:vir:95130
protein:vir:97250
BcepGomr
PA73
M6
51 %
49 %
43 %
MTP protein:vir:107670
protein:vir:104349
protein:vir:103277
T1
RTP
JK06
37 %
35 %
34 %
Ad1 protein:vir:80389
protein:vir:78383
protein:vir:95176
BcepGomr
SETP3
PA73
34 %
31 %
31 %
Hc1 protein:vir:104346
protein:vir:78381
protein:vir:79639
RTP
SETP3
TLS
30 %
28 %
25 %
Ne1 protein:vir:79638
protein:vir:104347
protein:vir:78380
TLS
RTP
SETP3
32 %
32 %
31 %
Tc1 protein:vir:79637
protein:vir:103278
protein:vir:107704
TLS
JK06
T1
30 %
28 %
27 %