Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiCD38-2 | Genbank acc : NC_015568

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_015568.1_cdsid_YP_004508385.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_015568.1_cdsid_YP_004508381.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_015568.1_cdsid_YP_004508380.1	Blast (e-value=4e-28)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	8	lcl\|NC_015568.1_cdsid_YP_004508386.1	HHsearch (proba=100.00%)
Hc1	9	lcl\|NC_015568.1_cdsid_YP_004508387.1	HHsearch (proba=78.26%)
Ne1	10	lcl\|NC_015568.1_cdsid_YP_004508388.1	HHsearch (proba=100.00%)
Tc1	11	lcl\|NC_015568.1_cdsid_YP_004508389.1	HHsearch (proba=98.49%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5974 protein:vir:1583 protein:vir:102944	SPP1 phig1e EJ-1	28 % 23 % 23 %
Portal	protein:vir:9815 protein:vir:3028 protein:vir:98883	315.4 PhiNIH1.1 BCJA1c	25 % 25 % 24 %
TermL	protein:vir:9814 protein:vir:93748 protein:vir:1235	315.4 55 phi ETA	26 % 25 % 25 %
Ad1	protein:vir:80967 protein:vir:43 protein:vir:98900	A500 A118 BCJA1c	31 % 31 % 25 %
Hc1	protein:vir:105774	ES18	13 %
Ne1	protein:vir:78894 protein:vir:9823 protein:vir:3036	A006 315.4 PhiNIH1.1	25 % 23 % 23 %
Tc1	protein:vir:1580 protein:vir:98890 protein:vir:9824	phig1e BCJA1c 315.4	17 % 15 % 16 %